Query         gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 608
No_of_seqs    253 out of 3612
Neff          6.7 
Searched_HMMs 39220
Date          Mon May 30 03:39:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780943.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01135 glmS glucosamine--fr 100.0       0       0 1726.1  48.2  607    2-608     1-628 (628)
  2 PRK00331 glucosamine--fructose 100.0       0       0 1508.5  55.5  602    1-608     1-604 (604)
  3 PTZ00295 glucosamine-fructose- 100.0       0       0 1480.7  53.9  598    1-608    78-691 (691)
  4 COG0449 GlmS Glucosamine 6-pho 100.0       0       0 1436.0  51.3  596    1-608     1-597 (597)
  5 KOG1268 consensus              100.0       0       0 1185.9  45.0  605    1-608     1-670 (670)
  6 PRK11382 frlB fructoselysine-6 100.0       0       0  693.8  30.1  335  240-605     8-345 (347)
  7 COG2222 AgaS Predicted phospho 100.0       0       0  475.2  27.5  334  249-607     2-339 (340)
  8 cd00714 GFAT Glutamine amidotr 100.0       0       0  478.6  20.5  213    2-214     1-215 (215)
  9 cd00715 GPATase_N Glutamine am 100.0       0       0  421.8  21.0  220    2-225     1-229 (252)
 10 PRK08525 amidophosphoribosyltr 100.0       0       0  411.7  21.8  216    1-221     1-225 (445)
 11 PRK06781 amidophosphoribosyltr 100.0       0       0  407.8  21.2  219    1-224    11-237 (471)
 12 PRK07349 amidophosphoribosyltr 100.0       0       0  404.1  20.4  220    2-224    29-261 (495)
 13 PRK09246 amidophosphoribosyltr 100.0       0       0  400.5  21.2  216    1-218     1-235 (503)
 14 PRK07631 amidophosphoribosyltr 100.0       0       0  399.5  21.6  219    1-224    11-237 (475)
 15 PRK05793 amidophosphoribosyltr 100.0       0       0  393.4  21.6  217    2-223    18-244 (472)
 16 PRK06388 amidophosphoribosyltr 100.0       0       0  395.5  19.9  217    2-223    20-244 (474)
 17 PRK07272 amidophosphoribosyltr 100.0       0       0  389.7  21.6  218    1-223    11-238 (484)
 18 PRK09123 amidophosphoribosyltr 100.0       0       0  386.5  21.3  218    1-223    13-239 (480)
 19 PRK08341 amidophosphoribosyltr 100.0       0       0  380.5  20.1  215    1-223     4-225 (442)
 20 cd01907 GlxB Glutamine amidotr 100.0       0       0  373.3  19.9  210    2-214     1-249 (249)
 21 PRK07847 amidophosphoribosyltr 100.0       0       0  359.8  19.0  217    4-224     1-232 (489)
 22 TIGR01134 purF amidophosphorib 100.0       0       0  364.0  15.8  215    2-219     1-238 (467)
 23 COG0034 PurF Glutamine phospho 100.0       0       0  356.2  19.7  219    1-223     4-236 (470)
 24 pfam00310 GATase_2 Glutamine a 100.0 2.8E-45       0  334.6  15.9  189    2-193     1-223 (223)
 25 KOG0572 consensus              100.0 1.3E-44       0  329.5  18.1  221    1-224     1-242 (474)
 26 cd00352 Gn_AT_II Glutamine ami 100.0   8E-40 2.1E-44  296.0  19.6  209    2-212     1-220 (220)
 27 cd05009 SIS_GlmS_GlmD_2 SIS (S 100.0   6E-39 1.5E-43  289.9  17.3  152  452-606     2-153 (153)
 28 TIGR02815 agaS_fam putative su 100.0 2.1E-37 5.3E-42  279.2  21.2  334  250-599     3-357 (374)
 29 PRK08674 bifunctional phosphog 100.0 7.6E-36 1.9E-40  268.3  26.3  305  252-598     1-316 (328)
 30 cd05010 SIS_AgaS_like AgaS-lik 100.0   2E-37   5E-42  279.4  14.0  134  466-599     1-139 (151)
 31 cd05008 SIS_GlmS_GlmD_1 SIS (S 100.0 1.6E-33   4E-38  252.2  10.4  126  292-417     1-126 (126)
 32 TIGR01536 asn_synth_AEB aspara 100.0 1.9E-32 4.8E-37  244.7  14.5  193    2-209     1-215 (646)
 33 PRK09431 asnB asparagine synth 100.0 5.8E-31 1.5E-35  234.3  14.9  178    1-219     1-188 (555)
 34 TIGR03108 eps_aminotran_1 exos 100.0 7.4E-31 1.9E-35  233.6  14.3  178    1-218     1-215 (628)
 35 PTZ00077 asparagine synthetase 100.0   2E-30 5.2E-35  230.6  16.1  183    1-218     1-194 (610)
 36 TIGR03104 trio_amidotrans aspa 100.0 3.1E-30   8E-35  229.3  15.9  179    1-218     1-215 (589)
 37 cd00712 AsnB Glutamine amidotr 100.0 2.3E-30 5.8E-35  230.2  14.7  180    2-221     1-215 (220)
 38 cd05710 SIS_1 A subgroup of th 100.0 3.6E-31 9.3E-36  235.8   9.5  119  292-412     1-120 (120)
 39 COG0367 AsnB Asparagine syntha 100.0 1.1E-28 2.7E-33  218.6  20.2  179    1-219     1-192 (542)
 40 pfam01380 SIS SIS domain. SIS   99.9 2.8E-26 7.1E-31  201.8  11.1  128  287-414     2-130 (131)
 41 cd03766 Gn_AT_II_novel Gn_AT_I  99.9 1.1E-22 2.8E-27  176.7  11.3  169    1-210     1-179 (181)
 42 cd01908 YafJ Glutamine amidotr  99.9 2.7E-21 6.9E-26  167.1  15.0  213    1-217     1-257 (257)
 43 COG0067 GltB Glutamate synthas  99.9 3.2E-20 8.1E-25  159.7  15.5  170   44-217   178-369 (371)
 44 TIGR03442 conserved hypothetic  99.8   1E-19 2.7E-24  156.1  16.0  216    1-222     1-249 (251)
 45 KOG0571 consensus               99.8 2.5E-20 6.3E-25  160.5   9.9  180    1-221     1-189 (543)
 46 cd05014 SIS_Kpsf KpsF-like pro  99.8   2E-18   5E-23  147.2  10.9  122  292-414     2-127 (128)
 47 cd01909 betaLS_CarA_N Glutamin  99.7 2.6E-15 6.6E-20  125.5  12.5  120   66-199    26-148 (199)
 48 PRK11557 putative DNA-binding   99.6 1.4E-14 3.7E-19  120.4  14.8  153  252-412    99-252 (282)
 49 PRK11302 DNA-binding transcrip  99.6 2.1E-14 5.4E-19  119.2  12.0  127  286-417   124-255 (284)
 50 cd05005 SIS_PHI Hexulose-6-pho  99.6 2.4E-14 6.2E-19  118.8  12.0  133  287-427    30-173 (179)
 51 TIGR03127 RuMP_HxlB 6-phospho   99.6 2.7E-14 6.9E-19  118.4  10.6  129  286-421    26-165 (179)
 52 LOAD_sis consensus              99.6 1.1E-14 2.8E-19  121.1   8.6   87  291-377     4-90  (90)
 53 COG1737 RpiR Transcriptional r  99.6   2E-13 5.1E-18  112.4  14.3  167  247-419    92-260 (281)
 54 COG0794 GutQ Predicted sugar p  99.6 4.1E-14 1.1E-18  117.2  10.6  132  288-422    37-174 (202)
 55 PRK11337 DNA-binding transcrip  99.6   8E-14   2E-18  115.2  12.0  130  286-417   137-269 (293)
 56 cd05013 SIS_RpiR RpiR-like pro  99.6 2.4E-14 6.1E-19  118.8   8.8  124  287-413    10-134 (139)
 57 PRK10892 D-arabinose 5-phospha  99.5 2.1E-13 5.4E-18  112.2  13.3  177  247-430     9-189 (326)
 58 PRK11543 gutQ D-arabinose 5-ph  99.5 1.5E-13 3.9E-18  113.2  11.6  141  288-430    40-184 (321)
 59 COG0121 Predicted glutamine am  99.5 5.1E-13 1.3E-17  109.6  13.3  206    1-219     1-246 (252)
 60 PRK05441 murQ N-acetylmuramic   99.4 1.7E-12 4.2E-17  106.0  10.5  139  286-424    54-216 (273)
 61 cd05007 SIS_Etherase N-acetylm  99.4 2.9E-12 7.5E-17  104.3  11.3  140  286-425    45-208 (257)
 62 PRK12570 N-acetylmuramic acid-  99.4 8.3E-12 2.1E-16  101.2   9.9  138  286-424    54-216 (296)
 63 PRK11750 gltB glutamate syntha  99.3 4.8E-11 1.2E-15   95.8  13.1  220   17-255   160-432 (1483)
 64 TIGR00393 kpsF sugar isomerase  99.3 5.3E-11 1.4E-15   95.5  10.9  134  292-429     2-141 (272)
 65 COG2103 Predicted sugar phosph  99.3 3.6E-11 9.1E-16   96.8   9.7  167  251-423    23-217 (298)
 66 pfam01380 SIS SIS domain. SIS   99.3 4.6E-11 1.2E-15   96.0   9.9  126  460-587     2-127 (131)
 67 TIGR02128 G6PI_arch bifunction  99.2 1.1E-08 2.7E-13   79.6  21.1  279  287-598    24-327 (338)
 68 cd00713 GltS Glutamine amidotr  99.2 1.8E-10 4.7E-15   91.8  11.0  199   17-223   148-401 (413)
 69 cd04795 SIS SIS domain. SIS (S  99.2 5.9E-11 1.5E-15   95.2   7.5   79  293-371     1-81  (87)
 70 TIGR00274 TIGR00274 glucokinas  99.1 6.7E-10 1.7E-14   87.9  10.9  166  252-426    21-217 (291)
 71 cd05017 SIS_PGI_PMI_1 The memb  99.1 4.3E-10 1.1E-14   89.2   7.0   87  292-384     1-88  (119)
 72 PRK00331 glucosamine--fructose  98.8 4.9E-07 1.3E-11   67.9  15.0  157  431-593   254-420 (604)
 73 PRK11382 frlB fructoselysine-6  98.8 3.4E-07 8.7E-12   69.1  12.5  148  252-422   183-333 (347)
 74 cd05710 SIS_1 A subgroup of th  98.7 1.4E-07 3.6E-12   71.7  10.0  118  465-586     1-118 (120)
 75 COG0279 GmhA Phosphoheptose is  98.7 4.9E-08 1.2E-12   74.9   6.8  107  286-401    37-165 (176)
 76 PRK13938 phosphoheptose isomer  98.6 1.3E-07 3.3E-12   72.0   7.5  103  286-388    41-164 (196)
 77 cd05006 SIS_GmhA Phosphoheptos  98.6 1.3E-07 3.2E-12   72.0   7.2  101  287-390    30-154 (177)
 78 COG2222 AgaS Predicted phospho  98.6 9.1E-06 2.3E-10   59.2  16.2  127  285-422   196-324 (340)
 79 PRK00414 gmhA phosphoheptose i  98.6 2.5E-07 6.4E-12   70.0   7.9  103  286-388    40-162 (192)
 80 TIGR00441 gmhA phosphoheptose   98.6 6.2E-08 1.6E-12   74.2   4.4  131  254-387     3-160 (186)
 81 PTZ00295 glucosamine-fructose-  98.5 6.4E-06 1.6E-10   60.2  13.7  160  431-597   332-512 (691)
 82 COG1737 RpiR Transcriptional r  98.5 1.5E-05 3.9E-10   57.5  15.1  137  450-592   117-262 (281)
 83 PRK02947 hypothetical protein;  98.5 7.9E-07   2E-11   66.5   8.5  123  286-411    37-202 (247)
 84 cd05005 SIS_PHI Hexulose-6-pho  98.5 1.6E-05 4.1E-10   57.4  14.5  140  450-597    20-173 (179)
 85 PRK13937 phosphoheptose isomer  98.5   1E-06 2.6E-11   65.8   8.1  104  286-389    38-162 (192)
 86 TIGR01135 glmS glucosamine--fr  98.4 3.1E-06   8E-11   62.4  10.3  323  191-595    83-441 (628)
 87 cd05009 SIS_GlmS_GlmD_2 SIS (S  98.4 2.4E-06 6.1E-11   63.2   9.2  129  287-422    10-140 (153)
 88 cd05013 SIS_RpiR RpiR-like pro  98.4   7E-06 1.8E-10   59.9  11.1  131  452-585     2-134 (139)
 89 TIGR03127 RuMP_HxlB 6-phospho   98.4 1.7E-05 4.2E-10   57.3  13.0  139  451-597    18-170 (179)
 90 PRK13936 phosphoheptose isomer  98.3 5.5E-06 1.4E-10   60.6   9.4  102  287-388    40-165 (197)
 91 PRK11302 DNA-binding transcrip  98.3   8E-05   2E-09   52.6  14.7  112  450-565   115-226 (284)
 92 cd05008 SIS_GlmS_GlmD_1 SIS (S  98.3 8.2E-06 2.1E-10   59.5   9.2  120  465-587     1-125 (126)
 93 COG0449 GlmS Glucosamine 6-pho  98.2 9.8E-05 2.5E-09   51.9  13.9  131  459-592   279-414 (597)
 94 PRK11337 DNA-binding transcrip  98.2 6.9E-05 1.8E-09   53.0  12.9  115  450-567   128-242 (293)
 95 PRK10886 DnaA initiator-associ  98.2 1.6E-05 4.2E-10   57.4   9.0  102  286-387    37-162 (196)
 96 cd01910 Wali7 This domain is p  98.2   4E-06   1E-10   61.6   5.7  132   86-228    63-204 (224)
 97 PRK11557 putative DNA-binding   98.1 0.00016 4.1E-09   50.5  12.9  112  450-567   119-233 (282)
 98 cd04795 SIS SIS domain. SIS (S  98.1 1.2E-05 3.2E-10   58.2   7.2   80  466-546     1-81  (87)
 99 COG0166 Pgi Glucose-6-phosphat  98.0 0.00023 5.9E-09   49.3  12.7  110  289-398    78-206 (446)
100 COG4821 Uncharacterized protei  98.0 2.6E-05 6.5E-10   56.0   7.3  129  286-417    34-205 (243)
101 cd05010 SIS_AgaS_like AgaS-lik  98.0 0.00014 3.7E-09   50.8  10.6  126  293-422     1-133 (151)
102 KOG0399 consensus               98.0 0.00057 1.5E-08   46.6  13.6  213   39-268   255-519 (2142)
103 KOG0573 consensus               98.0 7.6E-05   2E-09   52.7   8.9  145    1-188     1-152 (520)
104 PRK03868 glucose-6-phosphate i  97.9 0.00017 4.3E-09   50.3   9.9   96  287-383    55-163 (409)
105 cd05014 SIS_Kpsf KpsF-like pro  97.8 0.00033 8.4E-09   48.3  10.5  102  465-569     2-103 (128)
106 pfam00342 PGI Phosphoglucose i  97.7  0.0004   1E-08   47.7   9.3  115  286-400    92-227 (483)
107 PRK08674 bifunctional phosphog  97.7  0.0018 4.6E-08   43.1  12.0   91  293-383   192-293 (328)
108 cd05015 SIS_PGI_1 Phosphogluco  97.7 0.00018 4.6E-09   50.1   6.8   93  288-381    18-125 (158)
109 PRK00179 pgi glucose-6-phospha  97.6  0.0018 4.6E-08   43.2  11.1  114  286-399   126-262 (525)
110 PRK00973 glucose-6-phosphate i  97.6 0.00064 1.6E-08   46.3   8.5   98  286-383    68-187 (454)
111 PRK11543 gutQ D-arabinose 5-ph  97.4   0.014 3.6E-07   37.0  16.4  140  454-596    32-180 (321)
112 PRK09533 bifunctional transald  97.2  0.0016 4.2E-08   43.5   6.8  108  287-395   452-577 (950)
113 PRK13937 phosphoheptose isomer  97.0   0.036 9.1E-07   34.2  16.7  142  441-584    20-181 (192)
114 PRK10892 D-arabinose 5-phospha  97.0   0.036 9.1E-07   34.1  15.1  142  452-596    35-185 (326)
115 COG0794 GutQ Predicted sugar p  97.0   0.036 9.3E-07   34.1  13.7  103  462-567    38-140 (202)
116 PRK02947 hypothetical protein;  96.7   0.054 1.4E-06   32.9  14.3  155  441-596    15-218 (247)
117 cd05006 SIS_GmhA Phosphoheptos  96.7    0.06 1.5E-06   32.6  15.2  119  449-569    19-157 (177)
118 pfam10432 bact-PGI_C Bacterial  96.2    0.11 2.7E-06   30.9  12.8  128  450-597     5-142 (154)
119 PRK10886 DnaA initiator-associ  96.1    0.12   3E-06   30.5  15.5  120  448-568    26-167 (196)
120 PRK13936 phosphoheptose isomer  96.1    0.12   3E-06   30.5  16.0  119  449-568    29-169 (197)
121 PRK00414 gmhA phosphoheptose i  95.7    0.18 4.7E-06   29.2  15.6  121  446-568    27-166 (192)
122 PRK04020 rps2P 30S ribosomal p  95.5    0.22 5.6E-06   28.7   9.8  123  291-431    68-193 (204)
123 TIGR02128 G6PI_arch bifunction  95.3    0.19 4.8E-06   29.1   8.5   57  509-566    70-127 (338)
124 PRK13938 phosphoheptose isomer  95.2    0.27 6.8E-06   28.1  14.3  120  447-568    29-168 (196)
125 KOG1268 consensus               95.0    0.31 7.8E-06   27.7  10.9  151  432-589   315-483 (670)
126 cd05017 SIS_PGI_PMI_1 The memb  94.9    0.19 4.9E-06   29.1   7.7   61  507-568    39-100 (119)
127 cd02751 MopB_DMSOR-like The Mo  94.8    0.32 8.3E-06   27.5   8.7  108  353-474   195-317 (609)
128 TIGR00274 TIGR00274 glucokinas  94.7    0.35 8.9E-06   27.3   8.5  121  436-559    30-173 (291)
129 LOAD_sis consensus              94.6    0.28 7.1E-06   28.0   7.8   86  463-550     2-88  (90)
130 PTZ00254 40S ribosomal protein  94.4    0.38 9.7E-06   27.0   8.2  123  288-428    69-194 (242)
131 cd02769 MopB_DMSOR-BSOR-TMAOR   94.2    0.45 1.1E-05   26.5   8.7   22  451-472   296-317 (609)
132 TIGR01012 Sa_S2_E_A ribosomal   94.0   0.087 2.2E-06   31.5   4.3  123  289-429    61-186 (197)
133 PRK05441 murQ N-acetylmuramic   93.9    0.51 1.3E-05   26.1  10.9  156  435-593    30-214 (273)
134 cd05637 SIS_PGI_PMI_2 The memb  93.8    0.53 1.4E-05   26.0  12.8  124  453-595     3-132 (132)
135 cd02766 MopB_3 The MopB_3 CD i  93.4    0.61 1.6E-05   25.6   7.7  109  353-475   175-292 (501)
136 COG0279 GmhA Phosphoheptose is  93.2    0.68 1.7E-05   25.3  13.6  121  446-568    24-164 (176)
137 KOG2446 consensus               90.9    0.63 1.6E-05   25.5   5.3   76  287-362   147-228 (546)
138 cd02759 MopB_Acetylene-hydrata  90.7     1.3 3.2E-05   23.4   7.6  108  354-475   180-296 (477)
139 cd02770 MopB_DmsA-EC This CD (  89.9     1.5 3.7E-05   22.9   7.3   17  377-393   453-469 (617)
140 TIGR01591 Fdh-alpha formate de  89.8    0.34 8.7E-06   27.3   3.1  117  347-472   173-302 (694)
141 cd02762 MopB_1 The MopB_1 CD i  89.1     1.7 4.2E-05   22.6   8.3  111  351-475   178-297 (539)
142 cd02767 MopB_ydeP The MopB_yde  88.2     1.9 4.9E-05   22.1  11.7  125  339-474   165-319 (574)
143 cd02750 MopB_Nitrate-R-NarG-li  87.8       2 5.1E-05   22.0   7.5  106  355-474   190-298 (461)
144 PRK00421 murC UDP-N-acetylmura  86.7       2 5.1E-05   22.0   5.4   40   90-132    67-106 (459)
145 cd02753 MopB_Formate-Dh-H Form  84.7     2.9 7.3E-05   20.9   8.5   40  354-394   175-214 (512)
146 TIGR03479 DMSO_red_II_alp DMSO  84.2       3 7.6E-05   20.8   6.0   30  365-394   574-603 (912)
147 PRK08350 hypothetical protein;  84.1     1.3 3.2E-05   23.4   3.4   56  337-392   254-309 (341)
148 pfam00113 Enolase_C Enolase, C  83.5     1.4 3.5E-05   23.1   3.4   56  337-392   201-256 (296)
149 TIGR01701 Fdhalpha-like oxidor  83.0     3.3 8.5E-05   20.4   7.9   90  293-386   156-267 (824)
150 cd03313 enolase Enolase: Enola  82.0     1.8 4.6E-05   22.3   3.6  101  292-392   251-384 (408)
151 PTZ00081 enolase (2-phospho-D-  81.5     2.2 5.5E-05   21.7   3.8   55  338-392   347-401 (442)
152 cd01425 RPS2 Ribosomal protein  81.1     3.9   1E-04   20.0   6.4   46  338-389   128-173 (193)
153 PRK00077 eno phosphopyruvate h  80.5     2.3 5.9E-05   21.6   3.7   99  294-392   255-386 (427)
154 cd01409 SIRT4 SIRT4: Eukaryoti  80.1     3.1   8E-05   20.6   4.3   55  336-391   203-257 (260)
155 pfam10740 DUF2529 Protein of u  79.7     4.3 0.00011   19.7   5.9   55  335-389    79-135 (172)
156 COG0148 Eno Enolase [Carbohydr  79.2     2.6 6.7E-05   21.2   3.6   98  296-393   254-384 (423)
157 cd01412 SIRT5_Af1_CobB SIRT5_A  78.7       4  0.0001   19.9   4.4   55  336-391   163-217 (224)
158 COG1029 FwdB Formylmethanofura  77.6     4.9 0.00013   19.3   9.1   25  452-476   234-259 (429)
159 PRK09939 putative oxidoreducta  77.5       5 0.00013   19.2  13.5   15   25-39     43-57  (759)
160 COG3490 Uncharacterized protei  77.2     5.1 0.00013   19.2   5.4   64  168-231   127-196 (366)
161 TIGR01060 eno phosphopyruvate   76.8       3 7.7E-05   20.7   3.3   55  337-392   335-390 (430)
162 TIGR00176 mobB molybdopterin-g  76.7     3.1   8E-05   20.6   3.4   59  341-399     4-67  (165)
163 cd02754 MopB_Nitrate-R-NapA-li  75.6     5.4 0.00014   19.0   4.4   29  364-393   188-216 (565)
164 pfam00318 Ribosomal_S2 Ribosom  75.2     5.7 0.00015   18.8   6.6   45  339-389   139-183 (205)
165 pfam11004 DUF2843 Protein of u  75.1     3.5   9E-05   20.3   3.3   26  300-325   239-264 (281)
166 PRK05333 NAD-dependent deacety  74.2     4.5 0.00012   19.5   3.7   56  335-391   212-267 (285)
167 PRK02472 murD UDP-N-acetylmura  73.9     5.1 0.00013   19.2   3.9   33   91-126    73-105 (450)
168 PRK05299 rpsB 30S ribosomal pr  73.8     6.2 0.00016   18.6   8.9   46  339-390   159-204 (255)
169 cd01410 SIRT7 SIRT7: Eukaryoti  73.5     5.6 0.00014   18.9   4.0   52  335-387   153-204 (206)
170 COG0052 RpsB Ribosomal protein  73.0     6.4 0.00016   18.5   5.6   56  355-421   170-225 (252)
171 PRK00481 NAD-dependent deacety  72.0     5.8 0.00015   18.8   3.8   54  337-391   177-230 (239)
172 TIGR02477 PFKA_PPi diphosphate  71.9     6.8 0.00017   18.3   5.7   30  289-318   168-198 (566)
173 cd02755 MopB_Thiosulfate-R-lik  71.4       7 0.00018   18.2   9.4  106  354-473   176-291 (454)
174 cd04906 ACT_ThrD-I_1 First of   70.4     5.8 0.00015   18.8   3.5   49  326-374    28-76  (85)
175 KOG2670 consensus               70.3     7.3 0.00019   18.1   4.0   56  338-394   340-396 (433)
176 COG2213 MtlA Phosphotransferas  70.2     7.4 0.00019   18.0   7.3   16  182-197    84-99  (472)
177 TIGR02884 spore_pdaA delta-lac  69.6     2.3 5.8E-05   21.6   1.3   31  357-394   146-176 (225)
178 TIGR01011 rpsB_bact ribosomal   69.3     7.7  0.0002   17.9   4.0   52  525-585   168-219 (227)
179 TIGR00075 hypD hydrogenase exp  68.4       8  0.0002   17.8   4.6   23  377-399   137-161 (384)
180 TIGR02545 ATP_syn_fliI flagell  68.0     4.8 0.00012   19.4   2.7  109  295-417   164-296 (439)
181 pfam10079 DUF2317 Uncharacteri  67.7     6.3 0.00016   18.5   3.2   64  104-167   174-237 (541)
182 cd02765 MopB_4 The MopB_4 CD i  66.6     8.7 0.00022   17.5   9.5   42  348-394   402-443 (567)
183 TIGR02247 HAD-1A3-hyp Epoxide   66.2     5.9 0.00015   18.7   2.8   26  350-375   107-132 (228)
184 PRK00141 murD UDP-N-acetylmura  66.1     8.9 0.00023   17.5   5.0   34   91-127    77-110 (476)
185 cd01413 SIR2_Af2 SIR2_Af2: Arc  64.6     9.5 0.00024   17.3   4.4   51  336-387   170-220 (222)
186 cd05567 PTS_IIB_mannitol PTS_I  63.1      10 0.00026   17.1   5.3   68  297-378    10-79  (87)
187 pfam05198 IF3_N Translation in  62.8      10 0.00026   17.1   3.6   49  339-387    13-64  (76)
188 PRK13944 protein-L-isoaspartat  60.5      10 0.00026   17.1   3.2   15  532-547   160-174 (205)
189 TIGR01842 type_I_sec_PrtD type  60.1     2.9 7.5E-05   20.8   0.4   39  512-550   483-527 (556)
190 cd06103 ScCS-like Saccharomyce  60.0      11 0.00029   16.7   3.4   93  375-472   217-315 (426)
191 TIGR00707 argD acetylornithine  59.5      11 0.00029   16.7   3.3   15  468-482   337-351 (402)
192 PRK00312 pcm protein-L-isoaspa  59.4      10 0.00026   17.1   3.0   15  532-547   162-176 (213)
193 COG4015 Predicted dinucleotide  58.8      12  0.0003   16.6   4.5   63  309-371    75-141 (217)
194 pfam01135 PCMT Protein-L-isoas  57.5      12 0.00032   16.5   3.3   14  532-546   160-173 (205)
195 TIGR02076 pyrH_arch uridylate   56.7      13 0.00033   16.4   3.8   38  338-375   110-147 (232)
196 TIGR01694 MTAP methylthioadeno  56.1     9.9 0.00025   17.2   2.5   52  334-386   166-218 (263)
197 PRK13943 protein-L-isoaspartat  56.1      13 0.00034   16.3   3.4   23  288-310    74-96  (317)
198 cd01407 SIR2-fam SIR2 family o  55.6      13 0.00034   16.3   3.9   46  339-385   169-214 (218)
199 cd03116 MobB Molybdenum is an   55.3      14 0.00035   16.2   3.1   33  341-373     6-38  (159)
200 CHL00067 rps2 ribosomal protei  54.4      14 0.00036   16.1   7.1   45  339-389   159-203 (227)
201 TIGR01885 Orn_aminotrans ornit  54.0      14 0.00036   16.1   3.3   48  142-193   111-159 (426)
202 TIGR00514 accC acetyl-CoA carb  53.8     8.6 0.00022   17.6   1.9   52  343-403     6-61  (451)
203 COG5228 POP2 mRNA deadenylase   53.6     6.3 0.00016   18.5   1.2  142  146-320    32-182 (299)
204 PRK07574 formate dehydrogenase  52.9      11 0.00028   16.9   2.3   28   98-125    51-78  (385)
205 COG4229 Predicted enolase-phos  52.7      15 0.00038   15.9   3.9   14  489-502    88-101 (229)
206 cd02757 MopB_Arsenate-R This C  52.0      15 0.00039   15.9   7.4   39  356-395   185-223 (523)
207 pfam00289 CPSase_L_chain Carba  51.3      16  0.0004   15.8   3.1   48  342-391     4-53  (109)
208 TIGR00213 GmhB_yaeD D,D-heptos  51.3      14 0.00036   16.1   2.7   25  351-375    29-53  (178)
209 pfam09147 DUF1933 Domain of un  51.3      16  0.0004   15.8   7.7   77   98-187    54-134 (201)
210 TIGR00292 TIGR00292 thiazole b  51.2      12 0.00031   16.5   2.3   84  291-381    22-133 (283)
211 cd06106 ScCit3_like Saccharomy  51.2      16  0.0004   15.8   5.8  104  377-485   219-336 (428)
212 pfam02887 PK_C Pyruvate kinase  49.8      16 0.00041   15.7   2.8   32  339-375    18-50  (117)
213 cd06276 PBP1_FucR_like Ligand-  49.6      17 0.00042   15.6   6.8   92  287-387   114-211 (247)
214 KOG3459 consensus               49.0      11 0.00029   16.8   1.9   29  494-522    14-46  (114)
215 PRK12814 putative NADPH-depend  48.0      12 0.00031   16.5   1.9   22  347-370   331-352 (652)
216 TIGR00232 tktlase_bact transke  47.6      18 0.00045   15.4   4.6  114  476-608   482-621 (675)
217 KOG0830 consensus               46.7      15 0.00038   15.9   2.2   60  355-425   103-162 (254)
218 PRK13886 conjugal transfer pro  46.5     8.7 0.00022   17.5   1.0   35  297-331    13-50  (241)
219 PRK00960 seryl-tRNA synthetase  46.5     5.7 0.00015   18.8   0.0   12  340-351   334-345 (516)
220 COG0005 Pnp Purine nucleoside   45.1      10 0.00026   17.0   1.2   47  341-387   173-219 (262)
221 pfam00585 Thr_dehydrat_C C-ter  44.9      19  0.0005   15.1   3.1   24  103-126    63-86  (91)
222 KOG1184 consensus               44.8      19  0.0005   15.1   6.0   10  177-186   162-171 (561)
223 cd03238 ABC_UvrA The excision   44.5      19 0.00049   15.2   2.5   38  525-565   125-162 (176)
224 COG2518 Pcm Protein-L-isoaspar  44.1      16 0.00041   15.7   2.1   14  532-546   156-170 (209)
225 TIGR00631 uvrb excinuclease AB  44.0      20 0.00051   15.0   4.3  110   91-216    56-201 (667)
226 cd03271 ABC_UvrA_II The excisi  44.0      17 0.00044   15.5   2.2   36  526-564   209-244 (261)
227 pfam00901 Orbi_VP5 Orbivirus o  43.9      20 0.00051   15.0   4.9   59  535-594   446-506 (508)
228 PRK11582 flagella biosynthesis  43.6      14 0.00035   16.2   1.6   18   91-108    33-50  (179)
229 TIGR01501 MthylAspMutase methy  43.3      20 0.00052   15.0   3.6   45   92-136    83-133 (134)
230 TIGR01780 SSADH succinic semia  42.9      21 0.00053   14.9   3.0  247  248-546    32-333 (454)
231 TIGR00977 LeuA_rel 2-isopropyl  42.8      13 0.00034   16.3   1.4   77  296-381   285-364 (543)
232 cd02760 MopB_Phenylacetyl-CoA-  42.5      21 0.00054   14.9   9.5   37  348-389   529-565 (760)
233 PRK09569 type I citrate syntha  41.9      21 0.00055   14.8   5.4   89  380-472   222-316 (437)
234 TIGR01064 pyruv_kin pyruvate k  41.7      22 0.00055   14.8   2.5   81  139-220    60-153 (513)
235 TIGR00313 cobQ cobyric acid sy  41.6      18 0.00046   15.3   2.0   23   12-34      9-33  (502)
236 TIGR01271 CFTR_protein cystic   41.6      13 0.00033   16.4   1.2   92  205-306   533-630 (1534)
237 pfam03205 MobB Molybdopterin g  41.0      22 0.00056   14.7   3.2   34  339-372     3-36  (122)
238 PRK10751 molybdopterin-guanine  41.0      22 0.00056   14.7   3.1   34  341-374     7-40  (170)
239 TIGR01428 HAD_type_II haloacid  40.9      11 0.00029   16.7   0.9   23  528-550   104-126 (207)
240 PRK05339 hypothetical protein;  40.9      22 0.00057   14.7   3.2   38  337-378   149-186 (273)
241 PRK05298 excinuclease ABC subu  40.6      22 0.00057   14.7   4.0   68   91-173    60-142 (657)
242 PRK06769 hypothetical protein;  40.4      14 0.00036   16.1   1.3   25  351-375    31-55  (175)
243 PRK13641 cbiO cobalt transport  40.3      12 0.00032   16.5   1.0   22  526-547   182-203 (286)
244 PRK10982 galactose/methyl gala  40.1      23 0.00058   14.6   2.9   28  186-213   187-214 (491)
245 pfam10609 ParA ParA/MinD ATPas  39.4      23  0.0006   14.6   3.3   46  338-383    27-72  (81)
246 PRK12483 threonine dehydratase  39.3      23  0.0006   14.6   3.5   49  326-374   372-420 (521)
247 PRK10535 macrolide transporter  38.9      23 0.00058   14.7   2.2   30  187-217   198-227 (648)
248 cd02758 MopB_Tetrathionate-Ra   38.6      24 0.00061   14.5   8.1   45  344-390   502-546 (735)
249 PRK02006 murD UDP-N-acetylmura  38.2      24 0.00062   14.4   8.4   40   91-132    70-112 (501)
250 cd05563 PTS_IIB_ascorbate PTS_  37.8      25 0.00063   14.4   5.5   66  297-375     9-74  (86)
251 PRK04176 ribulose-1,5-biphosph  37.6      25 0.00063   14.4   3.2   30  291-324    26-55  (257)
252 PRK13649 cbiO cobalt transport  37.5      19 0.00049   15.1   1.6   19  528-546   184-202 (280)
253 TIGR01819 F420_cofD LPPG:Fo 2-  37.3      14 0.00037   16.0   0.9   60  336-396   234-298 (359)
254 PRK11587 putative phosphatase;  37.1      23 0.00059   14.6   2.0   35  353-387   164-198 (218)
255 pfam01924 HypD Hydrogenase for  36.8     8.3 0.00021   17.7  -0.4  136  356-517    95-238 (355)
256 pfam01946 Thi4 Thi4 family. Th  36.7      26 0.00066   14.3   3.2   31  291-325    18-48  (229)
257 TIGR01737 FGAM_synth_I phospho  36.5      26 0.00066   14.3   5.0   64  309-374    18-103 (264)
258 cd07983 LPLAT_DUF374-like Lyso  36.3      20 0.00051   15.0   1.5   92   71-166     7-107 (189)
259 TIGR00113 queA S-adenosylmethi  36.0      25 0.00065   14.3   2.0   39  341-384   247-288 (364)
260 pfam00265 TK Thymidine kinase.  35.9      26 0.00067   14.2   3.6   53  339-394     4-56  (175)
261 PRK09224 threonine dehydratase  35.8      27 0.00068   14.2   3.5   49  326-374   355-403 (504)
262 PRK13643 cbiO cobalt transport  35.7      21 0.00055   14.8   1.6   20  582-602   250-271 (288)
263 cd03225 ABC_cobalt_CbiO_domain  35.5      25 0.00063   14.4   1.9   25  524-548   169-193 (211)
264 cd04907 ACT_ThrD-I_2 Second of  35.4      27 0.00068   14.1   3.1   25  103-127    53-77  (81)
265 PRK07208 hypothetical protein;  35.3      27 0.00069   14.1   3.6   10  463-472   420-429 (474)
266 COG1232 HemY Protoporphyrinoge  34.4      28 0.00071   14.0   3.4   26   21-47     16-46  (444)
267 PRK08931 5'-methylthioadenosin  34.2      15 0.00038   15.9   0.6   42  345-386   160-201 (289)
268 PRK13549 xylose transporter AT  34.1      28 0.00072   14.0   3.1   28  186-213   196-223 (513)
269 cd03409 Chelatase_Class_II Cla  34.0      28 0.00072   14.0   4.0   59  292-371     1-65  (101)
270 PRK06242 flavodoxin; Provision  34.0      28 0.00072   14.0   3.8   34  338-373     2-36  (150)
271 TIGR03467 HpnE squalene-associ  33.9      28 0.00072   14.0   3.4   10   21-30     14-23  (430)
272 PRK13647 cbiO cobalt transport  33.9      28 0.00072   14.0   2.5   13  339-351    34-46  (273)
273 CHL00199 infC translation init  33.7      29 0.00073   14.0   3.6   48  340-387    26-76  (182)
274 PRK08942 D,D-heptose 1,7-bisph  33.6      29 0.00073   14.0   2.6   25  351-375    32-56  (181)
275 PRK05632 phosphate acetyltrans  33.4      29 0.00074   13.9   7.6   86  309-397   359-448 (702)
276 PRK13642 cbiO cobalt transport  33.4      21 0.00052   15.0   1.2   23  526-548   177-200 (277)
277 cd02763 MopB_2 The MopB_2 CD i  33.3      29 0.00074   13.9   7.1   53  338-390   423-483 (679)
278 cd03234 ABCG_White The White s  33.2      29 0.00074   13.9   2.2   39  525-564   179-217 (226)
279 cd06113 citrate_synt_like_1_2   32.9      29 0.00075   13.9   4.0   61  379-441   195-261 (406)
280 TIGR02982 heterocyst_DevA ABC   32.9      29 0.00075   13.9   3.1   37  334-370    27-67  (220)
281 COG1648 CysG Siroheme synthase  32.7      30 0.00076   13.8   6.0   66  291-358    73-140 (210)
282 TIGR01405 polC_Gram_pos DNA po  32.6      30 0.00076   13.8   3.4  127  244-390   488-620 (1264)
283 PRK13651 cobalt transporter AT  32.5      22 0.00056   14.7   1.2   18  581-599   266-283 (304)
284 COG0731 Fe-S oxidoreductases [  32.5      30 0.00076   13.8   4.2   37  339-375    80-120 (296)
285 TIGR01553 formate-DH-alph form  32.4      30 0.00076   13.8   6.0  108  286-395   163-291 (1043)
286 COG1435 Tdk Thymidine kinase [  32.3      30 0.00077   13.8   3.3   59  343-404    11-72  (201)
287 PRK09536 btuD corrinoid ABC tr  32.0      29 0.00074   13.9   1.8   29  187-215   192-220 (409)
288 cd01480 vWA_collagen_alpha_1-V  31.8      31 0.00078   13.8   6.5   61  468-546    83-147 (186)
289 cd03292 ABC_FtsE_transporter F  31.8      30 0.00077   13.8   1.9   25  525-549   172-196 (214)
290 cd03270 ABC_UvrA_I The excisio  31.7      31 0.00078   13.7   2.2   38  525-565   175-212 (226)
291 PRK13636 cbiO cobalt transport  31.4      31 0.00079   13.7   3.2   18  581-598   247-264 (285)
292 KOG2495 consensus               31.4      31 0.00079   13.7   2.8   67  247-318   180-248 (491)
293 TIGR03269 met_CoM_red_A2 methy  30.9      32  0.0008   13.7   2.2   30  186-215   222-251 (520)
294 cd02764 MopB_PHLH The MopB_PHL  30.9      32 0.00081   13.7   5.9   94  364-472   233-327 (524)
295 pfam08493 AflR Aflatoxin regul  30.8      32 0.00081   13.6   3.9   33  567-599   215-247 (275)
296 cd03219 ABC_Mj1267_LivG_branch  30.7      23 0.00058   14.7   1.1   24  525-548   179-202 (236)
297 cd01674 Homoaconitase_Swivel H  30.6      32 0.00082   13.6   2.0   41  297-345    56-100 (129)
298 PRK08202 purine nucleoside pho  30.5      22 0.00057   14.7   1.0   26  352-377    92-117 (272)
299 cd01411 SIR2H SIR2H: Uncharact  30.5      32 0.00082   13.6   4.1   49  337-387   171-219 (225)
300 pfam08645 PNK3P Polynucleotide  30.4      32 0.00082   13.6   3.0   25  351-375    32-56  (158)
301 COG2179 Predicted hydrolase of  30.2      32 0.00083   13.6   3.2   46  337-383    36-81  (175)
302 cd02752 MopB_Formate-Dh-Na-lik  30.2      33 0.00083   13.6   7.7   12  293-304   275-286 (649)
303 PRK10261 glutathione transport  30.1      33 0.00083   13.6   1.9   30  185-214   221-250 (623)
304 KOG2535 consensus               30.0      33 0.00083   13.6   1.8   53  347-399   201-257 (554)
305 TIGR00080 pimt protein-L-isoas  30.0      32 0.00081   13.6   1.7   33  312-346    29-61  (228)
306 PRK12311 rpsB 30S ribosomal pr  30.0      33 0.00083   13.6   7.5   47  338-390   160-206 (332)
307 COG0066 LeuD 3-isopropylmalate  30.0      23  0.0006   14.6   1.0   42  297-346    73-118 (191)
308 KOG1985 consensus               29.7      33 0.00084   13.5   2.8   27  130-156   396-422 (887)
309 TIGR03315 Se_ygfK putative sel  29.5      33 0.00085   13.5   2.0   66  291-367   538-604 (1012)
310 TIGR01771 L-LDH-NAD L-lactate   29.4      33 0.00085   13.5   3.9  148  155-325    10-164 (302)
311 cd01427 HAD_like Haloacid deha  29.2      28 0.00071   14.0   1.3   27  349-375    25-51  (139)
312 KOG2969 consensus               29.2      34 0.00086   13.5   3.7   25  346-370    44-69  (264)
313 PRK07116 flavodoxin; Provision  28.7      34 0.00087   13.4   3.7   32  338-371     2-33  (158)
314 PRK01710 murD UDP-N-acetylmura  28.5      35 0.00088   13.4   6.8   39   90-131    77-115 (458)
315 PRK05868 hypothetical protein;  28.5      35 0.00088   13.4   3.7   13   42-54     50-62  (372)
316 PRK13634 cbiO cobalt transport  28.3      29 0.00074   13.9   1.3   20  580-599   237-256 (276)
317 PRK11231 fecE iron-dicitrate t  28.1      35 0.00089   13.3   1.9   23  526-548   175-197 (255)
318 PRK13637 cbiO cobalt transport  28.1      28 0.00071   14.0   1.1   17  580-597   249-265 (287)
319 TIGR01394 TypA_BipA GTP-bindin  28.0      27 0.00069   14.1   1.1   93  122-221   185-292 (609)
320 pfam09194 Endonuc-BsobI Restri  27.9      35  0.0009   13.3   4.6  118  344-480   164-284 (316)
321 PHA01735 hypothetical protein   27.9      35  0.0009   13.3   1.7   36  346-384    26-63  (76)
322 PRK07432 5'-methylthioadenosin  27.9      22 0.00056   14.7   0.6   42  345-386   163-204 (290)
323 PRK00028 infC translation init  27.6      36 0.00091   13.3   3.6   48  340-387    19-69  (175)
324 PRK10908 cell division protein  27.6      36 0.00092   13.3   1.7   26  524-549   172-197 (222)
325 TIGR01070 mutS1 DNA mismatch r  27.3      36 0.00093   13.2   2.5   29  383-413   602-630 (863)
326 PRK11288 araG L-arabinose tran  27.2      36 0.00093   13.2   3.3   29  186-214   193-221 (501)
327 PRK12778 putative bifunctional  27.2      30 0.00078   13.8   1.2   68  289-367   438-506 (760)
328 PRK04663 murD UDP-N-acetylmura  27.2      36 0.00093   13.2   5.5   37   90-129    68-104 (438)
329 TIGR01007 eps_fam capsular exo  27.1      37 0.00093   13.2   6.3   27  462-488    94-123 (207)
330 PRK07823 5'-methylthioadenosin  27.0      24  0.0006   14.5   0.6   41  346-386   156-196 (264)
331 TIGR03169 Nterm_to_SelD pyridi  26.8      37 0.00094   13.2   2.7   13  289-301   144-156 (364)
332 COG1763 MobB Molybdopterin-gua  26.7      37 0.00095   13.2   4.3   55  341-395     7-63  (161)
333 TIGR02773 addB_Gpos ATP-depend  26.7      37 0.00095   13.2   5.9  211  285-510   602-850 (1192)
334 TIGR00337 PyrG CTP synthase; I  26.5      37 0.00095   13.1   1.7   21  351-371   389-409 (571)
335 PRK09984 phosphonate/organopho  26.5      31 0.00078   13.7   1.1   11  341-351    35-45  (262)
336 PRK00758 GMP synthase subunit   26.4      38 0.00096   13.1   5.8   74  292-371     1-74  (184)
337 KOG0898 consensus               26.3      25 0.00063   14.4   0.6   25   87-111    94-118 (152)
338 COG4618 ArpD ABC-type protease  26.3      38 0.00096   13.1   2.5   25  527-551   510-534 (580)
339 COG1806 Uncharacterized protei  26.1      38 0.00097   13.1   2.3   33  337-369   145-178 (273)
340 cd01577 IPMI_Swivel Aconatase-  26.0      38 0.00097   13.1   1.6   42  297-346    28-73  (91)
341 PRK05638 threonine synthase; V  26.0      38 0.00097   13.1   4.9   23  348-370   281-303 (443)
342 TIGR02865 spore_II_E stage II   25.9      38 0.00098   13.1   9.8   12  509-520   690-701 (794)
343 TIGR00368 TIGR00368 Mg chelata  25.8      22 0.00056   14.8   0.3  102   91-213   140-247 (505)
344 TIGR01918 various_sel_PB selen  25.7      39 0.00099   13.0   3.4   87  295-399   313-402 (433)
345 cd01746 GATase1_CTP_Synthase T  25.6      39 0.00099   13.0   2.2   52  335-386    53-106 (235)
346 pfam03618 DUF299 Domain of unk  25.5      39 0.00099   13.0   3.3   35  337-375   138-172 (255)
347 TIGR02860 spore_IV_B stage IV   25.4      32 0.00082   13.6   1.1   30   86-115   142-177 (423)
348 pfam05896 NQRA Na(+)-transloca  25.3      39   0.001   13.0   7.2   24  173-196    52-75  (257)
349 PRK10637 cysG siroheme synthas  25.3      39   0.001   13.0  11.4   77  289-371   214-300 (457)
350 PRK13640 cbiO cobalt transport  25.2      39   0.001   13.0   2.2   23  526-548   181-204 (283)
351 COG0290 InfC Translation initi  25.0      40   0.001   13.0   3.9   48  341-388    21-71  (176)
352 cd04885 ACT_ThrD-I Tandem C-te  25.0      40   0.001   13.0   3.1   41  326-367    26-66  (68)
353 pfam05176 ATP-synt_10 ATP10 pr  24.8      26 0.00067   14.2   0.5   14  503-516   220-233 (255)
354 cd03246 ABCC_Protease_Secretio  24.7      40   0.001   12.9   2.1   23  527-549   134-156 (173)
355 cd03213 ABCG_EPDR ABCG transpo  24.6      40   0.001   12.9   2.2   25  524-548   146-170 (194)
356 PRK01641 leuD isopropylmalate   24.4      31  0.0008   13.7   0.9   42  297-346    78-123 (201)
357 KOG3015 consensus               24.2      34 0.00086   13.4   1.0   18  389-406   208-225 (283)
358 TIGR02919 TIGR02919 conserved   24.1      41  0.0011   12.8   3.7  128  325-456   273-439 (448)
359 COG3845 ABC-type uncharacteriz  23.8      38 0.00096   13.1   1.2   26  187-212   194-219 (501)
360 TIGR01487 SPP-like SPP-like hy  23.8      42  0.0011   12.8   2.1   39  350-389    22-60  (223)
361 COG0634 Hpt Hypoxanthine-guani  23.7      42  0.0011   12.8   1.5   14  358-371   114-127 (178)
362 PRK13639 cbiO cobalt transport  23.6      42  0.0011   12.8   3.9   23  580-602   241-263 (275)
363 TIGR01116 ATPase-IIA1_Ca calci  23.5      42  0.0011   12.8   2.8  116  249-375   359-493 (800)
364 COG0556 UvrB Helicase subunit   23.4      43  0.0011   12.7   4.6   68   91-173    59-141 (663)
365 PRK11264 putative amino-acid A  23.3      43  0.0011   12.7   3.9   13  339-351    30-42  (248)
366 PRK08666 5'-methylthioadenosin  23.2      31 0.00079   13.7   0.6   41  346-386   159-199 (261)
367 TIGR01138 cysM cysteine syntha  23.1      43  0.0011   12.7   5.1   89  299-394    68-161 (300)
368 COG0444 DppD ABC-type dipeptid  23.1      43  0.0011   12.7   2.1   39  353-392   192-231 (316)
369 cd06105 ScCit1-2_like Saccharo  23.0      43  0.0011   12.7   5.4   88  380-472   220-313 (427)
370 PRK07504 O-succinylhomoserine   22.9      43  0.0011   12.7  10.3  145  316-470   128-292 (397)
371 pfam08436 DXP_redisom_C 1-deox  22.8      22 0.00057   14.7  -0.2   18  287-304    20-37  (84)
372 TIGR01697 PNPH-PUNA-XAPA inosi  22.7      44  0.0011   12.7   2.1   75  301-389    38-122 (266)
373 PRK06186 hypothetical protein;  22.7      44  0.0011   12.7   2.1   25  350-374    68-92  (229)
374 KOG2947 consensus               22.5      44  0.0011   12.6   2.9   15  293-307   254-268 (308)
375 COG1134 TagH ABC-type polysacc  22.5      44  0.0011   12.6   1.8   27  523-549   181-207 (249)
376 PRK06062 hypothetical protein;  22.3      31  0.0008   13.7   0.5   29  342-371   250-279 (434)
377 COG1635 THI4 Ribulose 1,5-bisp  22.2      45  0.0011   12.6   3.0   28  291-322    31-58  (262)
378 PRK01390 murD UDP-N-acetylmura  22.0      45  0.0012   12.6   7.8   36   91-129    66-105 (457)
379 pfam08981 consensus             22.0      45  0.0012   12.6   3.2   28  344-373    32-59  (181)
380 PRK10619 histidine/lysine/argi  21.9      45  0.0012   12.6   3.1   24  525-548   188-211 (257)
381 cd01132 F1_ATPase_alpha F1 ATP  21.9      39 0.00098   13.1   0.9   19  355-373   114-134 (274)
382 TIGR01258 pgm_1 phosphoglycera  21.9      35 0.00088   13.4   0.7   95  213-316   103-198 (248)
383 TIGR02812 fadR_gamma fatty aci  21.8      35 0.00089   13.4   0.7   50  304-367     8-68  (275)
384 PRK10762 D-ribose transporter   21.8      46  0.0012   12.5   2.8   29  185-213   193-221 (501)
385 PRK11614 livF leucine/isoleuci  21.6      46  0.0012   12.5   1.9   24  525-548   173-196 (237)
386 TIGR00110 ilvD dihydroxy-acid   21.4      29 0.00074   13.9   0.2  245  151-403    96-382 (601)
387 COG0243 BisC Anaerobic dehydro  21.3      47  0.0012   12.5   8.2   28  365-393   462-489 (765)
388 pfam06718 DUF1203 Protein of u  21.2      47  0.0012   12.5   3.2   45   26-78     64-108 (116)
389 TIGR01163 rpe ribulose-phospha  21.1      47  0.0012   12.4   2.3   83  306-392    46-139 (216)
390 cd03215 ABC_Carb_Monos_II This  21.1      47  0.0012   12.4   2.1   24  525-548   140-163 (182)
391 KOG0685 consensus               21.0      47  0.0012   12.4   3.4   10  512-521   454-463 (498)
392 TIGR00105 L31 ribosomal protei  21.0      47  0.0012   12.4   1.4   19   84-102    42-61  (77)
393 TIGR00389 glyS_dimeric glycyl-  20.9      35 0.00089   13.4   0.5   30  301-331   302-336 (606)
394 PRK06176 cystathionine gamma-s  20.8      48  0.0012   12.4   9.1  173  296-479    92-287 (379)
395 TIGR02729 Obg_CgtA GTP-binding  20.8      45  0.0012   12.6   1.1   13  140-152   261-273 (296)
396 PRK12416 protoporphyrinogen ox  20.7      48  0.0012   12.4   3.2   10   40-49     44-53  (466)
397 PRK10372 L-ascorbate-specific   20.7      43  0.0011   12.7   1.0   27  453-479    44-70  (154)
398 COG5405 HslV ATP-dependent pro  20.7      48  0.0012   12.4   7.8  111  103-221    34-172 (178)
399 PRK04296 thymidine kinase; Pro  20.6      48  0.0012   12.4   3.8   53  339-394     5-57  (197)
400 KOG0294 consensus               20.5      48  0.0012   12.4   3.0   35  196-230   167-202 (362)
401 PRK10418 nikD nickel transport  20.5      48  0.0012   12.4   3.4   23  526-548   177-200 (254)
402 TIGR00430 Q_tRNA_tgt queuine t  20.3      49  0.0012   12.3   4.4  145  256-459   253-409 (415)
403 PRK13646 cbiO cobalt transport  20.1      49  0.0013   12.3   1.7   20  528-547   184-204 (286)
404 PRK09136 5'-methylthioadenosin  20.1      40   0.001   13.0   0.7   40  347-386   160-199 (245)
405 COG0320 LipA Lipoate synthase   20.0      14 0.00035   16.2  -1.7   38  335-375   214-252 (306)
406 COG5015 Uncharacterized conser  20.0      50  0.0013   12.3   2.0   75  175-261    30-104 (132)

No 1  
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855    Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars.   This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1726.13  Aligned_cols=607  Identities=48%  Similarity=0.766  Sum_probs=587.4

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHHHHHCCCC-CCCCEEEEEECCCCCC
Q ss_conf             669999725-01279999999976315874348999958-92999945865899887521034-7865446510454388
Q gi|254780943|r    2 CGIVGIVGR-ESVGERLFKALKRLEYRGYDSSGMATICD-GKIQCVRAQGKLSELEKELNKKP-LKGNIGIAHTRWATHG   78 (608)
Q Consensus         2 CGI~G~~~~-~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~-~~i~~~K~~g~i~~l~~~~~~~~-~~~~~gIgHtR~AT~G   78 (608)
                      |||+||++. +++.++|++||+|||||||||||||+.++ |+|.+.|..|+|.+|.+.+...+ +.|.+|||||||||||
T Consensus         1 CGIVGyiG~~~~~~~~lleGL~rLEYRGYDSAGiAv~~~~g~l~v~k~~Gk~~~L~~~~~~~~~l~g~~GIGHTRWATHG   80 (628)
T TIGR01135         1 CGIVGYIGQDRDAVPILLEGLKRLEYRGYDSAGIAVVDEEGKLFVRKAKGKVAELANKLKEKEVLSGGVGIGHTRWATHG   80 (628)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf             92599981898601556544665235576520158852897189995478658999986307762123102310002687


Q ss_pred             CCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf             997002675023--8899997681506899989999789889724761567888763432-0010267799999988751
Q gi|254780943|r   79 LPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIK-NGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        79 ~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~-~~~~~~~ai~~~~~~l~G~  155 (608)
                      +||+.|||||+|  ++||||||||||||++||++|+.+||.|.||||||||||||+++++ .+.|+++|+++++++|+|+
T Consensus        81 ~Pt~~NAHPH~d~~g~iaVVHNGIIENy~~Lr~eL~~~G~~F~S~TDTEVIaHLie~~~~~~~~~L~~A~~~~~~~L~G~  160 (628)
T TIGR01135        81 KPTDENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFSSDTDTEVIAHLIEEELRQEGGDLLEAVQKALKQLRGA  160 (628)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCEECCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             88877888722699527999778270548899899848928971367404888988984178841899999998762662


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCEEEEC-CCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCE-ECC--CCCCCCCC
Q ss_conf             222010046872389997499607760-89613661376201111103798276518897305741-003--33222100
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARKGPPLIIGH-GEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLT-IYD--SQGYEIER  231 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~gsPL~iG~-~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~-i~~--~~~~~~~~  231 (608)
                      ||+++++.++||+|++||++|||++|+ |++++|+|||.+||+.||+++++|+|||++.++++++. |+|  .+|.++.|
T Consensus       161 YA~a~~~~~~P~~l~~AR~~SPLi~Gl~G~gE~F~ASD~~All~~T~~~~~L~dGd~a~~~~d~~~~i~n~~~~g~~~~r  240 (628)
T TIGR01135       161 YALAVLHADHPETLVAARSGSPLIVGLVGDGENFVASDVTALLPYTRRVIYLEDGDIAILTKDGVREIYNIFLEGAPVSR  240 (628)
T ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEECCHHHHHHHCCEEEEECCCCEEEEECCCEEEEEECCCCCCCCCC
T ss_conf             57999831889659999637876888835712698338278873278899950688899804865899721567873022


Q ss_pred             HH--HHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC-CC---HHCCCCCCCCEEEEECCCCCCHH
Q ss_conf             01--10001210000140789999997417899999871574766452111-10---00023565510352036543079
Q gi|254780943|r  232 PI--QIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIP-NI---FNYDFANISGLLVSSCGTSYLAG  305 (608)
Q Consensus       232 ~~--~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~-~~---~~~~~~~~~~I~~vGcGTSy~Aa  305 (608)
                      ++  ..++|+...++||+|+|||+|||||||++|++||.++++........ ..   ....++++++|.|||||||||||
T Consensus       241 ~~R~~~~~~~~~~aeKggy~HfMlKEIyEQP~a~~~tL~~~~~~~~~~~~~~l~~~~~~~~l~~~~~I~IvACGTSYHAG  320 (628)
T TIGR01135       241 EVRVEVIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLEGRLEEEGGVDLEELGADLAEELLKNIDRIQIVACGTSYHAG  320 (628)
T ss_pred             CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCEEEEEECCHHHHHH
T ss_conf             34415861656763478865634242267689999999876215761451126752112343155568999540168899


Q ss_pred             HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCC
Q ss_conf             99999998625667314304201001233445550577526788189999999986302--4424651178763100024
Q gi|254780943|r  306 LVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG--LTIGSLVNVLESTIARESD  383 (608)
Q Consensus       306 l~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g--~~tiaItN~~~S~la~~aD  383 (608)
                      |++|||||++++|||+|++||||+|+.+.+++++|+|+|||||||+||++|||.+|++|  ++++||||+++|+|+|+||
T Consensus       321 Lv~kY~iE~lA~iPv~Ve~ASEfRYr~~~~~~~~L~I~ISQSGETADTL~ALr~aK~~G~~~~~L~IcNv~gS~l~Re~D  400 (628)
T TIGR01135       321 LVAKYLIERLAGIPVEVEVASEFRYRKPVVDKKTLVIAISQSGETADTLEALRLAKELGLYAKTLGICNVPGSTLTREAD  400 (628)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
T ss_conf             99999999861897289984120013677588765999974861088999999998479851589998368753357877


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1013674200110007888999999999999977621200-157763227999875999999999767744677987420
Q gi|254780943|r  384 FIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYI-NEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAK  462 (608)
Q Consensus       384 ~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i-~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~  462 (608)
                      .+|+++||||||||||||||+|+++|++|++++|+.+|.+ +.++..++.+.|+.+|+.++++|...++.++++|++|.+
T Consensus       401 ~~L~t~AGpEIGVAsTKaFt~Ql~~L~~L~~~~a~~~g~~~~~~~~~~~~~~L~~lP~~~~~~l~~~~~~i~~~A~~~~~  480 (628)
T TIGR01135       401 HTLYTRAGPEIGVASTKAFTAQLTVLYLLALALAKARGTLSDAEEEAELVDALRRLPELVEQVLKAQDEKIAELAEKYAD  480 (628)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             87765069711145458899999999999999998537555878999999998750699999870456689999999731


Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCE
Q ss_conf             3614552136644999999999999742211442324314463788079871899944801-468899999999827980
Q gi|254780943|r  463 CQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDR-FFQKTLSNIQEIVTRGGR  541 (608)
Q Consensus       463 ~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~-~~~k~~s~~~Ei~arg~~  541 (608)
                      .++|||||||.+||+||||||||||+||||||||||||||||||||||+|+|||+++|++. +++|++||++|++||||+
T Consensus       481 ~~~flFlGRg~~YPiALEGALKLKEISYIHAEgYpAGElKHGPiALid~~~PVva~ap~~~Gl~~K~~SNv~Ev~ARga~  560 (628)
T TIGR01135       481 KRNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSGLLEKTKSNVEEVKARGAR  560 (628)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             68738983557770232354466565456524544553456850033188708998278898507778889988726963


Q ss_pred             EEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             89995653210001346627986887815665899-99999999999998387798897986475379
Q gi|254780943|r  542 VIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVF-SLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       542 vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~-~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                      ||+|++.++.......+++.|.+|++++.++||++ +||+||||||+|+.||+|||||||||||||||
T Consensus       561 vi~~~~~~~~~~~~~~~d~~i~~P~~~~~~~P~~~l~iplQLlAYhiA~~kG~DvDkPRNLAKSVTVE  628 (628)
T TIGR01135       561 VIVLASEDDAELIAAIADDIIKLPEVEELLAPIVYLTIPLQLLAYHIALAKGTDVDKPRNLAKSVTVE  628 (628)
T ss_pred             EEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             89982577532431105458884688863041667679999999999997086436875577110049


No 2  
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00  E-value=0  Score=1508.53  Aligned_cols=602  Identities=50%  Similarity=0.804  Sum_probs=581.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      |||||||++++++.+.+++||++||||||||||||+.+++++.++|+.|+|++|++.+..+++.|++|||||||||||.|
T Consensus         1 MCGI~g~~~~~~~~~~ll~gL~~LeyRGyDSaGia~~~~~~i~~~K~~G~v~~l~~~~~~~~~~g~~gIgHtRWAThG~~   80 (604)
T PRK00331          1 MCGIVGYVGQRNAAPILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAALEEEPLPGTTGIGHTRWATHGKP   80 (604)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf             96499998580189999999998644682406799980998999978877899986650257899877827867579999


Q ss_pred             CCCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             700267502--388999976815068999899997898897247615678887634320010267799999988751222
Q gi|254780943|r   81 NKENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSI  158 (608)
Q Consensus        81 ~~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~  158 (608)
                      ++.|||||+  ++++++||||+|+||.+||++|..+||.|.|+||||||+|||+++++++.++.+|+++++++|+|+||+
T Consensus        81 s~~NAHPh~~~~~~i~vVHNGiIeN~~~lk~~L~~~g~~f~S~TDtEvi~~li~~~~~~~~~~~~A~~~~~~~l~GsyAi  160 (604)
T PRK00331         81 TERNAHPHTDCSGRIAVVHNGIIENYAELKEELEAKGYVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYAL  160 (604)
T ss_pred             CCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             87788988189999999989711479999999997879664888478999999999871999999999999865480048


Q ss_pred             HHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCC
Q ss_conf             01004687238999749960776089613661376201111103798276518897305741003332221000110001
Q gi|254780943|r  159 AVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQI  238 (608)
Q Consensus       159 ~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~  238 (608)
                      ++++.++||+||++|+||||+||++++++|+|||.+||.+||+++++|+|||+++|+++++++|+.++.+++++++.++|
T Consensus       161 ~ii~~~~P~~i~~ar~gSPLvIG~g~~~~fiaSD~~al~~~t~~~i~LeDgdia~I~~~~~~i~~~~~~~~~~~~~~i~~  240 (604)
T PRK00331        161 AVIDKDEPDTLVAARNGSPLVIGLGEGENFLASDALALLPVTRRFIYLEDGEIAVLTRDGVEIFDFDGNPVEREVYTVDW  240 (604)
T ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCEEEEECCCHHHHHHHHEEEECCCCCEEEEEEEEEEEEECCCCCCCCEEEEECC
T ss_conf             99963787459999559982898069637993282766775212797689988999833489996489771223799226


Q ss_pred             CCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             21000014078999999741789999987157476645211110000235655103520365430799999999862566
Q gi|254780943|r  239 APFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARL  318 (608)
Q Consensus       239 ~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i  318 (608)
                      ++++++||+|+|||+|||||||+++++++++|++......    ....++++++|+|+|||||||||++|+||||+++++
T Consensus       241 ~~~~~~kg~Y~HfMlKEI~EQP~~i~~tl~~ri~~~~~~~----~~~~l~~i~~I~ivaCGTSyhA~lv~ky~~E~la~i  316 (604)
T PRK00331        241 DASAAEKGGYRHFMLKEIYEQPEVIRDTLEGRLDEDGEID----LDEDLKKIDRIYIVACGTSYHAGLVAKYWIESLAGI  316 (604)
T ss_pred             CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             7444216872678999997548999999986508665222----599986377589997256899999999999996499


Q ss_pred             CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             73143042010012334455505775267881899999999863024424651178763100024101367420011000
Q gi|254780943|r  319 KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAS  398 (608)
Q Consensus       319 ~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Vas  398 (608)
                      ||.++.||||+|+++++++++++|+|||||||+||++|++.||++|++|++|||+++|+|+|++|++++++||||+||||
T Consensus       317 pv~v~~ASEFry~~~~~~~~~l~i~iSQSGET~Dtl~al~~ak~~ga~tiaIvNv~~Ssiar~sD~~i~~~aGpEi~VAS  396 (604)
T PRK00331        317 PVEVEIASEFRYRDPVLSPNTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTLARESDLVLYTHAGPEIGVAS  396 (604)
T ss_pred             CCEEEECHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEECC
T ss_conf             97288861203457776664389997578883789999999987799489860689953231458178855723574312


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf             78889999999999999776212001577632279998759999999997677446779874203614552136644999
Q gi|254780943|r  399 TKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLA  478 (608)
Q Consensus       399 TKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A  478 (608)
                      ||+||+|+++|+||++++++.++.++.++...+.++|..+|+.++++|+. ++.++++|+++.+.++++|||||++||+|
T Consensus       397 TKaftsQl~~l~llal~la~~~~~~~~~~~~~~~~~L~~lp~~i~~~l~~-~~~i~~ia~~~~~~~~~~~lGrG~~~~~A  475 (604)
T PRK00331        397 TKAFTTQLAVLYLLALALAKARGTLSAEEEADLVHELRELPALIEQVLDL-EEQIEELAEDFADKRNALFLGRGIDYPVA  475 (604)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf             30379999999999999999839999999999999999999999999853-69999999998445648997267862778


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf             99999999974221144232431446378807987189994480146889999999982798089995653210001346
Q gi|254780943|r  479 LEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPS  558 (608)
Q Consensus       479 ~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~  558 (608)
                      +||||||||+||+|||||++|||||||+||||+++|||+++|+++.++|++++++|++||||++++|+++++....+ ..
T Consensus       476 ~EgALKlKEisYihAEgy~agElKHGPiALI~~~~pvI~i~~~~~~~~k~~sn~~EikaRga~vi~i~~~~~~~~~~-~~  554 (604)
T PRK00331        476 LEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELFEKTKSNIQEVKARGARVIVIADEGDEAVED-DA  554 (604)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CC
T ss_conf             88888777666354313530230467412334998489996685158999999999997698499997588311345-66


Q ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             62798688781566589999999999999998387798897986475379
Q gi|254780943|r  559 IETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       559 ~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                      +.++.+|+++++++||+++||+||||||+|+.||+|||+|||||||||||
T Consensus       555 ~~~i~iP~~~~~l~pil~~IplQLlAY~~A~~~G~d~D~PRnLAKsVTVE  604 (604)
T PRK00331        555 DHVIEIPEVHELLAPLLYVVPLQLLAYHVALARGTDVDQPRNLAKSVTVE  604 (604)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf             36998799860166699999999999999997699989999878766549


No 3  
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=1480.69  Aligned_cols=598  Identities=36%  Similarity=0.578  Sum_probs=555.1

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCC-----HHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             96699997250127999999997631587434899995-892999945865-----899887521034786544651045
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGK-----LSELEKELNKKPLKGNIGIAHTRW   74 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~-----i~~l~~~~~~~~~~~~~gIgHtR~   74 (608)
                      -|||+||+|++++.++|++||++||||||||||||+.+ ++.+.+.|..|+     +.+|.+.+...+..+++|||||||
T Consensus        78 ~CGIvGyvg~~~a~~iLl~GL~rLEYRGYDSAGIA~~~~~~~l~~~K~~~~~~~~~i~~L~~~~~~~~~~~~iGIgHTRW  157 (691)
T PTZ00295         78 CCGIIGYVGNRDASKILLDGIEILQNRGYDSCGMSTISSDNDLKTTKYASNTTSDAIERLKSNYAHLHKNHHIGIAHTRW  157 (691)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             31079999087748999998888611552604489980899689999615544269999986553258889875643777


Q ss_pred             CCCCCCCCCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             438899700267502--388999976815068999899997898897247615678887634320010267799999988
Q gi|254780943|r   75 ATHGLPNKENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCL  152 (608)
Q Consensus        75 AT~G~~~~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l  152 (608)
                      ||||.|+++|||||+  +++++||||||||||.+||++|..+||.|.|+||||||+|||+++++++.|+.+|+++++++|
T Consensus       158 ATHG~ps~~NAHPH~d~~~~iavVHNGIIENy~eLK~~L~~~G~~F~SeTDTEVIahLi~~~~~~~~~~~~Av~~~~~~L  237 (691)
T PTZ00295        158 ATHGGKTDENAHPHLDYKERISIVHNGIIENYRELKTELLKKGIPFRSETDTEVIANLIGYFLDQGESFQDAVLSAIKQL  237 (691)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             89999998889988489999999816304479999999997889564878759999999999870999999999999971


Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCH
Q ss_conf             75122201004687238999749960776089613661376201111103798276518897305741003332221000
Q gi|254780943|r  153 TGSYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERP  232 (608)
Q Consensus       153 ~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~  232 (608)
                      +|+||+++++.++||.||++|+||||+||++++++|+|||..||.+||++|++|+|||++.|+++++..++.     .++
T Consensus       238 ~GsyAiavi~~~~P~~ii~aR~gSPLvIG~g~~e~fiASD~~Al~~~T~~vi~LeDgdia~I~~d~i~~~~~-----~~~  312 (691)
T PTZ00295        238 QGTWGIAVIHKDHPDEMILARNGSPLLIGFKDDEIFIASEHSALFMFTNEYISLKNGEIASLSKDGINDLKD-----LSR  312 (691)
T ss_pred             CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCEEEECCCHHHHHHHCCEEEEECCCEEEEEECCCEEEEEC-----CCC
T ss_conf             683059999717997599996699747980598379720779988746869995698099995685000113-----671


Q ss_pred             HHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHH--CCCCCCCCCCC-CCCH--HCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf             110001210000140789999997417899999871--57476645211-1100--002356551035203654307999
Q gi|254780943|r  233 IQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLS--HYINLSDHTII-PNIF--NYDFANISGLLVSSCGTSYLAGLV  307 (608)
Q Consensus       233 ~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~--~~~~~~~~~~~-~~~~--~~~~~~~~~I~~vGcGTSy~Aal~  307 (608)
                      +..++|+...++|++|+|||+|||||||++++++|+  +|++..+..+. .++.  ...++++++|+|+|||||||||++
T Consensus       313 v~~~~~~~~~~~k~~Y~HfMlKEI~EQP~ai~~tL~~~gri~~~~~~i~l~~l~~~~~~l~~i~rI~iVACGTSyhAglv  392 (691)
T PTZ00295        313 VESIPHETIQKSPHPYPHWTIKEIHEQPMTLSRSLNNGGRISDYNSRVKLGGLDPYKDELLKIENLILTGCGTSFYAALF  392 (691)
T ss_pred             EEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCEEEEEECCHHHHHHHH
T ss_conf             37555667750667764417999875499999999741664677770531675144899861885999985488999999


Q ss_pred             HHHHHHHHCCC-CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             99999862566-73143042010012334455505775267881899999999863024424651178763100024101
Q gi|254780943|r  308 GKFWFERLARL-KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       308 ~~~~~e~~~~i-~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      |+||||+++++ +|.++.|||| |+.+..++++++|+|||||||+||++|++.||++|+++++|||+++|+|+|++|.++
T Consensus       393 aky~~E~la~i~~V~v~~asEf-~~~~~~~~~~lvI~ISQSGETADTLaALr~AK~~G~~tlaIvNv~gSsiaReaD~~i  471 (691)
T PTZ00295        393 AKYLMRYLSCFNTVQVMDAIEI-NVSVLPKEHAGVIFISQSGETRDVIKACKLAEDLGIPKLSVVNSVGSTIARMTGCGV  471 (691)
T ss_pred             HHHHHHHHCCCCCEEEEEEHHH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHEECCEEE
T ss_conf             9999999539997689840120-145789877539997577885679999999997699389995478872530446326


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             36742001100078889999999999999776212001577632279998759999999997677446779874203614
Q gi|254780943|r  387 PIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTL  466 (608)
Q Consensus       387 ~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~  466 (608)
                      +++||||+||||||+||+|+++|++||+++++.++.++.++..+++++|..+|+.++++|+ .+++++++|+++.+.+++
T Consensus       472 ~t~AGpEIgVASTKaFtsQl~~L~llal~la~~~~~l~~~~~~~~~~~L~~lP~~i~~~L~-~~~~i~~iA~~~~~~~~~  550 (691)
T PTZ00295        472 YLNAGREVAVASTKAFSSQVSVLSLIANWFAQHRKGISSGKRRSLINSLHRLPLYLGVTLK-CEEQCKQIAEKIKNKNSI  550 (691)
T ss_pred             EECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCE
T ss_conf             8247764678704899999999999999999860898789999999999860776999986-278999999998534558


Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHH--CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             5521366449999999999997422114423243144637880--79871899944801468899999999827980899
Q gi|254780943|r  467 LYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALI--TEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       467 ~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali--~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
                      ||||||.+||+|+||||||||+||||||||++|||||||+|||  |+++|||+++|+|+.++|++||++|++||||+||+
T Consensus       551 ~fLGRG~~ypiAlEGALKLKEISYIHAEgy~AGElKHGPiALId~e~~~PVi~i~~~d~~~~k~~sni~EvkARga~vI~  630 (691)
T PTZ00295        551 FVLGKGLSYPIALEGALKIKEITYIHCEGYSGGALKHGPFALIGGEDNTPVILLILNDSNKNLMMNTAEQVKARGAHIIC  630 (691)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             99836887599999999999998885426633563678667621588970899943985088899999999976997999


Q ss_pred             EECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             9565321000134662798688781566589999999999999998387798897986475379
Q gi|254780943|r  545 ITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       545 I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                      |++++..  .....++++.+|. ++.++|++++||+||||||+|+.||+|||+|||||||||||
T Consensus       631 I~~~~~~--~~~~~~~~i~iP~-~~~l~pil~~IplQLlAY~~A~~rG~dvD~PRNLAKSVTVE  691 (691)
T PTZ00295        631 ITDDENL--CKHIADDIILIPS-NGILTALLAVIPLQLLAYYTAICKGINPDRPRCLAKTVTVD  691 (691)
T ss_pred             EECCCCH--HHHCCCCEEECCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf             9567312--1204771898899-86500799999999999999997699999999877664039


No 4  
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=1436.03  Aligned_cols=596  Identities=50%  Similarity=0.798  Sum_probs=567.6

Q ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             966999972-5012799999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r    1 MCGIVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL   79 (608)
Q Consensus         1 MCGI~G~~~-~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~   79 (608)
                      |||||||++ ++++.++|++||++||||||||||||+.+++++.++|..|++++|.+.....++.|++|||||||||||.
T Consensus         1 MCGIvG~i~~~~~~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG~   80 (597)
T COG0449           1 MCGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHGG   80 (597)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf             98689997488538999999988877067775657998178189998257787887653225667745555654467898


Q ss_pred             CCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97002675023889999768150689998999978988972476156788876343200102677999999887512220
Q gi|254780943|r   80 PNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIA  159 (608)
Q Consensus        80 ~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~  159 (608)
                      |++.|||||.+++++|||||||+||.+||++|+.+||.|.|+||||||+||++++++++  +.+|+++++++|+|+||++
T Consensus        81 P~~~NAHPh~~~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~--~~~a~~~~l~~l~Gsyal~  158 (597)
T COG0449          81 PTRANAHPHSDGEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTS--LLEAVKKVLKRLEGSYALL  158 (597)
T ss_pred             CCCCCCCCCCCCCEEEEECCHHHCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCEEEEE
T ss_conf             88577898988979999573422789999999966988856761489999999998646--9999999998714305799


Q ss_pred             HHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCC
Q ss_conf             10046872389997499607760896136613762011111037982765188973057410033322210001100012
Q gi|254780943|r  160 VIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIA  239 (608)
Q Consensus       160 il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~  239 (608)
                      ++++++||+||+||++|||++|.|++++|+|||..||++||+++++|+|||+++++++++. ++ +|. +.|+++.++|+
T Consensus       159 ~~~~~~p~~i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~-~~-~g~-v~r~~~~~~~~  235 (597)
T COG0449         159 CTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVS-IN-DGN-VLRDVPVIEWD  235 (597)
T ss_pred             EEECCCCCEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHCEEEEECCCCEEEEECCCEE-EE-CCE-EEEEEEEECCC
T ss_conf             9826999739998689985999658861586172666654146899669978999779589-85-580-66534772167


Q ss_pred             CCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             10000140789999997417899999871574766452111100002356551035203654307999999998625667
Q gi|254780943|r  240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLK  319 (608)
Q Consensus       240 ~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~  319 (608)
                      ...++||+|+|||+|||+|||+++++++++|++..... .....  .+++++||+|+|||||||||++++||||+++++|
T Consensus       236 ~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~~-~~~~~--~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ip  312 (597)
T COG0449         236 LCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQN-ELDLD--ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIP  312 (597)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf             64775399874078888743999999998654311322-20123--3345026999977688899999999999984898


Q ss_pred             CEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             31430420100123344555057752678818999999998630244246511787631000241013674200110007
Q gi|254780943|r  320 VEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST  399 (608)
Q Consensus       320 v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT  399 (608)
                      |.|+.||||+|+.+.+.+++|+|+|||||||+||++|++++|++|+++++|||+++|+|+|++|++++++||||++||||
T Consensus       313 v~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsT  392 (597)
T COG0449         313 VEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVAST  392 (597)
T ss_pred             EEEEEECHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCEEEEECCCCCEEEECC
T ss_conf             18996343455265788785799982676537899999999974997899981589832144540777546773324333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf             88899999999999997762120015776322799987599999999976774467798742036145521366449999
Q gi|254780943|r  400 KAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLAL  479 (608)
Q Consensus       400 Ksftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~  479 (608)
                      |+||+|+++|++|++++++.+|.++.++.+.++++|+.+|+.+++++. .++.++++++.|.+.++++|||||.+||+|+
T Consensus       393 KaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~-~~~~i~~~a~~l~~~~~~~~lGRG~~ypvAl  471 (597)
T COG0449         393 KAFTAQVLALYLLALYLAKQRGTISEEEERSLIKELQKLPNHIPKVLA-AEEKIKELAKRLADAKDFFFLGRGVLYPVAL  471 (597)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf             358999999999999976761754256799999999999999999971-5789999999860568789986788737676


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             99999999742211442324314463788079871899944801468899999999827980899956532100013466
Q gi|254780943|r  480 EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSI  559 (608)
Q Consensus       480 EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~  559 (608)
                      ||||||||++|+|||||++|||||||+||+|+++|||+++|++..++|+.+|++|++||||++++|++++.   ....++
T Consensus       472 EgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~---~~~~~~  548 (597)
T COG0449         472 EGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD---VAEDGD  548 (597)
T ss_pred             HHHHHHHHHEEECCCCCCCHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCCC
T ss_conf             65666554213110564001323671489739973899967625789999999999716974999945776---556675


Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             2798688781566589999999999999998387798897986475379
Q gi|254780943|r  560 ETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       560 ~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                      +.+.+|+++++++||+++||+||||||+|+.||+|||+|||||||||||
T Consensus       549 ~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~dvD~PRnLAKsVTVE  597 (597)
T COG0449         549 DLILLPEVDELLAPLLYTIPLQLLAYHIALAKGIDVDKPRNLAKSVTVE  597 (597)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf             2786688752232288889999999999997499988888656611209


No 5  
>KOG1268 consensus
Probab=100.00  E-value=0  Score=1185.94  Aligned_cols=605  Identities=39%  Similarity=0.621  Sum_probs=560.0

Q ss_pred             CCEEEEEEC------CCHHHHHHHHHHHHHHCCCCCEEEEEEEEC--CEEEEEECCCCHHHHHHHHCC------CCCCCC
Q ss_conf             966999972------501279999999976315874348999958--929999458658998875210------347865
Q gi|254780943|r    1 MCGIVGIVG------RESVGERLFKALKRLEYRGYDSSGMATICD--GKIQCVRAQGKLSELEKELNK------KPLKGN   66 (608)
Q Consensus         1 MCGI~G~~~------~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~--~~i~~~K~~g~i~~l~~~~~~------~~~~~~   66 (608)
                      |||||||.|      +..+.+.|++||+|||||||||+|+++..+  .++.++|.+|+++.|.+....      .++..+
T Consensus         1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH   80 (670)
T KOG1268           1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH   80 (670)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCCCEEEHHHHHHHCCCCCCEEEEEE
T ss_conf             94156550245677478899999988887641677888536427863344452156741200688851375645013410


Q ss_pred             EEEEEECCCCCCCCCCCCCCCEEE---CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCC---H
Q ss_conf             446510454388997002675023---8899997681506899989999789889724761567888763432001---0
Q gi|254780943|r   67 IGIAHTRWATHGLPNKENSHPHCI---EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGS---S  140 (608)
Q Consensus        67 ~gIgHtR~AT~G~~~~~NahP~~~---~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~---~  140 (608)
                      +||+||||||||.|++.|+|||.+   +.|++||||+|+||.+||..|+++|+.|.|+||||+|+.|.-+.+++..   +
T Consensus        81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~  160 (670)
T KOG1268          81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD  160 (670)
T ss_pred             EEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             35666424324887756789886899971899976702368999999996485543367258999999999861877664


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCC------------------------------------
Q ss_conf             26779999998875122201004687238999749960776089------------------------------------
Q gi|254780943|r  141 KKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGHGE------------------------------------  184 (608)
Q Consensus       141 ~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~------------------------------------  184 (608)
                      |.+.+..++++++|+||+++.....|+.++++|+||||.+|.+.                                    
T Consensus       161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~~~~  240 (670)
T KOG1268         161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLHFL  240 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             99999999998400698887764078543565258832230124664432321012265212025534775532001434


Q ss_pred             --C--CEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCC--CCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHH
Q ss_conf             --6--13661376201111103798276518897305741003332--22100011000121000014078999999741
Q gi|254780943|r  185 --G--EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQG--YEIERPIQIVQIAPFLIGKGNYRHFMEKEIYE  258 (608)
Q Consensus       185 --~--~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~--~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~E  258 (608)
                        .  +||+|||..|+.++|+++++|+|+|++.+.++.+.|...+.  ....+.+++++.+...+.||+|+|||+|||||
T Consensus       241 ~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~lsihr~~~~~~~~~R~i~tlemEl~qImKG~yd~yMqKEI~E  320 (670)
T KOG1268         241 AGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTLEMELQQIMKGNYDYYMQKEIYE  320 (670)
T ss_pred             CCCCEEEEEECCCCHHHEECCEEEEECCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             68952899706854210351315774067479984385689960354677311789999999997178637765667761


Q ss_pred             CHHHHHHHHHCCCCCCCCCC-CCCCHHC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC
Q ss_conf             78999998715747664521-1110000--23565510352036543079999999986256673143042010012334
Q gi|254780943|r  259 QPEAISRVLSHYINLSDHTI-IPNIFNY--DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVY  335 (608)
Q Consensus       259 QP~~l~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~  335 (608)
                      ||+++.+++++|++.....+ +.++.++  .+++.+|+++||||||||||++.+..||.++.+||.|+.||+|..+++++
T Consensus       321 QpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pi  400 (670)
T KOG1268         321 QPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPI  400 (670)
T ss_pred             CCHHHHHHCCCEECCCCCEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCC
T ss_conf             74577775056131466446615764411455311564799844408888777899999856975622144567507982


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             45550577526788189999999986302442465117876310002410136742001100078889999999999999
Q gi|254780943|r  336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIY  415 (608)
Q Consensus       336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~  415 (608)
                      ..++.+++|||||||+||+.|+++++++||.+++|||+.||+++|++++.+.+||||||||||||+||+|.++|.|+|++
T Consensus       401 fRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpEigvAsTKaYTSQ~i~lvm~aL~  480 (670)
T KOG1268         401 FRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQYIALVMFALW  480 (670)
T ss_pred             EECCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEECHHHHHHHHHHHHHHHH
T ss_conf             00557999926876288999999888639669987525576200233442230578744533114778999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77621200157763227999875999999999767744677987420361455213664499999999999974221144
Q gi|254780943|r  416 AGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEG  495 (608)
Q Consensus       416 l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg  495 (608)
                      ++.++- -..+...++++.|..+|+++.++|+ .++.++++|.++.+.+++.++|||++|++|+|||||+||++|+|+||
T Consensus       481 ~s~d~i-s~~~RR~eIi~gL~~l~~~ikevL~-l~~~i~~la~~l~~~~slLi~GRGy~~at~lEGAlKiKEisymHsEg  558 (670)
T KOG1268         481 MSEDRV-SKQERRKEIIDGLKDLPSQIKEVLE-LDPKIKDLAKELKDHKSLLIMGRGYNFATALEGALKIKEISYMHSEG  558 (670)
T ss_pred             HCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEEECCH
T ss_conf             641156-6889899999999876999999972-16999999999751661899616643687764223331332100010


Q ss_pred             CCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHH
Q ss_conf             23243144637880798718999448014688999999998279808999565321000134662798688781566589
Q gi|254780943|r  496 YAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIV  575 (608)
Q Consensus       496 ~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~  575 (608)
                      +.|||+||||+||+|++.|+++++++|..+.|..++++|+.||+|+.|+|+++++.... ......+++|.+-+++++++
T Consensus       559 ilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIiic~~~~~~~~-~~~~~~~~vP~tvDClQgil  637 (670)
T KOG1268         559 ILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIIICDKGDKEEQ-KAGNKTLEVPQTVDCLQGIL  637 (670)
T ss_pred             HHHCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH-CCCCEEEECCCHHHHHHHHH
T ss_conf             33144456862675488977999836755378899999998538972899538980443-24635896785445555134


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999998387798897986475379
Q gi|254780943|r  576 FSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       576 ~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                      .+||||||+|++|+.||+|+|.|||||||||||
T Consensus       638 ~viPlQLlsyhlav~rg~~vD~PRnlAkSvtve  670 (670)
T KOG1268         638 NVIPLQLLSYHLAVLRGINVDFPRNLAKSVTVE  670 (670)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             340389999999998178988763100033569


No 6  
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=100.00  E-value=0  Score=693.81  Aligned_cols=335  Identities=17%  Similarity=0.256  Sum_probs=297.1

Q ss_pred             CCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             1000014078999999741789999987157476645211110-000235655103520365430799999999862566
Q gi|254780943|r  240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNI-FNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARL  318 (608)
Q Consensus       240 ~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i  318 (608)
                      ..+++||+|+|||+|||+|||+.+-+.   .     .....++ .....++++||+|+|||||||||++++||||+++++
T Consensus         8 ~~~~~~~~~~~~~~~e~~~~~~~~~~~---~-----~p~i~~~~~e~~~k~i~rI~ivaCGTSyhA~l~~ky~~E~~~~i   79 (347)
T PRK11382          8 MLDIDKSTVDFLVTENMVQEVEKVLSH---D-----VPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDL   79 (347)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             334430355057898899989999852---5-----67788999998737998799997508899999999999998699


Q ss_pred             CCEEEECCHHHCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7314304201001233-445550577526788189999999986302442465117876310002410136742001100
Q gi|254780943|r  319 KVEIDVSSEFRYRDFV-YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA  397 (608)
Q Consensus       319 ~v~v~~asEf~y~~~~-~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va  397 (608)
                      ||.++.||||+|+.|. +++++|||+|||||||+||++|++.||++|++|++|||+++|+|+|.+|.+++++||+|.+++
T Consensus        80 pv~v~~AsEF~~~~p~~~~~~tlvI~ISQSGETaDtl~Al~~ak~~Ga~tiaitN~~~S~i~r~ad~~i~~~a~~~~~v~  159 (347)
T PRK11382         80 QVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIH  159 (347)
T ss_pred             CEEEEEHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHHCCCHHHHHH
T ss_conf             84895053420058988899869999936847299999999999869967998679988888747624754466799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf             07888999999999999977621200157763227999875999999999767744677987420361455213664499
Q gi|254780943|r  398 STKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPL  477 (608)
Q Consensus       398 sTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~  477 (608)
                      +|++|+.++..+..++.          ..+..++.++|.++|+.+.+++...++..+++++.+.+.+.+|++|||.+||+
T Consensus       160 ~~~~~~~~l~ll~~~~~----------~~~~~~~~~~L~~lp~~i~~~l~~~~~~~~~la~~~~~~~~~~~lGrG~~~pi  229 (347)
T PRK11382        160 LLLCYSVVLEMITRLAP----------NAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPL  229 (347)
T ss_pred             HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             99999999999998503----------89999999999999999999998508999999999851774599824866165


Q ss_pred             HH-HHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf             99-99999999742211442324314463788079871899944801468899999999827980899956532100013
Q gi|254780943|r  478 AL-EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDF  556 (608)
Q Consensus       478 A~-EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~  556 (608)
                      |+ ||||||||+||+|||||++|||||||+||||+++|||+++|+|++++++.++++|+++||+++++|....       
T Consensus       230 a~~EgALKLKEisYIHAegy~agElKHGPiALId~~~PVi~i~~~d~~~~~~~~~i~evkarg~~vivid~~~-------  302 (347)
T PRK11382        230 GYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAE-------  302 (347)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCC-------
T ss_conf             7999999999887775233558772677086637998679995485058999999999997599089961410-------


Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             4662798688781566589999999999999998387798897986475
Q gi|254780943|r  557 PSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSV  605 (608)
Q Consensus       557 ~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsV  605 (608)
                            ..|.++++++||+++||+||||||+|+.||+|||+||+|.|+|
T Consensus       303 ------~~~~~~~~l~Pil~~iPlQLlAY~~A~~rG~d~D~PRy~~kv~  345 (347)
T PRK11382        303 ------ISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLV  345 (347)
T ss_pred             ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             ------3677546784999999999999999997798989899887868


No 7  
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=475.23  Aligned_cols=334  Identities=27%  Similarity=0.412  Sum_probs=277.7

Q ss_pred             HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf             8999999741789999987157476645211110000-235655103520365430799999999862566731430420
Q gi|254780943|r  249 RHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNY-DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSE  327 (608)
Q Consensus       249 ~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asE  327 (608)
                      .++|++||.+||+.+++.+....     .....+.+. ....+++|+++|||||+|+++.++|++++.++.++....+||
T Consensus         2 ~~~m~~e~~~~p~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se   76 (340)
T COG2222           2 STLMLREIEQQPAVVARLLEANR-----AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASE   76 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEECHHH
T ss_conf             43468999860999999988636-----7899999999727974899981586288999999999986176035305368


Q ss_pred             HHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             100123-3445550577526788189999999986302442465117876310002410136742001100078889999
Q gi|254780943|r  328 FRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQL  406 (608)
Q Consensus       328 f~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql  406 (608)
                      |.++.+ .+.+++++|.+||||+|+|++.+++.||+.|+++++|||.++|+|++.+|+.+++.+|+|.+|+.||+|++++
T Consensus        77 ~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~~~~  156 (340)
T COG2222          77 FLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASL  156 (340)
T ss_pred             HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             76168534689818999837899879999999852179769999637898456449733542777068899999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf             99999999977621200157763227999875999999999767744677987420361455213664499999999999
Q gi|254780943|r  407 LVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK  486 (608)
Q Consensus       407 ~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk  486 (608)
                      ++++.+...            +.+....+..+++...+..+..+...++++..+.+.+++|++|||..||+|.|.|||+|
T Consensus       157 ~a~l~~~a~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~aLkl~  224 (340)
T COG2222         157 LALLALLAE------------YDGDAQLLAALPDLPLEAAKALEEDAQEFAEEYADEDRIYTLGSGPLYGAAYEAALKLK  224 (340)
T ss_pred             HHHHHHHHH------------HCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             999888764------------41310455665112599999866778999997358977999778521799999999999


Q ss_pred             HHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCC
Q ss_conf             97422114423243144637880798718999448014688999999998279808999565321000134662798688
Q gi|254780943|r  487 EISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPS  566 (608)
Q Consensus       487 E~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~  566 (608)
                      |++++|+++|+++||+|||+++|++++||+++.+.|++.+-....+++++.+|++|++|...+.       ....+..+.
T Consensus       225 E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~~ga~v~vi~a~~~-------~~~~~~~~~  297 (340)
T COG2222         225 EMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKDA-------ALDLIDQRV  297 (340)
T ss_pred             HHCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCC-------CCCCCCCCC
T ss_conf             8704001551134101475977379952999944874045799999999860886999747665-------667777122


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf             7815665899999999999999983877988979--8647537
Q gi|254780943|r  567 MGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRN--LAKSVTV  607 (608)
Q Consensus       567 ~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRn--LaKsVTV  607 (608)
                      .+++..||++++|+|+|+|++|+.||.|||.||+  |-| ||+
T Consensus       298 ~~~l~~~~~~~~v~~~~~~~~a~~rg~~pd~pr~~~~~k-v~~  339 (340)
T COG2222         298 RHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVK-VTR  339 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE-EEE
T ss_conf             413667888878999999999986199999998366243-531


No 8  
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source.  The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00  E-value=0  Score=478.61  Aligned_cols=213  Identities=52%  Similarity=0.865  Sum_probs=207.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r    2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN   81 (608)
Q Consensus         2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~   81 (608)
                      |||||+++++++.+.+++||.+||||||||+||++.+++++.+.|..|+|+++.+.....++.|++|||||||||||.++
T Consensus         1 CGI~G~~~~~~~~~~l~~~L~~LqhRG~Ds~Gi~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~g~~gIGHtR~aT~G~~~   80 (215)
T cd00714           1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPT   80 (215)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf             97999988854699999999975468854152899819989999816833456655311367886788474434689987


Q ss_pred             CCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00267502--3889999768150689998999978988972476156788876343200102677999999887512220
Q gi|254780943|r   82 KENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIA  159 (608)
Q Consensus        82 ~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~  159 (608)
                      +.|||||.  ++++++||||+|+||.|||++|+++|+.|.|+||||||+|||+++++++.++.+|+++++++++|+||++
T Consensus        81 ~~NaqP~~s~~~~i~lvhNG~I~N~~eLr~~L~~~g~~f~s~sDtEvi~~Li~~~~~~~~~~~~ai~~~~~~l~G~ya~~  160 (215)
T cd00714          81 DVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALA  160 (215)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             55787869799989999888244778999999977988258995799999999998619987999999997603021888


Q ss_pred             HHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf             1004687238999749960776089613661376201111103798276518897
Q gi|254780943|r  160 VIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAII  214 (608)
Q Consensus       160 il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i  214 (608)
                      +++.++|++||++|+++||++|++++.+++|||++||..++++|++|+|||+++|
T Consensus       161 i~~~~~~~~l~~~R~~~PL~~g~~~~~~~~aSE~~Al~~~~~~~~~l~~geiv~I  215 (215)
T cd00714         161 VISKDEPDEIVAARNGSPLVIGIGDGENFVASDAPALLEHTRRVIYLEDGDIAVI  215 (215)
T ss_pred             EEECCCCCCEEEECCCCCEEEEEECCEEEEEECHHHHHHHCCEEEEECCCCEEEC
T ss_conf             9973899808997599978999819999999788998884586999789969969


No 9  
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of  glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP,  resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00  E-value=0  Score=421.81  Aligned_cols=220  Identities=30%  Similarity=0.517  Sum_probs=200.8

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r    2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN   81 (608)
Q Consensus         2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~   81 (608)
                      |||||+++++++.+.+++||.+||||||||+||++.+++++.+.|+.|+|+++.+....+.++|++|||||||||||.++
T Consensus         1 CGI~Gi~~~~~~~~~l~~gL~~LqHRG~dsaGIa~~d~~~i~~~K~~G~V~~vf~~~~~~~l~G~~gIGH~RysT~G~~~   80 (252)
T cd00715           1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSS   80 (252)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             97999988866799999999987037823276899839989999769846554424443237774897676322269971


Q ss_pred             CCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             00267502----38899997681506899989999789889724761567888763432001026779999998875122
Q gi|254780943|r   82 KENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYS  157 (608)
Q Consensus        82 ~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya  157 (608)
                      ..|||||.    .+++++||||+|+||.+||++|+.+|+.|.|+||||||+|||++.+++ .++.+++++++++++|+||
T Consensus        81 ~~naqP~~~~~~~g~ialvHNG~I~N~~eL~~~l~~~g~~f~s~sDTEvI~~li~~~~~~-~~~~~~i~~~~~~l~Gays  159 (252)
T cd00715          81 LENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAK-DDLFEAIIDALERVKGAYS  159 (252)
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCEE
T ss_conf             004787441589976999995388899999999985699876588899999999865410-5299999999996121258


Q ss_pred             HHHHCCCCCCEEEEEE--CC-CCEEEEC-CCCCEEEECCCCCCCCCC-CEEEECCCCEEEEEECCCCEECCCC
Q ss_conf             2010046872389997--49-9607760-896136613762011111-0379827651889730574100333
Q gi|254780943|r  158 IAVIFEDDPHSIIVAR--KG-PPLIIGH-GEGEMFVGSDVTALTLLT-DKVTYMEDGDWAIIRNSGLTIYDSQ  225 (608)
Q Consensus       158 ~~il~~~~p~~i~~ar--~g-sPL~iG~-~~~~~~vaSd~~al~~~t-~~~~~L~dgei~~i~~~~~~i~~~~  225 (608)
                      +++++.   +.||++|  .| .||++|+ +++.+++|||.+||.... +.+..|++||++.|++++++.+...
T Consensus       160 l~~l~~---~~l~~~RD~~GirPL~~G~~~~~~~~vASEs~Al~~~g~~~irev~pGEiv~i~~~g~~~~~~~  229 (252)
T cd00715         160 LVIMTA---DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESSQRA  229 (252)
T ss_pred             EEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCEEEEECCCCEEEEEECCCCEEEECC
T ss_conf             999998---9899998888887659999249808998535656305865999718983899958971999807


No 10 
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=411.68  Aligned_cols=216  Identities=25%  Similarity=0.453  Sum_probs=195.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      ||||||+++++++.+.++.||..||||||||+||++.+++++...|..|.++++.+.-....++|++|||||||||||.+
T Consensus         1 MCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~k~~GlV~~vf~~~~l~~l~G~~~IGHvRYsT~G~~   80 (445)
T PRK08525          1 MCAVVGVINSKNAAKYAYYALFAMQHRGQEASGISVSNGKKIKTIKARGLVTQVFNPDKLKTLKGESAIGHNRYSTAGND   80 (445)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHCCHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf             97599998885239999999998644661401699985998999967887777328103532888589977105679999


Q ss_pred             CCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             7002675023----889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   81 NKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        81 ~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      +..|||||..    |++++||||+|+|+.+||++|+++|+.|.|+||||+|+|||...  ...++.+++++++++++|+|
T Consensus        81 s~~naQP~~~~~~~G~iaivHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~--~~~~~~~~i~~~~~~i~GaY  158 (445)
T PRK08525         81 SILDAQPIFARYDLGEIAIVHNGNLVNKEEVRSRLIQDGAIFQTNMDTENIIHLIARS--KKESLKDRIIEALKKIIGAY  158 (445)
T ss_pred             CCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCE
T ss_conf             6336798872489988999993376089999999986897144656667889999865--03568999999998545628


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEEC-CCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEE
Q ss_conf             220100468723899974--9-9607760-89613661376201111-1037982765188973057410
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGH-GEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTI  221 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~-~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i  221 (608)
                      |++++..   +.+|++|.  | .||++|+ +++.|++|||.+||... .+.+..+++||++.|++++.++
T Consensus       159 slvil~~---~~l~~~RDp~GiRPL~lGk~~~~~yivASEs~Al~~ig~~~irdv~PGEiv~i~~~~~~~  225 (445)
T PRK08525        159 CLVLLSR---DKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLVGAEFIRDVKPGEMLIFEEGNDEF  225 (445)
T ss_pred             EEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCCEE
T ss_conf             9999869---989999897777643899966976999975244424597799834898799998799739


No 11 
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=407.81  Aligned_cols=219  Identities=27%  Similarity=0.427  Sum_probs=199.5

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      +|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.|+++.+.-..+.+.|++|||||||||||.+
T Consensus        11 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqeSaGIa~~d~~~i~~~K~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~G~~   90 (471)
T PRK06781         11 ECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGS   90 (471)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCCC
T ss_conf             75389998881239999999998735751330699987987999807860756407141541898789999724789999


Q ss_pred             CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      +..|||||.    .+++++||||+|+|+.+||++|+.+|+.|+|+||||||+|||++..  ..++.++++.++++++|+|
T Consensus        91 ~~~naQP~~~~~~~g~ialaHNGnl~N~~eLr~~L~~~G~~f~s~sDTEvI~~lia~~~--~~~~~~~i~~~~~~i~GAY  168 (471)
T PRK06781         91 EVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRST--KDSLIESVKEALNKVKGAF  168 (471)
T ss_pred             CCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCCE
T ss_conf             74358998830689889999950451999999999975986766770999999998623--4689999999998657718


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf             220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS  224 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~  224 (608)
                      |++++..   +.+|++|.  | .||++|+.++.|++|||.+||... .+.+..+++||++.|+++++.....
T Consensus       169 Slvil~~---~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~~~~~~  237 (471)
T PRK06781        169 AYLLLTG---NEMIVALDPNGFRPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRF  237 (471)
T ss_pred             EEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf             9999989---97999989887751499970998999965135422397699816996599994895789964


No 12 
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=404.12  Aligned_cols=220  Identities=27%  Similarity=0.448  Sum_probs=198.4

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             669999725-0127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    2 CGIVGIVGR-ESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         2 CGI~G~~~~-~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      |||||+++. +++...++.||..|||||||||||++.+++++...|+.|.|+++++.-..+.+.|++|||||||+|+|..
T Consensus        29 CGVfGi~s~~~~va~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~~vF~~~~l~~L~G~~gIGHvRYsT~G~~  108 (495)
T PRK07349         29 CGVFGIYAPGEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSS  108 (495)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCHHHCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             80899975993568999999998760571500599985998999908971533069646965899788756215889999


Q ss_pred             CCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             7002675023----889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   81 NKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        81 ~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      +..|||||..    |+++++|||+|.|+.+||++|+++|+.|.|+||||||+|||...++++.++.++++.++++++|+|
T Consensus       109 ~~~NaQP~~~~~~~G~ialaHNGnL~N~~eLr~~L~~~G~~F~s~sDsEvi~~lIa~~~~~~~d~~~ai~~~~~~i~GAY  188 (495)
T PRK07349        109 RVANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFRLCQGAF  188 (495)
T ss_pred             CCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
T ss_conf             75317974886799979999943696999999999967997656760899999999987538989999999998607507


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC----EEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf             220100468723899974--9-96077608961----3661376201111-1037982765188973057410033
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE----MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS  224 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~----~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~  224 (608)
                      |++++..   +.+|++|.  | .||++|+.++.    |++|||.+||... .+.+..+++||++.|++++++.+..
T Consensus       189 Slvilt~---~~lia~RDP~GiRPL~lG~~~~~~~~~yvvASEs~Ald~lg~e~iRdv~PGEiv~I~~~g~~s~~~  261 (495)
T PRK07349        189 SLVIGTP---EGLMGVRDPNGIRPLVIGTLEENGPGRYVLASETCALDIIGADYLRDVEPGELVWITEGGLESFRW  261 (495)
T ss_pred             EEEEEEC---CEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHCCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf             9999749---869999898887523899954888857999987464204496588638998599981796368861


No 13 
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=400.51  Aligned_cols=216  Identities=30%  Similarity=0.560  Sum_probs=192.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      ||||||+++++++...+++||.+|||||||||||++.+++++.+.|..|.|+++++......++|++|||||||||+|.+
T Consensus         1 MCGIfGi~~~~~~~~~l~~gL~~LQHRGqesaGIa~~d~~~i~~~K~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~G~~   80 (503)
T PRK09246          1 MCGIVGIVGNSPVNQLIYDALTVLQHRGQDAAGIVTIDGGRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSS   80 (503)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHCCCCHHCCCCCEEEEEECCCCCCCC
T ss_conf             97699998674389999999998615654644799995998999947984533306010312888689978026568999


Q ss_pred             CCCCCCCEEEC---CEEEEECCEECCHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHHC-------CHHHHHHHHHH
Q ss_conf             70026750238---8999976815068999899997898-8972476156788876343200-------10267799999
Q gi|254780943|r   81 NKENSHPHCIE---GIAVTHNGIIENFSRLKKEHFSSQQ-VFLTETDTEVIACLLEKFIKNG-------SSKKETMQKLM  149 (608)
Q Consensus        81 ~~~NahP~~~~---~~~vvHNG~I~N~~elr~~l~~~g~-~f~s~tDsEvi~~li~~~~~~~-------~~~~~ai~~~~  149 (608)
                      +.+|||||..+   +++++|||+|.|+.+||++|..+|+ +|+|+||||+|+|||++++.+.       .++.+++++++
T Consensus        81 s~~NaQP~~~~~~~gialaHNGnI~N~~eLr~~L~~~~~~~~~t~sDsEvil~lia~~l~~~~~~~~~~~~i~~al~~~~  160 (503)
T PRK09246         81 SSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEIDRRHINTTSDSEVLLNVFAHELQKSRGLPLTPEDIFAAVAAVH  160 (503)
T ss_pred             CCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             74258970646888789998444378999999998665765467871999999999987640456898789999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC----EEEECCCCCCCCC-CCEEEECCCCEEEEEECCC
Q ss_conf             9887512220100468723899974--9-96077608961----3661376201111-1037982765188973057
Q gi|254780943|r  150 QCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE----MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSG  218 (608)
Q Consensus       150 ~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~----~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~  218 (608)
                      ++++|+||+++|..+  +.+|++|.  | .||++|+.+++    |++|||.+||... .+.+..+++||++.|++++
T Consensus       161 ~~i~GaYslv~~~~~--~~l~a~RDp~GiRPL~lGk~~~~~~~~yvvASEs~Al~~ig~~~irdv~PGEiv~I~~~G  235 (503)
T PRK09246        161 RRVRGAYAVVAMIIG--HGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG  235 (503)
T ss_pred             HHCCCCEEEEEEECC--CEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEEECCC
T ss_conf             757861699999629--749999888887642777531799834999852134540497289954898799995799


No 14 
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=399.48  Aligned_cols=219  Identities=28%  Similarity=0.452  Sum_probs=198.8

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      .|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.|+++++....+.+.|++|||||||+|+|..
T Consensus        11 eCGI~Gi~~~~d~~~~~y~GL~~LQHRGQesaGIa~~d~~~~~~~K~~GlV~~vf~~~~l~~L~G~~gIGHvRYsT~G~~   90 (475)
T PRK07631         11 ECGVFGIWGHEEAAQITYYGLHSLQHRGQEGAGIVVTDGEKLSAHKGLGLVTEVFQNGELDKLKGKGAIGHVRYATAGGG   90 (475)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCCCHHHCCCCCEEEEEEECCCCCCC
T ss_conf             76289999880229999999998624760232799983998999917983655308350531888689999765778999


Q ss_pred             CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      +.+||||+.    .|+++++|||+|+|+.+||++|+.+|+.|+|+||||||+|||+..  ...++.++++.++++++|+|
T Consensus        91 ~~~naQP~~~~~~~g~ialaHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~--~~~~~~~~i~~a~~~i~GaY  168 (475)
T PRK07631         91 GYENVQPLLFRSQNGSLALAHNGNLVNATQLKQQLENQGSIFQTTSDTEVLAHLIKRS--GHFTLKEQIKNALSMLKGAY  168 (475)
T ss_pred             CCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHCCEE
T ss_conf             7535899884279997999997654799999999996798543378589999999853--58989999999999612608


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf             220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS  224 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~  224 (608)
                      |++++..   +.+|++|.  | .||++|+.++.+++|||.+||... .+.+..+++||++.|++++++....
T Consensus       169 Slvil~~---~~l~~~RDp~GiRPL~~Gk~~~~~~vASEs~Al~~~g~~~irdv~PGEiv~I~~~g~~s~~~  237 (475)
T PRK07631        169 AFLIMTE---TEMIVALDPNGLRPLSLGRLGDAYVVASETCAFDVIGATYLREVEPGELLIINDEGMKSERF  237 (475)
T ss_pred             EEEEECC---CEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf             9999628---73999999887643699998999999965045424597799816996699997895689953


No 15 
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=393.36  Aligned_cols=217  Identities=29%  Similarity=0.470  Sum_probs=197.0

Q ss_pred             CEEEEEECCC--HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             6699997250--12799999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r    2 CGIVGIVGRE--SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL   79 (608)
Q Consensus         2 CGI~G~~~~~--~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~   79 (608)
                      |||||+++.+  ++.+.++.||.+||||||||||||+.+++++.+.|+.|.|+++++......+.|++|||||||+|+|.
T Consensus        18 CGI~GI~~~~~~~~~~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~dvF~~~~l~~l~G~~gIGHvRYsT~G~   97 (472)
T PRK05793         18 CGVFGVFSNKEIDVASITYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGA   97 (472)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             63899996884406999999999863678775789998699899995898676741821474288738999952567899


Q ss_pred             CCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             97002675023----88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   80 PNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        80 ~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      .+.+||||+..    |+++++|||+|.|+.+||++|+++|+.|+|+||||+|+|||.+...  .++.+++++++++++|+
T Consensus        98 ~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~F~s~sDTEvI~~Lia~~~~--~~~~~~i~~~~~~i~Ga  175 (472)
T PRK05793         98 SKLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGQIFQTSIDSEVILNLIARSAK--KGLEKAVVDAIQAIKGS  175 (472)
T ss_pred             CCCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCC
T ss_conf             9743478857438999899999642069999999999608866767707899999987512--89999999999746662


Q ss_pred             HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCC-CCCEEEECCCCEEEEEECCCCEECC
Q ss_conf             2220100468723899974--9-96077608961366137620111-1103798276518897305741003
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTL-LTDKVTYMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~-~t~~~~~L~dgei~~i~~~~~~i~~  223 (608)
                      ||++++..   +.+|++|.  | .||++|+.++.+++|||.+||.. -.+.+..+++||++.|++++++.+.
T Consensus       176 Yslvil~~---~~l~a~RDp~GiRPL~~G~~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~~s~~  244 (472)
T PRK05793        176 YALVILTE---DKLIGVRDPHGIRPLCLGKIEDGYILSSESCALDTIGAEFVRDIEPGEIVIIDEDGIKSIK  244 (472)
T ss_pred             EEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEE
T ss_conf             79999879---9799997888876259987276899984430001438669981699749999589707984


No 16 
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=395.48  Aligned_cols=217  Identities=29%  Similarity=0.486  Sum_probs=196.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r    2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN   81 (608)
Q Consensus         2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~   81 (608)
                      |||||+++++++...++.||.+|||||||||||++.+++++.+.|+.|.|+++.+.. .+.+.|++|||||||+|+|..+
T Consensus        20 CGI~Gi~~~~~~~~~~~~gL~aLQHRGQESaGIa~~dg~~i~~~K~~GlV~~vf~~~-~~~l~G~~gIGHvRYsT~G~~~   98 (474)
T PRK06388         20 CAVVGFKGGINAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPA-TDPIKGIVGVGHTRYSTAGSKG   98 (474)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHCCHHHCEEEEECCCEEEEEECCCCHHHHHCHH-HHCCCCCEEEEECCCCCCCCCC
T ss_conf             638999898448999999999977235424479998399899992696989954202-1048987887367777799996


Q ss_pred             CCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             002675023----8899997681506899989999789889724761567888763432001026779999998875122
Q gi|254780943|r   82 KENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYS  157 (608)
Q Consensus        82 ~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya  157 (608)
                      .+|||||..    +.++++|||+|+|+.+||++|+.+|+.|+|+||||+|+|+|...+.+ .++.+++++++++++|+||
T Consensus        99 ~~naQP~~~~~~~g~ialaHNGNL~N~~eLr~eL~~~G~~f~s~sDtEvil~~ia~~~~~-~~~~~~i~~~~~~~~GaYs  177 (474)
T PRK06388         99 VENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISK-YGLKEGFERSMERLRGAYA  177 (474)
T ss_pred             CCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCCEEE
T ss_conf             225898475589972999984025699999977874797666667199999999986021-6999999999985676289


Q ss_pred             HHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf             20100468723899974--9-960776089613661376201111-103798276518897305741003
Q gi|254780943|r  158 IAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       158 ~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~  223 (608)
                      ++++..   +.+|++|.  | .||++|+.+++|++|||.+||... .+.+..+++||++.|+++++..+.
T Consensus       178 lv~l~~---~~l~~~RDp~GiRPL~~Gk~~~~~vvASEs~Al~~lg~~~irdV~PGEiv~I~~~g~~s~~  244 (474)
T PRK06388        178 CALMIN---DRLYAIRDPNGIRPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIF  244 (474)
T ss_pred             EEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCEEEECCCCCEEEEECCCCCEEEE
T ss_conf             999759---9199998988774217998088789995256655328627444899249997289836999


No 17 
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=389.66  Aligned_cols=218  Identities=28%  Similarity=0.478  Sum_probs=195.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887-52103478654465104543889
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEK-ELNKKPLKGNIGIAHTRWATHGL   79 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~-~~~~~~~~~~~gIgHtR~AT~G~   79 (608)
                      .|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.++++.+ ....+.+.|++|||||||+|+|.
T Consensus        11 eCGIfGi~~~~~~~~~ly~gL~aLQHRGQeSaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHvRYsT~G~   90 (484)
T PRK07272         11 ECGVFGIWGHPDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDRLTGNAAIGHVRYATAGS   90 (484)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             76079998883039999999998754770203599982998999915851756424734553277768999963477899


Q ss_pred             CCCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9700267502----388999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   80 PNKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        80 ~~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      .+.+|+||+.    .++++++|||+|.|+.+||++|+.+|+.|.|+||||||+|||+...  +.++.++++.++++++|+
T Consensus        91 ~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~f~s~sDTEvI~~LI~~~~--~~~~~~~i~~~~~~i~Ga  168 (484)
T PRK07272         91 ASIENIQPFLYHFHDGQVALCHNGNLTNAKSLRKELEKQGAIFHSSSDTEILMHLIRRSH--NPTFMGALKEALNTVKGG  168 (484)
T ss_pred             CCCCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCC
T ss_conf             974358997630689868998833163999999999976982435881999999998640--688999999999972574


Q ss_pred             HHHHHHCCCCCCEEEEEEC--C-CCEEEEC-CCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf             2220100468723899974--9-9607760-89613661376201111-103798276518897305741003
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARK--G-PPLIIGH-GEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~-~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~  223 (608)
                      ||++++..   +.+|++|.  | .||++|+ +++.|++|||.+||... .+.+..+++||++.|++++++...
T Consensus       169 YSlvil~~---~~l~a~RDp~GiRPL~~Gk~~~g~yvvASEs~Al~~ig~~~irdv~PGEiv~i~~~g~~~~~  238 (484)
T PRK07272        169 FAYLLLTE---DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEFVRDVQPGEVVVIDDDGIQVDS  238 (484)
T ss_pred             EEEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCEEEEE
T ss_conf             89999859---92999989988764289995797299996625642469769984389769999579658996


No 18 
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=386.51  Aligned_cols=218  Identities=28%  Similarity=0.469  Sum_probs=196.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHC-CCCCCCCEEEEEECCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521-03478654465104543889
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELN-KKPLKGNIGIAHTRWATHGL   79 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~-~~~~~~~~gIgHtR~AT~G~   79 (608)
                      .|||||++++.++...++.||.+|||||||||||++.+++++..+|+.|.|+++.+... ...++|++|||||||+|+|.
T Consensus        13 eCGIfGi~~~~~~a~~~~~gL~aLQHRGQesaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHvRYST~G~   92 (480)
T PRK09123         13 ECGVFGIFGHPDAAAITALGLHALQHRGQEAAGIVSFDGERFHSERRLGLVGDNFTDADVIARLPGNRAIGHVRYSTTGE   92 (480)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHCCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             76289999781549999999999753785611499982998999973742012016523563389858899985678999


Q ss_pred             CCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             97002675023----88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   80 PNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        80 ~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      .+.+|+||+..    |+++++|||+|.|+.+||++|+++|+.|+|+||||||+|||+...  ..++.++++.++++++|+
T Consensus        93 ~~~~n~QP~~~~~~~g~ialahNGnI~N~~eLr~~L~~~G~~F~s~sDTEvIl~lia~~~--~~~~~e~i~~a~~~i~Ga  170 (480)
T PRK09123         93 TILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELVRRGAIFQSTSDTEVILHLIARSR--KSSFLDRFIDALRQVEGA  170 (480)
T ss_pred             CCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCC
T ss_conf             874468875822799868999724246899999999967984223781899999997622--577899999999865664


Q ss_pred             HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf             2220100468723899974--9-960776089613661376201111-103798276518897305741003
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~  223 (608)
                      ||++++..   +.+|++|.  | .||++|+.++.|++|||.+||... .+.+..+++||++.|+++++..+.
T Consensus       171 Yslvilt~---~~l~a~RDp~GiRPL~lGk~~~~yvvASEs~Al~~lg~e~irdv~PGEiv~I~~~g~~s~~  239 (480)
T PRK09123        171 YSLVALTN---KKLIGARDPLGIRPLVLGELDGSYILASETCALDIIGAEFVRDVEPGELVVIDEKGLTSIK  239 (480)
T ss_pred             EEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHCCCCCEEEEECCCCEEEEEECCCEEEEE
T ss_conf             89999989---9599998988876338998599899986300210568659995489749999689707999


No 19 
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=380.52  Aligned_cols=215  Identities=27%  Similarity=0.462  Sum_probs=192.5

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r    1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP   80 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~   80 (608)
                      .|||||+++ +++.+.++.||.+|||||||||||++.+ +++..+|..|.|+++++.-....+.|++|||||||+|+|. 
T Consensus         4 eCGIfGv~s-~d~~~~~~~GL~~LQHRGqesaGIa~~d-g~~~~~k~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~Gs-   80 (442)
T PRK08341          4 KCGIFAAYS-ENAPKKAYYGLIALQHRGQEGAGISVWK-GRIRTVKGHGLVSEVFKGGSLSSLRSNLAIGHVRYSTSGS-   80 (442)
T ss_pred             CCEEEEEEC-CCCHHHHHHHHHHHHCCCCCEEEEEEEC-CCEEEEECCCCHHHHCCCCHHHCCCCCEEEEEEECCCCCC-
T ss_conf             753899988-9628999999998616773410499999-9589994687500101514143289848998810668899-


Q ss_pred             CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                       ..|+||+.    .++++++|||+|+|+.+||++|+++|++|.|++|||+|++++...+.+..+..++++.++++++|+|
T Consensus        81 -~~n~QP~~~~~~~g~ialaHNGNI~N~~eLr~~L~~~G~~F~s~sDTEvI~~~~~~~~~~~~~~~eai~~~~~~i~GaY  159 (442)
T PRK08341         81 -LSEVQPLEVECCGYKLAIAHNGTLTNFLPLRRSYESRGFKFHSSIDTELIGVSFLNHYSELGDEFEAMREVFNEVKGAY  159 (442)
T ss_pred             -CCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
T ss_conf             -7346997423689979999823651899999999966996778670999999999987741759999999999606748


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECC
Q ss_conf             220100468723899974--9-960776089613661376201111103798276518897305741003
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~  223 (608)
                      |++++..   +.+|++|.  | .||++|+++ ++++|||.+||.....++..+++||++.|++++++...
T Consensus       160 sl~il~~---~~l~a~RDp~GiRPL~lGk~d-~~~vASEs~Al~~~g~~irdv~PGEii~i~~~~~~s~~  225 (442)
T PRK08341        160 SVAILFD---GKIIVARDPVGFRPLSYGEGD-GYYFASEDSALRMFGGEIRDVRPGEVFVVSEGEVESKV  225 (442)
T ss_pred             EEEEEEC---CEEEEEECCCCCCCEEEECCC-EEEEEECHHHHHHCCCEEEECCCCEEEEECCCCEEEEE
T ss_conf             8999979---939999898887433886187-59999513577517955897369848997599479996


No 20 
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type.  GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase),  asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS).   The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00  E-value=0  Score=373.33  Aligned_cols=210  Identities=30%  Similarity=0.405  Sum_probs=185.4

Q ss_pred             CEEEEEECCC---HHHHHHHHHHHHHHCCCC-CEEEEEEEECC---------EEEEEECCCCHHHHHHHHCCCCCCCCEE
Q ss_conf             6699997250---127999999997631587-43489999589---------2999945865899887521034786544
Q gi|254780943|r    2 CGIVGIVGRE---SVGERLFKALKRLEYRGY-DSSGMATICDG---------KIQCVRAQGKLSELEKELNKKPLKGNIG   68 (608)
Q Consensus         2 CGI~G~~~~~---~~~~~l~~~L~~Le~RG~-Ds~Gia~~~~~---------~i~~~K~~g~i~~l~~~~~~~~~~~~~g   68 (608)
                      |||||+++++   ++.+.+++||.+|||||| ||||++++++.         .+.+.|+.|.++++.+....+.++|++|
T Consensus         1 CGI~Gi~~~~~~~~~~~~~~~~L~~LqhRGq~dsaGia~~~~~~~~~~~~g~~~~~~K~~G~v~~v~~~~~l~~~~g~~~   80 (249)
T cd01907           1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHW   80 (249)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCEEEEECCCCHHHHHHHHCCCCCCCCEE
T ss_conf             97999985898754899999999997078971425799984898458634760478853788999986644002676367


Q ss_pred             EEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHH----
Q ss_conf             6510454388997002675023889999768150689998999978988972476156788876343200102677----
Q gi|254780943|r   69 IAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKET----  144 (608)
Q Consensus        69 IgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~a----  144 (608)
                      ||||||||||.++..|||||+.+++++||||+|+||.+||++|..+|+.|.|+||||||+|||+++++++.++.++    
T Consensus        81 IGH~RysT~g~~~~~~aqPf~~~~~~lvhNG~i~N~~~lr~~l~~~g~~f~s~sDsEvi~~li~~~~~~~~~~~~~~~~~  160 (249)
T cd01907          81 IAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHI  160 (249)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             63050356899864577774059886881541316999999999769972328808999999999987379837899986


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCC----CCCE
Q ss_conf             ---------------999999887512220100468723899974--9-96077608961366137620111----1103
Q gi|254780943|r  145 ---------------MQKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTL----LTDK  202 (608)
Q Consensus       145 ---------------i~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~----~t~~  202 (608)
                                     +...+.+++|+||+++++.   +.++++|.  | .||++|++++.+++|||.+||..    ..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~ldG~yal~i~~~---~~l~~~RD~~GiRPL~~g~~~~~~~vASEs~Al~~i~~~~~~~  237 (249)
T cd01907         161 IRMPEEERELLLALRLTYRLADLDGPFTIIVGTP---DGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPDRDNAK  237 (249)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC---CEEEEEEECCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCE
T ss_conf             4111111200189999988861577559999989---9469998148999869998499999996599998604857336


Q ss_pred             EEECCCCEEEEE
Q ss_conf             798276518897
Q gi|254780943|r  203 VTYMEDGDWAII  214 (608)
Q Consensus       203 ~~~L~dgei~~i  214 (608)
                      ++++++||+++.
T Consensus       238 v~e~~pGE~vv~  249 (249)
T cd01907         238 VWEPRPGEYVIW  249 (249)
T ss_pred             EECCCCCEEEEC
T ss_conf             833789868969


No 21 
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=359.77  Aligned_cols=217  Identities=25%  Similarity=0.416  Sum_probs=193.0

Q ss_pred             EEEEEC-CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             999972-5012799999999763158743489999589299994586589988752103478654465104543889970
Q gi|254780943|r    4 IVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPNK   82 (608)
Q Consensus         4 I~G~~~-~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~~   82 (608)
                      |||+++ .+++...++.||..|||||||||||++.+++++.++|+.|.|+++++....+.+.|++|||||||+|.|..+.
T Consensus         1 VfGi~~~~~~va~~~y~gL~aLQHRGQEsAGIa~~dg~~i~~~K~~GLV~~vF~e~~l~~L~G~~~IGHvRYSTtG~s~~   80 (489)
T PRK07847          1 VFGVWAPGEEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTW   80 (489)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             98995598267899999988875156141028998399899990786354405832475099858986734368999973


Q ss_pred             CCCCCEEE----C-CEEEEECCEECCHHHHHHHHHHCCCE-----EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             02675023----8-89999768150689998999978988-----97247615678887634320010267799999988
Q gi|254780943|r   83 ENSHPHCI----E-GIAVTHNGIIENFSRLKKEHFSSQQV-----FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCL  152 (608)
Q Consensus        83 ~NahP~~~----~-~~~vvHNG~I~N~~elr~~l~~~g~~-----f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l  152 (608)
                      +|+||+..    + +++++|||+|.|+.+||++|.++|..     |+|.+|||||+|||.+...+ .++.++++.+++++
T Consensus        81 ~n~QP~~~~~~~g~~iAlaHNGNL~N~~eLr~~L~~~G~i~~~~~f~s~sDTEvi~~lia~~~~~-~~i~~~i~~~~~~i  159 (489)
T PRK07847         81 ENAQPTFRNTAAGTGVALGHNGNLVNTAELAARARDLGLIAGRCPAPATTDSDLLTALLAHGAAD-STLEQAALELLPTV  159 (489)
T ss_pred             CCCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHC
T ss_conf             13788564068997289984585068999999999668743334678774799999999734676-77999999999860


Q ss_pred             HHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf             7512220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r  153 TGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS  224 (608)
Q Consensus       153 ~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~  224 (608)
                      +|+||++++..   +.+|++|.  | .||++|+.++.+++|||.+||... .+.+..+++||++.|++++++....
T Consensus       160 ~GaYslvil~~---~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~e~irdV~PGEiv~I~~~G~~s~~~  232 (489)
T PRK07847        160 RGAFCLTFMDE---HTLYAARDPYGVRPLVLGRLERGWVVASETAALDIVGASFVREIEPGELLAIDADGVRSTRF  232 (489)
T ss_pred             CCCEEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             67479999856---83999988777753278971886899955012113497599816997089981896179852


No 22 
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854    Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .  5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O   This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.  ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=100.00  E-value=0  Score=364.03  Aligned_cols=215  Identities=28%  Similarity=0.500  Sum_probs=194.2

Q ss_pred             CEEEEEECCCHHH--HHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             6699997250127--99999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r    2 CGIVGIVGRESVG--ERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL   79 (608)
Q Consensus         2 CGI~G~~~~~~~~--~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~   79 (608)
                      |||||++++.+..  ..+++||..||||||||||+++.+++++...|+.|+|+++++.-..+.++|+.++||+||+|.|.
T Consensus         1 CGV~G~~~~~~~~~~~~~YygL~aLQHRGQEsAG~~~~dg~~~~~~~~~GLV~dVF~~~~l~~L~G~~~~GHVRYSTaGs   80 (467)
T TIGR01134         1 CGVFGVVSQEEVAGAELTYYGLYALQHRGQESAGVTVSDGNKTRLHKGNGLVSDVFNEETLARLKGNVGAGHVRYSTAGS   80 (467)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCEEHCCCCHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             94785246600125557889987432104051147973697899996185002005802488634660345533732488


Q ss_pred             CCC-CCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCC--CEEEECCCHHHHHHHHHHHHH------H-CCHHHHHH
Q ss_conf             970-02675023----8899997681506899989999789--889724761567888763432------0-01026779
Q gi|254780943|r   80 PNK-ENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQ--QVFLTETDTEVIACLLEKFIK------N-GSSKKETM  145 (608)
Q Consensus        80 ~~~-~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g--~~f~s~tDsEvi~~li~~~~~------~-~~~~~~ai  145 (608)
                      ... .||||+..    |.++++|||++.|..|||++|+.+|  ++|+|++||||+.+|+...+.      . ..++++++
T Consensus        81 s~~~~naQPf~v~~~~Gg~~lAHNGNLvN~~eLr~~l~~~G~~~~F~t~~DsEV~~~l~~~e~~~~~~l~~~~~~~~~~~  160 (467)
T TIGR01134        81 SGSSENAQPFVVSSPYGGLALAHNGNLVNADELRRELEEEGDRRHFNTTSDSEVLLNLLAHELDVQNKLESDKDDLFDAV  160 (467)
T ss_pred             CCCCCCCCCCEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             87432224556522677656898787212599999998379844256487089999999613731113464314789999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-CCEEEECCCCC---EEEECCCCCCCCCCCE-EEECCCCEEEEEECCC
Q ss_conf             9999988751222010046872389997--49-96077608961---3661376201111103-7982765188973057
Q gi|254780943|r  146 QKLMQCLTGSYSIAVIFEDDPHSIIVAR--KG-PPLIIGHGEGE---MFVGSDVTALTLLTDK-VTYMEDGDWAIIRNSG  218 (608)
Q Consensus       146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar--~g-sPL~iG~~~~~---~~vaSd~~al~~~t~~-~~~L~dgei~~i~~~~  218 (608)
                      ..+++.++|+||+++|..   +.++++|  +| -||++|..+++   ++||||++||.-...+ ++.+++||++.++.++
T Consensus       161 ~~~~~~~~GAY~lv~m~~---~~l~a~RDP~G~RPLvlG~~~~g~~~y~vASE~cAld~~g~~~~RDV~PGE~v~~~~~g  237 (467)
T TIGR01134       161 AEVLERVRGAYALVAMGE---DGLVAVRDPHGVRPLVLGRLGDGGTEYVVASESCALDVLGAEFVRDVEPGEVVVTFDGG  237 (467)
T ss_pred             HHHHHHCCCEEEEEEEEC---CEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEECCCC
T ss_conf             999854474379999727---70799988867676100213578410378850278642041003304883599981895


Q ss_pred             C
Q ss_conf             4
Q gi|254780943|r  219 L  219 (608)
Q Consensus       219 ~  219 (608)
                      .
T Consensus       238 ~  238 (467)
T TIGR01134       238 K  238 (467)
T ss_pred             E
T ss_conf             5


No 23 
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=356.23  Aligned_cols=219  Identities=29%  Similarity=0.526  Sum_probs=193.4

Q ss_pred             CCEEEEEECCCH--HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCC-CCCCCEEEEEECCCCC
Q ss_conf             966999972501--2799999999763158743489999589299994586589988752103-4786544651045438
Q gi|254780943|r    1 MCGIVGIVGRES--VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK-PLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~~--~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~-~~~~~~gIgHtR~AT~   77 (608)
                      ||||||+++.++  +.+.++.||..|||||||||||++.+++++...|..|.|+++++.-... .+.|++|||||||+|.
T Consensus         4 ~CGV~Gi~~~~~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTa   83 (470)
T COG0034           4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTA   83 (470)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf             10489996477665679999999987617853133899769557998447501221271656641467612567640478


Q ss_pred             CCCCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             8997002675023----889999768150689998999978988972476156788876343200102677999999887
Q gi|254780943|r   78 GLPNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLT  153 (608)
Q Consensus        78 G~~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~  153 (608)
                      |..+..||||+..    +.++++|||++.|..+||++|.++|+.|+|++||||++|+|+..+.+ .+++++++.++++++
T Consensus        84 G~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~-~~~~~a~~~~~~~v~  162 (470)
T COG0034          84 GSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDE-DDIFEAVKEVLRRVK  162 (470)
T ss_pred             CCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHCC
T ss_conf             8865300554489369985899965753688999999986496523786089999999744020-248999999986467


Q ss_pred             HHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC-EEEECCCCCCCCC-CCEEEECCCCEEEEEECCC--CEECC
Q ss_conf             512220100468723899974--9-96077608961-3661376201111-1037982765188973057--41003
Q gi|254780943|r  154 GSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE-MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSG--LTIYD  223 (608)
Q Consensus       154 G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~-~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~--~~i~~  223 (608)
                      |+||+++|..   +.++++|+  | .||++|.-+++ +++|||++||--. .+-++.+++||+++|+.++  ++...
T Consensus       163 G~ys~v~~~~---~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~  236 (470)
T COG0034         163 GAYALVALIK---DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQ  236 (470)
T ss_pred             CCEEEEEEEC---CEEEEEECCCCCCCCEEEECCCCCEEEEECHHHHHCCCCEEEEECCCCEEEEEEECCCEEEEEE
T ss_conf             7579999987---8089997899976634411179878999430322113606999438953899983696269985


No 24 
>pfam00310 GATase_2 Glutamine amidotransferases class-II.
Probab=100.00  E-value=2.8e-45  Score=334.56  Aligned_cols=189  Identities=29%  Similarity=0.463  Sum_probs=163.5

Q ss_pred             CEEEEEECC------CHHHHHHHHHHHHHHCCCC------CEEEEEEEECC--------EEEEEECCCCHHHHHHH-HCC
Q ss_conf             669999725------0127999999997631587------43489999589--------29999458658998875-210
Q gi|254780943|r    2 CGIVGIVGR------ESVGERLFKALKRLEYRGY------DSSGMATICDG--------KIQCVRAQGKLSELEKE-LNK   60 (608)
Q Consensus         2 CGI~G~~~~------~~~~~~l~~~L~~Le~RG~------Ds~Gia~~~~~--------~i~~~K~~g~i~~l~~~-~~~   60 (608)
                      |||||++++      .++.+.++.+|.+||||||      ||+||++.++.        ++...|..|.+++.... ...
T Consensus         1 CGI~Gi~~~~~~~~~~~~~~~~~~~L~~LqHRGq~~~~~~DsaGI~~~~~~~~~~~~~~~l~~~k~~g~~~~~~~~~~~~   80 (223)
T pfam00310         1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERRLFVIRKRGEKSIVAEFYLQD   80 (223)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHCCCCEEEEEEHEEEEHHHHHHCCC
T ss_conf             95489997188885389999999999985466988889998874799667420200023034441010000101011113


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHC--
Q ss_conf             347865446510454388997002675023889999768150689998999978988972476156788876343200--
Q gi|254780943|r   61 KPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNG--  138 (608)
Q Consensus        61 ~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~--  138 (608)
                      .++.|++|||||||+|+|.++.+|||||.++++++||||+|+||.+||++|..+|+.|.|+||||+|+|||+.++..+  
T Consensus        81 ~~l~g~~gIGH~RysT~g~~~~~n~qP~~~~~~~l~HNG~i~N~~~lr~~l~~~g~~f~s~sDtE~i~~li~~~~~~~~~  160 (223)
T pfam00310        81 ERFKSALAIVHTRFSTNGFPSWENAQPFRREGWVLAHNGEINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRS  160 (223)
T ss_pred             CCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCEEEEECCEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             46674279899614668998531068542366479840037549999999996599678898599999999999970898


Q ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-CCEEEECCCC-CEEEECCC
Q ss_conf             -------10267799999988751222010046872389997--49-9607760896-13661376
Q gi|254780943|r  139 -------SSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR--KG-PPLIIGHGEG-EMFVGSDV  193 (608)
Q Consensus       139 -------~~~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar--~g-sPL~iG~~~~-~~~vaSd~  193 (608)
                             .++.++++.++++++|+||+++++.   +.++++|  .| .||++|+.++ .++||||+
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~l~G~yalv~~~~---~~l~a~RD~~GiRPL~~G~~~d~~~~vASES  223 (223)
T pfam00310       161 PDMDPEERAFYEYLAGLMEPWDGPAALVFTDG---RYVGATLDRNGLRPARYGITEDGLIVVASEA  223 (223)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECC
T ss_conf             55781388999999998614886389999989---9999998579997639999589989999588


No 25 
>KOG0572 consensus
Probab=100.00  E-value=1.3e-44  Score=329.47  Aligned_cols=221  Identities=27%  Similarity=0.425  Sum_probs=197.8

Q ss_pred             CCEEEEEECCCHH--HHHHHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             9669999725012--7999999997631587434899995-892999945865899887521034786544651045438
Q gi|254780943|r    1 MCGIVGIVGRESV--GERLFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~~~--~~~l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      ||||||++...+.  .+.|..+.-.||||||||+||++.+ .+++...|+.|.+++++..-....+.|++|||||||+|.
T Consensus         1 eCGv~Gi~~a~~~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTa   80 (474)
T KOG0572           1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTA   80 (474)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCHHHHHHCHHHHHHCCCCEEEEEEECCCC
T ss_conf             97478998248612374787646777517754554475378686699754512665525777851855402111312666


Q ss_pred             CCCCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH-----HCCHHHHHHHHH
Q ss_conf             8997002675023----8899997681506899989999789889724761567888763432-----001026779999
Q gi|254780943|r   78 GLPNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIK-----NGSSKKETMQKL  148 (608)
Q Consensus        78 G~~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~-----~~~~~~~ai~~~  148 (608)
                      |..-..|+|||..    |.++++|||++.|+.+||++|+..|+.|++++|||+|+|+|++...     +..|++.+++.+
T Consensus        81 G~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~  160 (474)
T KOG0572          81 GSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDV  160 (474)
T ss_pred             CCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHH
T ss_conf             53210255655872477227873067323669999999860750146882899999997365766224476389999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCC-----CCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCC
Q ss_conf             99887512220100468723899974--9-960776089-----613661376201111-10379827651889730574
Q gi|254780943|r  149 MQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGE-----GEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGL  219 (608)
Q Consensus       149 ~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~-----~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~  219 (608)
                      ++.+.|+||+++|..   |++|+.|.  | .||++|.-.     +.|++|||+++|... .+.++.+.+||+++|+.+++
T Consensus       161 ~~~~~g~Yslv~m~~---d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~  237 (474)
T KOG0572         161 MELLPGAYSLVFMTA---DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGV  237 (474)
T ss_pred             HHHCCCCEEEEEEEC---CEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCEEEEECCCEEEEEECCCEEEEEECCCC
T ss_conf             986677526999871---67899826888866057663389886207997230123404647987407861899855883


Q ss_pred             EECCC
Q ss_conf             10033
Q gi|254780943|r  220 TIYDS  224 (608)
Q Consensus       220 ~i~~~  224 (608)
                      +..+.
T Consensus       238 ~s~~~  242 (474)
T KOG0572         238 KSVDI  242 (474)
T ss_pred             EEEEE
T ss_conf             04543


No 26 
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate.  Asparagine synthetase B  synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=100.00  E-value=8e-40  Score=295.99  Aligned_cols=209  Identities=33%  Similarity=0.534  Sum_probs=187.5

Q ss_pred             CEEEEEECCCHHHHH----HHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             669999725012799----9999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r    2 CGIVGIVGRESVGER----LFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         2 CGI~G~~~~~~~~~~----l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      |||||+++..+....    ...++..+||||+|++|+++++++.....|..+.+.++........+.++++|||+||||+
T Consensus         1 CgI~g~~~~~~~~~~~~~~~~~~~~~~~~rg~D~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~R~at~   80 (220)
T cd00352           1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN   80 (220)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             97999989987505679999999986635773705089993990799994476302232321003568889998627306


Q ss_pred             CCCCCCCCCCEEEC--CEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             89970026750238--8999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   78 GLPNKENSHPHCIE--GIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        78 G~~~~~NahP~~~~--~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      |.++..|+|||...  +++++|||+|+|+.+||+.|..+++.|.++||||+|++++...++++ ++.+++..+++.++|+
T Consensus        81 g~~~~~n~qPf~~~~~~~~l~hNG~I~n~~~l~~~l~~~~~~~~~~tDsE~i~~l~~~~~~~~-~~~~~i~~~~~~~~G~  159 (220)
T cd00352          81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREG-GLFEAVEDALKRLDGP  159 (220)
T ss_pred             CCCCCCCCCCCEECCCCEEEEEEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_conf             998634897989189999999914776899999999866973077985999999999972418-8899999999986322


Q ss_pred             HHHHHHCCCCCCEEEEEECC---CCEEEECC-CCCEEEECCCCCCCCCC-CEEEECCCCEEE
Q ss_conf             22201004687238999749---96077608-96136613762011111-037982765188
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARKG---PPLIIGHG-EGEMFVGSDVTALTLLT-DKVTYMEDGDWA  212 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~g---sPL~iG~~-~~~~~vaSd~~al~~~t-~~~~~L~dgei~  212 (608)
                      |++++++.+ ++.++++|..   .||++|.. ++.++||||+.++.... +.+..+++|+++
T Consensus       160 ~~~i~~~~~-~~~l~~~rd~~G~rpL~~~~~~~~~~~vaSE~~~~~~~~~~~~~~l~~g~~~  220 (220)
T cd00352         160 FAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL  220 (220)
T ss_pred             EEEEEEECC-CCEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHCCCCEEEECCCCCCC
T ss_conf             469999779-9879999689998785999917998999977898864896489998998779


No 27 
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=100.00  E-value=6e-39  Score=289.91  Aligned_cols=152  Identities=50%  Similarity=0.746  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r  452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN  531 (608)
Q Consensus       452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~  531 (608)
                      +++++++++.+.++++|||||++||+|+|+||||+|++|+||+||+++||+|||++++++++|||++++++...++....
T Consensus         2 ~~~~~a~~~~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~   81 (153)
T cd05009           2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL   81 (153)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf             68999999847880899948978899999999999998998326768887137399866898679981443788889999


Q ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             999982798089995653210001346627986887815665899999999999999983877988979864753
Q gi|254780943|r  532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVT  606 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVT  606 (608)
                      +++++.+|+++++|++++...   ...+..+.+|..++.++||++++|+|+|||++|+.+|+|||+||||+|+||
T Consensus        82 ~~~~~~~~~~v~~i~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~i~~Q~la~~~a~~~G~~pD~Pr~l~k~v~  153 (153)
T cd05009          82 IKEVKARGAKVIVITDDGDAK---DLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT  153 (153)
T ss_pred             HHHHHHCCCEEEEEECCCCCC---CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             999996598499997786434---557616878997278899999999999999999980979799999686879


No 28 
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180   Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=100.00  E-value=2.1e-37  Score=279.21  Aligned_cols=334  Identities=18%  Similarity=0.252  Sum_probs=241.7

Q ss_pred             HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf             999999741789999987157476645211110000235--655103520365430799999999862566731430420
Q gi|254780943|r  250 HFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFA--NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSE  327 (608)
Q Consensus       250 hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asE  327 (608)
                      -|+.|||..||+.||++.+. ++.....+...+.+..-+  .==||+++|.|||=++|.+.+.|+.+.+|.+|.++...+
T Consensus         3 ~hTa~EI~qQP~lWR~~~~i-~q~~~~a~~aFL~PLLa~Pe~~LRIvLTGAGTSAF~G~~l~P~L~~~~G~~V~A~pTTD   81 (374)
T TIGR02815         3 VHTAREIEQQPALWRKLAEI-IQAERPALEAFLEPLLARPEEDLRIVLTGAGTSAFIGDALAPWLAKHLGLRVEAVPTTD   81 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             31278876407999999998-88899998887677760856477589856775477999999999984098158852377


Q ss_pred             HHCCCC-CC--CCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCC-----CCCCCCCCC-CCCC
Q ss_conf             100123-34--4555057752678818999999998630--24424651178763100024-----101367420-0110
Q gi|254780943|r  328 FRYRDF-VY--SSKWASLFISQSGETADTLASLRYMRTQ--GLTIGSLVNVLESTIARESD-----FIFPIKAGP-EIGV  396 (608)
Q Consensus       328 f~y~~~-~~--~~~tlvI~iSQSGeT~dti~Al~~ak~~--g~~tiaItN~~~S~la~~aD-----~~i~~~aG~-Ei~V  396 (608)
                      +.-.+. .+  +..||.|--.+||.|.|-+.|++.|.+.  .|+.+-||+|++-.|+|++.     +++.|-+|- -+|.
T Consensus        82 LV~nP~qyL~p~~PTLLvSfaRSGNSPESVAAV~LAdQ~l~ecyHL~lTCN~~G~L~r~A~~~~~~~~LLMP~~snD~sF  161 (374)
T TIGR02815        82 LVSNPAQYLDPDRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALARNAVNRSNSFALLMPEESNDRSF  161 (374)
T ss_pred             CCCCHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             77881551464554120221125887657999988742156542032223800056798724896389858743478640


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf             00788899999999999997762120015776322799987599999999976774467798742036145521366449
Q gi|254780943|r  397 ASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYP  476 (608)
Q Consensus       397 asTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~  476 (608)
                      |.|=||||++++-+++-   +      +.+.+.+..+.+....+.+.+- ...+...+.++.  ...+++++||+|..-|
T Consensus       162 AMTSSFscM~la~l~~l---g------p~~~~~~~~~~~A~~a~~~~~~-~~~~~~~~~l~~--~~~~R~~~LGSGgl~G  229 (374)
T TIGR02815       162 AMTSSFSCMMLAALAVL---G------PKTLESKEEERFAKAAECIVKE-EQWDEAAKALAA--APFERIVYLGSGGLQG  229 (374)
T ss_pred             HHHHHHHHHHHHHHHHH---C------CCCCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHC--CCCCEEEEECCCHHHH
T ss_conf             02335899999999862---5------5662114699999999888651-114256778641--8763289868851368


Q ss_pred             HHHHHHHHHHHHHH--HHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHH-HHHHHHHHHHHCC--CEEEEEECCCCC
Q ss_conf             99999999999742--211442324314463788079871899944801468-8999999998279--808999565321
Q gi|254780943|r  477 LALEGALKIKEISY--LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQ-KTLSNIQEIVTRG--GRVIFITDEEGL  551 (608)
Q Consensus       477 ~A~EgALKlkE~sy--ihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~-k~~s~~~Ei~arg--~~vi~I~~~~~~  551 (608)
                      +|.|+|||+.|+|=  +.|--=++-=|||||.++||++|.||++.+.|++.. --+-.+.|+|--+  .+||.|+.+.+.
T Consensus       230 lA~EsALK~LELTAGkv~a~~DSslGFRHGPK~~~~~~tlvVv~~S~DpYTRqYDLDLl~ELRrDn~A~~vvA~~a~~~~  309 (374)
T TIGR02815       230 LARESALKVLELTAGKVMAVYDSSLGFRHGPKSVVDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQALRVVAISAESDE  309 (374)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCEEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf             99887677664333727888866888405885136086279998526898650047999997048962568886437512


Q ss_pred             CCCCCCCCCEEECCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             0001346627986887---81566589999999999999998387798897
Q gi|254780943|r  552 KRQDFPSIETIVLPSM---GEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR  599 (608)
Q Consensus       552 ~~~~~~~~~~i~iP~~---~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR  599 (608)
                      .....   +.+.+|+.   .+..-.|-|+|-.|+||++-|+.+|+-||.|=
T Consensus       310 ~~~~g---~~~~lp~~~~~~D~~L~FPy~~faQ~~Af~~SlalG~tPDNPc  357 (374)
T TIGR02815       310 LVAEG---DAFLLPDLDEVEDVELAFPYLIFAQTLAFEKSLALGNTPDNPC  357 (374)
T ss_pred             HHCCC---CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             21378---7365689887324999989999999999999997158886678


No 29 
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=100.00  E-value=7.6e-36  Score=268.31  Aligned_cols=305  Identities=15%  Similarity=0.145  Sum_probs=214.5

Q ss_pred             HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC
Q ss_conf             99997417899999871574766452111100002356551035203654307999999998625667314304201001
Q gi|254780943|r  252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR  331 (608)
Q Consensus       252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~  331 (608)
                      |++.+..=|+-+++.+.--    .+.... ....+.+.+++|+++|||+|..+|.++++++++.+++|+.|.-..++   
T Consensus         1 m~~~~~~~~~q~~ea~~~~----~~~~~~-~~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~~y~l---   72 (328)
T PRK08674          1 MLEDYLNWPKQFEEAWEFA----YRYVLE-GIEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVRDYFL---   72 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHH----HHCCCC-CCHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC---
T ss_conf             9168885799999999778----752644-31101476572999957564899999999984479986798558879---


Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23344555057752678818999999998630244246511787631000241013674200110007888999999999
Q gi|254780943|r  332 DFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVI  411 (608)
Q Consensus       332 ~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~l  411 (608)
                      +..++++||||++||||+|.||+.|++.|+++|+++++||+  |+.|++.|+.    +.+|.+.|+++  +..+.+..++
T Consensus        73 P~~v~~~tLVIavSySGnTeETL~a~~~A~~rga~vi~Its--GG~L~~~a~~----~~~~~i~vp~g--~~pRaa~~~~  144 (328)
T PRK08674         73 PAFVDRKTLVIAVSYSGNTEETLSAVEQAKKRGAKIIAITS--GGKLAEMAKE----KGVPVIKIPGG--YQPRAAFGYL  144 (328)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHH----CCCCEEEECCC--CCHHHHHHHH
T ss_conf             98658885799982899977999999999975995899948--9706789987----79988942698--6469999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99997762120015776322799987599999999976774467798742036145521366449999999999997422
Q gi|254780943|r  412 MAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYL  491 (608)
Q Consensus       412 lal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syi  491 (608)
                      +...++..      .+.......+..+++.+...++..++..+++|+++.+...+++ |+|..+++|+++++||+|.+|+
T Consensus       145 ~~~ll~~l------~~~~~~~~~l~~~~~~l~~~~~~~~~~ak~LA~~l~~~~piiy-g~~~~~~vA~R~k~qlnEnak~  217 (328)
T PRK08674        145 FTPLLNIL------EKVSETLGVLSELAERLEENVPTLKNLAKRLASKIYGRIPVIY-GSGLTRPVAYRWKNQINENAKY  217 (328)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999999------9877677899999999887532112599999999638986899-6885579999999999887457


Q ss_pred             HCCCCCHHHCCCCCHHHHCC------CCEEEEEECCCHHHHHHH---HHHHH-HHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf             11442324314463788079------871899944801468899---99999-982798089995653210001346627
Q gi|254780943|r  492 HAEGYAAGELKHGPIALITE------GTFVIAIAPYDRFFQKTL---SNIQE-IVTRGGRVIFITDEEGLKRQDFPSIET  561 (608)
Q Consensus       492 haeg~~agE~kHGP~ali~~------~~~vi~i~~~~~~~~k~~---s~~~E-i~arg~~vi~I~~~~~~~~~~~~~~~~  561 (608)
                      ||+++..+|++||++...+.      ...++++-.+++ .+++.   ...+| +..++..+..|..              
T Consensus       218 ~A~~~~~pE~nHneI~~~e~~~~~~~~~~~v~l~d~~d-~~r~~~R~~~~~ei~~~~~~~v~~i~~--------------  282 (328)
T PRK08674        218 PAFYNILPELNHNEIEGYERPQSLLRFVFVVILSDPLD-HPRVKERVEITKEILGASVIPVVEIDP--------------  282 (328)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEEC--------------
T ss_conf             62325663125650002236655677538999558553-788999999999998436985699958--------------


Q ss_pred             EECCCCCHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCC
Q ss_conf             9868878156658999999-999999999838779889
Q gi|254780943|r  562 IVLPSMGEIVSPIVFSLPI-QMIAYCTAVLIGTDVDQP  598 (608)
Q Consensus       562 i~iP~~~~~l~pl~~~ipl-QllAy~~A~~~G~dpD~P  598 (608)
                          +-+..+..+++.|.+ ++.+||+|+.+|+||..=
T Consensus       283 ----~g~s~L~rl~~li~l~D~~S~yLA~~~gvDP~~v  316 (328)
T PRK08674        283 ----RGNSPLARLLSLILLGDFASVYLAELRGVDPEPV  316 (328)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             ----9988899999999999999999999849897657


No 30 
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=100.00  E-value=2e-37  Score=279.35  Aligned_cols=134  Identities=24%  Similarity=0.368  Sum_probs=114.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHH--HHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHH-HHHHHHHHHHCC--C
Q ss_conf             455213664499999999999974--22114423243144637880798718999448014688-999999998279--8
Q gi|254780943|r  466 LLYVGRGSSYPLALEGALKIKEIS--YLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQK-TLSNIQEIVTRG--G  540 (608)
Q Consensus       466 ~~~lG~G~~y~~A~EgALKlkE~s--yihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k-~~s~~~Ei~arg--~  540 (608)
                      ++|||||.+||+|+||||||||+|  |+|||||+++||||||+||||+++|||+++++|+...+ ..+.++|+++|+  +
T Consensus         1 vv~LGrG~~y~iA~EgALKlKEis~~yihae~ys~~e~KHGPiALid~~tpvi~~~~~d~~~~~~~~~li~ei~~~~~~~   80 (151)
T cd05010           1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA   80 (151)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98980688638899999999998876777512461124657563216997189995388188887657999998226897


Q ss_pred             EEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             08999565321000134662798688781566589999999999999998387798897
Q gi|254780943|r  541 RVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR  599 (608)
Q Consensus       541 ~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR  599 (608)
                      ++++|++.++....+..+......|..++.+.|++++||+||||||+|+.||+|||+|=
T Consensus        81 ~ii~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~iplQLlAy~~Av~rG~dpD~P~  139 (151)
T cd05010          81 RVIAISPESDAGIEDNSHYYLPGSRDLDDVYLAFPYILYAQLFALFNSIALGLTPDNPC  139 (151)
T ss_pred             EEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             89999458863323567679647998753888899999999999999998699999999


No 31 
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=100.00  E-value=1.6e-33  Score=252.20  Aligned_cols=126  Identities=49%  Similarity=0.762  Sum_probs=122.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             10352036543079999999986256673143042010012334455505775267881899999999863024424651
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV  371 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt  371 (608)
                      ||+|+|||||||+|+.++|+|++++++++.++.|+||.|+.+..++++++|+|||||||.|++++++.+|++|+++++||
T Consensus         1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvI~iS~SG~t~e~i~a~~~a~~~g~~~i~iT   80 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT   80 (126)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             99999961799999999999999729988998606755447889998599998689798007889999998299489870


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1787631000241013674200110007888999999999999977
Q gi|254780943|r  372 NVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAG  417 (608)
Q Consensus       372 N~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~  417 (608)
                      |+++|+|++.+|..+++++|||.++++||+||+|++.|+++|++++
T Consensus        81 ~~~~S~la~~ad~~i~~~~g~E~~~~~Tks~t~~~~~l~lla~~~~  126 (126)
T cd05008          81 NVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALALA  126 (126)
T ss_pred             CCCCCHHHHHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf             6999978996898798698776787086999999999999999869


No 32 
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426   These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=100.00  E-value=1.9e-32  Score=244.73  Aligned_cols=193  Identities=26%  Similarity=0.390  Sum_probs=155.0

Q ss_pred             CEEEEEECCC--------HHHHHHHHHHHHHH-CCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             6699997250--------12799999999763-15874348999958929999458658998875210347865446510
Q gi|254780943|r    2 CGIVGIVGRE--------SVGERLFKALKRLE-YRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHT   72 (608)
Q Consensus         2 CGI~G~~~~~--------~~~~~l~~~L~~Le-~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHt   72 (608)
                      |||+|++...        +..+.+..+...|. |||||+.|++.  + ++.+.-+.|  ++|+..     ..++.++||.
T Consensus         1 CGI~G~~~~~~~~~~~~~~~~~~~~~M~~~i~qHRGPD~~G~w~--~-R~VI~~~~~--~~~~~~-----~~~~~~lgh~   70 (646)
T TIGR01536         1 CGIAGFVDLDDKAVSKKDDEEEAIKRMLDTIAQHRGPDSSGVWI--D-RIVIKSADF--EDLKVA-----DQENAILGHR   70 (646)
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE--C-CEEEECCCC--HHHHHC-----CCCCCEEEEE
T ss_conf             90788753666342004748999999999987447988576463--3-368833772--023203-----6788168875


Q ss_pred             CCCCCCCCCCCC--CCCEEE-----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             454388997002--675023-----8899997681506899989999789889724761567888763432001026779
Q gi|254780943|r   73 RWATHGLPNKEN--SHPHCI-----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETM  145 (608)
Q Consensus        73 R~AT~G~~~~~N--ahP~~~-----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai  145 (608)
                      |.|-   ++..+  +||+..     +..+|||||.|+||.|||++|+.+||.|+|++|||||.|+++.++ .+.++.+.+
T Consensus        71 RLai---iDl~~gG~QP~~~~~~~g~~~~i~~NGEIYN~~eLR~~L~~~G~~F~T~SDtEViL~~Y~~wf-r~~~~~~g~  146 (646)
T TIGR01536        71 RLAI---IDLSGGGAQPMANEDKTGDTYVIVFNGEIYNHEELREELEAKGYTFETRSDTEVILHAYEEWF-RNLDLEDGI  146 (646)
T ss_pred             EEEE---EECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHH-CCCCHHHHH
T ss_conf             2489---875567757752246898668999815431558999999867942616884899999999973-278863789


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECC-CCCEEEECCCCCCCCCCC--EEEECCCC
Q ss_conf             99999887512220100468723899974--9-96077608-961366137620111110--37982765
Q gi|254780943|r  146 QKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHG-EGEMFVGSDVTALTLLTD--KVTYMEDG  209 (608)
Q Consensus       146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~-~~~~~vaSd~~al~~~t~--~~~~L~dg  209 (608)
                      ..++++|+|.||||+.+... +.+|++|.  | -||+++.. .+.++||||..||..+.+  ++-...|+
T Consensus       147 e~~~~~L~GmFAFa~~D~~~-~~l~~aRDrfGiKPLYy~~~~~g~~~F~SE~Kal~~~~~~~~~~~~~~~  215 (646)
T TIGR01536       147 EECVDRLDGMFAFALWDKKK-GELFLARDRFGIKPLYYAYDEGGQLYFASEIKALLAHPREENIKPEPDG  215 (646)
T ss_pred             HHHHHHHCCCEEEEEEECCC-CEEEEEECCCCCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCH
T ss_conf             99999738978999997477-7189984788623520134428626873104454227875676545771


No 33 
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.97  E-value=5.8e-31  Score=234.34  Aligned_cols=178  Identities=25%  Similarity=0.410  Sum_probs=145.0

Q ss_pred             CCEEEEEECCCH----HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             966999972501----2799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r    1 MCGIVGIVGRES----VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT   76 (608)
Q Consensus         1 MCGI~G~~~~~~----~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT   76 (608)
                      ||||+|+++.+.    ....+..++.+|.|||+|+.|+...+                           ++++||+|.|-
T Consensus         1 MCGI~G~~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~---------------------------~~~lgh~RLsI   53 (555)
T PRK09431          1 MCSIFGILDIKTDATELRKKALEMSKLMRHRGPDWSGIYASD---------------------------KAILAHERLSI   53 (555)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC---------------------------CEEEEEEEEEE
T ss_conf             971899965888812569999999975657799998849709---------------------------98999852244


Q ss_pred             CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r   77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG  154 (608)
Q Consensus        77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G  154 (608)
                      .+.-  ..+||+.+  +++++|+||.|+||.|||++|.. +|.|.|++|||||.++...   .|.       ..+++|+|
T Consensus        54 iDl~--~g~QP~~~~~~~~~lv~NGEIYN~~eLr~~L~~-~~~f~t~SDtEVil~ly~~---~G~-------~~l~~L~G  120 (555)
T PRK09431         54 VDVN--GGAQPLYNEDKTHILAVNGEIYNHQELRAELGD-KYAFQTGSDCEVILALYQE---KGP-------DFLDDLDG  120 (555)
T ss_pred             CCCC--CCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHC-CCCCCCCCHHHHHHHHHHH---HHH-------HHHHHCCC
T ss_conf             3688--899995839999899998886259999999854-8973589989999999999---769-------99987378


Q ss_pred             HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCC-CCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCC
Q ss_conf             12220100468723899974--9-960776089-61366137620111110379827651889730574
Q gi|254780943|r  155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGE-GEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGL  219 (608)
Q Consensus       155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~-~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~  219 (608)
                      .||||+.+... +++++||.  | -||+++..+ +.+++|||..||..+++++..+++|.+.......+
T Consensus       121 mFAFai~D~~~-~~l~laRDr~GiKPLYy~~~~~g~l~FaSEiKaL~~~~~~I~~~pPG~~l~~~~g~~  188 (555)
T PRK09431        121 MFAFALYDGEK-DAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEF  188 (555)
T ss_pred             EEEEEEEECCC-CEEEEEECCCCCCCEEEEEECCCCEEEEECHHHHHHHCCCEEECCCCEEEECCCCCE
T ss_conf             46899982777-779999615787425999817983899730335677617718858950898589978


No 34 
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.97  E-value=7.4e-31  Score=233.61  Aligned_cols=178  Identities=29%  Similarity=0.410  Sum_probs=143.8

Q ss_pred             CCEEEEEECCC---HH-HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             96699997250---12-799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r    1 MCGIVGIVGRE---SV-GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT   76 (608)
Q Consensus         1 MCGI~G~~~~~---~~-~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT   76 (608)
                      ||||+|+++..   +. .+.+-.++..|.|||+|+.|+...                           +++++||+|.++
T Consensus         1 MCGI~G~~~~~~~~~~~~~~l~~m~~~~~hRGPD~~g~~~~---------------------------~~v~lgh~RLsI   53 (628)
T TIGR03108         1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVE---------------------------PGIGLGHRRLSI   53 (628)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEC---------------------------CCEEEEECCEEE
T ss_conf             98279998578888537999999997466879998884865---------------------------998998233001


Q ss_pred             CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r   77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG  154 (608)
Q Consensus        77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G  154 (608)
                      -.- + ..+||+.+  +++++|.||.|+||.|||++|...||.|.|+||||||.++...   +|.       ..+++++|
T Consensus        54 iDl-~-~g~QP~~~~~~~~~ivfNGEIYN~~eLr~~L~~~g~~f~t~sDtEVll~~y~~---~G~-------~~~~~l~G  121 (628)
T TIGR03108        54 IDL-S-GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEE---WGE-------ACVERFRG  121 (628)
T ss_pred             ECC-C-CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HHH-------HHHHHHCE
T ss_conf             079-8-89999775999989999614028999999998569961789819999999999---859-------99988457


Q ss_pred             HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCC-CEEEECCCCCCCCCC---------------------------CEE
Q ss_conf             12220100468723899974--9-9607760896-136613762011111---------------------------037
Q gi|254780943|r  155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEG-EMFVGSDVTALTLLT---------------------------DKV  203 (608)
Q Consensus       155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~-~~~vaSd~~al~~~t---------------------------~~~  203 (608)
                      .||||+.+... +++++||.  | -||++...++ .+++|||..||..+.                           +.+
T Consensus       122 mFAfai~D~~~-~~l~laRDr~GiKPLYY~~~~~g~~~FaSEikall~~~~~~~~id~~~l~~yl~~~~~~~~~T~f~~I  200 (628)
T TIGR03108       122 MFAFALWDRNQ-ETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGV  200 (628)
T ss_pred             EEEEEEECCCC-CEEEEECCCCCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             88999983777-78999868666753068981896299810046887378876311599999999737889986401574


Q ss_pred             EECCCCEEEEEECCC
Q ss_conf             982765188973057
Q gi|254780943|r  204 TYMEDGDWAIIRNSG  218 (608)
Q Consensus       204 ~~L~dgei~~i~~~~  218 (608)
                      ..|++|++..++.+.
T Consensus       201 ~~l~PG~~l~~~~~~  215 (628)
T TIGR03108       201 KKLEPGHTLTLRRGA  215 (628)
T ss_pred             EECCCCCEEEEECCC
T ss_conf             131897079998898


No 35 
>PTZ00077 asparagine synthetase; Provisional
Probab=99.97  E-value=2e-30  Score=230.58  Aligned_cols=183  Identities=24%  Similarity=0.319  Sum_probs=146.1

Q ss_pred             CCEEEEEECCC----HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             96699997250----12799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r    1 MCGIVGIVGRE----SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT   76 (608)
Q Consensus         1 MCGI~G~~~~~----~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT   76 (608)
                      ||||+|+++.+    ...+.++++.++|.|||+|+.|+.+..+..                      .....+||+|.|-
T Consensus         1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~G~~~~~~~~----------------------~~~~~Lgh~RLsI   58 (610)
T PTZ00077          1 MCGILAIFHSSIEKHRLRRKALELSKILRHRGPDWNGIVVEENDD----------------------GTTNVLAHERLAI   58 (610)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC----------------------CCEEEEEECCCCE
T ss_conf             974799965887657789999999863566699998968822688----------------------7535798335325


Q ss_pred             CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCC-CEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             88997002675023--8899997681506899989999789-88972476156788876343200102677999999887
Q gi|254780943|r   77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQ-QVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLT  153 (608)
Q Consensus        77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g-~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~  153 (608)
                      .+-.  .-.||+.+  +++++|+||.|+||.|||++|...| +.|.|++|||||.||...+   |.       .++++|+
T Consensus        59 iDl~--~G~QPm~~~~~~~~lv~NGEIYN~~eLR~~L~~~~~~~f~t~SDtEVIl~ly~~~---G~-------~~~~~L~  126 (610)
T PTZ00077         59 VDVL--SGHQPLYDDAEEVCLTINGEIYNHLELRKLIKEDNIKKLKSCSDCAVIPNLFKIF---GE-------KIPSMLD  126 (610)
T ss_pred             ECCC--CCCCCCCCCCCCEEEEEEEEHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH---HH-------HHHHHHC
T ss_conf             0898--8989962699999999962032789999999865987667899379999999999---79-------8998741


Q ss_pred             HHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCC-CEEEECCCCCCCCCCCEEEECCCCEEEEEECCC
Q ss_conf             512220100468723899974--9-9607760896-136613762011111037982765188973057
Q gi|254780943|r  154 GSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEG-EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSG  218 (608)
Q Consensus       154 G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~-~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~  218 (608)
                      |.||||+.+... ++++++|.  | -||++|...+ .+++|||..||...+.++..+++|.+.....+.
T Consensus       127 GmFAFai~D~~~-~~l~laRD~~GiKPLYy~~~~dg~i~FaSE~KaL~~~~~~~~~fpPGh~~~~~~~~  194 (610)
T PTZ00077        127 GIFAGVISDHKK-NTFFAFRDPIGICPLYIGYAADGSIWFASEFKALKDNCIRYVIFPPGHYYINCKNK  194 (610)
T ss_pred             CEEEEEEEECCC-CEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHHHHEEEECCCCEEEEEECCC
T ss_conf             658999997688-97999965777765068985798699952104455544307832896589973588


No 36 
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97  E-value=3.1e-30  Score=229.25  Aligned_cols=179  Identities=26%  Similarity=0.435  Sum_probs=143.8

Q ss_pred             CCEEEEEECCC---HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             96699997250---127999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r    1 MCGIVGIVGRE---SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~---~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      ||||+|+++.+   .-...+-.++.+|.|||+|+.|+..                           .+++++||+|.|--
T Consensus         1 MCGI~G~~~~~~~~~~~~~l~~m~~~l~HRGPD~~g~~~---------------------------~~~~~lgh~RLsIi   53 (589)
T TIGR03104         1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHA---------------------------QGPVALGHRRLKII   53 (589)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE---------------------------CCCEEEEEECCEEE
T ss_conf             982799996699877999999999546285978778185---------------------------39989997011142


Q ss_pred             CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      +- ++.-.||+.+  +++++|.||.|+||.|||++|..+||.|.|+||||||.++++.   +|       ...+++++|.
T Consensus        54 Dl-~~~g~QP~~~~~~~~~ivfNGEIYN~~eLr~eL~~~g~~f~t~sDtEvll~~y~~---~G-------~~~l~~l~Gm  122 (589)
T TIGR03104        54 DL-SEASQQPMVDAELGLALVFNGCIYNYRELRAELEGLGYRFFSDGDTEVILKAYHA---WG-------RDCVSRFNGM  122 (589)
T ss_pred             CC-CCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HH-------HHHHHHHCCE
T ss_conf             78-8568999666999989999847645999999998679972899809999999999---97-------9999973275


Q ss_pred             HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC---------------------C-------CEEE
Q ss_conf             2220100468723899974--9-960776089613661376201111---------------------1-------0379
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL---------------------T-------DKVT  204 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~---------------------t-------~~~~  204 (608)
                      ||||+.+... +++++||.  | -||++...++.+++|||..||...                     .       +.+.
T Consensus       123 FAfai~D~~~-~~l~laRDr~GiKPLYY~~~~~~~~FaSEikall~~~~~~~~~~~~~l~~yl~~~~~~~~~~T~f~~I~  201 (589)
T TIGR03104       123 FAFAIWERDS-GRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVR  201 (589)
T ss_pred             EEEEEECCCC-CEEEEEECCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf             8999980788-889998557778405999609879993353899847676541136789998522566589854035869


Q ss_pred             ECCCCEEEEEECCC
Q ss_conf             82765188973057
Q gi|254780943|r  205 YMEDGDWAIIRNSG  218 (608)
Q Consensus       205 ~L~dgei~~i~~~~  218 (608)
                      .|++|++..++.++
T Consensus       202 ~l~pG~~l~~~~~~  215 (589)
T TIGR03104       202 KLPPATWMTVEPDG  215 (589)
T ss_pred             EECCCEEEEEECCC
T ss_conf             95894499996799


No 37 
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.97  E-value=2.3e-30  Score=230.25  Aligned_cols=180  Identities=28%  Similarity=0.460  Sum_probs=149.2

Q ss_pred             CEEEEEECCCH---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             66999972501---279999999976315874348999958929999458658998875210347865446510454388
Q gi|254780943|r    2 CGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHG   78 (608)
Q Consensus         2 CGI~G~~~~~~---~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G   78 (608)
                      |||+|+++.+.   ..+.+..+|.+|+|||+|+.|+...                           +++++||+|+|+.+
T Consensus         1 CGI~Gi~~~~~~~~~~~~~~~~l~~l~hRGPD~~~~~~~---------------------------~~~~lgh~RLsi~d   53 (220)
T cd00712           1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWID---------------------------EGVALGHRRLSIID   53 (220)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE---------------------------CCEEEEEEECCCCC
T ss_conf             969999878997205999999998534669984788985---------------------------99899998743258


Q ss_pred             CCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             997002675023--889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   79 LPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        79 ~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      . + ..+||+.+  +++++|+||.|+||.|||++|..+|+.|.|++|||||++++..+   |.       +.+++++|+|
T Consensus        54 ~-~-~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l~~~~~~~~~~sDtEvil~~y~~~---G~-------~~~~~l~G~f  121 (220)
T cd00712          54 L-S-GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEW---GE-------DCLERLNGMF  121 (220)
T ss_pred             C-C-CCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC---CC-------EEEEECCCCE
T ss_conf             8-6-689896158999999997999622999999986498466788699999998742---86-------1001246857


Q ss_pred             HHHHHCCCCCCEEEEEECC---CCEEEECCCCCEEEECCCCCCCCCCC---------------------------EEEEC
Q ss_conf             2201004687238999749---96077608961366137620111110---------------------------37982
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARKG---PPLIIGHGEGEMFVGSDVTALTLLTD---------------------------KVTYM  206 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~g---sPL~iG~~~~~~~vaSd~~al~~~t~---------------------------~~~~L  206 (608)
                      |+++.+.. .++++++|.-   -||++.+.++.+++|||..+|..+..                           .+..|
T Consensus       122 a~~i~D~~-~~~l~l~RD~~G~KPLYY~~~~~~~~FsSeik~l~~~~~~~~~~n~~~l~~~l~~~~~~~~~T~~k~I~~l  200 (220)
T cd00712         122 AFALWDKR-KRRLFLARDRFGIKPLYYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKL  200 (220)
T ss_pred             EEEEEECC-CCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCEEEE
T ss_conf             99999878-98199987788860559995099899994679998676988547899999999659989799620090899


Q ss_pred             CCCEEEEEECCCCEE
Q ss_conf             765188973057410
Q gi|254780943|r  207 EDGDWAIIRNSGLTI  221 (608)
Q Consensus       207 ~dgei~~i~~~~~~i  221 (608)
                      ++|++..++++++++
T Consensus       201 ~PG~~l~~~~~~~~~  215 (220)
T cd00712         201 PPGHYLTVDPGGVEI  215 (220)
T ss_pred             CCCEEEEEECCCEEE
T ss_conf             996089998993389


No 38 
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.97  E-value=3.6e-31  Score=235.78  Aligned_cols=119  Identities=23%  Similarity=0.374  Sum_probs=112.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             103520365430799999999862566731430420100123-3445550577526788189999999986302442465
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      +|+|+||||||||++.++|+||+++++|++++.|+||.|+.+ .+++++++|++||||||+||++|++.+|++|+++++|
T Consensus         1 nI~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T~e~i~a~~~ak~~g~~tiai   80 (120)
T cd05710           1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL   80 (120)
T ss_pred             CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             99999961999999999999986678179998510124369876799969999837989789999999999869959999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             117876310002410136742001100078889999999999
Q gi|254780943|r  371 VNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM  412 (608)
Q Consensus       371 tN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll  412 (608)
                      ||+++|+|++.+|+++++  |+|++|++||+|++++++|++|
T Consensus        81 T~~~~S~la~~aD~~i~~--g~e~~~~~tk~~~~~~~al~ll  120 (120)
T cd05710          81 TDDEDSPLAKLADYVIVY--GFEIDAVEEKYLLLYMLALRLL  120 (120)
T ss_pred             ECCCCCHHHHHCCEEEEC--CCCCCCHHHHHHHHHHHHHHHC
T ss_conf             898989879967988888--9963202089999999999869


No 39 
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.97  E-value=1.1e-28  Score=218.59  Aligned_cols=179  Identities=28%  Similarity=0.399  Sum_probs=155.1

Q ss_pred             CCEEEEEECCCHH---HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             9669999725012---7999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r    1 MCGIVGIVGRESV---GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~~~---~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      ||||+|+++..+.   .+.+..+...|.|||+|++|++.                           ..++++||.|.+.-
T Consensus         1 MCGI~g~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~---------------------------~~~~~~gh~rL~i~   53 (542)
T COG0367           1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWI---------------------------SLNALLGHRRLSIV   53 (542)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE---------------------------CCCCEEEEEEEEEE
T ss_conf             985566512544330058999999987356998346573---------------------------37713777788853


Q ss_pred             CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      |...  -.||+..  +++++|+||.|+||.|||++|..+||.|.|++|||||.++++..   +.+       +++++.|.
T Consensus        54 d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~---g~~-------~~~~l~G~  121 (542)
T COG0367          54 DLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEW---GED-------CVEHLNGM  121 (542)
T ss_pred             CCCC--CCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HHH-------HHHHHCCE
T ss_conf             1455--78887578975899988985127999999975685003566339999999986---577-------88774560


Q ss_pred             HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-----CCEEEECCCCEEEEEECCCC
Q ss_conf             2220100468723899974--9-960776089613661376201111-----10379827651889730574
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-----TDKVTYMEDGDWAIIRNSGL  219 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-----t~~~~~L~dgei~~i~~~~~  219 (608)
                      |||++.+.+. +++|++|+  | .||+++..++..+||||..|+..+     .+.+..|++|.+..++.++.
T Consensus       122 fAfai~d~~~-~~l~laRD~~GikPLyy~~~~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~  192 (542)
T COG0367         122 FAFAIYDETR-QKLFLARDPFGVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGL  192 (542)
T ss_pred             EEEEEEECCC-CEEEEEECCCCCCCCEEEECCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCEEEECCCCC
T ss_conf             6999998899-8899984588853217995288258874426675077543357707837997688648984


No 40 
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=99.94  E-value=2.8e-26  Score=201.81  Aligned_cols=128  Identities=38%  Similarity=0.475  Sum_probs=120.3

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             356551035203654307999999998625667314304201001-2334455505775267881899999999863024
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQGL  365 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~  365 (608)
                      +.+.+||+|+|||+||++|+.++++|+++...++.+..++||.+. ...++++++||++||||+|.|++++++.+|++|+
T Consensus         2 l~~a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~   81 (131)
T pfam01380         2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRDLLEAAKLLKARGA   81 (131)
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             76789899999326999999999999986898778636588660675679999999995489865768987899998499


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             4246511787631000241013674200110007888999999999999
Q gi|254780943|r  366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAI  414 (608)
Q Consensus       366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal  414 (608)
                      ++++|||.++|+|++.+|.++++.+|+|.++++||+|++|++++.++++
T Consensus        82 ~~i~iT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~~~~l~~l~~l~~  130 (131)
T pfam01380        82 KIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQLALLDALAI  130 (131)
T ss_pred             EEEEEECCCCCHHHHHCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf             6999989999978996899898799875654568999999999999986


No 41 
>cd03766 Gn_AT_II_novel Gn_AT_II_novel.  This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined.  The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate.  Asparagine synthet
Probab=99.89  E-value=1.1e-22  Score=176.75  Aligned_cols=169  Identities=18%  Similarity=0.217  Sum_probs=120.5

Q ss_pred             CCEEEEEECCCHH----HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             9669999725012----799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r    1 MCGIVGIVGRESV----GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT   76 (608)
Q Consensus         1 MCGI~G~~~~~~~----~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT   76 (608)
                      ||||+|+++.+..    ...+-.++..|+|||||+.|+...+..                       ...+.++|+|.+.
T Consensus         1 MCGI~g~~~~~~~~~~~~~~~~~~~~~l~hRGPD~~g~~~~~~~-----------------------~~~~~~~~~~L~i   57 (181)
T cd03766           1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVT-----------------------NWTLLFTSSVLSL   57 (181)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCC-----------------------CCEEEEEEEEEEC
T ss_conf             97589999178875124999999985574779973588974146-----------------------8605677788851


Q ss_pred             CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r   77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG  154 (608)
Q Consensus        77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G  154 (608)
                      .|..  .-.||+.+  ++..+++||.|+||.+||.          +++||||+.+++.....+    ...+..++++|+|
T Consensus        58 ~~~~--~~~QP~~~~~~~~~l~fNGEIYN~~~l~~----------~~sDtevl~~~~~~~~~~----~~~i~~~l~~l~G  121 (181)
T cd03766          58 RGDH--VTRQPLVDQSTGNVLQWNGELYNIDGVED----------EENDTEVIFELLANCSSE----SQDILDVLSSIEG  121 (181)
T ss_pred             CCCC--CCCCCCCCCCCCEEEEEEEEEECCCCCCC----------CCCHHHHHHHHHHHHHHH----HCCHHHHHHHCCC
T ss_conf             4887--78989792999999999478853664556----------798499999999985330----1018899985162


Q ss_pred             HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC-EEEECCCCCCCCCCCEEEECCCCE
Q ss_conf             12220100468723899974--9-96077608961-366137620111110379827651
Q gi|254780943|r  155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE-MFVGSDVTALTLLTDKVTYMEDGD  210 (608)
Q Consensus       155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~-~~vaSd~~al~~~t~~~~~L~dge  210 (608)
                      .|||++++... +++|++|.  | -||++++.++. .|++|+..++... ..+..++.+-
T Consensus       122 mFAfvi~D~~~-~~l~l~RD~~G~KPLyy~~~~~~~~f~~ssv~~~~~~-~~~~e~~~~~  179 (181)
T cd03766         122 PFAFIYYDASE-NKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSSG-SGFQEVLAGG  179 (181)
T ss_pred             EEEEEEEECCC-CEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCC-CCEEECCCCC
T ss_conf             28999998889-9999998888875648999699989999972377788-9748878986


No 42 
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase),  asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS).  The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.88  E-value=2.7e-21  Score=167.13  Aligned_cols=213  Identities=21%  Similarity=0.288  Sum_probs=148.3

Q ss_pred             CCEEEEEECCCH-HHHHHHHHHHHH--------HCCC---CCEEEEEEEE--CCEEEEEECCCCH-HHHHHHHCCCCCCC
Q ss_conf             966999972501-279999999976--------3158---7434899995--8929999458658-99887521034786
Q gi|254780943|r    1 MCGIVGIVGRES-VGERLFKALKRL--------EYRG---YDSSGMATIC--DGKIQCVRAQGKL-SELEKELNKKPLKG   65 (608)
Q Consensus         1 MCGI~G~~~~~~-~~~~l~~~L~~L--------e~RG---~Ds~Gia~~~--~~~i~~~K~~g~i-~~l~~~~~~~~~~~   65 (608)
                      ||=++||.+..- ..+.++..-..|        +++|   .|.+||+.++  +....++|+.-.+ ++........++.+
T Consensus         1 MCRll~y~g~~~~l~~~l~~~~~sl~~qs~~~~~~~~~~n~DGwGi~wy~~~~~~p~~~r~~~pa~sd~~~~~l~~~i~s   80 (257)
T cd01908           1 MCRLLGYSGAPIPLEPLLIRPSHSLLVQSGGPREMKGTVHADGWGIGWYEGKGGRPFRYRSPLPAWSDINLESLARPIKS   80 (257)
T ss_pred             CCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf             97025013777547642655773177751684214799889974698883799548886898766588567876532477


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHHCCH----
Q ss_conf             544651045438899700267502388999976815068999899997898-897247615678887634320010----
Q gi|254780943|r   66 NIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQ-VFLTETDTEVIACLLEKFIKNGSS----  140 (608)
Q Consensus        66 ~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~-~f~s~tDsEvi~~li~~~~~~~~~----  140 (608)
                      ...|+|+|+||.|.++..|+|||..++++.+|||.|.++.++|..+..... ....+||||.++.++-..+.+...    
T Consensus        81 ~~~laHvR~AT~G~v~~~N~HPF~~~~~~F~HNG~i~~~~~~~~~~~~~~~~~~~G~TDSE~~F~~ll~~l~~~~~~~~~  160 (257)
T cd01908          81 PLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPA  160 (257)
T ss_pred             CEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             54999986177897763567872665799996773478788889886335433467886999999999999861887668


Q ss_pred             -HHHHHHHHHHHHHHH---HHHHHHCCCCCCEEEEEECCC--CEEEEC------------------CCCCEEEECCCCCC
Q ss_conf             -267799999988751---222010046872389997499--607760------------------89613661376201
Q gi|254780943|r  141 -KKETMQKLMQCLTGS---YSIAVIFEDDPHSIIVARKGP--PLIIGH------------------GEGEMFVGSDVTAL  196 (608)
Q Consensus       141 -~~~ai~~~~~~l~G~---ya~~il~~~~p~~i~~ar~gs--PL~iG~------------------~~~~~~vaSd~~al  196 (608)
                       +.+++.+++..+...   .++-++..+ .+.+++.|..+  .|+.-.                  .++.++||||+.--
T Consensus       161 ~~~~~l~~~~~~l~~~~~~~~lN~~~sd-G~~l~a~r~~~~~sLy~~~~~~~~~~~~~~~~~~~~~~~~~vvVASePL~~  239 (257)
T cd01908         161 ELLDAILQTLRELAALAPPGRLNLLLSD-GEYLIATRYASAPSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTD  239 (257)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             8999999999999842878269999987-998999997799954788655876544411011336889999999389999


Q ss_pred             CCCCCEEEECCCCEEEEEECC
Q ss_conf             111103798276518897305
Q gi|254780943|r  197 TLLTDKVTYMEDGDWAIIRNS  217 (608)
Q Consensus       197 ~~~t~~~~~L~dgei~~i~~~  217 (608)
                      ..   .-..+++|++++++.+
T Consensus       240 ~~---~W~~v~~~~llvv~~g  257 (257)
T cd01908         240 DE---GWTEVPPGELVVVSEG  257 (257)
T ss_pred             CC---CCEECCCCEEEEEECC
T ss_conf             97---9579089839999488


No 43 
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.86  E-value=3.2e-20  Score=159.70  Aligned_cols=170  Identities=22%  Similarity=0.288  Sum_probs=129.0

Q ss_pred             EEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEE
Q ss_conf             9945865899887---5210347865446510454388997002675023889999768150689998999978988972
Q gi|254780943|r   44 CVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT  120 (608)
Q Consensus        44 ~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s  120 (608)
                      |+|+.|...++.+   .+....++|.++|+|+|++|+-.|++.-|||+...    ||||.|.+|.-.|+.+..+|+.|.|
T Consensus       178 VYKG~~~p~~V~~~y~dl~~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr~l----vHNGEInT~~gN~nwm~ar~~~~~s  253 (371)
T COG0067         178 VYKGVGLPEDVAEFYLDLDDERYKSAIALVHTRFSTNTFPSWPLAHPFRLL----VHNGEINTYGGNRNWLEARGYKFES  253 (371)
T ss_pred             EEECCCCHHHHHHHHHHCCCHHHCEEEEEEEECCCCCCCCCCCCCCCCEEE----EECCEECCCCCHHHHHHHHHCCCCC
T ss_conf             993056899997777652442212468999800678889988767866533----3355021541179999985240104


Q ss_pred             CCCHHHHHHHHHHHHHHCC---HHHHHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEECCC---CEEEECCCC
Q ss_conf             4761567888763432001---026779999---------9988751222010046872389997499---607760896
Q gi|254780943|r  121 ETDTEVIACLLEKFIKNGS---SKKETMQKL---------MQCLTGSYSIAVIFEDDPHSIIVARKGP---PLIIGHGEG  185 (608)
Q Consensus       121 ~tDsEvi~~li~~~~~~~~---~~~~ai~~~---------~~~l~G~ya~~il~~~~p~~i~~ar~gs---PL~iG~~~~  185 (608)
                      .+|||++++|+......+.   ++..++...         ...+.|.+|...-..-.|+.....+.-|   |...|-.+.
T Consensus       254 ~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~~~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~  333 (371)
T COG0067         254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADI  333 (371)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEECCCCCCCCEEEEEEHHHHCCCCCCCCCCE
T ss_conf             65288899987876024774111467898877518571457771696540337779844079886064477875077621


Q ss_pred             CEEEECCCCCCCCCC----CEEEECCCCEEEEEECC
Q ss_conf             136613762011111----03798276518897305
Q gi|254780943|r  186 EMFVGSDVTALTLLT----DKVTYMEDGDWAIIRNS  217 (608)
Q Consensus       186 ~~~vaSd~~al~~~t----~~~~~L~dgei~~i~~~  217 (608)
                      .++.+|+..|+++..    .+|+.-+||+++.-+.-
T Consensus       334 ~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~  369 (371)
T COG0067         334 VFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEA  369 (371)
T ss_pred             EEEECCEEEEEECCCCCCCCEEEEECCCEEEEEEEC
T ss_conf             687420554540237987542899549989998722


No 44 
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.85  E-value=1e-19  Score=156.08  Aligned_cols=216  Identities=17%  Similarity=0.197  Sum_probs=153.8

Q ss_pred             CCEEEEEECCCHH-HHHHHH---HHHH-----HHCC----CCCEEEEEEEECC---EEEEEECCCCHH---HHHHHHCCC
Q ss_conf             9669999725012-799999---9997-----6315----8743489999589---299994586589---988752103
Q gi|254780943|r    1 MCGIVGIVGRESV-GERLFK---ALKR-----LEYR----GYDSSGMATICDG---KIQCVRAQGKLS---ELEKELNKK   61 (608)
Q Consensus         1 MCGI~G~~~~~~~-~~~l~~---~L~~-----Le~R----G~Ds~Gia~~~~~---~i~~~K~~g~i~---~l~~~~~~~   61 (608)
                      ||=.+||.|..-. .+.|++   .|..     .+-|    --|.+|++.++++   .-.++|+...+=   ++.+.  ..
T Consensus         1 MCR~l~y~G~p~~l~~ll~~p~hSL~~QS~~~~~~~~~~~N~DGfGvgWy~~~~~~~P~~yr~~~PaW~D~nl~~l--a~   78 (251)
T TIGR03442         1 MCRHLAYLGAPVSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASL--AR   78 (251)
T ss_pred             CCCCCEECCCCEEHHHHHCCCCCHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHH--HH
T ss_conf             9601165169668888552886138886627555458855688617988768888887045068635468119999--86


Q ss_pred             CCCCCEEEEEECCCCCC-CCCCCCCCCEEECCEEEEECCEECCHHH-HHHHHHHC----CC-EEEECCCHHHHHHHHHHH
Q ss_conf             47865446510454388-9970026750238899997681506899-98999978----98-897247615678887634
Q gi|254780943|r   62 PLKGNIGIAHTRWATHG-LPNKENSHPHCIEGIAVTHNGIIENFSR-LKKEHFSS----QQ-VFLTETDTEVIACLLEKF  134 (608)
Q Consensus        62 ~~~~~~gIgHtR~AT~G-~~~~~NahP~~~~~~~vvHNG~I~N~~e-lr~~l~~~----g~-~f~s~tDsEvi~~li~~~  134 (608)
                      ...+.+.++|+|+||.| .++..|+|||..+++...|||.|.|+.+ +|+.|...    .+ ....+||||.+..|+-..
T Consensus        79 ~v~S~~~lAHVR~AT~G~~v~~~NcHPF~~g~~lF~HNG~I~~f~~~l~r~l~~~l~~~~~~~i~G~TDSE~~Fal~l~~  158 (251)
T TIGR03442        79 YVESGCVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNR  158 (251)
T ss_pred             HHCCCEEEEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             41366589886505688765523478833577899947723774588899998537987874414887589999999998


Q ss_pred             HHHCC--HHHHHHHHHHHHHHHH-----HHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECC
Q ss_conf             32001--0267799999988751-----2220100468723899974996077608961366137620111110379827
Q gi|254780943|r  135 IKNGS--SKKETMQKLMQCLTGS-----YSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYME  207 (608)
Q Consensus       135 ~~~~~--~~~~ai~~~~~~l~G~-----ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~  207 (608)
                      +.+..  .+.+++..++..++-.     ..+-++..+ .+.+++.|.++.|++-..+++++||||+.-  + -..-..++
T Consensus       159 l~~~~~~al~~ai~~~~~~~~~~~~~~~~~lN~~ltD-G~~l~AtR~~~sLy~~~~~~~vvVASEPld--~-~~~W~~vP  234 (251)
T TIGR03442       159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD-GSRLVATRWADTLYWLKDPEGVIVASEPYD--D-DPGWQDVP  234 (251)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEECCCEEEEECCCEEEEEECCCC--C-CCCCEECC
T ss_conf             8764863799999999999998642867068999964-999999994586389936997999978889--9-97964989


Q ss_pred             CCEEEEEECCCCEEC
Q ss_conf             651889730574100
Q gi|254780943|r  208 DGDWAIIRNSGLTIY  222 (608)
Q Consensus       208 dgei~~i~~~~~~i~  222 (608)
                      ++.++.++.+++.+.
T Consensus       235 ~~s~l~v~~~~v~~~  249 (251)
T TIGR03442       235 DRHLLSVSEDDVTIT  249 (251)
T ss_pred             CCCEEEEECCCEEEE
T ss_conf             996899978927997


No 45 
>KOG0571 consensus
Probab=99.83  E-value=2.5e-20  Score=160.46  Aligned_cols=180  Identities=27%  Similarity=0.400  Sum_probs=144.4

Q ss_pred             CCEEEEEECCCH---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             966999972501---27999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r    1 MCGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~~---~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      ||||+++.+..+   ..+..++.-+++.|||+|.+|.+...++                           -+||-|.|-.
T Consensus         1 MCGI~Av~~~~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~---------------------------~l~heRLAIv   53 (543)
T KOG0571           1 MCGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRNDN---------------------------ILGHERLAIV   53 (543)
T ss_pred             CCCEEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCHHHEECCC---------------------------CCCCCCEEEE
T ss_conf             9841213156404335744556777635899796522200455---------------------------4343210576


Q ss_pred             CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r   78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      +.  .--+||...  +.+.+.+||.|+|+++||+.+.  .+.|++.+|.|||.||.++.    +     ...+...|+|.
T Consensus        54 dp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~--~~~~~T~sDcEvIi~lY~kh----g-----~~~~~~~LDG~  120 (543)
T KOG0571          54 DP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCK--DFEFQTGSDCEVIIHLYEKH----G-----GEQAICMLDGV  120 (543)
T ss_pred             CC--CCCCCCCCCCCCCEEEEECCEECCHHHHHHHHH--HCCCCCCCCCEEEEEHHHHC----C-----CHHHHHHHHHH
T ss_conf             68--867764213787679987764454899998765--14423478841661157644----7-----24667775401


Q ss_pred             HHHHHHCCCCCCEEEEEECC---CCEEEECCCC-CEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEE
Q ss_conf             22201004687238999749---9607760896-136613762011111037982765188973057410
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVARKG---PPLIIGHGEG-EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTI  221 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar~g---sPL~iG~~~~-~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i  221 (608)
                      |||++.+..+ ++++++|.+   .||++|.+.+ ..++|||...+.+.++++.+-.+|.+...+-++..-
T Consensus       121 Fafvl~d~~~-~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r  189 (543)
T KOG0571         121 FAFVLLDTKD-DKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTR  189 (543)
T ss_pred             EEEEEECCCC-CEEEECCCCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHEECCCCCEEECCCCCCCC
T ss_conf             3788952788-74783368767413478861788578741020233331000455884141234466467


No 46 
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.78  E-value=2e-18  Score=147.22  Aligned_cols=122  Identities=21%  Similarity=0.158  Sum_probs=101.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             1035203654307999999998625667314304201001-233445550577526788189999999986302442465
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      ||+|.|+|+|...|....+-|.+ .|+++....+++..+. -..+.+++++|++||||||.|++++++.+|++|+++++|
T Consensus         2 RI~~~GvG~S~~va~~~~~kl~r-~G~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e~~~~~~~ak~~g~~vI~i   80 (128)
T cd05014           2 KVVVTGVGKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI   80 (128)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHH-CCCCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             49999426799999999999995-79945754731555411347789999999979999867999999998637858999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             11787631000241013674200---110007888999999999999
Q gi|254780943|r  371 VNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAI  414 (608)
Q Consensus       371 tN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal  414 (608)
                      ||+++|+|++.||+++.+.+++|   .++++|.+.++|+.++=.|++
T Consensus        81 T~~~~S~La~~ad~~l~~~~~eE~~~~~~~at~Sr~aqL~i~D~L~i  127 (128)
T cd05014          81 TGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALAV  127 (128)
T ss_pred             ECCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             87999967996898997799865777787478999999999999985


No 47 
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type.  Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis.  CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while  betaLS forms a heterodimer.   The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.66  E-value=2.6e-15  Score=125.52  Aligned_cols=120  Identities=13%  Similarity=0.113  Sum_probs=95.8

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             54465104543889970026750238899997681506899989999789889724761567888763432001026779
Q gi|254780943|r   66 NIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETM  145 (608)
Q Consensus        66 ~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai  145 (608)
                      .+++.|.|-+ -...+..-.||+.+++.++|.||.|+||.|||++|...|++|.|.+||||+.++++.   +|.      
T Consensus        26 ~~aL~h~rLs-Iidl~~~~~qp~~~~~~tlv~nGEIYNy~eLR~eL~~~g~~f~t~sDtEVlL~~~~~---wG~------   95 (199)
T cd01909          26 GEALPNGAGT-IVHAGSVDVQVARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LGL------   95 (199)
T ss_pred             CEEECCCCEE-EEECCCCCCCCEECCCEEEEEEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHH---HHH------
T ss_conf             5060235189-986687566861637689999577417999999998669575458726999999999---829------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC
Q ss_conf             99999887512220100468723899974--9-960776089613661376201111
Q gi|254780943|r  146 QKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL  199 (608)
Q Consensus       146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~  199 (608)
                       ..+++++|+|||++.++  .++++++|.  | .||++-.+ +..++|||..++...
T Consensus        96 -~~l~rl~GmFAFai~D~--~~~L~LaRDr~G~KPLY~~~~-g~~~~asElK~l~a~  148 (199)
T cd01909          96 -HAFRLAEGDFCFFIEDG--NGRLTLATDHAGSVPVYLVQA-GEVWATTELKLLAAH  148 (199)
T ss_pred             -HHHHHHCCCEEEEEECC--CCCEEEEECCCCCCCEEEEEC-CCEEEECCCHHHHCC
T ss_conf             -99987266789999859--996999976899843589848-979986000123207


No 48 
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.64  E-value=1.4e-14  Score=120.36  Aligned_cols=153  Identities=13%  Similarity=0.052  Sum_probs=100.7

Q ss_pred             HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHC
Q ss_conf             99997417899999871574766452111100002356551035203654307999999998625667314304-20100
Q gi|254780943|r  252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVS-SEFRY  330 (608)
Q Consensus       252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~a-sEf~y  330 (608)
                      ..|-+.+.-+.++++++..    +...+.... ..+.+.++|++.|.|.|+..|....+-|.+ .|+++..... .....
T Consensus        99 ~~~~~~~~~~~l~~t~~~~----~~~~l~~av-~~i~~A~~I~i~G~G~S~~vA~~~~~kl~r-ig~~~~~~~d~~~~~~  172 (282)
T PRK11557         99 GEKLIKENTAAMYATLDVN----SEEKLHECV-TMLRSARRIILTGIGASGLVAQNFAWKLMK-IGINAVAERDMHALLA  172 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HCCCEEECCCHHHHHH
T ss_conf             9999999999999998336----899999999-999648958999704369999999999998-0996374088689999


Q ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             12334455505775267881899999999863024424651178763100024101367420011000788899999999
Q gi|254780943|r  331 RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLV  410 (608)
Q Consensus       331 ~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~  410 (608)
                      .-..+++++++|+||.||+|.+++++++.||++|+++++||+.++|||++.||+++++.. +|.-. -.-++++.+..|+
T Consensus       173 ~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD~~L~~~~-~e~~~-~~~~~~s~~a~l~  250 (282)
T PRK11557        173 TVQALSPDDLLLAISYSGERRELNLAADEALRVGGKVLAITGFTPNALQQRASHCLYTIA-EEQAT-RSAAISSTHAQGM  250 (282)
T ss_pred             HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEECC-CCCCC-CCCCHHHHHHHHH
T ss_conf             998189999899985999978999999999987993999729899815886999998478-53101-3434399999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780943|r  411 IM  412 (608)
Q Consensus       411 ll  412 (608)
                      ++
T Consensus       251 ii  252 (282)
T PRK11557        251 LT  252 (282)
T ss_pred             HH
T ss_conf             99


No 49 
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.60  E-value=2.1e-14  Score=119.17  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             23565510352036543079999999986256673143042010---012334455505775267881899999999863
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQSGETADTLASLRYMRT  362 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~  362 (608)
                      .+.+.++|++.|.|.|...|..+.+-|-+ .|+++...  .+..   ..-....+++++|+||.||+|.+++++++.||+
T Consensus       124 li~~A~~I~i~G~G~S~~vA~~~~~kl~r-~g~~~~~~--~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e~i~~~~~Ak~  200 (284)
T PRK11302        124 LLTQAKKISFFGLGASAAVAHDAQNKFFR-FNVPVVYF--DDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARE  200 (284)
T ss_pred             HHHCCCEEEEEECCCCHHHHHHHHHHHHH-CCCCEEEC--CCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99718958999648509999999999984-39814642--8789999999719998889997379998799999999998


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0244246511787631000241013674200--110007888999999999999977
Q gi|254780943|r  363 QGLTIGSLVNVLESTIARESDFIFPIKAGPE--IGVASTKAFTCQLLVLVIMAIYAG  417 (608)
Q Consensus       363 ~g~~tiaItN~~~S~la~~aD~~i~~~aG~E--i~VasTKsftaql~~l~llal~l~  417 (608)
                      +|+++++||+ ++|||++.||+++.+.....  ..- +.-+..+|+.++=+|...+.
T Consensus       201 ~ga~vIaIT~-~~SpLa~~AD~~L~~~~~e~~~~~~-~~~sriaql~viD~L~~~~~  255 (284)
T PRK11302        201 NGATVIGITA-AGSPLAREATLALTLDVPEDTDIYM-PMVSRIAQLTVIDVLATGFT  255 (284)
T ss_pred             CCCCEEEECC-CCCHHHHHCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf             7995899779-9981488689889846776540110-46999999999999999999


No 50 
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.59  E-value=2.4e-14  Score=118.78  Aligned_cols=133  Identities=23%  Similarity=0.235  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             356551035203654307999999998625--667314304201001233445550577526788189999999986302
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG  364 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g  364 (608)
                      +.+.++|++.|+|.|.   ++++++..++.  |.++..  -.|..  .|.+.+++++|++|.||||.+++++++.||++|
T Consensus        30 I~~a~~I~~~G~G~Sg---~va~~~a~rl~~lG~~~~~--~~d~~--~~~i~~~Dv~I~iS~SG~T~~~~~~~~~aK~~g  102 (179)
T cd05005          30 ILNAKRIFVYGAGRSG---LVAKAFAMRLMHLGLNVYV--VGETT--TPAIGPGDLLIAISGSGETSSVVNAAEKAKKAG  102 (179)
T ss_pred             HHCCCCEEEEEECCHH---HHHHHHHHHHHHCCCCEEE--ECCCC--CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9749948999856258---7799999999735980124--35655--577999999999819999568999999999879


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCHHH----HHH-HHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             44246511787631000241013674200----1100078----889-999999999999776212001577
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPE----IGVASTK----AFT-CQLLVLVIMAIYAGKVRGYINEEQ  427 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E----i~VasTK----sft-aql~~l~llal~l~~~~g~i~~~~  427 (608)
                      +++++||++++|+|++.||.++++.+..|    -..+++.    +|. ++++.+=.+++.+.+.+| ++.++
T Consensus       103 a~iI~IT~~~~S~la~~aD~~l~ip~~~~~~~~~~~~s~~pm~s~~e~~~l~~~Dal~~~lm~~~~-~~~~~  173 (179)
T cd05005         103 AKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELG-VSEEE  173 (179)
T ss_pred             CEEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCHHH
T ss_conf             919999798999789958999981874313888898765757759999999999999999999809-89999


No 51 
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.57  E-value=2.7e-14  Score=118.42  Aligned_cols=129  Identities=24%  Similarity=0.260  Sum_probs=89.8

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             2356551035203654307999999998625--66731430420100123344555057752678818999999998630
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQ  363 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~  363 (608)
                      .+.+.++|++.|+|.|.+.|   +++..++.  |.++...  .|-  ..+.+.+++++|++|.||||.+++++++.||++
T Consensus        26 ~I~~a~~I~v~G~G~Sg~ia---~~~a~rL~~~G~~~~~~--~d~--~~~~i~~~Dv~I~iS~SGeT~e~~~~~~~aK~~   98 (179)
T TIGR03127        26 KIIKAKRIFVAGAGRSGLVG---KAFAMRLMHLGFNVYVV--GET--TTPSIKKGDLLIAISGSGETESLVTVAKKAKEI   98 (179)
T ss_pred             HHHCCCCEEEEEECCHHHHH---HHHHHHHHHCCCEEEEE--CCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             99739909999955439999---99999998519757997--644--446699999999981999968999999999987


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCC----CCC---CCCHHH-HHHH-HHHHHHHHHHHHHHHCC
Q ss_conf             2442465117876310002410136742----001---100078-8899-99999999999776212
Q gi|254780943|r  364 GLTIGSLVNVLESTIARESDFIFPIKAG----PEI---GVASTK-AFTC-QLLVLVIMAIYAGKVRG  421 (608)
Q Consensus       364 g~~tiaItN~~~S~la~~aD~~i~~~aG----~Ei---~VasTK-sfta-ql~~l~llal~l~~~~g  421 (608)
                      |+++++||++++|+|++.||.++.+.+-    +|-   +++-|- +|.. .++.+=.+++.+.+.++
T Consensus        99 ga~ii~IT~~~~S~Lak~aD~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~Dal~~~l~~~~~  165 (179)
T TIGR03127        99 GATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKG  165 (179)
T ss_pred             CCEEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9929999798989779949999990686545777885666866749999999999999999999819


No 52 
>LOAD_sis consensus
Probab=99.57  E-value=1.1e-14  Score=121.12  Aligned_cols=87  Identities=28%  Similarity=0.295  Sum_probs=78.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             51035203654307999999998625667314304201001233445550577526788189999999986302442465
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      +.+++.+|||||+|+++++++++....+++.+..+++|.++.+...+++++|++||||+|+|++.+++.+|++|++++++
T Consensus         4 rii~ig~ggSs~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~SG~t~e~~~a~~~~~~~~~~~i~i   83 (90)
T LOAD_sis          4 RVVFIGAGGSALGAQLLAKALAERGAVIFVSVNVADEFLARVLALLDDDLLVIISKSGGTTETLLAALLAKKRGAKTIAI   83 (90)
T ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             29999970199999999999999974997699745311066887897888999878988899999999999889939999


Q ss_pred             ECCCCCC
Q ss_conf             1178763
Q gi|254780943|r  371 VNVLEST  377 (608)
Q Consensus       371 tN~~~S~  377 (608)
                      ||+++|+
T Consensus        84 t~~~~s~   90 (90)
T LOAD_sis         84 TNVAGST   90 (90)
T ss_pred             ECCCCCC
T ss_conf             6888889


No 53 
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.56  E-value=2e-13  Score=112.42  Aligned_cols=167  Identities=15%  Similarity=0.116  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             07899999974178999998715747664521111000023565510352036543079999999986256673143042
Q gi|254780943|r  247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS  326 (608)
Q Consensus       247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~as  326 (608)
                      +......|=+.+.-+.++++.+..    +...+.. ....+.+.++|+|.|-|+|.-.|...+|.|.+ .|+++.+....
T Consensus        92 ~~~~~~~~~~~~~~~~l~~t~~~l----~~~~l~~-av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~-ig~~~~~~~d~  165 (281)
T COG1737          92 GPESILEKLLAANIAALERTLNLL----DEEALER-AVELLAKARRIYFFGLGSSGLVASDLAYKLMR-IGLNVVALSDT  165 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf             546899999999999999998536----8999999-99999706957999648359999999999998-19966996684


Q ss_pred             HH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf             01-001233445550577526788189999999986302442465117876310002410136742001100-0788899
Q gi|254780943|r  327 EF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA-STKAFTC  404 (608)
Q Consensus       327 Ef-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va-sTKsfta  404 (608)
                      .+ ...-..+.+++++|+||.||+|.+++++++.||++|+++|+||+..+|||++.||++++.....+-..- ++=+..+
T Consensus       166 ~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a  245 (281)
T COG1737         166 HGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIA  245 (281)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             17999998389998899984899968999999999977992999839999936665477887126763222556078899


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999997762
Q gi|254780943|r  405 QLLVLVIMAIYAGKV  419 (608)
Q Consensus       405 ql~~l~llal~l~~~  419 (608)
                      ++.++-+|...+...
T Consensus       246 ~l~l~d~L~~~~~~~  260 (281)
T COG1737         246 QLALIDALITAVAQR  260 (281)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999987


No 54 
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.56  E-value=4.1e-14  Score=117.17  Aligned_cols=132  Identities=23%  Similarity=0.234  Sum_probs=102.8

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             5655103520365430799999999862--5667314304201001-233445550577526788189999999986302
Q gi|254780943|r  288 ANISGLLVSSCGTSYLAGLVGKFWFERL--ARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQG  364 (608)
Q Consensus       288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~--~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g  364 (608)
                      ..-.+|+++|+|.|   |++|+-+--++  +|.|+.+.-|.|-.+. -+.+.++++||+||-||||.+++.++..+|+.|
T Consensus        37 ~~~gkv~V~G~GkS---G~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g  113 (202)
T COG0794          37 ECKGKVFVTGVGKS---GLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLG  113 (202)
T ss_pred             HCCCCEEEECCCHH---HHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             24884899868726---899999999997359955996673010377567898889999808971779999999999759


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             44246511787631000241013674200---11000788899999999999997762120
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGY  422 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~  422 (608)
                      +++++||.+++|+|++.+|.++.+...+|   .+.+.|-+-+.|+..-..++..+-+.++.
T Consensus       114 ~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~~~f  174 (202)
T COG0794         114 AKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARGF  174 (202)
T ss_pred             CCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf             9489995899986787468699736744468676765203678876330888999998378


No 55 
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.56  E-value=8e-14  Score=115.16  Aligned_cols=130  Identities=19%  Similarity=0.166  Sum_probs=95.5

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             2356551035203654307999999998625667314304201-001233445550577526788189999999986302
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG  364 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g  364 (608)
                      .+.+.++|++.|.|.|+..|....+-|-+ .|+++.+..-..+ ...-..+.+++++|+||.||+|.+++++++.||++|
T Consensus       137 li~~A~~I~i~G~G~S~~vA~~~~~kl~r-lG~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e~i~~~~~Ak~~G  215 (293)
T PRK11337        137 FFYQARQRDLYGAGGSNAICADVQHKFLR-IGVRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSDVKAAVELAKQNG  215 (293)
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             99827970899857269999999999998-59804764777899999971899988999818999889999999999879


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44246511787631000241013674200--110007888999999999999977
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPE--IGVASTKAFTCQLLVLVIMAIYAG  417 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E--i~VasTKsftaql~~l~llal~l~  417 (608)
                      +++|+||+...|||++.||+++.+..-.+  .+. ++=+..+|+.++=+|-..+.
T Consensus       216 a~vI~IT~~~~SpLa~~aD~vL~~~~~e~~~~~~-~~~sr~~ql~viD~L~~~~~  269 (293)
T PRK11337        216 AKIICITHSYHSPIAKLADYIICSPAPETPLLGR-NASARILQLTLLDAFFVSVA  269 (293)
T ss_pred             CEEEEECCCCCCHHHHHCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf             9499976999984689589988648876443444-45999999999999999999


No 56 
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.55  E-value=2.4e-14  Score=118.79  Aligned_cols=124  Identities=16%  Similarity=0.198  Sum_probs=97.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             356551035203654307999999998625667314304201-0012334455505775267881899999999863024
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL  365 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~  365 (608)
                      +.+.++|++.|+|+|+.+|...++.|.+ .+.++........ .......++++++|++|+||+|.+++++++.||++|+
T Consensus        10 i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~~~~~~~~~~ak~~g~   88 (139)
T cd05013          10 LAKARRIYIFGVGSSGLVAEYLAYKLLR-LGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGA   88 (139)
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHHHHCC-CCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             9759928999808159999999999725-898279879627788887459999999997686363789999999998699


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             424651178763100024101367420011000788899999999999
Q gi|254780943|r  366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMA  413 (608)
Q Consensus       366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~lla  413 (608)
                      ++++||+..+|++++.||.++++...+..  .+...|++++..++++-
T Consensus        89 ~ii~IT~~~~s~l~~~ad~~l~~~~~~~~--~~~~~~~s~~~~~~l~d  134 (139)
T cd05013          89 KVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALID  134 (139)
T ss_pred             EEEEEECCCCCHHHHHCCEEEECCCCCCC--CCCCCHHHHHHHHHHHH
T ss_conf             79999799999779969999982886555--77688499999999999


No 57 
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55  E-value=2.1e-13  Score=112.20  Aligned_cols=177  Identities=20%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             07899999974178999998715747664521111000023565510352036543079999999986256673143042
Q gi|254780943|r  247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS  326 (608)
Q Consensus       247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~as  326 (608)
                      +|...=-+=|..+-++|++.-+. ++.+    .....+..+..-.+|+++|+|-|-|.|.=.+--|.. +|.|..-..|+
T Consensus         9 ~~~~~ak~vl~~E~~al~~l~~~-l~~~----f~~av~~i~~~kGkvi~~GvGKSg~ia~KiaaTl~S-tGtps~flhp~   82 (326)
T PRK10892          9 DFQQAGKEVLAIEREGLAELDQY-INQD----FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPG   82 (326)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHC-CCCCCEECCHH
T ss_conf             89999999999999999999987-6678----999999998289988998386579999999999865-48751545743


Q ss_pred             HHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHH
Q ss_conf             0100123-344555057752678818999999998630244246511787631000241013674200---110007888
Q gi|254780943|r  327 EFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAF  402 (608)
Q Consensus       327 Ef~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsf  402 (608)
                      |..+.+. .+.+++++|++|.||||.|.++.+.++|+.|+++++||.+++|+|++.||.++.+..-+|   .+.|-|-|-
T Consensus        83 ea~HGDlG~i~~~D~~i~~S~SG~t~El~~ll~~~~~~~~~iI~it~~~~S~l~~~sd~~l~~~~~~Eacp~~laPTtSt  162 (326)
T PRK10892         83 EAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAPTSST  162 (326)
T ss_pred             HCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHH
T ss_conf             40646556777899899995898757787641787766985899956999966880887896578744665677751899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999999999999776212001577632
Q gi|254780943|r  403 TCQLLVLVIMAIYAGKVRGYINEEQERE  430 (608)
Q Consensus       403 taql~~l~llal~l~~~~g~i~~~~~~~  430 (608)
                      |+|++..=.||..+.+.|| ++.+++..
T Consensus       163 t~~lalgDala~~lm~~rg-F~~~dFa~  189 (326)
T PRK10892        163 TATLVMGDALAVALLKARG-FTAEDFAL  189 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf             9999999899999999849-99868976


No 58 
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53  E-value=1.5e-13  Score=113.22  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             5655103520365430799999999862566731430420100123-344555057752678818999999998630244
Q gi|254780943|r  288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLT  366 (608)
Q Consensus       288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~  366 (608)
                      ..-.+|+++|+|-|-|.|.=..--|.. +|.|..-..|+|..+.+. .+.+++++|++|.||||.|.+..+.++|+.|++
T Consensus        40 ~~~G~vi~~GvGKSg~ia~KiaaTl~S-tGtps~f~hp~ea~HGDlG~i~~~D~~i~~S~SG~t~El~~~~~~~k~~~~~  118 (321)
T PRK11543         40 HCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIA  118 (321)
T ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHHC-CCCCEEECCCHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             189988999276579999999999865-4886543670111556656787899899995898817788772788766986


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             246511787631000241013674200---1100078889999999999999776212001577632
Q gi|254780943|r  367 IGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE  430 (608)
Q Consensus       367 tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~  430 (608)
                      +++||.+++|+|++.||.++.+..-+|   .+.|-|-|-|+|++..=.||..+.+.|+ ++.+++..
T Consensus       119 ii~it~~~~S~Lak~sd~~l~~~~~~Eacp~~LaPTtStt~~lalGDALAv~lm~~r~-F~~~dFa~  184 (321)
T PRK11543        119 LLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARG-FNEEDFAR  184 (321)
T ss_pred             EEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf             8999789999768826948972665666656777508999999998899999999959-99878976


No 59 
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.52  E-value=5.1e-13  Score=109.59  Aligned_cols=206  Identities=20%  Similarity=0.254  Sum_probs=121.1

Q ss_pred             CCEEEEEECCCHHHHHH--HHHHHHHHC---CCCCEEEEEEEECCEEEEEECCCCHH-HHHHHHCCCCCCCCEEEEEECC
Q ss_conf             96699997250127999--999997631---58743489999589299994586589-9887521034786544651045
Q gi|254780943|r    1 MCGIVGIVGRESVGERL--FKALKRLEY---RGYDSSGMATICDGKIQCVRAQGKLS-ELEKELNKKPLKGNIGIAHTRW   74 (608)
Q Consensus         1 MCGI~G~~~~~~~~~~l--~~~L~~Le~---RG~Ds~Gia~~~~~~i~~~K~~g~i~-~l~~~~~~~~~~~~~gIgHtR~   74 (608)
                      ||=++|+.++.+. ..+  ..+..+..-   .=.|.+||+++.++.+.++|+.-.+- +........++++.+.|+|+|-
T Consensus         1 MCrlLg~~g~~p~-~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHvR~   79 (252)
T COG0121           1 MCRLLGMHGNPPT-DSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHVRK   79 (252)
T ss_pred             CCEEEEECCCCCC-HHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCEEEEEEEC
T ss_conf             9546200079830-324230455334447887999606999749921797179864126466620113576479999720


Q ss_pred             CCCCCCCCCCCCCEEEC----CEEEEECCEECCHHHH-HHHHHHCCCEEEECCCHHHHHHHHHHH----H---HHCCHH-
Q ss_conf             43889970026750238----8999976815068999-899997898897247615678887634----3---200102-
Q gi|254780943|r   75 ATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRL-KKEHFSSQQVFLTETDTEVIACLLEKF----I---KNGSSK-  141 (608)
Q Consensus        75 AT~G~~~~~NahP~~~~----~~~vvHNG~I~N~~el-r~~l~~~g~~f~s~tDsEvi~~li~~~----~---~~~~~~-  141 (608)
                      ||.|.++..|+||+..+    .+..+|||.|.+|..+ +..+     .-..+||+|.....+...    +   +.+.+- 
T Consensus        80 At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~-----~~~~~tds~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
T COG0121          80 ATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKL-----EPVGYTDSEAAFCGITDSERIFLLILKPGLDAL  154 (252)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             378856655789804157774079985680266541224466-----788741688998876544555553137772024


Q ss_pred             HHHHHHHH-----HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC----------------CCCCEEEECCCCCCCCCC
Q ss_conf             67799999-----988751222010046872389997499607760----------------896136613762011111
Q gi|254780943|r  142 KETMQKLM-----QCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGH----------------GEGEMFVGSDVTALTLLT  200 (608)
Q Consensus       142 ~~ai~~~~-----~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~----------------~~~~~~vaSd~~al~~~t  200 (608)
                      ..++.+..     ....|.+-++....    ...+..+|.|+.-..                ++..+++||++.--... 
T Consensus       155 ~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~viaS~plt~~~~-  229 (252)
T COG0121         155 FQAEIRALGLFNTLLSDGNYLFALCST----ALHLLSRGAPFGAARYLDDDEEPDLYRYTDPGDVVVVIASEPLTDNEP-  229 (252)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEC----CCEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEECCCCCCCC-
T ss_conf             567787765467766445633015602----442783078246788458866625666157996189997123558988-


Q ss_pred             CEEEECCCCEEEEEECCCC
Q ss_conf             0379827651889730574
Q gi|254780943|r  201 DKVTYMEDGDWAIIRNSGL  219 (608)
Q Consensus       201 ~~~~~L~dgei~~i~~~~~  219 (608)
                        -..+++|+++.++.++.
T Consensus       230 --w~~v~~g~~~~v~~~~~  246 (252)
T COG0121         230 --WTEVPPGELVTVKGGER  246 (252)
T ss_pred             --CEECCCCCEEEEECCCE
T ss_conf             --56837994899956935


No 60 
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.43  E-value=1.7e-12  Score=106.00  Aligned_cols=139  Identities=24%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHH-H-------HHHH----CCC----CCEEEECC---HHHC---CCCCCCCCCEEEE
Q ss_conf             2356551035203654307999999-9-------9862----566----73143042---0100---1233445550577
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKF-W-------FERL----ARL----KVEIDVSS---EFRY---RDFVYSSKWASLF  343 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~-~-------~e~~----~~i----~v~v~~as---Ef~y---~~~~~~~~tlvI~  343 (608)
                      .+++--|++.+|+|||=-.|..-.. +       .+++    +|=    ...++-|-   |.-.   ....++++++||+
T Consensus        54 ~l~~gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~~liAGG~~Al~~~~EgaED~~~~g~~dl~~~~~~~~DvvIg  133 (273)
T PRK05441         54 ALRSGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVG  133 (273)
T ss_pred             HHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99759829997476158899988986487668998991446768899986361102468889999999828996578999


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             52678818999999998630244246511787631000241013674200110007--8889999999999999776212
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRG  421 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g  421 (608)
                      ||-||.|+-|+.|+++||+.|+.|++|+|+++|++.+.+|+.|.+..|||+=--||  |+-|+|-++|-|++-...-..|
T Consensus       134 IaASG~TPyv~~al~~A~~~ga~ti~I~~n~~s~l~~~ad~~I~~~tGpEvitGSTRmKAGTAqK~iLNmiST~~mi~lG  213 (273)
T PRK05441        134 IAASGRTPYVIGALEYAREIGALTIAISCNPGSPISKEADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIKLG  213 (273)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             93688971899999999986995799853896200010681375178843002666545225999999999899999808


Q ss_pred             CHH
Q ss_conf             001
Q gi|254780943|r  422 YIN  424 (608)
Q Consensus       422 ~i~  424 (608)
                      ...
T Consensus       214 kVy  216 (273)
T PRK05441        214 KVY  216 (273)
T ss_pred             CCC
T ss_conf             612


No 61 
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.42  E-value=2.9e-12  Score=104.28  Aligned_cols=140  Identities=24%  Similarity=0.239  Sum_probs=100.8

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHH-H-------HHHH----CC----CCCEEEECCHH------HCCCCCCCCCCEEEE
Q ss_conf             2356551035203654307999999-9-------9862----56----67314304201------001233445550577
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKF-W-------FERL----AR----LKVEIDVSSEF------RYRDFVYSSKWASLF  343 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~-~-------~e~~----~~----i~v~v~~asEf------~y~~~~~~~~tlvI~  343 (608)
                      .+++--|++.+|.|||=--|..-.. +       .+++    +|    +...++.|.+.      .-....+.+++.||+
T Consensus        45 ~l~~gGRl~Y~GAGTSGrlgvlDa~E~~PTFg~~~~~v~gliAGG~~al~~~~E~aED~~~~g~~dl~~~~~~~~DvVIg  124 (257)
T cd05007          45 RLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIG  124 (257)
T ss_pred             HHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf             99659828998786058899988997398779998991102438899996453112566899999999808996458999


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             52678818999999998630244246511787631000241013674200110007--8889999999999999776212
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRG  421 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g  421 (608)
                      ||.||.|+.|+.++++||+.|+.|++|+|+++|++...+|+.|.+..|||+=--||  |+-|+|-++|-|++--..-..|
T Consensus       125 IsaSG~TPyv~~aL~~A~~~ga~ti~I~~n~~s~~~~~ad~~I~~~tGpEvi~GSTRmkaGTaqK~iLNmiST~~mi~lG  204 (257)
T cd05007         125 IAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLG  204 (257)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             94699985999999999986995787643886310002784687268850022354202257899999998899999808


Q ss_pred             CHHH
Q ss_conf             0015
Q gi|254780943|r  422 YINE  425 (608)
Q Consensus       422 ~i~~  425 (608)
                      ....
T Consensus       205 kV~~  208 (257)
T cd05007         205 KVYG  208 (257)
T ss_pred             CCCC
T ss_conf             6127


No 62 
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.35  E-value=8.3e-12  Score=101.15  Aligned_cols=138  Identities=23%  Similarity=0.211  Sum_probs=100.4

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCC----------------EEEECCH---HH---CCCCCCCCCCEEE
Q ss_conf             235655103520365430799999-99986256673----------------1430420---10---0123344555057
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGK-FWFERLARLKV----------------EIDVSSE---FR---YRDFVYSSKWASL  342 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~-~~~e~~~~i~v----------------~v~~asE---f~---y~~~~~~~~tlvI  342 (608)
                      .+++--|++.+|+|||=--|+.-. =+.-. .+.|-                .++-|.+   .-   -....+.++++||
T Consensus        54 ~l~~gGRL~YvGAGTSGRlgvlDa~E~~PT-fg~~~~~v~~liAGG~~Al~~~vEgaED~~~~g~~dl~~~~~~~~DvVI  132 (296)
T PRK12570         54 AFKQGGRLIYMGAGTSGRLGVLDASECPPT-FSVSPEMVIGLIAGGPDAMLTAIEGAEDDPELGAQDLKAIGLTSDDVVV  132 (296)
T ss_pred             HHHCCCEEEEECCCHHHHHHHHHHHHCCCC-CCCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf             996598399977870589999999872786-5899899676763889998640302666699999999980899544799


Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             752678818999999998630244246511787631000241013674200110007--888999999999999977621
Q gi|254780943|r  343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVR  420 (608)
Q Consensus       343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~  420 (608)
                      +||-||.|+-|+.|+++||+.|+.|++|+|+++|++...+|+.|.+..|||+=--||  |+-|+|-++|-|++--..-..
T Consensus       133 giaASG~TPyv~~al~~A~~~Ga~ti~i~~n~~s~l~~~ad~~I~~~tGpEvi~GSTRmKAGTAqK~vLNmiST~~mi~l  212 (296)
T PRK12570        133 GIAASGRTPYVIGALEYAKQIGATTVALSCNPDSPIAQLADIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRL  212 (296)
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             98468885149999999998599679862488324566267525407880676367542105699999999889999981


Q ss_pred             CCHH
Q ss_conf             2001
Q gi|254780943|r  421 GYIN  424 (608)
Q Consensus       421 g~i~  424 (608)
                      |...
T Consensus       213 GkVy  216 (296)
T PRK12570        213 GKSY  216 (296)
T ss_pred             CCCC
T ss_conf             8201


No 63 
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.34  E-value=4.8e-11  Score=95.82  Aligned_cols=220  Identities=22%  Similarity=0.293  Sum_probs=138.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf             9999997631587434899995-892999945865899887---521034786544651045438899700267502388
Q gi|254780943|r   17 LFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEG   92 (608)
Q Consensus        17 l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~   92 (608)
                      |+-.-+++|.+-.+...+.+.+ ..+--|||.......|.+   ++....+.+.++|.|.||+|+=-|++.-|||+.   
T Consensus       160 Ly~~Rk~~E~~~~~~~~fYi~SLSsrTIVYKGml~~~ql~~fY~DL~d~~f~S~~al~HsRFSTNTfPsW~lAQPfR---  236 (1483)
T PRK11750        160 LFIARRRAEKRLADDKDFYVCSLSNLVIIYKGLMMPADLPRFYLDLADLRLESAICVFHQRFSTNTLPRWPLAQPFR---  236 (1483)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHCHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCH---
T ss_conf             99999999997343788797316678068846888788867460007976568899788776788899875026151---


Q ss_pred             EEEEECCEECCHHHHHHHHHHCCCEE----------------EECCCHHHHHHHHHHHHHHCCHHHHHHHHHHH------
Q ss_conf             99997681506899989999789889----------------72476156788876343200102677999999------
Q gi|254780943|r   93 IAVTHNGIIENFSRLKKEHFSSQQVF----------------LTETDTEVIACLLEKFIKNGSSKKETMQKLMQ------  150 (608)
Q Consensus        93 ~~vvHNG~I~N~~elr~~l~~~g~~f----------------~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~------  150 (608)
                       .++|||.|---.-.+.-...+...+                ...+||-.+=+.++.+...|.++.+|+.-++.      
T Consensus       237 -~laHNGEINTirGN~nwm~ARe~~l~s~~~~dl~~l~Pii~~~~SDSa~lDn~lElLv~~Grsl~~A~~mliPeAw~~~  315 (1483)
T PRK11750        237 -YLAHNGEINTITGNRQWARARAYKFQTPLLPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNN  315 (1483)
T ss_pred             -HCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCC
T ss_conf             -0321627878888999999757643586523176528747999981788999999998749988999986187021188


Q ss_pred             -------------------HHHHHHHHHHHCCCCCCEEEEE---ECC-CCE-EEECCCCCEEEECCCCCCCCCCCEEE--
Q ss_conf             -------------------8875122201004687238999---749-960-77608961366137620111110379--
Q gi|254780943|r  151 -------------------CLTGSYSIAVIFEDDPHSIIVA---RKG-PPL-IIGHGEGEMFVGSDVTALTLLTDKVT--  204 (608)
Q Consensus       151 -------------------~l~G~ya~~il~~~~p~~i~~a---r~g-sPL-~iG~~~~~~~vaSd~~al~~~t~~~~--  204 (608)
                                         -++|.-++++.  +  ++.+.|   ||| .|+ ++-.+|+.+++|||.=.+.---++++  
T Consensus       316 ~~m~~~~rafYeY~s~~mEPWDGPAaI~ft--D--G~~iga~LDRNGLRP~Ry~iT~D~~vi~aSE~Gvv~~~~~~I~~k  391 (1483)
T PRK11750        316 PDMDPDLRAFYEFNSMHMEPWDGPAGIVMT--D--GRYAACNLDRNGLRPARYVITKDRLITLASEVGIWDYQPDEVVEK  391 (1483)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCEEEEEE--C--CCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHCEEC
T ss_conf             778989999999987216877785478860--6--988999603678885157884698899983378767988883045


Q ss_pred             -ECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHHH
Q ss_conf             -827651889730574100333222100011000121000014078999999
Q gi|254780943|r  205 -YMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEKE  255 (608)
Q Consensus       205 -~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~kE  255 (608)
                       -|.+|+++.++-..=++++..  +         +..+.+.+.+|..|..+.
T Consensus       392 gRL~PG~m~~vD~~~Gri~~d~--e---------ik~~la~~~Py~~Wl~~~  432 (1483)
T PRK11750        392 GRVGPGELLVIDTRTGRILHSA--E---------IDNDLKSRHPYKEWLEKN  432 (1483)
T ss_pred             CCCCCCCEEEEECCCCEEECHH--H---------HHHHHHHCCCHHHHHHHH
T ss_conf             7748972689987799684389--9---------999987509889999962


No 64 
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=99.28  E-value=5.3e-11  Score=95.52  Aligned_cols=134  Identities=24%  Similarity=0.278  Sum_probs=106.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             103520365430799999999862--566731430420100123-34455505775267881899999999863024424
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERL--ARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIG  368 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~--~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~ti  368 (608)
                      ++++.|.|=|   |++||-+.-.+  +|-|..-.-|.|-.+-+- -+.++|+|++||-||||.|...-+-..|+.+.+.|
T Consensus         2 klVv~GiGKS---GliGkK~vAt~aSTGtPSfFlHPtEA~HGDLGMv~~~Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~li   78 (272)
T TIGR00393         2 KLVVVGIGKS---GLIGKKIVATFASTGTPSFFLHPTEALHGDLGMVEPRDVVLLISYSGESKELDKLIPSLKRLSVKLI   78 (272)
T ss_pred             EEEEEECCCH---HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             0899840706---6789999997412477553246434503643575867479998768875778775357775597089


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             6511787631000241013674200---110007888999999999999977621200157763
Q gi|254780943|r  369 SLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQER  429 (608)
Q Consensus       369 aItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~  429 (608)
                      ++|..|+|+|+|.+|+++.+..-.|   +..|=|=|=+.+++.-=-||..+-++|+ .++++..
T Consensus        79 a~T~~p~S~La~~Ad~~L~i~v~kEaCP~~lAPTsSt~~TL~lGDaLa~al~~Arn-F~~eDFA  141 (272)
T TIGR00393        79 AVTGKPNSSLARAADYVLDIKVEKEACPLNLAPTSSTTVTLALGDALAVALMKARN-FSEEDFA  141 (272)
T ss_pred             EECCCCCCCHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHH
T ss_conf             97288897245306545766775302789897356899999988999999985258-8842441


No 65 
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.28  E-value=3.6e-11  Score=96.75  Aligned_cols=167  Identities=24%  Similarity=0.234  Sum_probs=111.0

Q ss_pred             HHHHHHHHC----HHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE-E--E
Q ss_conf             999997417----89999987157476645211110000235655103520365430799999999862566731-4--3
Q gi|254780943|r  251 FMEKEIYEQ----PEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVE-I--D  323 (608)
Q Consensus       251 fm~kEI~EQ----P~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~-v--~  323 (608)
                      =|++-|.+|    |.++++.+-..    ...  -+.....|++--|++.+|.|||---+..-..=.---.++|-+ |  .
T Consensus        23 e~l~~~n~ed~~v~~AV~~alp~I----a~A--v~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~Vigl   96 (298)
T COG2103          23 EMLRLINDEDQKVPLAVEAALPQI----AAA--VDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGL   96 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHCCCCCCCCHHHEEEE
T ss_conf             999998666468899999976889----999--99999999729849997477654201032511789768886685656


Q ss_pred             EC----------------CHH---HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             04----------------201---00123344555057752678818999999998630244246511787631000241
Q gi|254780943|r  324 VS----------------SEF---RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDF  384 (608)
Q Consensus       324 ~a----------------sEf---~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~  384 (608)
                      +|                -|.   --.+..+.++++||+|+-||.|+-++.++++||+.|++|++|.|+++|++++.+|+
T Consensus        97 IAGG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~  176 (298)
T COG2103          97 IAGGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADI  176 (298)
T ss_pred             ECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCC
T ss_conf             43878999976337544487899999974999677799985079983035889998864974899604899634553683


Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             013674200110007--888999999999999977621200
Q gi|254780943|r  385 IFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRGYI  423 (608)
Q Consensus       385 ~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g~i  423 (608)
                      .|..-.|||+=--||  |+=|+|-++|-||+-...-..|..
T Consensus       177 ~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKv  217 (298)
T COG2103         177 AIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKV  217 (298)
T ss_pred             CEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             32525584010366433453299999999989999972211


No 66 
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=99.27  E-value=4.6e-11  Score=95.98  Aligned_cols=126  Identities=32%  Similarity=0.415  Sum_probs=105.9

Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf             42036145521366449999999999997422114423243144637880798718999448014688999999998279
Q gi|254780943|r  460 LAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG  539 (608)
Q Consensus       460 ~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg  539 (608)
                      +.+.++++|+|+|.+|.+|++++.||+++.+..+..+.+.||.|++.++++++.++|++...+++.+ ++..+++++.+|
T Consensus         2 l~~a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~-~~~~~~~a~~~g   80 (131)
T pfam01380         2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRD-LLEAAKLLKARG   80 (131)
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCC
T ss_conf             7678989999932699999999999998689877863658866067567999999999548986576-898789999849


Q ss_pred             CEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             808999565321000134662798688781566589999999999999
Q gi|254780943|r  540 GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCT  587 (608)
Q Consensus       540 ~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~  587 (608)
                      ++++.||+..+....... +.++.+|..+|...+-......|++..++
T Consensus        81 ~~~i~iT~~~~S~la~~a-d~~l~~~~~~e~~~~~t~s~~~~l~~l~~  127 (131)
T pfam01380        81 AKIIAITDSKGSPLAREA-DHVLYIIAGPEAGVASTKSLTLQLALLDA  127 (131)
T ss_pred             CEEEEEECCCCCHHHHHC-CEEEECCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             969999899999789968-99898799875654568999999999999


No 67 
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857   Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined .   These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=99.25  E-value=1.1e-08  Score=79.55  Aligned_cols=279  Identities=18%  Similarity=0.197  Sum_probs=148.5

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             35655103520365430799999999862-56673143042010012334455505775267881899999999863024
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERL-ARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL  365 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~-~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~  365 (608)
                      ..++++|+|.|+|-|==+|-..+-|.... ..+|+.|.-  +|.+ +...+.++++|++|=||.|.||+.|++.|+++++
T Consensus        24 ~e~~~~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvfvv~--DY~~-p~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~~~  100 (338)
T TIGR02128        24 IEAYDEIVISGMGGSGIAGRILSELLLEKSFEVPVFVVK--DYRL-PAFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGA  100 (338)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEC--CCCC-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             465562278725657899999999865324788888870--7789-6988985179998617866899999999986579


Q ss_pred             CEEEEECCCCCCCCCCC-CC---CCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             42465117876310002-41---0136742--001100078889999999999999776212001577632279998759
Q gi|254780943|r  366 TIGSLVNVLESTIARES-DF---IFPIKAG--PEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIP  439 (608)
Q Consensus       366 ~tiaItN~~~S~la~~a-D~---~i~~~aG--~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp  439 (608)
                      ++++||.  |-.|.+++ ..   ++-+--|  |=.+++  -+|.-++++-.. . .+.+..|    .+.+....-+..+-
T Consensus       101 ~~~aITS--GG~L~e~A~e~g~~~i~iP~G~qPR~a~p--ysfiPyl~~~~~-~-~~~~~~g----~d~~~~~~~~gd~~  170 (338)
T TIGR02128       101 KVIAITS--GGKLEEMAKEEGLDVIKIPKGLQPRAALP--YSFIPYLLTALI-L-MLIKPLG----IDIEEAERVLGDLK  170 (338)
T ss_pred             CEEEEEC--CCHHHHHCCCCCCCEEEECCCCCCCCCCC--HHHHHHHHHHHH-H-HHHCCCC----CCHHHHHHHHHHHH
T ss_conf             5599944--85388630114875688288611321040--568999999999-9-7621247----42436666788877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECC-CCHHHHHHHHHHHHHHHHHHC--CCCCHHHCCCCCHHHHCC----
Q ss_conf             99999999767744677987420-3614552136-644999999999999742211--442324314463788079----
Q gi|254780943|r  440 RKMFDVLQNIYSQIEKLCCGLAK-CQTLLYVGRG-SSYPLALEGALKIKEISYLHA--EGYAAGELKHGPIALITE----  511 (608)
Q Consensus       440 ~~i~~~l~~~~~~i~~~a~~~~~-~~~~~~lG~G-~~y~~A~EgALKlkE~syiha--eg~~agE~kHGP~ali~~----  511 (608)
                      +.+....+..+...+++|.++.. .+--++-|.. +..++|.===--|=|=|-++|  +=||  |+-|==+...+.    
T Consensus       171 E~l~~~~~~~k~~~~~LA~~i~~G~riPvIy~~~G~~~~iA~R~K~eiNENAK~pA~~~~~p--E~nHNei~~~~~~~~~  248 (338)
T TIGR02128       171 ERLIEDTEKLKALAKRLAEEIYNGYRIPVIYSSSGPTRPIAERWKNEINENAKIPAYFNILP--ELNHNEIEGLEDPKEV  248 (338)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCC
T ss_conf             65320165235789999999867920518870788714776777555533126532010057--8755521256786200


Q ss_pred             ---CCEEEEEECCCHHHHHH-HHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCEEECCCC----CHHHHHHHHHHH-HH
Q ss_conf             ---87189994480146889-999999982-798089995653210001346627986887----815665899999-99
Q gi|254780943|r  512 ---GTFVIAIAPYDRFFQKT-LSNIQEIVT-RGGRVIFITDEEGLKRQDFPSIETIVLPSM----GEIVSPIVFSLP-IQ  581 (608)
Q Consensus       512 ---~~~vi~i~~~~~~~~k~-~s~~~Ei~a-rg~~vi~I~~~~~~~~~~~~~~~~i~iP~~----~~~l~pl~~~ip-lQ  581 (608)
                         ..++|.....|+..-+. +.-.++|-. .|..++.|                 . |..    +..++-+++.+- .-
T Consensus       249 ~~l~~~~~~~~~~d~~r~~~r~~~T~~i~~~~g~~~~~I-----------------~-~~~rGGP~s~la~~~sL~~l~g  310 (338)
T TIGR02128       249 YGLYEIVFLSDESDHSRVKKRVDITEKILGEYGVSFISI-----------------Y-SVGRGGPNSLLARILSLIHLAG  310 (338)
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHEEEHHHCCCCCCCEEE-----------------E-EEECCCCCHHHHHHHHHHHHHH
T ss_conf             015124898873676511111101000332614332167-----------------5-3212786138999999999977


Q ss_pred             HHHHHHHHHHCCCCCCC
Q ss_conf             99999999838779889
Q gi|254780943|r  582 MIAYCTAVLIGTDVDQP  598 (608)
Q Consensus       582 llAy~~A~~~G~dpD~P  598 (608)
                      +.++++|..||.||+.=
T Consensus       311 ~~Sv~LA~l~g~~P~~~  327 (338)
T TIGR02128       311 LVSVKLAELRGVDPEPV  327 (338)
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             89898999847883136


No 68 
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.22  E-value=1.8e-10  Score=91.79  Aligned_cols=199  Identities=20%  Similarity=0.279  Sum_probs=123.4

Q ss_pred             HHHHHHHHHCCCCC-EEEEEEEE-CCEEEEEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEC
Q ss_conf             99999976315874-34899995-892999945865899887---52103478654465104543889970026750238
Q gi|254780943|r   17 LFKALKRLEYRGYD-SSGMATIC-DGKIQCVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE   91 (608)
Q Consensus        17 l~~~L~~Le~RG~D-s~Gia~~~-~~~i~~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~   91 (608)
                      |+-.-+++|++-.. ..++.+.+ ..+.-+||+......|.+   .+....+.+.+++.|.||+|+--|++.-|||+.  
T Consensus       148 Ly~~Rk~ie~~~~~~~~~fYi~SlSsrtIVYKGml~~~ql~~fY~DL~d~~~~s~~al~H~RFSTNTfPsW~lAqPfR--  225 (413)
T cd00713         148 LYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLAQPFR--  225 (413)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCH--
T ss_conf             999999999998844788699753514178641257899988616636976589998788305689999873027550--


Q ss_pred             CEEEEECCEECCH------HHHHHHHHH----------C-CCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----
Q ss_conf             8999976815068------999899997----------8-988972476156788876343200102677999999----
Q gi|254780943|r   92 GIAVTHNGIIENF------SRLKKEHFS----------S-QQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQ----  150 (608)
Q Consensus        92 ~~~vvHNG~I~N~------~elr~~l~~----------~-g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~----  150 (608)
                        .++|||.|--.      ..-|+....          . ...-...+||--+=+.++.+...|.++.+|+.-++.    
T Consensus       226 --~laHNGEINTi~GN~nwm~aRe~~~~s~~~~~~~~~l~Pi~~~~~SDSa~lDn~lElL~~~Grsl~~a~~mliPeaw~  303 (413)
T cd00713         226 --YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQ  303 (413)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHC
T ss_conf             --000276300156579999987776418753021886478769998446689999999974699899999873956343


Q ss_pred             ---------------------HHHHHHHHHHHCCCCCCEEEEE---ECC-CCEEEECCCC-CEEEECCCCCCCCCCCEEE
Q ss_conf             ---------------------8875122201004687238999---749-9607760896-1366137620111110379
Q gi|254780943|r  151 ---------------------CLTGSYSIAVIFEDDPHSIIVA---RKG-PPLIIGHGEG-EMFVGSDVTALTLLTDKVT  204 (608)
Q Consensus       151 ---------------------~l~G~ya~~il~~~~p~~i~~a---r~g-sPL~iG~~~~-~~~vaSd~~al~~~t~~~~  204 (608)
                                           -.+|.-++++.  +  ++.++|   ||| .|.=+-..++ .+++|||.=.+.--..+++
T Consensus       304 ~~~~m~~~~rafYeY~s~~mEPWDGPAai~ft--d--G~~iga~LDRNGLRP~Ry~iT~D~~~i~aSE~Gvv~~~~~~v~  379 (413)
T cd00713         304 NNPTMDPELRAFYEYHSSLMEPWDGPAAIAFT--D--GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVV  379 (413)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE--C--CCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHCE
T ss_conf             68779999999999998318877787589984--6--9889998226889842589974998999816986458878822


Q ss_pred             ---ECCCCEEEEEECCCCEECC
Q ss_conf             ---8276518897305741003
Q gi|254780943|r  205 ---YMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       205 ---~L~dgei~~i~~~~~~i~~  223 (608)
                         -|++|+++.++-..-++++
T Consensus       380 ~kgrL~PG~m~~vD~~~g~i~~  401 (413)
T cd00713         380 EKGRLGPGEMLLVDLEEGRILD  401 (413)
T ss_pred             ECCCCCCCCEEEEECCCCEECC
T ss_conf             1368799816999987896815


No 69 
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.20  E-value=5.9e-11  Score=95.24  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             0352036543079999999986256673143042010012--33445550577526788189999999986302442465
Q gi|254780943|r  293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRD--FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       293 I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~--~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      |++.|.|+|++.|...++.|.++.++++....++++.+..  ....+++++|++|+||+|.|++.+++.||++|+++++|
T Consensus         1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e~~~~~~~ak~~g~~vi~I   80 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI   80 (87)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             99997175699999999998751494179989528777646513789998999979979889999999999879989998


Q ss_pred             E
Q ss_conf             1
Q gi|254780943|r  371 V  371 (608)
Q Consensus       371 t  371 (608)
                      |
T Consensus        81 T   81 (87)
T cd04795          81 T   81 (87)
T ss_pred             E
T ss_conf             3


No 70 
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR)  is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=99.15  E-value=6.7e-10  Score=87.90  Aligned_cols=166  Identities=24%  Similarity=0.270  Sum_probs=113.6

Q ss_pred             HHHHHHHC----HHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHH---------------------
Q ss_conf             99997417----89999987157476645211110000235655103520365430799---------------------
Q gi|254780943|r  252 MEKEIYEQ----PEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGL---------------------  306 (608)
Q Consensus       252 m~kEI~EQ----P~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal---------------------  306 (608)
                      |.|=|-+|    |-++.+++..      ...--+.....|.+=-|++.+|.|||==-|.                     
T Consensus        21 ~~~l~N~eD~~v~~Av~~~lpd------i~~Avd~i~~~~~~GGRLiY~GAGTSGRLGvLDAvECPPTy~v~~~lV~Gi~   94 (291)
T TIGR00274        21 IVRLINEEDKLVPLAVEEVLPD------IAAAVDVIVEAFQKGGRLIYIGAGTSGRLGVLDAVECPPTYGVSPELVVGII   94 (291)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEH
T ss_conf             9998510244379999874288------9999999999986798089876875331022356468489898821014203


Q ss_pred             H-HHHHHHHHCCCCCEEEECCH--HH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf             9-99999862566731430420--10-01233445550577526788189999999986302442465117876310002
Q gi|254780943|r  307 V-GKFWFERLARLKVEIDVSSE--FR-YRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES  382 (608)
Q Consensus       307 ~-~~~~~e~~~~i~v~v~~asE--f~-y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a  382 (608)
                      + |.+.|.+-..   =.+...|  .. -++..++++|+||+|.=||.|+-++.+|++||+.|++||+|+++|+|.++..|
T Consensus        95 AGG~~A~~~a~E---G~ED~~~~G~~dL~~i~lt~~DvvvgIaASGrTPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~~A  171 (291)
T TIGR00274        95 AGGEEAILHAVE---GAEDSEEAGANDLKNIRLTKNDVVVGIAASGRTPYVIGALEYARKLGAKTIAIACNPESAVSKQA  171 (291)
T ss_pred             HHHHHHHHCCCC---CCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf             001688611336---74423588899987322563476888817897578999999999707825777417742231214


Q ss_pred             CCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             41013674200110007--888999999999999977621200157
Q gi|254780943|r  383 DFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRGYINEE  426 (608)
Q Consensus       383 D~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g~i~~~  426 (608)
                      |+.|.+-.|||+=--||  |+=|+|=++|-||+-.+.-..|+..++
T Consensus       172 d~~I~~~vGPEi~tGStRlKAgTa~KmvLNmLSTa~Mvk~GKvYeN  217 (291)
T TIGR00274       172 DVAIEVIVGPEILTGSTRLKAGTAQKMVLNMLSTAVMVKLGKVYEN  217 (291)
T ss_pred             CCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
T ss_conf             4300232044300000134799999999999889888874110015


No 71 
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.07  E-value=4.3e-10  Score=89.21  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=74.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             10352036543079999999986256673143042010012-33445550577526788189999999986302442465
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRD-FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~-~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      +|++.|+|.|--+|-..+-+++...++|+.+.-.    |.. ..++++||||++|.||+|.||+.+++.|+++|+++++|
T Consensus         1 ~Ivv~GmGGS~i~gd~l~~~~~~~~~vPv~v~rd----y~lP~~v~~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~i   76 (119)
T cd05017           1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKD----YTLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI   76 (119)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC----CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             9899956388899999999970579988798489----989875587878999928979689999999999859909998


Q ss_pred             ECCCCCCCCCCCCC
Q ss_conf             11787631000241
Q gi|254780943|r  371 VNVLESTIARESDF  384 (608)
Q Consensus       371 tN~~~S~la~~aD~  384 (608)
                      |  .+..|.+.|..
T Consensus        77 t--sGG~L~~~a~~   88 (119)
T cd05017          77 T--SGGKLLEMARE   88 (119)
T ss_pred             C--CCCHHHHHHHH
T ss_conf             4--99559999988


No 72 
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.82  E-value=4.9e-07  Score=67.95  Aligned_cols=157  Identities=20%  Similarity=0.209  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHH
Q ss_conf             2799987599999999976--77446779874203614552136644999999999999742211442324314463788
Q gi|254780943|r  431 LIRSLVEIPRKMFDVLQNI--YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIAL  508 (608)
Q Consensus       431 ~~~~L~~lp~~i~~~l~~~--~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~al  508 (608)
                      +.+++-.-|+.+.+++...  ........+.+.+.++++++|+|.+|=.|+=|.-=|.+++-++++...|.||+.-+.- 
T Consensus       254 MlKEI~EQP~~i~~tl~~ri~~~~~~~~~~~l~~i~~I~ivaCGTSyhA~lv~ky~~E~la~ipv~v~~ASEFry~~~~-  332 (604)
T PRK00331        254 MLKEIYEQPEVIRDTLEGRLDEDGEIDLDEDLKKIDRIYIVACGTSYHAGLVAKYWIESLAGIPVEVEIASEFRYRDPV-  332 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC-
T ss_conf             9999975489999999865086652225999863775899972568999999999999964999728886120345777-


Q ss_pred             HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC--------CCCCHHHHHHHHHHHH
Q ss_conf             07987189994480146889999999982798089995653210001346627986--------8878156658999999
Q gi|254780943|r  509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL--------PSMGEIVSPIVFSLPI  580 (608)
Q Consensus       509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i--------P~~~~~l~pl~~~ipl  580 (608)
                      +++++.+|++...+++.+ ++.+++..|.+|++++.|++..+.......+. .+.+        +.+..+.+   .++.+
T Consensus       333 ~~~~~l~i~iSQSGET~D-tl~al~~ak~~ga~tiaIvNv~~Ssiar~sD~-~i~~~aGpEi~VASTKafts---Ql~~l  407 (604)
T PRK00331        333 LSPNTLVIAISQSGETAD-TLAALRLAKELGAKTLAICNVPGSTLARESDL-VLYTHAGPEIGVASTKAFTT---QLAVL  407 (604)
T ss_pred             CCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-EEEECCCCEEEECCCCHHHH---HHHHH
T ss_conf             666438999757888378-99999999877994898606899532314581-78855723574312303799---99999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999998387
Q gi|254780943|r  581 QMIAYCTAVLIGT  593 (608)
Q Consensus       581 QllAy~~A~~~G~  593 (608)
                      -+||.++|..+|.
T Consensus       408 ~llal~la~~~~~  420 (604)
T PRK00331        408 YLLALALAKARGT  420 (604)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999998399


No 73 
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.75  E-value=3.4e-07  Score=69.06  Aligned_cols=148  Identities=11%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEEEECCHHHC
Q ss_conf             9999741789999987157476645211110000235655103520365430799-999999862566731430420100
Q gi|254780943|r  252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGL-VGKFWFERLARLKVEIDVSSEFRY  330 (608)
Q Consensus       252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~~i~v~v~~asEf~y  330 (608)
                      +.+++..-|+.+.+++...-+    .. . ......++.+.++++|.|.+|-.|+ -|.--+..++-++++.+.|.||.+
T Consensus       183 ~~~~L~~lp~~i~~~l~~~~~----~~-~-~la~~~~~~~~~~~lGrG~~~pia~~EgALKLKEisYIHAegy~agElKH  256 (347)
T PRK11382        183 IKNDLKQLPNALGHLVRTWEE----KG-R-QLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRH  256 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HH-H-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf             999999999999999985089----99-9-99999851774599824866165799999999988777523355877267


Q ss_pred             CCC-CCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             123-344555057752678818-999999998630244246511787631000241013674200110007888999999
Q gi|254780943|r  331 RDF-VYSSKWASLFISQSGETA-DTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLV  408 (608)
Q Consensus       331 ~~~-~~~~~tlvI~iSQSGeT~-dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~  408 (608)
                      .+. .+++++-||++--.+++. .+..+++..|.+|+.++.|....-+   ...+        |..+     .+ -.++.
T Consensus       257 GPiALId~~~PVi~i~~~d~~~~~~~~~i~evkarg~~vivid~~~~~---~~~~--------~~l~-----Pi-l~~iP  319 (347)
T PRK11382        257 GPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEIS---QGLH--------PWLA-----PF-LMFVP  319 (347)
T ss_pred             CCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCC--------HHHH-----HH-HHHHH
T ss_conf             708663799867999548505899999999999759908996141036---7754--------6784-----99-99999


Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999997762120
Q gi|254780943|r  409 LVIMAIYAGKVRGY  422 (608)
Q Consensus       409 l~llal~l~~~~g~  422 (608)
                      |.+||.+++..||.
T Consensus       320 lQLlAY~~A~~rG~  333 (347)
T PRK11382        320 MEWLCYYLSIYKDH  333 (347)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999997798


No 74 
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.73  E-value=1.4e-07  Score=71.72  Aligned_cols=118  Identities=24%  Similarity=0.198  Sum_probs=88.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r  465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
                      +++|+|+|.+|..|+-+...+++.+.++++.+.+.||.|.--..+++++.+|++...+++.+ ++..++..|.+|++++.
T Consensus         1 nI~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T~e-~i~a~~~ak~~g~~tia   79 (120)
T cd05710           1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKE-TVAAAKFAKEKGATVIG   79 (120)
T ss_pred             CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCEEEE
T ss_conf             99999961999999999999986678179998510124369876799969999837989789-99999999986995999


Q ss_pred             EECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             956532100013466279868878156658999999999999
Q gi|254780943|r  545 ITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYC  586 (608)
Q Consensus       545 I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~  586 (608)
                      ||+..+....+..+ .++..+...+..++  -....|+||-+
T Consensus        80 iT~~~~S~la~~aD-~~i~~g~e~~~~~t--k~~~~~~~al~  118 (120)
T cd05710          80 LTDDEDSPLAKLAD-YVIVYGFEIDAVEE--KYLLLYMLALR  118 (120)
T ss_pred             EECCCCCHHHHHCC-EEEECCCCCCCHHH--HHHHHHHHHHH
T ss_conf             98989898799679-88888996320208--99999999998


No 75 
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=98.70  E-value=4.9e-08  Score=74.93  Aligned_cols=107  Identities=24%  Similarity=0.285  Sum_probs=80.0

Q ss_pred             CCCCCCCEEEEECCCCCCHH------HHHHHHHHHHCCCCCEEE---------ECCHHHC-------CCCCCCCCCEEEE
Q ss_conf             23565510352036543079------999999986256673143---------0420100-------1233445550577
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAG------LVGKFWFERLARLKVEID---------VSSEFRY-------RDFVYSSKWASLF  343 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aa------l~~~~~~e~~~~i~v~v~---------~asEf~y-------~~~~~~~~tlvI~  343 (608)
                      .+++-.+|+..|.|.|+--|      +.++|.+|+ -.+|+-+.         .+.+|.|       -+..-.+.+++|+
T Consensus        37 ~l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR-~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLig  115 (176)
T COG0279          37 SLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER-PSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIG  115 (176)
T ss_pred             HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99769979997698524518999999860787527-89873686426377765650455889999999952788878999


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             5267881899999999863024424651178763100024101367420011000788
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKA  401 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKs  401 (608)
                      ||-||.+..++.|++.||++|.+|+++|..-+-.|+..+|+        |+.|||+++
T Consensus       116 ISTSGNS~nVi~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~--------~i~VPs~~t  165 (176)
T COG0279         116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDV--------EIRVPSTDT  165 (176)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCE--------EEECCCCCC
T ss_conf             81799977899999999876987999955887500011315--------786588862


No 76 
>PRK13938 phosphoheptose isomerase; Provisional
Probab=98.64  E-value=1.3e-07  Score=71.99  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=72.1

Q ss_pred             CCCCCCCEEEEECCCCCCHHH-HHHHHHHHH----CCCCCEEE---------ECCHHHCC-------CCCCCCCCEEEEE
Q ss_conf             235655103520365430799-999999862----56673143---------04201001-------2334455505775
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGL-VGKFWFERL----ARLKVEID---------VSSEFRYR-------DFVYSSKWASLFI  344 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~----~~i~v~v~---------~asEf~y~-------~~~~~~~tlvI~i  344 (608)
                      .+++-.+|++.|.|.|.--|+ .+.-+..++    -.+|+..-         .+.+|.|.       .....+++++|++
T Consensus        41 ~~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~vF~rQl~al~~~gDvLi~i  120 (196)
T PRK13938         41 GYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAI  120 (196)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99879989999686889999999999863335789984745447880788887624789999999999716899989997


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             26788189999999986302442465117876310002410136
Q gi|254780943|r  345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI  388 (608)
Q Consensus       345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~  388 (608)
                      |-||+|..+++|+++||++|.+|+++|...+..+.+.+|..+.+
T Consensus       121 StSGnS~NIi~A~~~Ak~~g~~~i~ltG~~gg~l~~l~D~~i~v  164 (196)
T PRK13938        121 STSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV  164 (196)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCEEEEE
T ss_conf             79999999999999999879989999889963177548989993


No 77 
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=98.63  E-value=1.3e-07  Score=72.03  Aligned_cols=101  Identities=16%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CCCEEEE--C-------CHHHC-------CCCCCCCCCEEE
Q ss_conf             3565510352036543079999999986256--------6731430--4-------20100-------123344555057
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLAR--------LKVEIDV--S-------SEFRY-------RDFVYSSKWASL  342 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~--------i~v~v~~--a-------sEf~y-------~~~~~~~~tlvI  342 (608)
                      +.+-.+|++.|.|.|-   ..++++-..+.+        +|+....  +       .++.|       -.....+++++|
T Consensus        30 ~~~g~kI~~~GNGgSa---~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~~~if~~ql~~~~~~gDili  106 (177)
T cd05006          30 LLNGGKILICGNGGSA---ADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDVLI  106 (177)
T ss_pred             HHCCCEEEEEECCHHH---HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             9879989999687408---8899999987357666888701797678778888875653299999999997446898899


Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             752678818999999998630244246511787631000241013674
Q gi|254780943|r  343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA  390 (608)
Q Consensus       343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a  390 (608)
                      ++|.||.|.++++|+++||++|++++++|...++.+.+.+|..+.+..
T Consensus       107 ~iS~sG~s~nii~a~~~ak~~g~~~i~ltg~~gg~l~~~~D~~i~vps  154 (177)
T cd05006         107 GISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPS  154 (177)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECC
T ss_conf             981899998999999999987998999987898616761998999699


No 78 
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.61  E-value=9.1e-06  Score=59.16  Aligned_cols=127  Identities=15%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHH-HHHHHHHHH
Q ss_conf             0235655103520365430799999999862566731430420100123-34455505775267881899-999999863
Q gi|254780943|r  285 YDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADT-LASLRYMRT  362 (608)
Q Consensus       285 ~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dt-i~Al~~ak~  362 (608)
                      ...++.++++++|+|-.|=+++-++--|..++.+++.+..++||++.+. .+++++.||..-+.++|.+. .++++..++
T Consensus       196 ~~~~~~~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~  275 (340)
T COG2222         196 EEYADEDRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKN  275 (340)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             97358977999778521799999999999870400155113410147597737995299994487404579999999986


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             024424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r  363 QGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY  422 (608)
Q Consensus       363 ~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~  422 (608)
                      .|++++.|-...       .+..++..   +.+-.- ......+.+++.++..++..||.
T Consensus       276 ~ga~v~vi~a~~-------~~~~~~~~---~~~~~l-~~~~~~~~v~~~~~~~~a~~rg~  324 (340)
T COG2222         276 YGAKVLVIDAKD-------AALDLIDQ---RVRHDL-APPLLSLVVAQRLAYALAVARGH  324 (340)
T ss_pred             HCCEEEEECCCC-------CCCCCCCC---CCCCHH-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             088699974766-------56677771---224136-67888878999999999986199


No 79 
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=98.59  E-value=2.5e-07  Score=69.97  Aligned_cols=103  Identities=20%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             CCCCCCCEEEEECCCCCC-HHHHHHHHHHHH----CCCCCEEE--------ECCHHHCC-------CCCCCCCCEEEEEC
Q ss_conf             235655103520365430-799999999862----56673143--------04201001-------23344555057752
Q gi|254780943|r  286 DFANISGLLVSSCGTSYL-AGLVGKFWFERL----ARLKVEID--------VSSEFRYR-------DFVYSSKWASLFIS  345 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~-Aal~~~~~~e~~----~~i~v~v~--------~asEf~y~-------~~~~~~~tlvI~iS  345 (608)
                      .+++-.+|++.|.|.|.- |...+.-+..++    .++|+...        .+.++.|.       .....+++++|++|
T Consensus        40 ~~~~g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~Lsd~s~lTa~~ND~g~e~iF~~Ql~~~~~~gDvLi~iS  119 (192)
T PRK00414         40 SFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIS  119 (192)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99879979999685889999999998746314466654325327677750100766488999999998178999999976


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             6788189999999986302442465117876310002410136
Q gi|254780943|r  346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI  388 (608)
Q Consensus       346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~  388 (608)
                      -||.|..+++|+++||++|.+++++|...+..+...+|..+.+
T Consensus       120 ~SGnS~Nii~A~~~Ak~~g~~~i~ltG~~GG~l~~l~D~~i~V  162 (192)
T PRK00414        120 TSGNSGNIIKAIEAAREKGMKVITLTGKDGGKMAGLADIEIRV  162 (192)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
T ss_conf             8999999999999999889989999779961477608979991


No 80 
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=98.58  E-value=6.2e-08  Score=74.19  Aligned_cols=131  Identities=23%  Similarity=0.297  Sum_probs=88.8

Q ss_pred             HHHHHCHHHHHHHH--HCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHCCCCCEE---
Q ss_conf             99741789999987--157476645211110000235655103520365430------7999999998625667314---
Q gi|254780943|r  254 KEIYEQPEAISRVL--SHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYL------AGLVGKFWFERLARLKVEI---  322 (608)
Q Consensus       254 kEI~EQP~~l~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~------Aal~~~~~~e~~~~i~v~v---  322 (608)
                      +|..|.-+++.+.+  +...+.-.+.+  -+.-..|++-.+|+++|.|+|.-      |-++++|-+|| -++|+-+   
T Consensus         3 ~~l~~~~~~l~~~~~De~~~~Ai~~aa--~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR-~glPAIAL~t   79 (186)
T TIGR00441         3 KELTEAAEALEKSLKDEALIEAIQRAA--LLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLER-PGLPAIALNT   79 (186)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCCCHHHHHH
T ss_conf             678999999999873045088999999--9999999808908985685043358889998716400026-7764677762


Q ss_pred             ------EECCHHHC-------CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCC
Q ss_conf             ------30420100-------1233445550577526788189999999986302442465117876310002---4101
Q gi|254780943|r  323 ------DVSSEFRY-------RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES---DFIF  386 (608)
Q Consensus       323 ------~~asEf~y-------~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a---D~~i  386 (608)
                            -++.+|.|       -+.+-.++|+.++||-||.|.+++.|++.||++|.+||++|..-|-.|+..+   |.-|
T Consensus        80 D~S~Ltai~NDygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l  159 (186)
T TIGR00441        80 DISILTAIANDYGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVEL  159 (186)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             23532320011025678777766328898688874247670889999998845796699972178631133578886056


Q ss_pred             C
Q ss_conf             3
Q gi|254780943|r  387 P  387 (608)
Q Consensus       387 ~  387 (608)
                      -
T Consensus       160 ~  160 (186)
T TIGR00441       160 R  160 (186)
T ss_pred             E
T ss_conf             7


No 81 
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.53  E-value=6.4e-06  Score=60.20  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHH---HH---H-----HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH-HCCCCCH
Q ss_conf             279998759999999997---67---7-----4467798742036145521366449999999999997422-1144232
Q gi|254780943|r  431 LIRSLVEIPRKMFDVLQN---IY---S-----QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYL-HAEGYAA  498 (608)
Q Consensus       431 ~~~~L~~lp~~i~~~l~~---~~---~-----~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syi-haeg~~a  498 (608)
                      +.+++-.-|+.+.++|..   ..   .     ......+.+.+.++++++|+|.+|=.++=|.-=|.+++.+ +.+...+
T Consensus       332 MlKEI~EQP~ai~~tL~~~gri~~~~~~i~l~~l~~~~~~l~~i~rI~iVACGTSyhAglvaky~~E~la~i~~V~v~~a  411 (691)
T PTZ00295        332 TIKEIHEQPMTLSRSLNNGGRISDYNSRVKLGGLDPYKDELLKIENLILTGCGTSFYAALFAKYLMRYLSCFNTVQVMDA  411 (691)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             79998754999999997416646777705316751448998618859999854889999999999999539997689840


Q ss_pred             HHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC--------CCCCHH
Q ss_conf             431446378807987189994480146889999999982798089995653210001346627986--------887815
Q gi|254780943|r  499 GELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL--------PSMGEI  570 (608)
Q Consensus       499 gE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i--------P~~~~~  570 (608)
                      .||.--|+  .++++.+|++...+++.+ ++.++++.+.+|++++.|++-.+.......+. ++.+        +.+..+
T Consensus       412 sEf~~~~~--~~~~~lvI~ISQSGETAD-TLaALr~AK~~G~~tlaIvNv~gSsiaReaD~-~i~t~AGpEIgVASTKaF  487 (691)
T PTZ00295        412 IEINVSVL--PKEHAGVIFISQSGETRD-VIKACKLAEDLGIPKLSVVNSVGSTIARMTGC-GVYLNAGREVAVASTKAF  487 (691)
T ss_pred             HHHCCCCC--CCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCHHHEECCE-EEEECCCCEEEEEECHHH
T ss_conf             12014578--987753999757788567-99999999976993899954788725304463-268247764678704899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf             6658999999999999999838-77988
Q gi|254780943|r  571 VSPIVFSLPIQMIAYCTAVLIG-TDVDQ  597 (608)
Q Consensus       571 l~pl~~~iplQllAy~~A~~~G-~dpD~  597 (608)
                         ...++.|.+||.++|..|| ++++.
T Consensus       488 ---tsQl~~L~llal~la~~~~~l~~~~  512 (691)
T PTZ00295        488 ---SSQVSVLSLIANWFAQHRKGISSGK  512 (691)
T ss_pred             ---HHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             ---9999999999999998608987899


No 82 
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=98.51  E-value=1.5e-05  Score=57.54  Aligned_cols=137  Identities=26%  Similarity=0.269  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC---HHHHCCCCEEEEEECCCHHHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463---788079871899944801468
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP---IALITEGTFVIAIAPYDRFFQ  526 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP---~ali~~~~~vi~i~~~~~~~~  526 (608)
                      .+.+.+.++.+.++++++|+|.|.+.++|.+.+.||..+-. ++..++..   |++   .+.+.++..+|++.-.+.+.+
T Consensus       117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~---~~~~~~~~~~~~~Dv~i~iS~sG~t~e  192 (281)
T COG1737         117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDT---HGQLMQLALLTPGDVVIAISFSGYTRE  192 (281)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEECCC---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf             99999999999706957999648359999999999998199-66996684---179999983899988999848999689


Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHH----HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             899999999827980899956532100013466279868878--156----658999999999999999838
Q gi|254780943|r  527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIV----SPIVFSLPIQMIAYCTAVLIG  592 (608)
Q Consensus       527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l----~pl~~~iplQllAy~~A~~~G  592 (608)
                       ++..++..+.+|+++|.||+..........+ .++.+|..+  .+-    +-+.....+.+|...++..++
T Consensus       193 -~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad-~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~  262 (281)
T COG1737         193 -IVEAAELAKERGAKVIAITDSADSPLAKLAD-IVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRG  262 (281)
T ss_pred             -HHHHHHHHHHCCCEEEEEECCCCCCHHHHCC-EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -9999999997799299983999993666547-788712676322255607889999999999999998746


No 83 
>PRK02947 hypothetical protein; Provisional
Probab=98.51  E-value=7.9e-07  Score=66.51  Aligned_cols=123  Identities=16%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEEC-----------CHH----------HCCCCCCCCCCEEEE
Q ss_conf             2356551035203654307999999998625667-314304-----------201----------001233445550577
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVS-----------SEF----------RYRDFVYSSKWASLF  343 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~a-----------sEf----------~y~~~~~~~~tlvI~  343 (608)
                      .+++-..|++.|+|-|   .+.+.=.|-+..++. +.+...           |-+          ......+.+++++|.
T Consensus        37 si~~gg~i~~fGtGHS---~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g~a~~il~~~~i~~~Dvlii  113 (247)
T PRK02947         37 SIANGGRIYVFGTGHS---HMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEGYAKLILDRYPIRPGDVLII  113 (247)
T ss_pred             HHHCCCEEEEECCCCH---HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             9975997999888516---4899987411476433130034110254786665312225509999998679999988999


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCCCCCCCCCCCCCC----------CCCCHHHHH
Q ss_conf             526788189999999986302442465117876-----------31000241013674200----------110007888
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLES-----------TIARESDFIFPIKAGPE----------IGVASTKAF  402 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S-----------~la~~aD~~i~~~aG~E----------i~VasTKsf  402 (608)
                      +|.||..+-.+++...||++|+++|+||+...|           .|...||.+|+-++-+-          ..|+.|=|.
T Consensus       114 ~SnSG~N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN~~p~GDA~l~i~g~~~kvgp~STi  193 (247)
T PRK02947        114 VSNSGRNAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDNGAPKGDAVLEIEGLEAKVGPTSTV  193 (247)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEECCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf             96787776899999999986996999966788167899897667115636678657999876589878977775757789


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780943|r  403 TCQLLVLVI  411 (608)
Q Consensus       403 taql~~l~l  411 (608)
                      ++..++-.+
T Consensus       194 ~g~~i~n~i  202 (247)
T PRK02947        194 VGVAILNAI  202 (247)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 84 
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=98.47  E-value=1.6e-05  Score=57.40  Aligned_cols=140  Identities=16%  Similarity=0.269  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL  529 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~  529 (608)
                      ++.++++++.+.+.+++++.|.|-+--+|...+.+|.-+.+   ..|..+|.-+.+   +.++-.+|++...+++.+ ++
T Consensus        20 ~~~i~~~~~~I~~a~~I~~~G~G~Sg~va~~~a~rl~~lG~---~~~~~~d~~~~~---i~~~Dv~I~iS~SG~T~~-~~   92 (179)
T cd05005          20 EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGL---NVYVVGETTTPA---IGPGDLLIAISGSGETSS-VV   92 (179)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC---CEEEECCCCCCC---CCCCCEEEEECCCCCCHH-HH
T ss_conf             99999999999749948999856258779999999973598---012435655577---999999999819999568-99


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC--------CHHHHH------HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999982798089995653210001346627986887--------815665------8999999999999999838779
Q gi|254780943|r  530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM--------GEIVSP------IVFSLPIQMIAYCTAVLIGTDV  595 (608)
Q Consensus       530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~--------~~~l~p------l~~~iplQllAy~~A~~~G~dp  595 (608)
                      ..++-.|.+|++++.||...+.......+ .++.+|..        .+-++|      -...+.+-.+++.+...+|+++
T Consensus        93 ~~~~~aK~~ga~iI~IT~~~~S~la~~aD-~~l~ip~~~~~~~~~~~~s~~pm~s~~e~~~l~~~Dal~~~lm~~~~~~~  171 (179)
T cd05005          93 NAAEKAKKAGAKVVLITSNPDSPLAKLAD-VVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVSE  171 (179)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999998799199997989997899589-99981874313888898765757759999999999999999999809899


Q ss_pred             CC
Q ss_conf             88
Q gi|254780943|r  596 DQ  597 (608)
Q Consensus       596 D~  597 (608)
                      +.
T Consensus       172 ~~  173 (179)
T cd05005         172 EE  173 (179)
T ss_pred             HH
T ss_conf             99


No 85 
>PRK13937 phosphoheptose isomerase; Provisional
Probab=98.46  E-value=1e-06  Score=65.78  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=72.8

Q ss_pred             CCCCCCCEEEEECCCCCCHHH-HHHHHHHHHC----CCCCEEE---------ECCHHHC-------CCCCCCCCCEEEEE
Q ss_conf             235655103520365430799-9999998625----6673143---------0420100-------12334455505775
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGL-VGKFWFERLA----RLKVEID---------VSSEFRY-------RDFVYSSKWASLFI  344 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~----~i~v~v~---------~asEf~y-------~~~~~~~~tlvI~i  344 (608)
                      .+++-.+|++.|.|.|-..|. .+.-+..++.    ++|+-.-         .+.++.|       -.....+++++|++
T Consensus        38 ~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~if~~ql~~~~~~gDili~i  117 (192)
T PRK13937         38 ALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYERVFARQVEALGRPGDVLIGI  117 (192)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99879989999686318889999999964135578985357767882877764277878999999999557889889997


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             267881899999999863024424651178763100024101367
Q gi|254780943|r  345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      |-||.|..+++|++.||++|.+++++|...+..+...+|..+.+.
T Consensus       118 S~SGnS~Nii~A~~~A~~~g~~~i~ltG~~gg~l~~~~D~~i~vp  162 (192)
T PRK13937        118 STSGNSPNVLAALEKARELGMTTIGLTGRDGGKMKELCDLLLIVP  162 (192)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEC
T ss_conf             799999799999999998799799998889605788399899958


No 86 
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855    Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars.   This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=98.44  E-value=3.1e-06  Score=62.37  Aligned_cols=323  Identities=20%  Similarity=0.228  Sum_probs=190.0

Q ss_pred             CCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHC--CCCCHHCCCHHHHHHHHHHH-HCH---HHHH
Q ss_conf             37620111110379827651889730574100333222100011000--12100001407899999974-178---9999
Q gi|254780943|r  191 SDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQ--IAPFLIGKGNYRHFMEKEIY-EQP---EAIS  264 (608)
Q Consensus       191 Sd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~--~~~~~~~kg~y~hfm~kEI~-EQP---~~l~  264 (608)
                      ||.+|= +|++     +.|+|+.+.++=|+=|..=+++.+.+=....  -|.|-+     .|=..++.. +.-   ++++
T Consensus        83 t~~NAH-PH~d-----~~g~iaVVHNGIIENy~~Lr~eL~~~G~~F~S~TDTEVI-----aHLie~~~~~~~~~L~~A~~  151 (628)
T TIGR01135        83 TDENAH-PHTD-----EGGRIAVVHNGIIENYAELREELEARGHVFSSDTDTEVI-----AHLIEEELRQEGGDLLEAVQ  151 (628)
T ss_pred             CCCCCC-CCCC-----CCCCEEEEECCEECCCHHHHHHHHHCCCEEEECCCCCHH-----HHHHHHHHCCCCCHHHHHHH
T ss_conf             877888-7226-----995279997782705488998998489289713674048-----88988984178841899999


Q ss_pred             HHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH----HCCCC--CCCCC
Q ss_conf             9871574766452111100002356551035203654307999999998625667314304201----00123--34455
Q gi|254780943|r  265 RVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF----RYRDF--VYSSK  338 (608)
Q Consensus       265 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf----~y~~~--~~~~~  338 (608)
                      +++....  ....+  -+  ....+.++|++-=.||..=.|+.|          .-+.+.||+-    .|...  .+.++
T Consensus       152 ~~~~~L~--G~YA~--a~--~~~~~P~~l~~AR~~SPLi~Gl~G----------~gE~F~ASD~~All~~T~~~~~L~dG  215 (628)
T TIGR01135       152 KALKQLR--GAYAL--AV--LHADHPETLVAARSGSPLIVGLVG----------DGENFVASDVTALLPYTRRVIYLEDG  215 (628)
T ss_pred             HHHHHHC--CCEEE--EE--EECCCCCEEEEEECCCCEEEEEEC----------CCCEEEECCHHHHHHHCCEEEEECCC
T ss_conf             9987626--62579--99--831889659999637876888835----------71269833827887327889995068


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEC--CCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             5057752678818999999998630244246-511--7876310002-41013674200110007888999999999999
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGS-LVN--VLESTIARES-DFIFPIKAGPEIGVASTKAFTCQLLVLVIMAI  414 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tia-ItN--~~~S~la~~a-D~~i~~~aG~Ei~VasTKsftaql~~l~llal  414 (608)
                      ++++ +|+-                   -+. |.|  ..+.+..|.. -..+.+..                        
T Consensus       216 d~a~-~~~d-------------------~~~~i~n~~~~g~~~~r~~R~~~~~~~~------------------------  251 (628)
T TIGR01135       216 DIAI-LTKD-------------------GVREIYNIFLEGAPVSREVRVEVIDWDL------------------------  251 (628)
T ss_pred             CEEE-EECC-------------------CEEEEEECCCCCCCCCCCCCEEEEECCH------------------------
T ss_conf             8899-8048-------------------6589972156787302234415861656------------------------


Q ss_pred             HHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf             97762120015776322-799987599999999976774467----------7987420361455213664499999999
Q gi|254780943|r  415 YAGKVRGYINEEQEREL-IRSLVEIPRKMFDVLQNIYSQIEK----------LCCGLAKCQTLLYVGRGSSYPLALEGAL  483 (608)
Q Consensus       415 ~l~~~~g~i~~~~~~~~-~~~L~~lp~~i~~~l~~~~~~i~~----------~a~~~~~~~~~~~lG~G~~y~~A~EgAL  483 (608)
                      .      ...+..|+-+ .+++-.-|..+.++|...-..-..          ....+.+.+++.++++|-+|=.+|=|-=
T Consensus       252 ~------~aeKggy~HfMlKEIyEQP~a~~~tL~~~~~~~~~~~~~~l~~~~~~~~l~~~~~I~IvACGTSYHAGLv~kY  325 (628)
T TIGR01135       252 D------AAEKGGYRHFMLKEIYEQPRALRDTLEGRLEEEGGVDLEELGADLAEELLKNIDRIQIVACGTSYHAGLVAKY  325 (628)
T ss_pred             H------HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             7------6347886563424226768999999987621576145112675211234315556899954016889999999


Q ss_pred             HHHHHHHHHCCCCCHHHCC--CCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCC
Q ss_conf             9999742211442324314--4637880798718999448014688999999998279--80899956532100013466
Q gi|254780943|r  484 KIKEISYLHAEGYAAGELK--HGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG--GRVIFITDEEGLKRQDFPSI  559 (608)
Q Consensus       484 KlkE~syihaeg~~agE~k--HGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg--~~vi~I~~~~~~~~~~~~~~  559 (608)
                      =|-..+-|+++---|-|||  +.+   +++++.+|+|...++|.+ |+.+++..|+||  ++++.|+|-.+.......+ 
T Consensus       326 ~iE~lA~iPv~Ve~ASEfRYr~~~---~~~~~L~I~ISQSGETAD-TL~ALr~aK~~G~~~~~L~IcNv~gS~l~Re~D-  400 (628)
T TIGR01135       326 LIERLAGIPVEVEVASEFRYRKPV---VDKKTLVIAISQSGETAD-TLEALRLAKELGLYAKTLGICNVPGSTLTREAD-  400 (628)
T ss_pred             HHHHHCCCCCEEEEECCEEECCCC---CCCCCEEEEEECCCCHHH-HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH-
T ss_conf             999861897289984120013677---588765999974861088-999999998479851589998368753357877-


Q ss_pred             CEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             27986---8878--156658999999999999999838779
Q gi|254780943|r  560 ETIVL---PSMG--EIVSPIVFSLPIQMIAYCTAVLIGTDV  595 (608)
Q Consensus       560 ~~i~i---P~~~--~~l~pl~~~iplQllAy~~A~~~G~dp  595 (608)
                      .++..   |+..  .=-+-...++.|++||-.+|..||..-
T Consensus       401 ~~L~t~AGpEIGVAsTKaFt~Ql~~L~~L~~~~a~~~g~~~  441 (628)
T TIGR01135       401 HTLYTRAGPEIGVASTKAFTAQLTVLYLLALALAKARGTLS  441 (628)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             87765069711145458899999999999999998537555


No 87 
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.42  E-value=2.4e-06  Score=63.19  Aligned_cols=129  Identities=14%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHH-HHHHHHHCC
Q ss_conf             35655103520365430799999999862566731430420100123-3445550577526788189999-999986302
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLA-SLRYMRTQG  364 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~-Al~~ak~~g  364 (608)
                      +...++++++|+|.+|=.|+=++--|...+.+++..+.+.||++.+. .+++++.||++...|.+.+... .++..+++|
T Consensus        10 ~~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~   89 (153)
T cd05009          10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARG   89 (153)
T ss_pred             HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             84788089994897889999999999999899832676888713739986689867998144378888999999999659


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             4424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY  422 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~  422 (608)
                      +.++.|++..+.  ....|..+.+..-++     .-+-...++.+.+||.+++..+|.
T Consensus        90 ~~v~~i~~~~~~--~~~~~~~~~~p~~~~-----~~~~~~~~i~~Q~la~~~a~~~G~  140 (153)
T cd05009          90 AKVIVITDDGDA--KDLADVVIRVPATVE-----ELSPLLYIVPLQLLAYHLAVARGI  140 (153)
T ss_pred             CEEEEEECCCCC--CCCCCEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             849999778643--455761687899727-----889999999999999999998097


No 88 
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.40  E-value=7e-06  Score=59.94  Aligned_cols=131  Identities=23%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r  452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN  531 (608)
Q Consensus       452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~  531 (608)
                      .+++.++.+.+++++++.|.|.++.+|.+.+.||..+- .+++-++..+..+.....++++..+|++...++. ..++..
T Consensus         2 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~-~~~~~~   79 (139)
T cd05013           2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLG-KPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEA   79 (139)
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHH
T ss_conf             79999999975992899980815999999999972589-8279879627788887459999999997686363-789999


Q ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf             9999827980899956532100013466279868878--15665899999999999
Q gi|254780943|r  532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIVSPIVFSLPIQMIAY  585 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l~pl~~~iplQllAy  585 (608)
                      ++..+.+|++++.||+.......+..+ ..+.+|...  .-..++...+|.+.+.-
T Consensus        80 ~~~ak~~g~~ii~IT~~~~s~l~~~ad-~~l~~~~~~~~~~~~~~~s~~~~~~l~d  134 (139)
T cd05013          80 AEIAKERGAKVIAITDSANSPLAKLAD-IVLLVSSEEGDFRSSAFSSRIAQLALID  134 (139)
T ss_pred             HHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999998699799997999997799699-9998288655577688499999999999


No 89 
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=98.39  E-value=1.7e-05  Score=57.34  Aligned_cols=139  Identities=17%  Similarity=0.260  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHH
Q ss_conf             74467798742036145521366449999999999997422114423243144637880798718999448014688999
Q gi|254780943|r  451 SQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLS  530 (608)
Q Consensus       451 ~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s  530 (608)
                      +.+++..+.+.+++++++.|.|-+..+|...+.||.-+.+   ..|..++..+++   +.++..+|++...+++.+ ++.
T Consensus        18 ~~i~~~v~~I~~a~~I~v~G~G~Sg~ia~~~a~rL~~~G~---~~~~~~d~~~~~---i~~~Dv~I~iS~SGeT~e-~~~   90 (179)
T TIGR03127        18 EELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGF---NVYVVGETTTPS---IKKGDLLIAISGSGETES-LVT   90 (179)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC---EEEEECCCCCCC---CCCCCEEEEECCCCCCHH-HHH
T ss_conf             9999999999739909999955439999999999985197---579976444466---999999999819999689-999


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC---C--H---HHHHHH------HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999982798089995653210001346627986887---8--1---566589------999999999999998387798
Q gi|254780943|r  531 NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM---G--E---IVSPIV------FSLPIQMIAYCTAVLIGTDVD  596 (608)
Q Consensus       531 ~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~---~--~---~l~pl~------~~iplQllAy~~A~~~G~dpD  596 (608)
                      .++..|.+|++++.||...+....+..+ .++.+|..   +  .   -+.|.-      ..+.+..+++.+...||.+++
T Consensus        91 ~~~~aK~~ga~ii~IT~~~~S~Lak~aD-~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~Dal~~~l~~~~~~~~~  169 (179)
T TIGR03127        91 VAKKAKEIGATVAAITTNPESTLGKLAD-VVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLDEE  169 (179)
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHCC-EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             9999998799299997989897799499-999906865457778856668667499999999999999999998198999


Q ss_pred             C
Q ss_conf             8
Q gi|254780943|r  597 Q  597 (608)
Q Consensus       597 ~  597 (608)
                      .
T Consensus       170 ~  170 (179)
T TIGR03127       170 E  170 (179)
T ss_pred             H
T ss_conf             9


No 90 
>PRK13936 phosphoheptose isomerase; Provisional
Probab=98.34  E-value=5.5e-06  Score=60.64  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEECCCCCCHHH-HHHHHHHHH----CCCCCEEE---------ECCHHHCC-------CCCCCCCCEEEEEC
Q ss_conf             35655103520365430799-999999862----56673143---------04201001-------23344555057752
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGL-VGKFWFERL----ARLKVEID---------VSSEFRYR-------DFVYSSKWASLFIS  345 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~----~~i~v~v~---------~asEf~y~-------~~~~~~~tlvI~iS  345 (608)
                      +++-.+|++.|.|.|..-|. .+..++.++    -++|+-..         .+.++.|.       .....+++++|++|
T Consensus        40 ~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~g~~~vf~rQl~a~~~~gDili~iS  119 (197)
T PRK13936         40 LLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDYSYNEVFSKQVRALGQPGDVLLAIS  119 (197)
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             98799899996878999999999998665412788875576436740110102787899999999998389999899996


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCCC
Q ss_conf             678818999999998630244246511787631000---2410136
Q gi|254780943|r  346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARE---SDFIFPI  388 (608)
Q Consensus       346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~---aD~~i~~  388 (608)
                      -||.+..+++|++.||++|.+|+++|...+..+...   +|..+-+
T Consensus       120 ~SGnS~Nii~A~~~A~~~g~~~i~ltG~dgg~l~~l~~~~Di~i~v  165 (197)
T PRK13936        120 TSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV  165 (197)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEEC
T ss_conf             9999989999999999859959999816853567525668989981


No 91 
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=98.30  E-value=8e-05  Score=52.56  Aligned_cols=112  Identities=18%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL  529 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~  529 (608)
                      .+.+++.++.+.+++++++.|.|.+.++|.+...||..+- .++..+.-.-+..-..+..+++..+|+|.-.+.+.+ ++
T Consensus       115 ~~~l~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~r~g-~~~~~~~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e-~i  192 (284)
T PRK11302        115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFN-VPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKS-LV  192 (284)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHH-HH
T ss_conf             9999999999971895899964850999999999998439-814642878999999971999888999737999879-99


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf             999999827980899956532100013466279868
Q gi|254780943|r  530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP  565 (608)
Q Consensus       530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP  565 (608)
                      ..++..+.+|+++|.||+. ........ +.++.++
T Consensus       193 ~~~~~Ak~~ga~vIaIT~~-~SpLa~~A-D~~L~~~  226 (284)
T PRK11302        193 ELAQLARENGATVIGITAA-GSPLAREA-TLALTLD  226 (284)
T ss_pred             HHHHHHHHCCCCEEEECCC-CCHHHHHC-CEEEEEC
T ss_conf             9999999879958997799-98148868-9889846


No 92 
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.28  E-value=8.2e-06  Score=59.45  Aligned_cols=120  Identities=25%  Similarity=0.276  Sum_probs=88.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r  465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
                      +++|+|+|.+|-.|+-++.=|...+.++++.+++.||.|.+. .+++++.+|++...+++.+ ++..++..+.+|++++.
T Consensus         1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvI~iS~SG~t~e-~i~a~~~a~~~g~~~i~   78 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGETAD-TLAALRLAKEKGAKTVA   78 (126)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCC-CCCCCCEEEEECCCCCCCC-HHHHHHHHHHCCCCEEE
T ss_conf             999999617999999999999997299889986067554478-8999859999868979800-78899999982994898


Q ss_pred             EECCCCCCCCCCCCCCEEECCCCCHHH-----HHHHHHHHHHHHHHHH
Q ss_conf             956532100013466279868878156-----6589999999999999
Q gi|254780943|r  545 ITDEEGLKRQDFPSIETIVLPSMGEIV-----SPIVFSLPIQMIAYCT  587 (608)
Q Consensus       545 I~~~~~~~~~~~~~~~~i~iP~~~~~l-----~pl~~~iplQllAy~~  587 (608)
                      ||+..+.......+ ..+.++.-+|.-     +-...+..++++|.++
T Consensus        79 iT~~~~S~la~~ad-~~i~~~~g~E~~~~~Tks~t~~~~~l~lla~~~  125 (126)
T cd05008          79 ITNVVGSTLAREAD-YVLYLRAGPEISVAATKAFTSQLLALLLLALAL  125 (126)
T ss_pred             EECCCCCHHHHHCC-EEEECCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             70699997899689-879869877678708699999999999999986


No 93 
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.23  E-value=9.8e-05  Score=51.95  Aligned_cols=131  Identities=21%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             74203614552136644999999999999742211442324314463788079871899944801468899999999827
Q gi|254780943|r  459 GLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTR  538 (608)
Q Consensus       459 ~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~ar  538 (608)
                      .+.+.++++++++|.+|-.++=+.-=|.+.+-++++--.+.||+=-... +.+++.+|+|...+++.+ ++.++++.+.+
T Consensus       279 ~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~-~~~~~L~I~ISQSGETaD-Tl~ALr~ak~~  356 (597)
T COG0449         279 ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPA-LNPNTLVIAISQSGETAD-TLAALRLAKEQ  356 (597)
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCC-CCCCCEEEEECCCCCCHH-HHHHHHHHHHC
T ss_conf             3345026999977688899999999999984898189963434552657-887857999826765378-99999999974


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9808999565321000134662798688781-----56658999999999999999838
Q gi|254780943|r  539 GGRVIFITDEEGLKRQDFPSIETIVLPSMGE-----IVSPIVFSLPIQMIAYCTAVLIG  592 (608)
Q Consensus       539 g~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~-----~l~pl~~~iplQllAy~~A~~~G  592 (608)
                      |++++.|++..+.......+ ..+.+..-+|     --+.-..++.|.+||.++|..+|
T Consensus       357 G~~tlaItNv~gSti~Resd-~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g  414 (597)
T COG0449         357 GAKTLAITNVPGSTIARESD-HTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRG  414 (597)
T ss_pred             CCCEEEEEECCCCHHHCCCC-EEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99789998158983214454-07775467733243333589999999999999767617


No 94 
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=98.22  E-value=6.9e-05  Score=53.02  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL  529 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~  529 (608)
                      .+.+++.++.+.+++++++.|.|.++.+|.+.+.||..+- +.+..+.-..+..--.+.++++..+|+|.-.+.+.+ ++
T Consensus       128 ~~~i~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~rlG-~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e-~i  205 (293)
T PRK11337        128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG-VRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSD-VK  205 (293)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHH-HH
T ss_conf             9999999999982797089985726999999999999859-804764777899999971899988999818999889-99


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf             99999982798089995653210001346627986887
Q gi|254780943|r  530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM  567 (608)
Q Consensus       530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~  567 (608)
                      ..++..|.||+++|.||+.......... +.++..|..
T Consensus       206 ~~~~~Ak~~Ga~vI~IT~~~~SpLa~~a-D~vL~~~~~  242 (293)
T PRK11337        206 AAVELAKQNGAKIICITHSYHSPIAKLA-DYIICSPAP  242 (293)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCHHHHHC-CEEEECCCC
T ss_conf             9999999879949997699998468958-998864887


No 95 
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=98.18  E-value=1.6e-05  Score=57.37  Aligned_cols=102  Identities=18%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCCCCCCEEEEECCCCCCHHH-HHHHHHHHHC----CCCCEEE---------ECCHHHCCC-------CCCCCCCEEEEE
Q ss_conf             235655103520365430799-9999998625----6673143---------042010012-------334455505775
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGL-VGKFWFERLA----RLKVEID---------VSSEFRYRD-------FVYSSKWASLFI  344 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~----~i~v~v~---------~asEf~y~~-------~~~~~~tlvI~i  344 (608)
                      .+.+-.+|++.|.|.|.--|. .+..++.++-    ++|+-.-         .+.+|.|.+       ..-.+++++|++
T Consensus        37 ~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~~~vF~rQl~alg~~gDiLi~i  116 (196)
T PRK10886         37 SLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAI  116 (196)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99879979998684748899999999964655689884056632670565431166779999999999856799989999


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCC
Q ss_conf             2678818999999998630244246511787631000---241013
Q gi|254780943|r  345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARE---SDFIFP  387 (608)
Q Consensus       345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~---aD~~i~  387 (608)
                      |-||.+.++++|++.||++|.+++++|...+..+...   +|..|.
T Consensus       117 StSGnS~Nii~Ai~~A~~~g~~~i~ltG~~gg~l~~l~~~~Di~I~  162 (196)
T PRK10886        117 STRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR  162 (196)
T ss_pred             ECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEE
T ss_conf             4899998999999999988998999976886236651576798998


No 96 
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum.  Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase),  asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS).  The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.17  E-value=4e-06  Score=61.65  Aligned_cols=132  Identities=19%  Similarity=0.367  Sum_probs=92.4

Q ss_pred             CC--EE-ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             75--02-388999976815068999899997898897247615678887634--32001026779999998875122201
Q gi|254780943|r   86 HP--HC-IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKF--IKNGSSKKETMQKLMQCLTGSYSIAV  160 (608)
Q Consensus        86 hP--~~-~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~--~~~~~~~~~ai~~~~~~l~G~ya~~i  160 (608)
                      ||  ++ ..+|-.+.-|.|+|-..||+.+..      |.+-.|++. .||.|  +++.+...  -..++++|+|+|||++
T Consensus        63 ~pR~F~~~DdIfClF~G~LdNl~~L~qqYGL------sK~aNE~~~-vIEAYrtLRDRgPYP--adqVv~dL~G~FAFVl  133 (224)
T cd01910          63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQYGL------SKTANEAML-VIEAYRTLRDRGPYP--ADQVVKDLEGSFAFVL  133 (224)
T ss_pred             CCCCEECCCCEEEEEECCHHHHHHHHHHHCC------CCCCCEEEE-HHHHHHHHHCCCCCC--HHHHHHHCCCCEEEEE
T ss_conf             7621011178799986633338889998673------666543646-287787641479998--8999975477279999


Q ss_pred             HCCCCCCEEEEEEC--CC-CEEEECCC-CCEEEECCCCCCCCCC-CEEEECCCCEEEEEECCCCEECCCCCCC
Q ss_conf             00468723899974--99-60776089-6136613762011111-0379827651889730574100333222
Q gi|254780943|r  161 IFEDDPHSIIVARK--GP-PLIIGHGE-GEMFVGSDVTALTLLT-DKVTYMEDGDWAIIRNSGLTIYDSQGYE  228 (608)
Q Consensus       161 l~~~~p~~i~~ar~--gs-PL~iG~~~-~~~~vaSd~~al~~~t-~~~~~L~dgei~~i~~~~~~i~~~~~~~  228 (608)
                      .+... +++|+||.  |+ ||++|+.. +..++|+|.-.+.+-+ +.+-.-+.|.+.. +..+...|.--..+
T Consensus       134 yD~~~-~t~f~A~D~~G~vPLywG~~aDGsv~~Sdd~~~lk~~C~ksfapFP~Gc~f~-S~gGL~sfehP~nk  204 (224)
T cd01910         134 YDKKT-STVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFH-SEGGLRSFEHPMNK  204 (224)
T ss_pred             EECCC-CEEEEEECCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCEEE-CCCCEEECCCCHHH
T ss_conf             97788-8199986789973217988688559995568888754511248899984176-68650204173621


No 97 
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=98.11  E-value=0.00016  Score=50.50  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH---HHHCCCCEEEEEECCCHHHH
Q ss_conf             774467798742036145521366449999999999997422114423243144637---88079871899944801468
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI---ALITEGTFVIAIAPYDRFFQ  526 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~---ali~~~~~vi~i~~~~~~~~  526 (608)
                      .+.+.+.++.+.+++++++.|.|.+.++|.+.+.||..+. +++..+.-.   |..+   +.++++..+|++.-.+++.+
T Consensus       119 ~~~l~~av~~i~~A~~I~i~G~G~S~~vA~~~~~kl~rig-~~~~~~~d~---~~~~~~~~~l~~~Dv~I~iS~sG~t~~  194 (282)
T PRK11557        119 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIG-INAVAERDM---HALLATVQALSPDDLLLAISYSGERRE  194 (282)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC-CCEEECCCH---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf             9999999999964895899970436999999999999809-963740886---899999981899998999859999789


Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf             89999999982798089995653210001346627986887
Q gi|254780943|r  527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM  567 (608)
Q Consensus       527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~  567 (608)
                       ++..++..+.+|+++|.||+..........+ .++.+|..
T Consensus       195 -~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD-~~L~~~~~  233 (282)
T PRK11557        195 -LNLAADEALRVGGKVLAITGFTPNALQQRAS-HCLYTIAE  233 (282)
T ss_pred             -HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC-EEEEECCC
T ss_conf             -9999999998799399972989981588699-99984785


No 98 
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.11  E-value=1.2e-05  Score=58.18  Aligned_cols=80  Identities=29%  Similarity=0.350  Sum_probs=70.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC-HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             4552136644999999999999742211442324314463-788079871899944801468899999999827980899
Q gi|254780943|r  466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP-IALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       466 ~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP-~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
                      ++++|.|.+..+|++.+.||.++..+++.++...++.|++ .++.+++.+++++...+++.| +...+++.+.+|++++.
T Consensus         1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e-~~~~~~~ak~~g~~vi~   79 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEE-LLAALEIAKELGIPVIA   79 (87)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf             99997175699999999998751494179989528777646513789998999979979889-99999999987998999


Q ss_pred             EE
Q ss_conf             95
Q gi|254780943|r  545 IT  546 (608)
Q Consensus       545 I~  546 (608)
                      ||
T Consensus        80 IT   81 (87)
T cd04795          80 IT   81 (87)
T ss_pred             EE
T ss_conf             83


No 99 
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.04  E-value=0.00023  Score=49.35  Aligned_cols=110  Identities=18%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-----ECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65510352036543079999999986256673143-----0420100-12334455505775267881899999999863
Q gi|254780943|r  289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID-----VSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRT  362 (608)
Q Consensus       289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~-----~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~  362 (608)
                      +++.|+.+|.|-|+-.+.++..++..+..-...+.     .+.++.- -..+-++.++++.+|-||.|.||+.+.+.+|+
T Consensus        78 ~~~~iV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~  157 (446)
T COG0166          78 KITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARK  157 (446)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             74439997875558999999998644046887459825788223467885268562799999589895889988999999


Q ss_pred             CC-------CCEEEEECCCCCCCCCCCC------CCCCCCCCCCCCCCH
Q ss_conf             02-------4424651178763100024------101367420011000
Q gi|254780943|r  363 QG-------LTIGSLVNVLESTIARESD------FIFPIKAGPEIGVAS  398 (608)
Q Consensus       363 ~g-------~~tiaItN~~~S~la~~aD------~~i~~~aG~Ei~Vas  398 (608)
                      ..       .+..+.|....+.++++++      ..++=..|+-.||.|
T Consensus       158 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~S  206 (446)
T COG0166         158 WLEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLS  206 (446)
T ss_pred             HHHHHHHHHHCEEEEECCCCHHHHHHCCCCCEEEEECCCCCCCCCCHHH
T ss_conf             9986466451479998287157888617785038988788887104027


No 100
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=98.02  E-value=2.6e-05  Score=56.01  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCE---EEE--------CCHHH-----CCC-----CCCCCCCEEEE
Q ss_conf             235655103520365430799999999862566-731---430--------42010-----012-----33445550577
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARL-KVE---IDV--------SSEFR-----YRD-----FVYSSKWASLF  343 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i-~v~---v~~--------asEf~-----y~~-----~~~~~~tlvI~  343 (608)
                      ...+-.+|+..|||-|+-.+   .-.|-+-.|+ |+.   +.+        +|-+.     |..     .-+.++++.|.
T Consensus        34 si~n~g~i~~FG~GHShm~a---eEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~DVliv  110 (243)
T COG4821          34 SIMNDGRIYVFGSGHSHMLA---EEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPNDVLIV  110 (243)
T ss_pred             HHHCCCEEEEECCCHHHHHH---HHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             98549879996486288999---999864378001132147716521352100045765317777899966887888999


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCCCCCCCCCC----------CCCCCCCCHHHHH
Q ss_conf             526788189999999986302442465117876-----------3100024101367----------4200110007888
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLES-----------TIARESDFIFPIK----------AGPEIGVASTKAF  402 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S-----------~la~~aD~~i~~~----------aG~Ei~VasTKsf  402 (608)
                      +|.||.-+--+++.+++|++||+++++|...-|           -|...+|.+++-+          +|-|+-|+.|-++
T Consensus       111 iSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~~ptSt~  190 (243)
T COG4821         111 ISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKVGPTSTV  190 (243)
T ss_pred             EECCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHCHHCCCCHHHHHHHCCEEEECCCCCCCHHEEECCCCCCCCCCCHH
T ss_conf             80799898443899999865976999854543231110154156776521056517986662101354743323674026


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999977
Q gi|254780943|r  403 TCQLLVLVIMAIYAG  417 (608)
Q Consensus       403 taql~~l~llal~l~  417 (608)
                      +.-+++-.+++-.+.
T Consensus       191 ~g~~ilqa~faeai~  205 (243)
T COG4821         191 SGVTILQATFAEAIE  205 (243)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 101
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.98  E-value=0.00014  Score=50.78  Aligned_cols=126  Identities=13%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCC-CHH-HHHHHHHHHH--CCC
Q ss_conf             035203654307999999998625--66731430420100123-3445550577526788-189-9999999863--024
Q gi|254780943|r  293 LLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGE-TAD-TLASLRYMRT--QGL  365 (608)
Q Consensus       293 I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGe-T~d-ti~Al~~ak~--~g~  365 (608)
                      |+|+|+|..|-.|+=++-=+.+++  -+.+....+.||++.+. .+++++.+|++-.+++ +.. ....++..|.  .++
T Consensus         1 vv~LGrG~~y~iA~EgALKlKEis~~yihae~ys~~e~KHGPiALid~~tpvi~~~~~d~~~~~~~~~li~ei~~~~~~~   80 (151)
T cd05010           1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA   80 (151)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98980688638899999999998876777512461124657563216997189995388188887657999998226897


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r  366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY  422 (608)
Q Consensus       366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~  422 (608)
                      ++++|++..+..+...+|..++.....+-..   -++. .++.+.|||.+++..+|.
T Consensus        81 ~ii~i~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~-~~iplQLlAy~~Av~rG~  133 (151)
T cd05010          81 RVIAISPESDAGIEDNSHYYLPGSRDLDDVY---LAFP-YILYAQLFALFNSIALGL  133 (151)
T ss_pred             EEEEEECCCCCCCCCCCCEEEECCCCCCHHH---HHHH-HHHHHHHHHHHHHHHCCC
T ss_conf             8999945886332356767964799875388---8899-999999999999998699


No 102
>KOG0399 consensus
Probab=97.97  E-value=0.00057  Score=46.64  Aligned_cols=213  Identities=19%  Similarity=0.305  Sum_probs=128.3

Q ss_pred             CCEEEEEECCCCHHHHHHH---HCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEEC------CHHHHHH
Q ss_conf             8929999458658998875---210347865446510454388997002675023889999768150------6899989
Q gi|254780943|r   39 DGKIQCVRAQGKLSELEKE---LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIE------NFSRLKK  109 (608)
Q Consensus        39 ~~~i~~~K~~g~i~~l~~~---~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~------N~~elr~  109 (608)
                      .++--++|+.-+...|...   +....++++.+|-|.|++|+--|++.-|||..    .+.|||.|-      |...-|+
T Consensus       255 sn~TIVYKGql~~~ql~~yY~DL~N~~y~S~~AlvHsRFSTNTfPsWdrAQPmR----~l~HNGEINTlrGN~NwMraRE  330 (2142)
T KOG0399         255 SNQTIVYKGQLRPEQLYNYYPDLTNAEYKSHFALVHSRFSTNTFPSWDRAQPMR----FLAHNGEINTLRGNKNWMRARE  330 (2142)
T ss_pred             CCCEEEEECCCCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCH----HHHCCCCEEEECCCHHHHHHHH
T ss_conf             575489804337899865241006554336010254201368898863105320----1221673111025166788777


Q ss_pred             HHHHCC-----------CEEEECCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHH-----------HHHHH--HHH-----
Q ss_conf             999789-----------88972476156788876343200-1026779999998-----------87512--220-----
Q gi|254780943|r  110 EHFSSQ-----------QVFLTETDTEVIACLLEKFIKNG-SSKKETMQKLMQC-----------LTGSY--SIA-----  159 (608)
Q Consensus       110 ~l~~~g-----------~~f~s~tDsEvi~~li~~~~~~~-~~~~~ai~~~~~~-----------l~G~y--a~~-----  159 (608)
                      -+.+.+           +.=...+||-.+-+.++.....| .++.+|+--++..           .+-.|  +-+     
T Consensus       331 g~mks~~~~~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpW  410 (2142)
T KOG0399         331 GVMKSAVFKDELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPW  410 (2142)
T ss_pred             HHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             76514201014563122346788731346679999998079782798987476977069987878889999986027888


Q ss_pred             -----HHCCCCCCEEEEE---ECC-CC-EEEECCCCCEEEECCCCCCCCCCCEEE---ECCCCEEEEEECCCCEECCCCC
Q ss_conf             -----1004687238999---749-96-077608961366137620111110379---8276518897305741003332
Q gi|254780943|r  160 -----VIFEDDPHSIIVA---RKG-PP-LIIGHGEGEMFVGSDVTALTLLTDKVT---YMEDGDWAIIRNSGLTIYDSQG  226 (608)
Q Consensus       160 -----il~~~~p~~i~~a---r~g-sP-L~iG~~~~~~~vaSd~~al~~~t~~~~---~L~dgei~~i~~~~~~i~~~~~  226 (608)
                           +.|.+  ++-..|   ||| .| =++=..++..++|||.-.+.-.-.++.   -|.+|.+..++-..-++++.+.
T Consensus       411 DGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~g~v~dd~e  488 (2142)
T KOG0399         411 DGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTELGQVVDDKE  488 (2142)
T ss_pred             CCCEEEEECC--CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEECHH
T ss_conf             8866898517--85454341357886403698319879995204555798799643167688718999843785876588


Q ss_pred             CCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             221000110001210000140789999997417899999871
Q gi|254780943|r  227 YEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLS  268 (608)
Q Consensus       227 ~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~  268 (608)
                      .+  +   .      .+...+|..|.-++|.+-.....+.+.
T Consensus       489 lK--~---r------is~~~py~~wl~~~~~~l~~~~~~~~~  519 (2142)
T KOG0399         489 LK--K---R------ISSRRPYGSWLSENIILLKPIKDSVLS  519 (2142)
T ss_pred             HH--H---H------HHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88--7---7------762186778888765530034443110


No 103
>KOG0573 consensus
Probab=97.96  E-value=7.6e-05  Score=52.71  Aligned_cols=145  Identities=19%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             CCEEEEEECCCHH-HHH-H-HHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             9669999725012-799-9-999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r    1 MCGIVGIVGRESV-GER-L-FKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH   77 (608)
Q Consensus         1 MCGI~G~~~~~~~-~~~-l-~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~   77 (608)
                      |||||--+.+... ... + ......+..||+|..+=...+.....+.-                 .+++  =|-|    
T Consensus         1 MCGI~~s~~~~~~l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f-----------------~~~v--L~lr----   57 (520)
T KOG0573           1 MCGIFLSVDKDLALNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLF-----------------ESSV--LSLR----   57 (520)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEE-----------------ECCE--EEEE----
T ss_conf             9358986347743211110468887860358971554642566606996-----------------1326--9984----


Q ss_pred             CCCCCCCCCCEEE-CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             8997002675023-889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r   78 GLPNKENSHPHCI-EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus        78 G~~~~~NahP~~~-~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      |   -.-.|||.. .+..+-.||.|+|-.           +-....||-.++.++... +.++++.    ..++.++|.|
T Consensus        58 G---~~t~Qpvv~d~~~vfl~NGeIyn~~-----------~s~~~~d~~~l~~~l~~~-~e~~~Il----~~i~~~qGp~  118 (520)
T KOG0573          58 G---YLTKQPVVEDDRYVFLFNGEIYNGE-----------KSDTLFDTDILAEELSNL-KESGDIL----DIIKSLQGPW  118 (520)
T ss_pred             E---EECCCCEECCCCEEEEECCEECCCC-----------CCCCCCHHHHHHHHHHCC-CCCCCHH----HHHHHCCCCC
T ss_conf             2---2036841436644898555532577-----------763212689999997418-7653388----9987416872


Q ss_pred             HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEE
Q ss_conf             220100468723899974--9-9607760896136
Q gi|254780943|r  157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMF  188 (608)
Q Consensus       157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~  188 (608)
                      |+++.+... +++|.-|.  | ..|.++.....+-
T Consensus       119 ~~iyY~~~~-~~LyfgRD~~GRrSLly~~~~~~f~  152 (520)
T KOG0573         119 AFIYYDVRS-DKLYFGRDDIGRRSLLYSLDPFNFS  152 (520)
T ss_pred             EEEEEECCC-CEEEEECCCCCCEEEEEEECCCCEE
T ss_conf             599997047-6799831655630146774267336


No 104
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=97.91  E-value=0.00017  Score=50.33  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             356551035203654307999999998625667314-----30420100-123344555057752678818999999998
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYM  360 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~a  360 (608)
                      .+++++|+.+|.|-|+--..+..-++.........+     ..+.+|.. -.....++|++|.+|-||.|.||+...+..
T Consensus        55 ~~~~~~vV~IGIGGS~LG~~ai~~aL~~~~~~~~~i~F~~N~Dp~~~~~~l~~l~~~~TlfiViSKSgtT~ET~~~~~~~  134 (409)
T PRK03868         55 KQAIKNIVVIGIGGSSLGVKAIYSMLKNKKQLKRELHFLDNTDPISINKTLKKINLEETLFIVISKSGTTIETISIFKYI  134 (409)
T ss_pred             HCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             52498799982552889999999984120458974999848898999999960893517999985999838999999999


Q ss_pred             HHC-------CCCEEEEECCCCCCCCCCCC
Q ss_conf             630-------24424651178763100024
Q gi|254780943|r  361 RTQ-------GLTIGSLVNVLESTIARESD  383 (608)
Q Consensus       361 k~~-------g~~tiaItN~~~S~la~~aD  383 (608)
                      .+.       .-..++||. ++|+|.+.++
T Consensus       135 ~~~~~~~~~~~~~~i~iTd-~~s~L~~~a~  163 (409)
T PRK03868        135 LEHFKLDKLELKNFLVITD-PDSPLEQFAK  163 (409)
T ss_pred             HHHHCCCCCCCCCEEEEEC-CCHHHHHHHH
T ss_conf             9972455330025799936-8416665444


No 105
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.84  E-value=0.00033  Score=48.29  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=81.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r  465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
                      +++|.|-|.+..+|.+.+-||.-+- +++-.+...+.-|+-+.++.++..+|++...+++.| ++..++..+.+|++++.
T Consensus         2 RI~~~GvG~S~~va~~~~~kl~r~G-~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e-~~~~~~~ak~~g~~vI~   79 (128)
T cd05014           2 KVVVTGVGKSGHIARKIAATLSSTG-TPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE-LLNLLPHLKRRGAPIIA   79 (128)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHCC-CCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf             4999942679999999999999579-945754731555411347789999999979999867-99999999863785899


Q ss_pred             EECCCCCCCCCCCCCCEEECCCCCH
Q ss_conf             9565321000134662798688781
Q gi|254780943|r  545 ITDEEGLKRQDFPSIETIVLPSMGE  569 (608)
Q Consensus       545 I~~~~~~~~~~~~~~~~i~iP~~~~  569 (608)
                      ||+..+....+..+ .++.+|..+|
T Consensus        80 iT~~~~S~La~~ad-~~l~~~~~eE  103 (128)
T cd05014          80 ITGNPNSTLAKLSD-VVLDLPVEEE  103 (128)
T ss_pred             EECCCCCHHHHHCC-EEEECCCCCC
T ss_conf             98799996799689-8997799865


No 106
>pfam00342 PGI Phosphoglucose isomerase. Phosphoglucose isomerase catalyses the interconversion of glucose-6-phosphate and fructose-6-phosphate.
Probab=97.72  E-value=0.0004  Score=47.69  Aligned_cols=115  Identities=13%  Similarity=-0.040  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             2356551035203654307999999998625667314-----30420100-12334455505775267881899999999
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRY  359 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~  359 (608)
                      .-+++++|+.+|-|-|+---..+-..++.+..-+..+     ..+.+|.. -...-.++|++|.+|.||.|.||+...+.
T Consensus        92 ~g~~~~~vV~IGIGGS~LGp~~~~~AL~~~~~~~~~~~FvsN~Dp~~~~~~l~~ld~~~TlfiV~SKSf~T~ETl~n~~~  171 (483)
T pfam00342        92 TGKAITDVVNIGIGGSDLGPRMVIEALKHYSENALIVFFVSNVDGTHIAEVLKKLNPETTLINVASKTFTTAETMTNARS  171 (483)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             89823438995656500769999999865336982289956898789999996089202599997788784779999999


Q ss_pred             HHH----CC-------CCEEEEECCCCCCCCCCC--CCCC--CCCCCCCCCCCHHH
Q ss_conf             863----02-------442465117876310002--4101--36742001100078
Q gi|254780943|r  360 MRT----QG-------LTIGSLVNVLESTIARES--DFIF--PIKAGPEIGVASTK  400 (608)
Q Consensus       360 ak~----~g-------~~tiaItN~~~S~la~~a--D~~i--~~~aG~Ei~VasTK  400 (608)
                      +++    ++       -..++||.++........  +..+  +-..|--.||-|.-
T Consensus       172 ~~~wl~~~~~~~~~~~~h~vavT~~~~~a~~~g~~~~~if~~~d~VGGRfSv~SaV  227 (483)
T pfam00342       172 AREWLLKKLGEKSAVAKHFVALSTNAKKVEKFGIDPENMFAFWDWVGGRYSVWSAI  227 (483)
T ss_pred             HHHHHHHHCCCHHHHHCEEEEECCCHHHHHHHCCCHHHEEECCCCCCCCEECCCCC
T ss_conf             99999983498553411489962888999974766641742554568832015755


No 107
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=97.67  E-value=0.0018  Score=43.15  Aligned_cols=91  Identities=9%  Similarity=-0.014  Sum_probs=58.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC-------CCCCEEEEECCCCCCHHHHHHHHHH----H
Q ss_conf             0352036543079999999986256673143042010012334-------4555057752678818999999998----6
Q gi|254780943|r  293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVY-------SSKWASLFISQSGETADTLASLRYM----R  361 (608)
Q Consensus       293 I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~-------~~~tlvI~iSQSGeT~dti~Al~~a----k  361 (608)
                      .+|.|.|..+-+|+-.+.=+..-+++++.....-|.++.+...       .++..+|.++-..+...+..-++..    +
T Consensus       192 piiyg~~~~~~vA~R~k~qlnEnak~~A~~~~~pE~nHneI~~~e~~~~~~~~~~~v~l~d~~d~~r~~~R~~~~~ei~~  271 (328)
T PRK08674        192 PVIYGSGLTRPVAYRWKNQINENAKYPAFYNILPELNHNEIEGYERPQSLLRFVFVVILSDPLDHPRVKERVEITKEILG  271 (328)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             68996885579999999999887457623256631256500022366556775389995585537889999999999984


Q ss_pred             HCCCCEEEEECCCCCCCCCCCC
Q ss_conf             3024424651178763100024
Q gi|254780943|r  362 TQGLTIGSLVNVLESTIARESD  383 (608)
Q Consensus       362 ~~g~~tiaItN~~~S~la~~aD  383 (608)
                      +++..+.-|-..-+|.|.|...
T Consensus       272 ~~~~~v~~i~~~g~s~L~rl~~  293 (328)
T PRK08674        272 ASVIPVVEIDPRGNSPLARLLS  293 (328)
T ss_pred             CCCCCEEEEECCCCCHHHHHHH
T ss_conf             3698569995899888999999


No 108
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=97.66  E-value=0.00018  Score=50.12  Aligned_cols=93  Identities=17%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             56551035203654307999999998625667314-----304201001-233445550577526788189999999986
Q gi|254780943|r  288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMR  361 (608)
Q Consensus       288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak  361 (608)
                      +++++|+++|.|-|+-...+...++.....-+..+     ..+.++... ...-.++|++|.+|.||.|.||+...+.++
T Consensus        18 ~~~~~iv~iGiGGS~LG~k~l~~al~~~~~~~~~i~f~dn~Dp~~~~~~l~~l~~~~TlfiviSKSg~T~ETl~~~~~~~   97 (158)
T cd05015          18 KKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLANARLAR   97 (158)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98886999814333899999999976245489569995799989999999727930149999759998689999999999


Q ss_pred             H----C-----CCCEEEEECCCCCCCCCC
Q ss_conf             3----0-----244246511787631000
Q gi|254780943|r  362 T----Q-----GLTIGSLVNVLESTIARE  381 (608)
Q Consensus       362 ~----~-----g~~tiaItN~~~S~la~~  381 (608)
                      +    +     +...++||. ++|.+.+.
T Consensus        98 ~~l~~~~~~~~~~~~vaIT~-~~s~l~~~  125 (158)
T cd05015          98 EWLEEAGGDDLAKHFVAITD-NGSGLLKK  125 (158)
T ss_pred             HHHHHHCCHHHHHHEEEEEC-CCHHHHHH
T ss_conf             99998320355660789805-96699998


No 109
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=97.59  E-value=0.0018  Score=43.18  Aligned_cols=114  Identities=17%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-----EEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             23565510352036543079999999986256673-----14304201001-2334455505775267881899999999
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKV-----EIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRY  359 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v-----~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~  359 (608)
                      .-+.++.|+.+|-|-|+---..+-..++.+..-+.     +-..+.++... ...-.+.||+|.+|.||.|.||+...+.
T Consensus       126 tgk~i~~VV~IGIGGS~LGp~~~~~AL~~~~~~~~~i~FvsNvD~~~l~~~l~~ldpe~TLfiv~SKSftT~ETl~N~~~  205 (525)
T PRK00179        126 TGKDITDVVNIGIGGSDLGPRAVIEALRPYFDNLLRVHFVSNVDPTYIAEVLKKLDPKTTLFIVISKSGTTTETATNFRI  205 (525)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHH
T ss_conf             89833438996656601769999999986466984179967888689999997289223389996698782889999999


Q ss_pred             HHH----CC-------CCEEEEECCCCCCCCCCCC----CCCCC--CCCCCCCCCHH
Q ss_conf             863----02-------4424651178763100024----10136--74200110007
Q gi|254780943|r  360 MRT----QG-------LTIGSLVNVLESTIARESD----FIFPI--KAGPEIGVAST  399 (608)
Q Consensus       360 ak~----~g-------~~tiaItN~~~S~la~~aD----~~i~~--~aG~Ei~VasT  399 (608)
                      +|+    ++       -..++||.++...+....+    ..+++  ..|--.||-|.
T Consensus       206 a~~wl~~~~g~~~~~~~h~vavT~~~~~a~~~gi~~~~~~iF~~~d~VGGRySvwSa  262 (525)
T PRK00179        206 ARDWLLKKGGKELEAAKHFVAVTDNAKGALKFGIDEEGLETFPMWDWVGGRYSVLSA  262 (525)
T ss_pred             HHHHHHHHCCCHHHHHHHEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCEECCCC
T ss_conf             999999837983436552556428857899826784424077565446773100341


No 110
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=97.56  E-value=0.00064  Score=46.31  Aligned_cols=98  Identities=20%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCCCEE---EECCHHHC-CCCCCCCCCEEEEECCCCCCH
Q ss_conf             235655103520365430799999999862----------5667314---30420100-123344555057752678818
Q gi|254780943|r  286 DFANISGLLVSSCGTSYLAGLVGKFWFERL----------ARLKVEI---DVSSEFRY-RDFVYSSKWASLFISQSGETA  351 (608)
Q Consensus       286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~----------~~i~v~v---~~asEf~y-~~~~~~~~tlvI~iSQSGeT~  351 (608)
                      ..++++.|+.+|.|-||--+.++...+..+          .+..+..   ..+.++.. -...-.++|++|.+|.||.|.
T Consensus        68 ~~k~~~~vV~IGIGGS~LG~~a~~~aL~~~~~n~~~~~~~~~~~i~f~~NvDp~~l~~~l~~ld~~~TlfiViSKSgtT~  147 (454)
T PRK00973         68 WIKNFENVVVLGIGGSALGNLALHTALLPLNYNELSKEERNGYRIFVLDNVDPEKTASILDVIDPKKTLFNVISKSGNTA  147 (454)
T ss_pred             HHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCH
T ss_conf             74789879995435367899999999500112310011168975999808998999999974793307999984897968


Q ss_pred             HHHHHHHHHHH----CC----CCEEEEECCCCCCCCCCCC
Q ss_conf             99999999863----02----4424651178763100024
Q gi|254780943|r  352 DTLASLRYMRT----QG----LTIGSLVNVLESTIARESD  383 (608)
Q Consensus       352 dti~Al~~ak~----~g----~~tiaItN~~~S~la~~aD  383 (608)
                      ||+...+.+|+    .|    -+.+++|+...+.+...++
T Consensus       148 ETl~n~~~~r~~l~~~g~~~~~h~vaiT~~~~~~l~~~a~  187 (454)
T PRK00973        148 ETLANYLIVRGLLEKYGLDPKKHLVFTTDPEKGELKKIAE  187 (454)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCCHHHHHHH
T ss_conf             9999999999999964956765657752675115677788


No 111
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.39  E-value=0.014  Score=36.96  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=77.3

Q ss_pred             HHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf             67798742036-14552136644999999999999742211442324314463788079871899944801468899999
Q gi|254780943|r  454 EKLCCGLAKCQ-TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNI  532 (608)
Q Consensus       454 ~~~a~~~~~~~-~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~  532 (608)
                      .+..+.+.+++ ++++.|-|=+--+|+--|--|-- +..+|-=+++.|-.||-+-+|.++-.++++...+++.|- ...+
T Consensus        32 ~~av~~i~~~~G~vi~~GvGKSg~ia~KiaaTl~S-tGtps~f~hp~ea~HGDlG~i~~~D~~i~~S~SG~t~El-~~~~  109 (321)
T PRK11543         32 VRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKEL-DLII  109 (321)
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCCCEEECCCHHCCCCCCCCCCCCCEEEEEECCCCCHHH-HHHH
T ss_conf             99999998189988999276579999999999865-488654367011155665678789989999589881778-8772


Q ss_pred             HHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCC----CCHHHHHHHHHHH----HHHHHHHHHHHHCCCCC
Q ss_conf             9998279808999565321000134662798688----7815665899999----99999999998387798
Q gi|254780943|r  533 QEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPS----MGEIVSPIVFSLP----IQMIAYCTAVLIGTDVD  596 (608)
Q Consensus       533 ~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~----~~~~l~pl~~~ip----lQllAy~~A~~~G~dpD  596 (608)
                      .-++.+|.++|.|+...+.......+ -++.+|.    ++--++|-..+..    .--||--+...||..++
T Consensus       110 ~~~k~~~~~ii~it~~~~S~Lak~sd-~~l~~~~~~Eacp~~LaPTtStt~~lalGDALAv~lm~~r~F~~~  180 (321)
T PRK11543        110 PRLEDKSIALLAMTGKPTSPLGLAAK-AVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEE  180 (321)
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             78876698689997899997688269-489726656666567775089999999988999999999599987


No 112
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=97.18  E-value=0.0016  Score=43.46  Aligned_cols=108  Identities=19%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH---HHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             356551035203654307999999998625667-31430420---100-1233445550577526788189999999986
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE---FRY-RDFVYSSKWASLFISQSGETADTLASLRYMR  361 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE---f~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak  361 (608)
                      -+.++++++.|||-|--|-.+...-|.+..+.| ..|...++   -+. ......++|++|..|+||.|.+|....++..
T Consensus       452 ~~g~t~vvl~GMGGSSLaPEVia~tf~~~~g~P~L~VLDSTDP~~V~a~~~~lDL~rTlfvVsSKSGsTvEt~s~~~~F~  531 (950)
T PRK09533        452 AQGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTTEPNVFKDYFF  531 (950)
T ss_pred             HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             66987699947873204099999872335799707996598989999998548955469999968988421399999999


Q ss_pred             H----C------CCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCC
Q ss_conf             3----0------24424651178763100024101---367420011
Q gi|254780943|r  362 T----Q------GLTIGSLVNVLESTIARESDFIF---PIKAGPEIG  395 (608)
Q Consensus       362 ~----~------g~~tiaItN~~~S~la~~aD~~i---~~~aG~Ei~  395 (608)
                      +    .      |-+.++ +..|+|+|.+.+..-=   -.++-|.||
T Consensus       532 ~~~~~a~G~~~~g~hfVa-VTDPGSpLek~A~~~g~~~vF~~dP~VG  577 (950)
T PRK09533        532 ARVKEVLGADKAGRHFVA-VTDPGSSLEKVAKEDGFAKIFHGDPSIG  577 (950)
T ss_pred             HHHHHHHCCCCCCCEEEE-EECCCCHHHHHHHHCCCCEEECCCCCCC
T ss_conf             999874165680124899-9799977899999789806751797988


No 113
>PRK13937 phosphoheptose isomerase; Provisional
Probab=96.97  E-value=0.036  Score=34.16  Aligned_cols=142  Identities=20%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HHHHHHCCCC--------------CHHH-
Q ss_conf             9999999767744677987420361455213664499999999999-----9742211442--------------3243-
Q gi|254780943|r  441 KMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----EISYLHAEGY--------------AAGE-  500 (608)
Q Consensus       441 ~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E~syihaeg~--------------~agE-  500 (608)
                      .++...+..+..++.+++.+.+-.++|++|.|-+-+.|.--+--|.     |-..+++-+.              ...+ 
T Consensus        20 ~~e~~~~~I~~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~i   99 (192)
T PRK13937         20 ALESLLAAIAKIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYERV   99 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHH
T ss_conf             99984999999999999999879989999686318889999999964135578985357767882877764277878999


Q ss_pred             CCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf             14463788079871899944801468899999999827980899956532100013466279868878156658999999
Q gi|254780943|r  501 LKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPI  580 (608)
Q Consensus       501 ~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~ipl  580 (608)
                      |..---++..++-.+|++.+.+.. +-++.+++..+.||.+++.++..++-...+.. +..+.+|..+...--=.-++.+
T Consensus       100 f~~ql~~~~~~gDili~iS~SGnS-~Nii~A~~~A~~~g~~~i~ltG~~gg~l~~~~-D~~i~vps~~~~~iee~H~~i~  177 (192)
T PRK13937        100 FARQVEALGRPGDVLIGISTSGNS-PNVLAALEKARELGMTTIGLTGRDGGKMKELC-DLLLIVPSDDTPRIQEIHITIG  177 (192)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CEEEEECCCCCHHHHHHHHHHH
T ss_conf             999999557889889997799999-79999999999879979999888960578839-9899958998589999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780943|r  581 QMIA  584 (608)
Q Consensus       581 QllA  584 (608)
                      |.|.
T Consensus       178 H~lc  181 (192)
T PRK13937        178 HILC  181 (192)
T ss_pred             HHHH
T ss_conf             9999


No 114
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.97  E-value=0.036  Score=34.14  Aligned_cols=142  Identities=16%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHH
Q ss_conf             4467798742036-145521366449999999999997422114423243144637880798718999448014688999
Q gi|254780943|r  452 QIEKLCCGLAKCQ-TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLS  530 (608)
Q Consensus       452 ~i~~~a~~~~~~~-~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s  530 (608)
                      .+.+..+.+.+++ ++++.|-|=+--+|.--|--|-- +..+|--++..|-.||-+-++.++-.++++...+++.|- ..
T Consensus        35 ~f~~av~~i~~~kGkvi~~GvGKSg~ia~KiaaTl~S-tGtps~flhp~ea~HGDlG~i~~~D~~i~~S~SG~t~El-~~  112 (326)
T PRK10892         35 DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEI-LA  112 (326)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHC-CCCCCEECCHHHCCCCCCCCCCCCCEEEEEECCCCCHHH-HH
T ss_conf             8999999998289988998386579999999999865-487515457434064655677789989999589875778-76


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC----CHHHHHHHHHHH----HHHHHHHHHHHHCCCCC
Q ss_conf             9999982798089995653210001346627986887----815665899999----99999999998387798
Q gi|254780943|r  531 NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM----GEIVSPIVFSLP----IQMIAYCTAVLIGTDVD  596 (608)
Q Consensus       531 ~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~----~~~l~pl~~~ip----lQllAy~~A~~~G~dpD  596 (608)
                      .+.-++.+|.++|.|+...+.......+ -++.+|..    +--++|-..+..    .--||--+...||..++
T Consensus       113 ll~~~~~~~~~iI~it~~~~S~l~~~sd-~~l~~~~~~Eacp~~laPTtStt~~lalgDala~~lm~~rgF~~~  185 (326)
T PRK10892        113 LIPVLKRLHVPLICITGRPESSMARAAD-VHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAE  185 (326)
T ss_pred             HHHHHHHCCCCEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             4178776698589995699996688088-789657874466567775189999999998999999998499986


No 115
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=96.96  E-value=0.036  Score=34.10  Aligned_cols=103  Identities=21%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             03614552136644999999999999742211442324314463788079871899944801468899999999827980
Q gi|254780943|r  462 KCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGR  541 (608)
Q Consensus       462 ~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~  541 (608)
                      ...++++.|-|=+==+++--|-.|.-+- .+|-=...+|--||-.-+|.++-.+++|...+++.+ ..+.+.-.|.+|++
T Consensus        38 ~~gkv~V~G~GkSG~Igkk~Aa~L~s~G-~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~e-l~~~~~~aK~~g~~  115 (202)
T COG0794          38 CKGKVFVTGVGKSGLIGKKFAARLASTG-TPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKE-LLNLAPKAKRLGAK  115 (202)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHCCC-CCEEEECCCHHCCCCCCCCCCCCEEEEEECCCCHHH-HHHHHHHHHHCCCC
T ss_conf             4884899868726899999999997359-955996673010377567898889999808971779-99999999975994


Q ss_pred             EEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf             89995653210001346627986887
Q gi|254780943|r  542 VIFITDEEGLKRQDFPSIETIVLPSM  567 (608)
Q Consensus       542 vi~I~~~~~~~~~~~~~~~~i~iP~~  567 (608)
                      ++.||..++.......+ -++.+|..
T Consensus       116 liaiT~~~~SsLak~aD-vvl~ip~~  140 (202)
T COG0794         116 LIAITSNPDSSLAKAAD-VVLVIPVK  140 (202)
T ss_pred             EEEEECCCCCHHHHHCC-EEEECCCC
T ss_conf             89995899986787468-69973674


No 116
>PRK02947 hypothetical protein; Provisional
Probab=96.74  E-value=0.054  Score=32.92  Aligned_cols=155  Identities=18%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH----------
Q ss_conf             999999976774467----798742036145521366449999999999997422114423243144637----------
Q gi|254780943|r  441 KMFDVLQNIYSQIEK----LCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI----------  506 (608)
Q Consensus       441 ~i~~~l~~~~~~i~~----~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~----------  506 (608)
                      .++++.++..+.+++    +++.+.+-..+++-|.|-+.-+|+|..-.=--+..++.---+.--+.+||.          
T Consensus        15 ll~~i~~~q~~~I~~Aa~~ia~si~~gg~i~~fGtGHS~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g   94 (247)
T PRK02947         15 LLERVRETQADAIKQAADLVADSIANGGRIYVFGTGHSHMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEG   94 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf             99999999999999999999999975997999888516489998741147643313003411025478666531222550


Q ss_pred             ---HH-----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----------CC----------CC
Q ss_conf             ---88-----079871899944801468899999999827980899956532100-----------01----------34
Q gi|254780943|r  507 ---AL-----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKR-----------QD----------FP  557 (608)
Q Consensus       507 ---al-----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~-----------~~----------~~  557 (608)
                         .+     +.++-.+|++...+. ..-.+-...+.|+||.+||+||+......           .+          -.
T Consensus        95 ~a~~il~~~~i~~~Dvlii~SnSG~-N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN~~p~  173 (247)
T PRK02947         95 YAKLILDRYPIRPGDVLIIVSNSGR-NAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDNGAPK  173 (247)
T ss_pred             HHHHHHHHCCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEECCCCC
T ss_conf             9999998679999988999967877-768999999999869969999667881678998976671156366786579998


Q ss_pred             CCCEEECCCCCH---HHHHHHHHHHHHHHHHHHH---HHHCCCCC
Q ss_conf             662798688781---5665899999999999999---98387798
Q gi|254780943|r  558 SIETIVLPSMGE---IVSPIVFSLPIQMIAYCTA---VLIGTDVD  596 (608)
Q Consensus       558 ~~~~i~iP~~~~---~l~pl~~~iplQllAy~~A---~~~G~dpD  596 (608)
                      ++..+.+|..+.   -.+.+..+..+|.+-..++   ..+|.+|.
T Consensus       174 GDA~l~i~g~~~kvgp~STi~g~~i~n~i~~e~~~~L~~~G~~pP  218 (247)
T PRK02947        174 GDAVLEIEGLEAKVGPTSTVVGVAILNAIFAEAAEELVERGIDPP  218 (247)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             765898789777757577899999999999999999997799998


No 117
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=96.67  E-value=0.06  Score=32.58  Aligned_cols=119  Identities=22%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHH--------------------CCCCCHHH
Q ss_conf             6774467798742036145521366449999999999997422114423243--------------------14463788
Q gi|254780943|r  449 IYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGE--------------------LKHGPIAL  508 (608)
Q Consensus       449 ~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE--------------------~kHGP~al  508 (608)
                      .+..++.+.+.+.+..++|+.|.|-+.++|.--|--|.--....-.++++--                    |..---++
T Consensus        19 i~~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~~~if~~ql~~~   98 (177)
T cd05006          19 IEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEAL   98 (177)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999999987998999968740888999999873576668887017976787788888756532999999999974


Q ss_pred             HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCH
Q ss_conf             0798718999448014688999999998279808999565321000134662798688781
Q gi|254780943|r  509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGE  569 (608)
Q Consensus       509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~  569 (608)
                      ..++-.+|+|...+... -++..++..+.||.+++.+|..++....+.. +..+.+|..+.
T Consensus        99 ~~~gDili~iS~sG~s~-nii~a~~~ak~~g~~~i~ltg~~gg~l~~~~-D~~i~vps~~~  157 (177)
T cd05006          99 GQPGDVLIGISTSGNSP-NVLKALEAAKERGMKTIALTGRDGGKLLELA-DIEIHVPSDDT  157 (177)
T ss_pred             CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEECCCCCHHHHHC-CEEEEECCCCC
T ss_conf             46898899981899998-9999999999879989999878986167619-98999699985


No 118
>pfam10432 bact-PGI_C Bacterial phospho-glucose isomerase C-terminal region. This is the C-terminal half of a bacterial phospho-glucose isomerase EC:5.3.1.9 protein which is similar to eukaryote homologues to the extent that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This domain contributes a good proportion of the active catalytic site residues. This PGI uses the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate. It is associated with family SIS, pfam01380.
Probab=96.25  E-value=0.11  Score=30.88  Aligned_cols=128  Identities=19%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCC-----CCEEEEEECCCHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463788079-----8718999448014
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITE-----GTFVIAIAPYDRF  524 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~-----~~~vi~i~~~~~~  524 (608)
                      +...+++|.++.+.-.++ -|.+...++|.=-.--|-|-+-++|-.-.--|+-|--+..-+.     +..++++-.+++ 
T Consensus         5 ~N~Ak~LA~~l~~~iPvi-y~~~~~~~~A~R~k~qlnENaK~~a~~~~lPE~nHNeivg~~~~~~~~~~~~v~l~d~~d-   82 (154)
T pfam10432         5 KNPAKRLASELAGYIPVI-YGSPLYRAAAYRFKNQLNENAKYPAFSGELPEANHNEIVGLEGPFSLLRLRVVLLRDRED-   82 (154)
T ss_pred             CCHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCC-
T ss_conf             179999999981888889-968853799999999999973887565789852210010205755567727999816985-


Q ss_pred             HHHH---HHHHHHH-HHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf             6889---9999999-8279808999565321000134662798688781566589999-9999999999983877988
Q gi|254780943|r  525 FQKT---LSNIQEI-VTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSL-PIQMIAYCTAVLIGTDVDQ  597 (608)
Q Consensus       525 ~~k~---~s~~~Ei-~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~i-plQllAy~~A~~~G~dpD~  597 (608)
                      .+++   ..-.+|+ +.|+..++.|..+++                  ..+.-+++.+ ..-+.|||+|+.+|+||..
T Consensus        83 ~~~~~~R~~~~~~i~~~~~~~v~~i~~~g~------------------s~l~rl~~li~lgD~~S~yLA~~~gvDP~~  142 (154)
T pfam10432        83 DPRTKRRADITEEIAEDRGVNVIEIEAEGG------------------SPLERLASLIYLGDFASVYLALIRGVDPEP  142 (154)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCC------------------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             688999999999999866986699946999------------------899999999999999999999981979641


No 119
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=96.15  E-value=0.12  Score=30.54  Aligned_cols=120  Identities=22%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH-----HHHHHHHCCCC--------------CHHH-CCCCCHH
Q ss_conf             76774467798742036145521366449999999999-----99742211442--------------3243-1446378
Q gi|254780943|r  448 NIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKI-----KEISYLHAEGY--------------AAGE-LKHGPIA  507 (608)
Q Consensus       448 ~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKl-----kE~syihaeg~--------------~agE-~kHGP~a  507 (608)
                      ..+...+.+.+.+.+-..+++.|.|-+.+.|.--|--|     +|--.++|-+.              ...+ |..---+
T Consensus        26 ~I~~aa~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~~~vF~rQl~a  105 (196)
T PRK10886         26 AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRA  105 (196)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999999999998799799986847488999999999646556898840566326705654311667799999999998


Q ss_pred             HHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCEEECCCCC
Q ss_conf             80798718999448014688999999998279808999565321000134--66279868878
Q gi|254780943|r  508 LITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFP--SIETIVLPSMG  568 (608)
Q Consensus       508 li~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~--~~~~i~iP~~~  568 (608)
                      +-.++-.+|++.+.+... -.+.+++..+.||-++|.++..++-...+..  .+-.|.+|..+
T Consensus       106 lg~~gDiLi~iStSGnS~-Nii~Ai~~A~~~g~~~i~ltG~~gg~l~~l~~~~Di~I~vps~~  167 (196)
T PRK10886        106 LGHAGDVLLAISTRGNSR-DIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR  167 (196)
T ss_pred             HCCCCCEEEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEECCCCC
T ss_conf             567999899994899998-99999999998899899997688623665157679899869998


No 120
>PRK13936 phosphoheptose isomerase; Provisional
Probab=96.15  E-value=0.12  Score=30.54  Aligned_cols=119  Identities=23%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HHHHHHCCC--------------CCHHH-CCCCCHHH
Q ss_conf             67744677987420361455213664499999999999-----974221144--------------23243-14463788
Q gi|254780943|r  449 IYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----EISYLHAEG--------------YAAGE-LKHGPIAL  508 (608)
Q Consensus       449 ~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E~syihaeg--------------~~agE-~kHGP~al  508 (608)
                      .+...+.+++.+.+-..+|+.|.|-+.+.|.--|--|.     |-..++|-+              |...+ |..---++
T Consensus        29 i~~aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~g~~~vf~rQl~a~  108 (197)
T PRK13936         29 IAQAVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDYSYNEVFSKQVRAL  108 (197)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999987998999968789999999999986654127888755764367401101027878999999999983


Q ss_pred             HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCEEECCCCC
Q ss_conf             0798718999448014688999999998279808999565321000134--66279868878
Q gi|254780943|r  509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFP--SIETIVLPSMG  568 (608)
Q Consensus       509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~--~~~~i~iP~~~  568 (608)
                      ..++-.+|+|.+.+.. +-.+..++..+.||.+++.++..++-...+..  .+-.|.+|...
T Consensus       109 ~~~gDili~iS~SGnS-~Nii~A~~~A~~~g~~~i~ltG~dgg~l~~l~~~~Di~i~vps~~  169 (197)
T PRK13936        109 GQPGDVLLAISTSGNS-ANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPHDR  169 (197)
T ss_pred             CCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEECCCCC
T ss_conf             8999989999699999-899999999998599599998168535675256689899819997


No 121
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=95.69  E-value=0.18  Score=29.22  Aligned_cols=121  Identities=19%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----H-----------HHHHHC--CCCCHHH-CCCCCH
Q ss_conf             99767744677987420361455213664499999999999-----9-----------742211--4423243-144637
Q gi|254780943|r  446 LQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----E-----------ISYLHA--EGYAAGE-LKHGPI  506 (608)
Q Consensus       446 l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E-----------~syiha--eg~~agE-~kHGP~  506 (608)
                      ++..+..++.+.+.+.+...+|+.|.|-+.+.|.--|--|.     |           .+.+-|  .-|...+ |.+---
T Consensus        27 ~~~I~~aa~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~Lsd~s~lTa~~ND~g~e~iF~~Ql~  106 (192)
T PRK00414         27 IHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVE  106 (192)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999999987997999968588999999999874631446665432532767775010076648899999999


Q ss_pred             HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf             88079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r  507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG  568 (608)
Q Consensus       507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~  568 (608)
                      ++..++-.+|+|.+.+.. +-++.+++..+.||.+++.++..++-...... +-.+.+|..+
T Consensus       107 ~~~~~gDvLi~iS~SGnS-~Nii~A~~~Ak~~g~~~i~ltG~~GG~l~~l~-D~~i~Vps~~  166 (192)
T PRK00414        107 AVGREGDVLLGISTSGNS-GNIIKAIEAAREKGMKVITLTGKDGGKMAGLA-DIEIRVPHFG  166 (192)
T ss_pred             HHCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CEEEEECCCC
T ss_conf             817899999997689999-99999999999889989999779961477608-9799918999


No 122
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=95.46  E-value=0.22  Score=28.68  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCC--CEEEECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             51035203654307999999998625667--31430420100-1233445550577526788189999999986302442
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLK--VEIDVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTI  367 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~--v~v~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~t  367 (608)
                      ++|+|||+...  +....+-+-++ ++.+  +.-+.+.-|.. .-....+.+++|.+-..-+.    .|++.|+..|.++
T Consensus        68 ~~ILfVgtk~q--a~~~v~~~A~~-~g~~yv~~RWlgG~LTN~~l~~~~ePdlliV~Dp~~e~----~AV~EA~~l~IPv  140 (204)
T PRK04020         68 EKILVVSSRQY--GQKPVKKFAEV-VGAKAITGRFIPGTLTNPSLKGYIEPDVLVVTDPRGDA----QAVKEAIEIGIPV  140 (204)
T ss_pred             CEEEEEECCHH--HHHHHHHHHHH-HCCEEECCCCCCCCCCCHHHCCCCCCCEEEEECCCCCH----HHHHHHHHCCCCE
T ss_conf             84999979899--99999999999-69906826227986568313025689989997886304----8999998769998


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             4651178763100024101367420011000788899999999999997762120015776322
Q gi|254780943|r  368 GSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQEREL  431 (608)
Q Consensus       368 iaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~  431 (608)
                      +||+++-..  -...|+.||.|-   -|      --+--+.+.+||-...+.+|.++.++..++
T Consensus       141 IaivDTn~d--p~~Vdy~IP~ND---ds------~~SI~Li~~lLa~ail~~kg~~~~~~~~~v  193 (204)
T PRK04020        141 VALCDTDNL--TSNVDLVIPTNN---KG------RKALALIYWLLAREILRERGEIKPDEDLPV  193 (204)
T ss_pred             EEEECCCCC--CHHCCEEEECCC---CC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             998279989--111573651688---30------738999999999999997397776668878


No 123
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857   Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined .   These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=95.26  E-value=0.19  Score=29.13  Aligned_cols=57  Identities=26%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCEEECCC
Q ss_conf             0798718999448014688999999998279808999565321-000134662798688
Q gi|254780943|r  509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGL-KRQDFPSIETIVLPS  566 (608)
Q Consensus       509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~-~~~~~~~~~~i~iP~  566 (608)
                      ++.++.+|++.=.+.|.| |+++.++...|++++++||+.+-. +..+..+++++.+|.
T Consensus        70 v~~~~~lIAvSYSGNT~E-Tl~~~e~A~~~~~~~~aITSGG~L~e~A~e~g~~~i~iP~  127 (338)
T TIGR02128        70 VDGKTLLIAVSYSGNTEE-TLSAVEEAKKKGAKVIAITSGGKLEEMAKEEGLDVIKIPK  127 (338)
T ss_pred             CCCCEEEEEEECCCCHHH-HHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCEEEECC
T ss_conf             898517999861786689-9999999986579559994485388630114875688288


No 124
>PRK13938 phosphoheptose isomerase; Provisional
Probab=95.17  E-value=0.27  Score=28.06  Aligned_cols=120  Identities=20%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH-----HHHHHCCC--------------CCHHH-CCCCCH
Q ss_conf             97677446779874203614552136644999999999999-----74221144--------------23243-144637
Q gi|254780943|r  447 QNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKE-----ISYLHAEG--------------YAAGE-LKHGPI  506 (608)
Q Consensus       447 ~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE-----~syihaeg--------------~~agE-~kHGP~  506 (608)
                      +..+.-.+.+.+-+.+-..+|+.|.|-+.+.|.--|--|.-     =.-++|.+              |...+ |.+---
T Consensus        29 ~~i~~~~~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~vF~rQl~  108 (196)
T PRK13938         29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALE  108 (196)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999999999879989999686889999999999863335789984745447880788887624789999999999


Q ss_pred             HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf             88079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r  507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG  568 (608)
Q Consensus       507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~  568 (608)
                      ++..++-.+|.|.+.+... -++.+++..+.+|.+++.++..++-...+..+ ..+.+|..+
T Consensus       109 al~~~gDvLi~iStSGnS~-NIi~A~~~Ak~~g~~~i~ltG~~gg~l~~l~D-~~i~vps~~  168 (196)
T PRK13938        109 GSARPGDTLFAISTSGNSM-SVLRAAKTARELGVTVVAMTGESGGQLAEFAD-FLINVPSRD  168 (196)
T ss_pred             HCCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC-EEEEECCCC
T ss_conf             7168999899977999999-99999999998799899998899631775489-899938998


No 125
>KOG1268 consensus
Probab=94.96  E-value=0.31  Score=27.66  Aligned_cols=151  Identities=15%  Similarity=0.235  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHC-
Q ss_conf             79998759999999997---6------7744677987420361455213664499999999999974221144232431-
Q gi|254780943|r  432 IRSLVEIPRKMFDVLQN---I------YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGEL-  501 (608)
Q Consensus       432 ~~~L~~lp~~i~~~l~~---~------~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~-  501 (608)
                      .+++-.-|+.+.....-   .      -.-.+..-.....+++++++|.|.+|-.|+-.---|.|++-++.--=-|.+| 
T Consensus       315 qKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDfl  394 (670)
T KOG1268         315 QKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASDFL  394 (670)
T ss_pred             HHHHHHCCHHHHHHCCCEECCCCCEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
T ss_conf             66776174577775056131466446615764411455311564799844408888777899999856975622144567


Q ss_pred             -CCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--CCCCCEEECCC-----CCHHHHH
Q ss_conf             -446378807987189994480146889999999982798089995653210001--34662798688-----7815665
Q gi|254780943|r  502 -KHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQD--FPSIETIVLPS-----MGEIVSP  573 (608)
Q Consensus       502 -kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~--~~~~~~i~iP~-----~~~~l~p  573 (608)
                       |-+|+   =.+-.+||+...+++.+.+ -+++=.+.|||-++.|++.-+.....  ..+++.=.=|+     +..+.+-
T Consensus       395 DR~~pi---fRdDvc~FvSqSGETaDtl-laL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpEigvAsTKaYTSQ  470 (670)
T KOG1268         395 DRNTPI---FRDDVCFFVSQSGETADTL-LALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQ  470 (670)
T ss_pred             HCCCCC---EECCEEEEEECCCCHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEECHHHHHH
T ss_conf             507982---0055799992687628899-999988863966998752557620023344223057874453311477899


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999
Q gi|254780943|r  574 IVFSLPIQMIAYCTAV  589 (608)
Q Consensus       574 l~~~iplQllAy~~A~  589 (608)
                      +   |.+-+||.+++.
T Consensus       471 ~---i~lvm~aL~~s~  483 (670)
T KOG1268         471 Y---IALVMFALWMSE  483 (670)
T ss_pred             H---HHHHHHHHHHCC
T ss_conf             9---999999999641


No 126
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=94.93  E-value=0.19  Score=29.06  Aligned_cols=61  Identities=25%  Similarity=0.340  Sum_probs=45.8

Q ss_pred             HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCEEECCCCC
Q ss_conf             880798718999448014688999999998279808999565321-00013466279868878
Q gi|254780943|r  507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGL-KRQDFPSIETIVLPSMG  568 (608)
Q Consensus       507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~-~~~~~~~~~~i~iP~~~  568 (608)
                      .-+++++.||++.-.+++.| +++.+++.+.||+++++||+.+.. +..+......+.+|...
T Consensus        39 ~~v~~~~lvi~~S~SGnTeE-tl~~~~~a~~~ga~vi~itsGG~L~~~a~~~~~p~v~iP~g~  100 (119)
T cd05017          39 AFVDRKTLVIAVSYSGNTEE-TLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKGL  100 (119)
T ss_pred             CCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEECCCCC
T ss_conf             75587878999928979689-999999999859909998499559999988799989879999


No 127
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.83  E-value=0.32  Score=27.49  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             999999986302442465117876310-0024101367420011000788899999999999997762120015776322
Q gi|254780943|r  353 TLASLRYMRTQGLTIGSLVNVLESTIA-RESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQEREL  431 (608)
Q Consensus       353 ti~Al~~ak~~g~~tiaItN~~~S~la-~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~  431 (608)
                      ....++.+|++|+++|.|--.. |..| +.+|..|++.-|-+.+.           +|.|+-..+  ..+..+.+-.+++
T Consensus       195 ~~~~l~~a~~~GaklIvVDPr~-t~tA~~~AD~wl~irPGTD~AL-----------~lam~~vii--~e~l~D~~Fv~~~  260 (609)
T cd02751         195 SYYYLKQAKDAGVRFICIDPRY-TDTAAVLAAEWIPIRPGTDVAL-----------MLAMAHTLI--TEDLHDQAFLARY  260 (609)
T ss_pred             HHHHHHHHHHCCCEEEEECCCC-CCHHHHHCCEEECCCCCCCHHH-----------HHHHHHHHH--HCCCCCHHHHHHH
T ss_conf             7899999998889799989988-8255661388857689967999-----------999999999--8788317888763


Q ss_pred             HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             79998--------------75999999999767744677987420361455213664
Q gi|254780943|r  432 IRSLV--------------EIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSS  474 (608)
Q Consensus       432 ~~~L~--------------~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~  474 (608)
                      ...+.              ..|+..+++-.-..+.++++|+.+...+.++..|.|.+
T Consensus       261 t~Gfde~~~~v~g~~Dg~~~TPE~aa~itGVpa~~I~~~A~~~a~~~~~i~~g~g~~  317 (609)
T cd02751         261 TVGFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIASKRTMIAQGWGLQ  317 (609)
T ss_pred             CCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             546699987642664467689999987778899999999999974687899777434


No 128
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR)  is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=94.67  E-value=0.35  Score=27.25  Aligned_cols=121  Identities=22%  Similarity=0.345  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC--------------CCHHHHHH---HHHHHHHHHHHH-CCCCC
Q ss_conf             8759999999997677446779874203614552136--------------64499999---999999974221-14423
Q gi|254780943|r  436 VEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRG--------------SSYPLALE---GALKIKEISYLH-AEGYA  497 (608)
Q Consensus       436 ~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G--------------~~y~~A~E---gALKlkE~syih-aeg~~  497 (608)
                      +.+|-+++.++++...-++-+.+.|.+--+.+++|.|              |.|++--|   |=+==-|-+-.| +||.+
T Consensus        30 ~~v~~Av~~~lpdi~~Avd~i~~~~~~GGRLiY~GAGTSGRLGvLDAvECPPTy~v~~~lV~Gi~AGG~~A~~~a~EG~E  109 (291)
T TIGR00274        30 KLVPLAVEEVLPDIAAAVDVIVEAFQKGGRLIYIGAGTSGRLGVLDAVECPPTYGVSPELVVGIIAGGEEAILHAVEGAE  109 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCC
T ss_conf             43799998742889999999999986798089876875331022356468489898821014203001688611336744


Q ss_pred             HHHCC-CCCHHH----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             24314-463788----079871899944801468899999999827980899956532100013466
Q gi|254780943|r  498 AGELK-HGPIAL----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSI  559 (608)
Q Consensus       498 agE~k-HGP~al----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~  559 (608)
                        +-. -|--+|    +.++-.||-|+-.++ .+-....++=-|++|+++|.|+..+........+.
T Consensus       110 --D~~~~G~~dL~~i~lt~~DvvvgIaASGr-TPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~~Ad~  173 (291)
T TIGR00274       110 --DSEEAGANDLKNIRLTKNDVVVGIAASGR-TPYVIGALEYARKLGAKTIAIACNPESAVSKQADV  173 (291)
T ss_pred             --CCHHHHHHHHHHCCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             --23588899987322563476888817897-57899999999970782577741774223121443


No 129
>LOAD_sis consensus
Probab=94.58  E-value=0.28  Score=27.95  Aligned_cols=86  Identities=21%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             3614552136644999999999999742-211442324314463788079871899944801468899999999827980
Q gi|254780943|r  463 CQTLLYVGRGSSYPLALEGALKIKEISY-LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGR  541 (608)
Q Consensus       463 ~~~~~~lG~G~~y~~A~EgALKlkE~sy-ihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~  541 (608)
                      .++++++|.|-+.-.|.-.+-++.|... +........+|.+-..... ++..++++...+++.+- +.+++..+.+|++
T Consensus         2 ~~rii~ig~ggSs~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~SG~t~e~-~~a~~~~~~~~~~   79 (90)
T LOAD_sis          2 AGRVVFIGAGGSALGAQLLAKALAERGAVIFVSVNVADEFLARVLALL-DDDLLVIISKSGGTTET-LLAALLAKKRGAK   79 (90)
T ss_pred             CCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCEEEEECCCCCCHHH-HHHHHHHHHCCCE
T ss_conf             842999997019999999999999997499769974531106688789-78889998789888999-9999999988993


Q ss_pred             EEEEECCCC
Q ss_conf             899956532
Q gi|254780943|r  542 VIFITDEEG  550 (608)
Q Consensus       542 vi~I~~~~~  550 (608)
                      ++.+++..+
T Consensus        80 ~i~it~~~~   88 (90)
T LOAD_sis         80 TIAITNVAG   88 (90)
T ss_pred             EEEEECCCC
T ss_conf             999968888


No 130
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=94.42  E-value=0.38  Score=27.01  Aligned_cols=123  Identities=10%  Similarity=0.081  Sum_probs=69.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--EEEECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             565510352036543079999999986256673--1430420100-1233445550577526788189999999986302
Q gi|254780943|r  288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKV--EIDVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRTQG  364 (608)
Q Consensus       288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v--~v~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g  364 (608)
                      .+...|+|||+-.  ++-...+-+- +.+|.+.  .-+.+.-|.. ....+.+..++|.+-.--+.    .|++.|...|
T Consensus        69 ~~~~~Il~V~tr~--~~q~aV~kfA-~~tG~~~i~~Rw~pGtlTN~i~~~f~eP~lliV~DP~~d~----~AV~EA~~~n  141 (242)
T PTZ00254         69 ENPADVVVVSSRP--YGQRAILKFS-QYTGASFIAGRFTPGTFTNQIQKKFQEPRLLIVTDPRTDH----QAIREASYVN  141 (242)
T ss_pred             CCCCCEEEEECCH--HHHHHHHHHH-HHHCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH----HHHHHHHHCC
T ss_conf             4799779998388--9879999999-9979942405127866468766524688889996675440----8999999859


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             4424651178763100024101367420011000788899999999999997762120015776
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQE  428 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~  428 (608)
                      .+|+|+|++-. ++ +..|+.||.|-         |+--+--+...|||-+.-+.||.++.+..
T Consensus       142 IPvIal~DTds-~p-~~VD~~IP~Nd---------ds~~SI~Li~~lLArevl~~rG~i~r~~~  194 (242)
T PTZ00254        142 IPVIALCDTDA-PL-EYVDIAIPCNN---------RGKKSIAMMYWLLAREVLRLRGTIPRSEP  194 (242)
T ss_pred             CCEEEEECCCC-CC-CCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             98898616999-95-32656765688---------30768999999999999983688788898


No 131
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.23  E-value=0.45  Score=26.52  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             7446779874203614552136
Q gi|254780943|r  451 SQIEKLCCGLAKCQTLLYVGRG  472 (608)
Q Consensus       451 ~~i~~~a~~~~~~~~~~~lG~G  472 (608)
                      +.|+++|+.+...+..+..|.|
T Consensus       296 ~~I~~lA~~~a~~~~~i~~g~g  317 (609)
T cd02769         296 ETIRELARRFASKRTMIMAGWS  317 (609)
T ss_pred             HHHHHHHHHHHHCCCEEEECCC
T ss_conf             9999999999836975898775


No 132
>TIGR01012 Sa_S2_E_A ribosomal protein S2; InterPro: IPR005707   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the ribosomal protein of the eukaryotic cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=94.00  E-value=0.087  Score=31.46  Aligned_cols=123  Identities=16%  Similarity=0.228  Sum_probs=69.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE--EECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6551035203654307999999998625667314--30420100123-34455505775267881899999999863024
Q gi|254780943|r  289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI--DVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGL  365 (608)
Q Consensus       289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v--~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~  365 (608)
                      +...|.++..=   .-|+-+=.-|-+.+|...-+  +.|.-|..-.. ...+.. ||.|+-=--=   -.|++.|-+-|.
T Consensus        61 NP~~I~vvS~R---~Yg~~pV~~f~~~tG~~~I~GRf~PGT~TNp~~~~f~EP~-vv~vtDPR~D---~Qa~~EA~~vgi  133 (197)
T TIGR01012        61 NPEDILVVSAR---IYGQKPVLKFAEVTGARAIAGRFIPGTFTNPALKEFREPE-VVVVTDPRAD---HQALKEASEVGI  133 (197)
T ss_pred             CCCCEEEEECC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCE-EEEECCCCCC---CCHHHHHHCCCC
T ss_conf             82111344015---2224689999876088745665437776402331367873-7997588766---212120001589


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             4246511787631000241013674200110007888999999999999977621200157763
Q gi|254780943|r  366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQER  429 (608)
Q Consensus       366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~  429 (608)
                      +++|+|++.+  ..+..|.+||+|-         |+=-|=-++-+|||-+..+.||.++.++.-
T Consensus       134 P~vALcDTd~--~~~~vDl~IP~NN---------KG~~s~al~yWlLaRe~L~~RG~i~~~~~~  186 (197)
T TIGR01012       134 PIVALCDTDN--SLRYVDLVIPTNN---------KGRRSLALIYWLLAREILRMRGVISADEDL  186 (197)
T ss_pred             CEEEEECCCC--CCCCCCEEECCCC---------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             6689875887--5000240107986---------136899999999999999753740479874


No 133
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=93.92  E-value=0.51  Score=26.12  Aligned_cols=156  Identities=22%  Similarity=0.277  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-------H-HHHHHCCCCCH-------H
Q ss_conf             9875999999999767744677987420361455213664499999999999-------9-74221144232-------4
Q gi|254780943|r  435 LVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-------E-ISYLHAEGYAA-------G  499 (608)
Q Consensus       435 L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-------E-~syihaeg~~a-------g  499 (608)
                      =+.++..+.+.+++....++.+++.+..-.++|++|.|.+=-++.--|.-+-       | +.++.|-|..+       .
T Consensus        30 d~~v~~Av~~~lp~I~~~v~~~~~~l~~gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~~liAGG~~Al~~~~Ega  109 (273)
T PRK05441         30 DKKVALAVEKALPQIAAAVDAIAAALRSGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGA  109 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCC
T ss_conf             89999999998789999999999999759829997476158899988986487668998991446768899986361102


Q ss_pred             --HCCCCCHHH----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC-HHHH
Q ss_conf             --314463788----079871899944801468899999999827980899956532100013466279868878-1566
Q gi|254780943|r  500 --ELKHGPIAL----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG-EIVS  572 (608)
Q Consensus       500 --E~kHGP~al----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~-~~l~  572 (608)
                        ...-|-..+    +.++-.||.|+-.++ .+-+...++..+.+|+.++.|++..+.......+. .|. |.++ |.++
T Consensus       110 ED~~~~g~~dl~~~~~~~~DvvIgIaASG~-TPyv~~al~~A~~~ga~ti~I~~n~~s~l~~~ad~-~I~-~~tGpEvit  186 (273)
T PRK05441        110 EDDAELGAADLKAINLTAKDVVVGIAASGR-TPYVIGALEYAREIGALTIAISCNPGSPISKEADI-AIE-VVVGPEVLT  186 (273)
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCE-EEE-ECCCCCCCC
T ss_conf             468889999999828996578999936889-71899999999986995799853896200010681-375-178843002


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHCC
Q ss_conf             5-------89999999999999998387
Q gi|254780943|r  573 P-------IVFSLPIQMIAYCTAVLIGT  593 (608)
Q Consensus       573 p-------l~~~iplQllAy~~A~~~G~  593 (608)
                      .       -..=+.|-+++--+.+.+|.
T Consensus       187 GSTRmKAGTAqK~iLNmiST~~mi~lGk  214 (273)
T PRK05441        187 GSTRMKAGTAQKLVLNMISTGVMIKLGK  214 (273)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             6665452259999999998999998086


No 134
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=93.83  E-value=0.53  Score=26.00  Aligned_cols=124  Identities=15%  Similarity=0.019  Sum_probs=69.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHC---CCCEEEEEECCCHHHHHHH
Q ss_conf             4677987420361455213664499999999999974221144232431446378807---9871899944801468899
Q gi|254780943|r  453 IEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALIT---EGTFVIAIAPYDRFFQKTL  529 (608)
Q Consensus       453 i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~---~~~~vi~i~~~~~~~~k~~  529 (608)
                      .+++|..+.+.--+ +.|.+...++|.=-.--|-|-+-++|-.-..-|+-|.-+.--+   ...+++++..++.-..++.
T Consensus         3 Ak~LA~~l~~~iPv-Iy~~~~~~~~A~R~k~qlnENaK~~a~~~~lPE~nHNeivgw~~~~~~~~~~~~~~d~~d~~r~~   81 (132)
T cd05637           3 AKELALELAGRIPI-IYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIK   81 (132)
T ss_pred             HHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf             89999997089878-99786328999999999999718973347786200345531356655585799964888337899


Q ss_pred             H--HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf             9--9999982798089995653210001346627986887815665899999-9999999999838779
Q gi|254780943|r  530 S--NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLP-IQMIAYCTAVLIGTDV  595 (608)
Q Consensus       530 s--~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~ip-lQllAy~~A~~~G~dp  595 (608)
                      -  .+.....++..+..+..                  +-+..+.-+++.|- .-+.|||+|+.+|+||
T Consensus        82 ~r~~~~~~~~~~~~~~~v~~------------------~g~s~l~rl~~li~l~D~~S~yLA~~~gvDP  132 (132)
T cd05637          82 LRIVITKFEEGGIPYEVIES------------------VGASPLARLLSLIYLGDLASVYLALLRGVDP  132 (132)
T ss_pred             HHHHHHHHHHCCCCEEEEEC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999886415986799968------------------9998999999999999999999999808898


No 135
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=93.42  E-value=0.61  Score=25.56  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999998630244246511787631000241013674200110007888999999999999977621200157763227
Q gi|254780943|r  353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI  432 (608)
Q Consensus       353 ti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~  432 (608)
                      ....++.+|++|++++.| +-..|..++.+|..+++..|-+.++           ++.|+-..+  ..+..+.+-..++.
T Consensus       175 ~~~~~~~a~~~Gaklivv-dPr~t~ta~~Ad~~l~irPGTD~al-----------~la~~~~ii--~e~~~D~~fv~~~t  240 (501)
T cd02766         175 LMRIIQEARKRGAKVVVI-DPYRTATAARADLHIQIRPGTDGAL-----------ALGVAKVLF--REGLYDRDFLARHT  240 (501)
T ss_pred             HHHHHHHHHHCCCEEEEE-CCCCCCHHHHHCEECCCCCCCCHHH-----------HHHHHHHHH--HCCCCCCCHHHHHC
T ss_conf             899999999879979996-6887717886287004679977999-----------852213998--77995332577751


Q ss_pred             HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCH
Q ss_conf             999875--------99999999976774467798742036-14552136644
Q gi|254780943|r  433 RSLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQ-TLLYVGRGSSY  475 (608)
Q Consensus       433 ~~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~-~~~~lG~G~~y  475 (608)
                      ..+..+        |+.+.+.-.-..+.++++|+.+...+ .+++.|.|.+.
T Consensus       241 ~Gfe~l~~~v~~~tpe~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~  292 (501)
T cd02766         241 EGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQR  292 (501)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHCC
T ss_conf             6099999876549999987770999999999999741468648984550022


No 136
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=93.16  E-value=0.68  Score=25.26  Aligned_cols=121  Identities=26%  Similarity=0.266  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----H------------HHHHHCCC--CCHHH-CCCCC
Q ss_conf             99767744677987420361455213664499999999999-----9------------74221144--23243-14463
Q gi|254780943|r  446 LQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----E------------ISYLHAEG--YAAGE-LKHGP  505 (608)
Q Consensus       446 l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E------------~syihaeg--~~agE-~kHGP  505 (608)
                      .+........+++-|.+-+.++..|.|-+++-|+--|--|.     |            .|.+-|-|  |.-.+ |-+.-
T Consensus        24 ~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqv  103 (176)
T COG0279          24 IEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQV  103 (176)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999999976997999769852451899999986078752789873686426377765650455889999999


Q ss_pred             HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf             788079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r  506 IALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG  568 (608)
Q Consensus       506 ~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~  568 (608)
                      -|+-.++-.++.|.|.+.. +-.+..++..+.+|-+||++|..++-......+ ..|.+|...
T Consensus       104 eA~g~~GDvLigISTSGNS-~nVi~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D-~~i~VPs~~  164 (176)
T COG0279         104 EALGQPGDVLIGISTSGNS-KNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLD-VEIRVPSTD  164 (176)
T ss_pred             HHCCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-EEEECCCCC
T ss_conf             9527888789998179997-789999999987698799995588750001131-578658886


No 137
>KOG2446 consensus
Probab=90.91  E-value=0.63  Score=25.49  Aligned_cols=76  Identities=13%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-----ECCHHH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             3565510352036543079999999986256673143-----042010-0123344555057752678818999999998
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID-----VSSEFR-YRDFVYSSKWASLFISQSGETADTLASLRYM  360 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~-----~asEf~-y~~~~~~~~tlvI~iSQSGeT~dti~Al~~a  360 (608)
                      =+++..|+=||.|.|.---+...-.+..+..--..+.     .+.... .-...-++.||+|.+|.++.|++|+.-++.+
T Consensus       147 gk~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaeta  226 (546)
T KOG2446         147 GKKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETA  226 (546)
T ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             97534689943465443429999862357888841798716880518999853496535999995675858888639999


Q ss_pred             HH
Q ss_conf             63
Q gi|254780943|r  361 RT  362 (608)
Q Consensus       361 k~  362 (608)
                      |+
T Consensus       227 k~  228 (546)
T KOG2446         227 KE  228 (546)
T ss_pred             HH
T ss_conf             99


No 138
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.67  E-value=1.3  Score=23.37  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999986302442465117876310002410136742001100078889999999999999776212001577632279
Q gi|254780943|r  354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIR  433 (608)
Q Consensus       354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~  433 (608)
                      ...++.++++|++++.| +-..|..+..+|..+++.-|-+.++           ++.|+-..+  ..+..+.+-..++..
T Consensus       180 ~~~~~~a~~~Gaklivi-dPr~t~ta~~Ad~~l~i~PGTD~AL-----------~lai~~~ii--~~~~~D~~fi~~~t~  245 (477)
T cd02759         180 GHWLVAAMKRGAKLIVV-DPRLTWLAARADLWLPIRPGTDAAL-----------ALGMLNVII--NEGLYDKDFVENWCY  245 (477)
T ss_pred             HHHHHHHHHCCCEEEEE-ECCCCCHHHHHCEEEECCCCCCHHH-----------HHHHHHHHH--HCCCCCHHHHHHCCC
T ss_conf             99999999769959998-2688826886153242177762998-----------866666887--668758045663356


Q ss_pred             HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCH
Q ss_conf             99875--------9999999997677446779874203614-552136644
Q gi|254780943|r  434 SLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQTL-LYVGRGSSY  475 (608)
Q Consensus       434 ~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~~~-~~lG~G~~y  475 (608)
                      .+..+        |+..++.-.-..+.++++|+.+.+.+.. +..|.|...
T Consensus       246 gfd~l~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~i~~g~g~~~  296 (477)
T cd02759         246 GFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAIDQ  296 (477)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHCC
T ss_conf             299999853348977766663998999999999997179789995722313


No 139
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted N-terminal iron-sulfur [4Fe-4S] cluster  binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.90  E-value=1.5  Score=22.94  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=7.1

Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             31000241013674200
Q gi|254780943|r  377 TIARESDFIFPIKAGPE  393 (608)
Q Consensus       377 ~la~~aD~~i~~~aG~E  393 (608)
                      .-|+.||++||...--|
T Consensus       453 eTa~~ADiVLPa~t~~E  469 (617)
T cd02770         453 PSARYADILLPDTTELE  469 (617)
T ss_pred             CCHHHCCEEECCCCHHH
T ss_conf             34531728935886321


No 140
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478   This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances  and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=89.78  E-value=0.34  Score=27.35  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=73.7

Q ss_pred             CCCCHHHHH-HHHHHH-HCCCCEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HHH
Q ss_conf             788189999-999986-3024424651178763100----02410136742001100078889999999999-----999
Q gi|254780943|r  347 SGETADTLA-SLRYMR-TQGLTIGSLVNVLESTIAR----ESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM-----AIY  415 (608)
Q Consensus       347 SGeT~dti~-Al~~ak-~~g~~tiaItN~~~S~la~----~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll-----al~  415 (608)
                      +=||==++. -|..|| ++|++.| ++-.-..+++|    .||..|.+..|-.++|..     |  ++-+++     --.
T Consensus       173 ~~esHPvv~~~l~~AKk~nGaKii-V~DpR~t~taksahi~AD~~i~~k~GTdial~n-----a--~a~viI~egL~Dk~  244 (694)
T TIGR01591       173 PAESHPVVASKLMRAKKRNGAKII-VIDPRKTETAKSAHIIADLFIPLKPGTDIALLN-----A--VANVIIEEGLYDKE  244 (694)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCHHHHHHHCCCEEEECCCCHHHHHHH-----H--HHHEEECCCCCCHH
T ss_conf             655543689999999850897899-975888602322111011065179970899997-----3--20024227861668


Q ss_pred             HHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf             7762120-015776322799987599999999976774467798742036145-52136
Q gi|254780943|r  416 AGKVRGY-INEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLL-YVGRG  472 (608)
Q Consensus       416 l~~~~g~-i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~-~lG~G  472 (608)
                      +=..|-. ...+++++.++. +-.|+.++++-.-..+.|+++|+.++++++.- +=|=|
T Consensus       245 Fi~~R~~W~~F~E~r~~V~~-~yTpE~vE~ITgV~~d~Ir~~A~~yA~a~~~Ai~wGlG  302 (694)
T TIGR01591       245 FIEKRTDWEGFEEFREIVKG-KYTPEYVEKITGVPADLIREIARMYAKAGSAAILWGLG  302 (694)
T ss_pred             HHHHHCCCCCHHHHHHHHCC-CCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             89751487853788877504-78753222125788889999999983589679995550


No 141
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.14  E-value=1.7  Score=22.56  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             89999999986302442465117876310002410136742001100078889999999999999776212001577632
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE  430 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~  430 (608)
                      .....-++.+|++|+++|.| +-..|..++.+|..+++.-|-+.++           ++.|+-..+  ..+..+.+-..+
T Consensus       178 p~~~~~~~~a~~~GaklIvi-DPr~t~ta~~Ad~~l~irPGtD~al-----------~la~~~~ii--~~gl~D~~fl~~  243 (539)
T cd02762         178 PDRVLRLKAAKDRGGSLVVI-DPRRTETAKLADEHLFVRPGTDAWL-----------LAAMLAVLL--AEGLTDRRFLAE  243 (539)
T ss_pred             HHHHHHHHHHHHCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCHHHH-----------HHHHHHHHH--HHCCHHHHHHHH
T ss_conf             79999999999779989998-5868848998756740588846999-----------999987766--510005777776


Q ss_pred             HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCH
Q ss_conf             279998759--------99999999767744677987420361455-2136644
Q gi|254780943|r  431 LIRSLVEIP--------RKMFDVLQNIYSQIEKLCCGLAKCQTLLY-VGRGSSY  475 (608)
Q Consensus       431 ~~~~L~~lp--------~~i~~~l~~~~~~i~~~a~~~~~~~~~~~-lG~G~~y  475 (608)
                      +...+..+-        +..++.-.-..+.++++|+.+...+...+ .+.|...
T Consensus       244 ~t~G~e~l~~~~~~~tpe~~a~itGV~~~~I~~~A~~~a~~~~~~i~~~~G~~~  297 (539)
T cd02762         244 HCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQT  297 (539)
T ss_pred             HCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             415499999998608988887652998899999999985389789996666663


No 142
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.18  E-value=1.9  Score=22.13  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             CEEEEECC-CCCC-HHHHHHHHHHHHCCCCEEEEECCCCC----------------CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             50577526-7881-89999999986302442465117876----------------310002410136742001100078
Q gi|254780943|r  339 WASLFISQ-SGET-ADTLASLRYMRTQGLTIGSLVNVLES----------------TIARESDFIFPIKAGPEIGVASTK  400 (608)
Q Consensus       339 tlvI~iSQ-SGeT-~dti~Al~~ak~~g~~tiaItN~~~S----------------~la~~aD~~i~~~aG~Ei~VasTK  400 (608)
                      ++++.+-| -|++ .-....++.||++|+++|.|--..+-                .-++.||..+.+..|-.++++   
T Consensus       165 d~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~~~lt~~t~~Ad~~l~irpGtD~Al~---  241 (574)
T cd02767         165 DLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGDIALL---  241 (574)
T ss_pred             CEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHCCCCCCHHHCEEECCCCCCHHHHH---
T ss_conf             88999777867868899999999998889699988975056664157554200034430544044056889589999---


Q ss_pred             HHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             8899999999999997762---12001577632279998759--------999999997677446779874203614552
Q gi|254780943|r  401 AFTCQLLVLVIMAIYAGKV---RGYINEEQERELIRSLVEIP--------RKMFDVLQNIYSQIEKLCCGLAKCQTLLYV  469 (608)
Q Consensus       401 sftaql~~l~llal~l~~~---~g~i~~~~~~~~~~~L~~lp--------~~i~~~l~~~~~~i~~~a~~~~~~~~~~~l  469 (608)
                              +.++-..+...   .+.++.+-.+++...+..+.        +.+++.---..+.++++|+.+...+..+++
T Consensus       242 --------~gi~~~lie~d~~~~~~~D~~FI~~~t~Gfee~~~~v~~~~~e~v~~~tGv~~e~I~~~A~~~a~a~~~ii~  313 (574)
T cd02767         242 --------NGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREEIEAFAAMYAKSERVVFV  313 (574)
T ss_pred             --------HHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             --------999999997365457866889998744679999999874999999988698999999999998337882799


Q ss_pred             -ECCCC
Q ss_conf             -13664
Q gi|254780943|r  470 -GRGSS  474 (608)
Q Consensus       470 -G~G~~  474 (608)
                       |.|+.
T Consensus       314 wgmGit  319 (574)
T cd02767         314 WGMGIT  319 (574)
T ss_pred             ECCCCC
T ss_conf             644544


No 143
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.80  E-value=2  Score=21.97  Aligned_cols=106  Identities=20%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--
Q ss_conf             999998630244246511787631000241013674200110007888999999999999977621200157763227--
Q gi|254780943|r  355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI--  432 (608)
Q Consensus       355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~--  432 (608)
                      ..+..+|++|++++.| +-.-|..+..||..+++.-|-+.++           ++.|+-..+  ..+..+.+-..++.  
T Consensus       190 ~~i~~ar~~GaklivI-DPr~t~ta~~AD~~l~irPGTD~aL-----------~la~~~~ii--~e~~~D~~fv~~~t~~  255 (461)
T cd02750         190 HFLTEARYNGAKVVVV-SPDYSPSAKHADLWVPIKPGTDAAL-----------ALAMAHVII--KEKLYDEDYLKEYTDL  255 (461)
T ss_pred             HHHHHHHHCCCEEEEE-CCCCCHHHHHHCCCCCCCCCCHHHH-----------HHHHHHHHH--HCCCCCHHHHHHHHCC
T ss_conf             9999999779979992-6999878997270468799961999-----------999999998--7688189999987385


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf             99987599999999976774467798742036-1455213664
Q gi|254780943|r  433 RSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQ-TLLYVGRGSS  474 (608)
Q Consensus       433 ~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~-~~~~lG~G~~  474 (608)
                      ..+.--|+..++.-.-..+.++++|+.+...+ .+++.|.|..
T Consensus       256 ~~~~ytpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~G~~  298 (461)
T cd02750         256 PFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGIN  298 (461)
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHC
T ss_conf             3321999999988795999999999999867993898172534


No 144
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.66  E-value=2  Score=22.01  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=29.0

Q ss_pred             ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf             3889999768150689998999978988972476156788876
Q gi|254780943|r   90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLE  132 (608)
Q Consensus        90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~  132 (608)
                      ..++.|+=+|+=.+..+++.- .+.|....|  +.|+++.++.
T Consensus        67 ~~d~vV~Sp~I~~~~p~~~~a-~~~gi~v~~--~~e~l~~~~~  106 (459)
T PRK00421         67 GADVVVVSSAIKPDNPELVAA-RELGIPVVR--RAEMLAELMR  106 (459)
T ss_pred             CCCEEEECCCCCCCCHHHHHH-HHCCCCEEE--HHHHHHHHHH
T ss_conf             999999899859989999999-987997988--9999999982


No 145
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a  Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.71  E-value=2.9  Score=20.91  Aligned_cols=40  Identities=13%  Similarity=0.314  Sum_probs=24.8

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999986302442465117876310002410136742001
Q gi|254780943|r  354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      ...++.++++|++++.| +-..|..++.+|..+++..|-+.
T Consensus       175 ~~~i~~a~~~Gak~vvi-DPr~t~ta~~Ad~~l~irPGtD~  214 (512)
T cd02753         175 ARRIKRAKRNGAKLIVA-DPRRTELARFADLHLQLRPGTDV  214 (512)
T ss_pred             HHHHHHHHHCCCEEEEE-CCCCCCHHHHHHHHCCCCCCCHH
T ss_conf             99999998789879994-68667078875524256889428


No 146
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=84.21  E-value=3  Score=20.77  Aligned_cols=30  Identities=20%  Similarity=0.125  Sum_probs=18.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             442465117876310002410136742001
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      .-.+...+.--++=++.||++||...--|.
T Consensus       574 ld~iV~~D~~mt~Ta~yADiVLPaat~~Ek  603 (912)
T TIGR03479       574 LELIVDINFRMDSTAMYADIVLPAAWHYEK  603 (912)
T ss_pred             CCEEEEEECCCCCHHHHHHHHCCCCCHHHH
T ss_conf             997999825128178764200666416552


No 147
>PRK08350 hypothetical protein; Provisional
Probab=84.13  E-value=1.3  Score=23.41  Aligned_cols=56  Identities=9%  Similarity=-0.011  Sum_probs=40.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55505775267881899999999863024424651178763100024101367420
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      .|++.|=+-|=|+-++|++|++.||+.|..++-=--.-++.=+..+|..+-++||.
T Consensus       254 aNaILIK~NQIGTlTETleai~lA~~~g~~~viSHRSGETEDt~IADLAVa~~~gq  309 (341)
T PRK08350        254 YNALSIKPINLGTLTDLYNFVNDVKSEKITPILAEAKYEPADETLPHLALGLRCPA  309 (341)
T ss_pred             CCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             77079822222129999999999998799489985789864016999999718982


No 148
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=83.52  E-value=1.4  Score=23.11  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=41.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55505775267881899999999863024424651178763100024101367420
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      -++++|=..|-|+-.||+++++.||+.|..++.=-..-++.-+-.+|..+-++||.
T Consensus       201 ~NaiLiK~NQiGTlset~e~~~~ak~~g~~~ivShRSGETeD~~iaDLAVg~~a~~  256 (296)
T pfam00113       201 CNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSGETEDTFIADLVVGLNAGQ  256 (296)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf             77169712111019999999999998696499866988776522999888608881


No 149
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046   This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=83.03  E-value=3.3  Score=20.45  Aligned_cols=90  Identities=18%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCC------------------CCCCCEEEEECCC-C-CC
Q ss_conf             035203654307999999998625--667314304201001233------------------4455505775267-8-81
Q gi|254780943|r  293 LLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFV------------------YSSKWASLFISQS-G-ET  350 (608)
Q Consensus       293 I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~------------------~~~~tlvI~iSQS-G-eT  350 (608)
                      .|..|.|||-=|+...+-++..+.  .+|    .+|...|....                  +..-|++|++-|- | ..
T Consensus       156 fYtSGRG~SNEaay~~qLfaR~~GsNNlp----DcS~mCH~pS~vaL~~SiG~G~g~v~l~D~~~~D~~v~iG~n~gtN~  231 (824)
T TIGR01701       156 FYTSGRGTSNEAAYLYQLFARSLGSNNLP----DCSNMCHEPSSVALKKSIGIGKGSVLLEDFEHTDLLVLIGSNAGTNH  231 (824)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCC
T ss_conf             11144632689999999999872778713----33543168611234220232303677300005837999545489888


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             899999999863024424651178763100024101
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      +-.+..|..+|++|+++|.|-=-.+--|-|..+=-.
T Consensus       232 PR~l~~L~~a~~rG~KiI~iNPl~E~GL~rF~~P~~  267 (824)
T TIGR01701       232 PRMLKELIKAKKRGAKIIAINPLRERGLERFASPQI  267 (824)
T ss_pred             CHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCC
T ss_conf             436889999996398399975885501130167887


No 150
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=82.01  E-value=1.8  Score=22.29  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH------HHC---C---CCC-C-------------------CCC
Q ss_conf             1035203654307999999998625667-31430420------100---1---233-4-------------------455
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE------FRY---R---DFV-Y-------------------SSK  338 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE------f~y---~---~~~-~-------------------~~~  338 (608)
                      ..|-.--|..+.+.....||-+-..+.| ++.+.|..      |..   .   ... +                   .-+
T Consensus       251 y~y~~~~~~~~s~~e~i~~y~~l~~kYPIisIEDp~~E~D~~gw~~lt~~lg~~~qiVGDDL~vTn~~rl~~gi~~~~~n  330 (408)
T cd03313         251 YVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAAN  330 (408)
T ss_pred             EEEECCCCCEECHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf             14735888510899999999999975987788568872127899999986598079988742447889986056517663


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             505775267881899999999863024424651178763100024101367420
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      +++|=+.|-|+-.||+++++.||+.|..++.=--.-++.=.-.+|..+-++||.
T Consensus       331 aiLiK~NQiGTvset~ea~~la~~~g~~~ivShRSGETeD~~IaDLAVg~ga~~  384 (408)
T cd03313         331 ALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ  384 (408)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf             799805457729999999999998698799978998865017999898708980


No 151
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=81.47  E-value=2.2  Score=21.74  Aligned_cols=55  Identities=13%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5505775267881899999999863024424651178763100024101367420
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      ++++|=+.|-|+-.||+++++.||+.|..++.=--.-++.-.-.+|..+-++||.
T Consensus       347 naiLIK~NQiGTlset~eai~~A~~~g~~~ivShRSGETeD~~iaDLAVg~ga~~  401 (442)
T PTZ00081        347 NALLLKVNQIGSITEAIEACKLCMKNGWGVMVSHRSGETEDTFIADLVVGLGTGQ  401 (442)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf             6389833232209999999999998798799957988766300888777448982


No 152
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.05  E-value=3.9  Score=19.97  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             5505775267881899999999863024424651178763100024101367
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      .+++|.+.+.-+.    .|+++|+..|.+++||+++-  .--...|+.||.+
T Consensus       128 Pdliiv~d~~~~~----~ai~Ea~~l~IPvI~i~Dtn--~~p~~idypIP~N  173 (193)
T cd01425         128 PDLVIVLDPRKEH----QAIREASKLGIPVIAIVDTN--CDPDLIDYPIPAN  173 (193)
T ss_pred             CCEEEEECCCCCH----HHHHHHHHHCCCEEEEECCC--CCCCCCCEEEECC
T ss_conf             9989998898416----89999986187557885089--9966587787588


No 153
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=80.51  E-value=2.3  Score=21.56  Aligned_cols=99  Identities=14%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH---------HH--C-------------CCC--------CCCCCCE
Q ss_conf             35203654307999999998625667-31430420---------10--0-------------123--------3445550
Q gi|254780943|r  294 LVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE---------FR--Y-------------RDF--------VYSSKWA  340 (608)
Q Consensus       294 ~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE---------f~--y-------------~~~--------~~~~~tl  340 (608)
                      .+-+-|.++.+.....||-+-..+.| +..+.|..         |.  .             .++        .-.-+++
T Consensus       255 ~~~~~~~~~s~~eli~~y~~l~~~YPI~sIEDp~~EdD~~gw~~lt~~lg~k~~iVGDDL~vTn~~rl~kgi~~~~~Nai  334 (427)
T PRK00077        255 VLEGEGKVLTSEEQIDYLAELVDKYPIVSIEDGLDENDWDGWALLTERLGDKVQLVGDDLFVTNPKILKEGIEKGAANSI  334 (427)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf             65477764588999999999998799778746888226899999999709967998884134688999725540766479


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5775267881899999999863024424651178763100024101367420
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      +|=+.|-|+-.+|++|++.||+.|..++.=--.-++.=+-.+|..+-++||.
T Consensus       335 LiK~NQiGTvset~eai~la~~~g~~~ivShRSGETeD~~IaDLAVg~ga~~  386 (427)
T PRK00077        335 LIKVNQIGTLTETLEAIELAKRAGYTAVISHRSGETEDTTIADLAVATNAGQ  386 (427)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCH
T ss_conf             9844346739999999999998698799978989866215999898608973


No 154
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=80.14  E-value=3.1  Score=20.62  Aligned_cols=55  Identities=16%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             45550577526788189999999986302442465117876310002410136742
Q gi|254780943|r  336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG  391 (608)
Q Consensus       336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG  391 (608)
                      .+-+++|.|--|+...-.-..++.|+++|+++ .|.|-..+++...+|.+|.-.||
T Consensus       203 ~~~DlllviGTSl~V~Paa~l~~~a~~~g~~v-viIN~~~T~~D~~ad~~i~~~~~  257 (260)
T cd01409         203 AEADALLVLGSSLMVYSGYRFVLAAAEAGLPI-AIVNIGPTRADHLATLKVDARCG  257 (260)
T ss_pred             HCCCEEEEECCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCCCCCCEEEEEECCHH
T ss_conf             70998999837851243678999999879939-99899999998644499927722


No 155
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=79.69  E-value=4.3  Score=19.67  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE-CCC-CCCCCCCCCCCCCCC
Q ss_conf             4455505775267881899999999863024424651-178-763100024101367
Q gi|254780943|r  335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV-NVL-ESTIARESDFIFPIK  389 (608)
Q Consensus       335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt-N~~-~S~la~~aD~~i~~~  389 (608)
                      +++-+-|..+|.+-+..+.++.++...++|...++|+ |.+ +.++...+|+.|.+.
T Consensus        79 ~t~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~  135 (172)
T pfam10740        79 ITETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLK  135 (172)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECC
T ss_conf             775576999769999789999999999869988998168888876144402667647


No 156
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=79.18  E-value=2.6  Score=21.16  Aligned_cols=98  Identities=17%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCC-CEEEECC---H---HHC-----CC--------CCCC-------------CCCEEE
Q ss_conf             203654307999999998625667-3143042---0---100-----12--------3344-------------555057
Q gi|254780943|r  296 SSCGTSYLAGLVGKFWFERLARLK-VEIDVSS---E---FRY-----RD--------FVYS-------------SKWASL  342 (608)
Q Consensus       296 vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~as---E---f~y-----~~--------~~~~-------------~~tlvI  342 (608)
                      +--|.++-......||.+-..+.| ++.+.+.   +   |..     .+        ...+             .|++.|
T Consensus       254 ~~~~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~~~aNaiLI  333 (423)
T COG0148         254 VLEGESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILI  333 (423)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEECCHHHHHHHHHHCCCCEEEE
T ss_conf             63376468799999999999769978970898843078999999860983899767542328899998887456753899


Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             752678818999999998630244246511787631000241013674200
Q gi|254780943|r  343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE  393 (608)
Q Consensus       343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E  393 (608)
                      -+-|=|+-++|++|++.|++.|.+++----.-++.=+..+|..+-++||.=
T Consensus       334 K~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqI  384 (423)
T COG0148         334 KPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQI  384 (423)
T ss_pred             ECHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             520023189999999999987980887537788664338889998189801


No 157
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=78.74  E-value=4  Score=19.92  Aligned_cols=55  Identities=22%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             45550577526788189999999986302442465117876310002410136742
Q gi|254780943|r  336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG  391 (608)
Q Consensus       336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG  391 (608)
                      .+-+++|.+--|..+.-.-..++.++++|++++ +.|...++..+.+|.++.-.|+
T Consensus       163 ~~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iIN~~~T~~d~~ad~~i~g~~~  217 (224)
T cd01412         163 AKADLFLVIGTSGVVYPAAGLPEEAKERGARVI-EINPEPTPLSPIADFAFRGKAG  217 (224)
T ss_pred             HHCCEEEEECCCCEEHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCEEEECCHH
T ss_conf             719979998988555677789999997699499-9889999997635889988899


No 158
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=77.63  E-value=4.9  Score=19.26  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHCCC-CEEEEECCCCHH
Q ss_conf             4467798742036-145521366449
Q gi|254780943|r  452 QIEKLCCGLAKCQ-TLLYVGRGSSYP  476 (608)
Q Consensus       452 ~i~~~a~~~~~~~-~~~~lG~G~~y~  476 (608)
                      .+.++++.+++++ ..+|.|-|+.+.
T Consensus       234 ~i~e~a~~mKna~Fg~if~GlGlt~S  259 (429)
T COG1029         234 EIEELADMMKNAKFGAIFVGLGLTSS  259 (429)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCEEEC
T ss_conf             99999999863981249983020003


No 159
>PRK09939 putative oxidoreductase; Provisional
Probab=77.47  E-value=5  Score=19.22  Aligned_cols=15  Identities=27%  Similarity=0.302  Sum_probs=12.3

Q ss_pred             HCCCCCEEEEEEEEC
Q ss_conf             315874348999958
Q gi|254780943|r   25 EYRGYDSSGMATICD   39 (608)
Q Consensus        25 e~RG~Ds~Gia~~~~   39 (608)
                      |-.|.|--|.|.-+.
T Consensus        43 q~~gfdCp~Cawp~p   57 (759)
T PRK09939         43 KPEGFDCPGCAWPDP   57 (759)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             999987998889899


No 160
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.21  E-value=5.1  Score=19.18  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             EEEEEECC---CCEEEECCC--CCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEEC-CCCCCCCCC
Q ss_conf             38999749---960776089--61366137620111110379827651889730574100-333222100
Q gi|254780943|r  168 SIIVARKG---PPLIIGHGE--GEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIY-DSQGYEIER  231 (608)
Q Consensus       168 ~i~~ar~g---sPL~iG~~~--~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~-~~~~~~~~~  231 (608)
                      -+|+.-|+   +-=+||.-+  ..+-=.-|-+..--=..++..+.||+.+.+-+.+++.. ++...+.+.
T Consensus       127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             EEEEECCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCEEEEECCCCEEEEECCCEECCCCCCCCCCCH
T ss_conf             7995227877787448998520000021233467768211588359868999578644055557542343


No 161
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941   Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown  to be evolutionary related to enolase.   Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=76.82  E-value=3  Score=20.75  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             555057752678818999999998630244246511787-63100024101367420
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE-STIARESDFIFPIKAGP  392 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~-S~la~~aD~~i~~~aG~  392 (608)
                      .|++.|=+=|=|+=+||++|++.|+++|+.+| |....| +.=+..||..+=+++|.
T Consensus       335 ANsILIK~NQIGTlTET~~Av~lA~~~gY~~v-iSHRSGETEDttIADLAVA~~aGq  390 (430)
T TIGR01060       335 ANSILIKLNQIGTLTETLDAVELAKKAGYTAV-ISHRSGETEDTTIADLAVALNAGQ  390 (430)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             62477502777548889999999996698489-971578983126999999833887


No 162
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435   The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , .    In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) .   The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=76.74  E-value=3.1  Score=20.65  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCC-CCCCCCCCCCCCCCCCHH
Q ss_conf             577526788189999999986302442465117----87631000-241013674200110007
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNV----LESTIARE-SDFIFPIKAGPEIGVAST  399 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~----~~S~la~~-aD~~i~~~aG~Ei~VasT  399 (608)
                      |++.|-||.|+=.-+.++..+++|+++..|=-.    .+-.|-.. .|..=.-.||-|.-|-++
T Consensus         4 i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~AGA~~v~~~~   67 (165)
T TIGR00176         4 IVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHREAGADAVIVAS   67 (165)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCEEEEEC
T ss_conf             8962588678999999999970799508986089888756527998731332104362788667


No 163
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.60  E-value=5.4  Score=19.00  Aligned_cols=29  Identities=24%  Similarity=0.416  Sum_probs=11.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             244246511787631000241013674200
Q gi|254780943|r  364 GLTIGSLVNVLESTIARESDFIFPIKAGPE  393 (608)
Q Consensus       364 g~~tiaItN~~~S~la~~aD~~i~~~aG~E  393 (608)
                      |++++.| +-..|..+..+|..+++.-|-+
T Consensus       188 Gaklvvi-dPr~t~ta~~Ad~~l~irPGtD  216 (565)
T cd02754         188 GAKIIVV-DPRRTRTADIADLHLPIRPGTD  216 (565)
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHCCCCCH
T ss_conf             9889995-6887818998664500489932


No 164
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=75.24  E-value=5.7  Score=18.82  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             505775267881899999999863024424651178763100024101367
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      +++|.+.+.-+.    .|+++|+..|.+++||+++-..+  ...|+.||.+
T Consensus       139 d~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn~~p--~~idypIP~N  183 (205)
T pfam00318       139 DLVIVVDPNKEH----IAIKEASKLGIPVIAIVDTNCDP--DLIDYPIPGN  183 (205)
T ss_pred             CEEEEECCCCCH----HHHHHHHHCCCCEEEECCCCCCC--CCCCEEEECC
T ss_conf             869985786453----89999987599756540599995--4387788578


No 165
>pfam11004 DUF2843 Protein of unknown function (DUF2843). This bacterial family of proteins has no known function.
Probab=75.10  E-value=3.5  Score=20.29  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=19.9

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             54307999999998625667314304
Q gi|254780943|r  300 TSYLAGLVGKFWFERLARLKVEIDVS  325 (608)
Q Consensus       300 TSy~Aal~~~~~~e~~~~i~v~v~~a  325 (608)
                      .--||+|.|+|++|+-.-+|+....-
T Consensus       239 qv~HAamsGQ~mLEQTfyLp~~a~~~  264 (281)
T pfam11004       239 QVSHAAMSGQHMLEQTFYLPPEAMKD  264 (281)
T ss_pred             CCHHHHHCCHHHHHHHHCCCHHHCCC
T ss_conf             40777751077665130178878218


No 166
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=74.23  E-value=4.5  Score=19.52  Aligned_cols=56  Identities=13%  Similarity=0.019  Sum_probs=44.3

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             445550577526788189999999986302442465117876310002410136742
Q gi|254780943|r  335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG  391 (608)
Q Consensus       335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG  391 (608)
                      ..+-+++|.|--|+...-.-.-.+.++++|+++ .|.|-..+++...+|..|.-.||
T Consensus       212 ~~~aDlllviGTSl~V~PA~~l~~~a~~~g~~v-viiN~~~T~~D~~ad~~i~~~~~  267 (285)
T PRK05333        212 LDAADAVLVVGSSLMVYSGYRFCVWAARQGKPI-AALNLGRTRADPLLTLKVEASCA  267 (285)
T ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCCCCEEEEEECCHH
T ss_conf             862999999787842252136899999779929-99899899998535399918899


No 167
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.94  E-value=5.1  Score=19.17  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=21.9

Q ss_pred             CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf             889999768150689998999978988972476156
Q gi|254780943|r   91 EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEV  126 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEv  126 (608)
                      -++.|+=.|+=.+..+++. ..+.|....|  |.|+
T Consensus        73 ~d~vV~SPgI~~~~p~~~~-a~~~~i~v~~--~~el  105 (450)
T PRK02472         73 FDLMVKNPGIPYDNPMVEE-ALEKGIPIIT--EVEL  105 (450)
T ss_pred             CCEEEECCCCCCCCHHHHH-HHHCCCCEEE--HHHH
T ss_conf             8799989987999999999-9986996743--8788


No 168
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=73.76  E-value=6.2  Score=18.58  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             5057752678818999999998630244246511787631000241013674
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA  390 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a  390 (608)
                      +++|.+.+.-|.    .|++.|++.|.+++||+++-..|  ...|+.||.|-
T Consensus       159 d~viv~d~~~e~----~AV~EA~kl~IPvI~ivDTn~dP--~~idypIP~ND  204 (255)
T PRK05299        159 DALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCDP--DGVDYPIPGND  204 (255)
T ss_pred             CEEEEECCCCCH----HHHHHHHHCCCCEEEEECCCCCC--CCCCEEECCCC
T ss_conf             879984785337----99999997599888762489996--65865533775


No 169
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=73.52  E-value=5.6  Score=18.90  Aligned_cols=52  Identities=12%  Similarity=0.041  Sum_probs=37.4

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             44555057752678818999999998630244246511787631000241013
Q gi|254780943|r  335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      ..+-+++|.+--|+...-.-.-++.|+++|+++ .+.|...+++...+|.+|.
T Consensus       153 ~~~aDlllviGTSl~V~Paa~l~~~a~~~g~~v-viiN~~~T~~d~~ad~~i~  204 (206)
T cd01410         153 ACRADLFLCLGTSLQVTPAANLPLKAARAGGRL-VIVNLQPTPKDKLADLVIH  204 (206)
T ss_pred             HHHCCEEEEECCCCEECCHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCEEEE
T ss_conf             984998999767955522767899999759909-9989999999842248983


No 170
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.04  E-value=6.4  Score=18.46  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999986302442465117876310002410136742001100078889999999999999776212
Q gi|254780943|r  355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRG  421 (608)
Q Consensus       355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g  421 (608)
                      .|++.|+..|.+++|++++-.+|  ...|+.||.|-         ++--|--+.+.++|-.+.+.++
T Consensus       170 iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~Nd---------da~rsi~Li~~~lA~ai~e~r~  225 (252)
T COG0052         170 IAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGND---------DAIRSIALIYWLLARAILEGRG  225 (252)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCC--CCCCEEECCCC---------HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999997599989984189997--65765522887---------0898999999999999998743


No 171
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=72.00  E-value=5.8  Score=18.76  Aligned_cols=54  Identities=17%  Similarity=0.093  Sum_probs=34.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             5550577526788189999999986302442465117876310002410136742
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG  391 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG  391 (608)
                      +-+++|.+--|+...-.-.-++.++++|++++ +.|...+++...+|.++.-.||
T Consensus       177 ~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vv-iiN~~~t~~d~~ad~~i~g~~~  230 (239)
T PRK00481        177 EADLFIVIGTSLVVYPAAGLPHEARAHGAKTV-EINLEPTPLDSQFDLVIRGKAG  230 (239)
T ss_pred             CCCEEEEECCCCEECCHHHHHHHHHHCCCEEE-EECCCCCCCCCCCCEEEECCHH
T ss_conf             29989996788554067776999997699099-9829999998733889979899


No 172
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=71.94  E-value=6.8  Score=18.29  Aligned_cols=30  Identities=17%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             CCCCEEEEECCCCC-CHHHHHHHHHHHHCCC
Q ss_conf             65510352036543-0799999999862566
Q gi|254780943|r  289 NISGLLVSSCGTSY-LAGLVGKFWFERLARL  318 (608)
Q Consensus       289 ~~~~I~~vGcGTSy-~Aal~~~~~~e~~~~i  318 (608)
                      +.+.++|||==+|= |||+.|.||.++-+.+
T Consensus       168 ~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t  198 (566)
T TIGR02477       168 KLDGLVIIGGDDSNTNAALLAEYFAKKGLKT  198 (566)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             8964899747986799999999999738992


No 173
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.43  E-value=7  Score=18.22  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=55.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999986302442465117876310002410136742001100078889999999999999776212001577632279
Q gi|254780943|r  354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIR  433 (608)
Q Consensus       354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~  433 (608)
                      ...++.++++|++.+.| +-..|.++..+|..+++.-|-+.++           ++.|+...+.  .+..+.+-..++..
T Consensus       176 ~~~~~~a~~~Gaklivi-dPr~t~ta~~Ad~~l~irPGtD~al-----------~~a~~~~ii~--e~l~D~~fv~~~t~  241 (454)
T cd02755         176 ARRLMKALENGAKVVVV-DPRFSELASKADEWIPIKPGTDLAF-----------VLALIHVLIS--ENLYDAAFVEKYTN  241 (454)
T ss_pred             HHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHCCCCCCCHHHH-----------HHHHHHHHHH--CCCCCHHHHHHHCC
T ss_conf             99999999759979997-1777648896543407799965999-----------9888788987--68867688998556


Q ss_pred             HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCC-E-EEEECCC
Q ss_conf             99875--------999999999767744677987420361-4-5521366
Q gi|254780943|r  434 SLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQT-L-LYVGRGS  473 (608)
Q Consensus       434 ~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~~-~-~~lG~G~  473 (608)
                      .+..+        |+...++-.-..+.++++|+.+...+. . +..|.|.
T Consensus       242 g~~~~~~~~~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~~~~~~g~~~  291 (454)
T cd02755         242 GFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAAAPHAVVDPGWRG  291 (454)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             29999999763498999876299799999999999705996999778662


No 174
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.40  E-value=5.8  Score=18.79  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             2010012334455505775267881899999999863024424651178
Q gi|254780943|r  326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                      +||.|+..--..-.++++|+-.+.-.|.-..++..++.|..++=+|++.
T Consensus        28 TEF~YR~~~~~~A~V~vGi~~~~~~~e~~~l~~~L~~~gy~~~DlsdnE   76 (85)
T cd04906          28 TEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDE   76 (85)
T ss_pred             EEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf             0357743787637999998727957899999999998799717787688


No 175
>KOG2670 consensus
Probab=70.34  E-value=7.3  Score=18.09  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             5505775267881899999999863024424651178-76310002410136742001
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL-ESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~-~S~la~~aD~~i~~~aG~Ei  394 (608)
                      ++|.+-+-|=|.-+++++|.+.+++.|--++ +.... +..=...+|.++-+.+|.=.
T Consensus       340 N~LLlKvNQIGtvtEsieA~~~a~~~GwgvM-vSHRSGETeDtFIaDL~VGl~tgqIK  396 (433)
T KOG2670         340 NALLLKVNQIGTVTESIEAAKLARSAGWGVM-VSHRSGETEDTFIADLVVGLGTGQIK  396 (433)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             4157530115304999999999987596078-75257886430266633210124012


No 176
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=70.18  E-value=7.4  Score=18.03  Aligned_cols=16  Identities=19%  Similarity=0.324  Sum_probs=9.6

Q ss_pred             CCCCCEEEECCCCCCC
Q ss_conf             0896136613762011
Q gi|254780943|r  182 HGEGEMFVGSDVTALT  197 (608)
Q Consensus       182 ~~~~~~~vaSd~~al~  197 (608)
                      ...=+.+++||..-|+
T Consensus        84 iatmGvIvg~dipMfl   99 (472)
T COG2213          84 IATMGVIVGADIPMFL   99 (472)
T ss_pred             EEEEEEEECCCCHHHH
T ss_conf             2444666437826888


No 177
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235    Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=69.60  E-value=2.3  Score=21.62  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=17.1

Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99986302442465117876310002410136742001
Q gi|254780943|r  357 LRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       357 l~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      |...|+.|.++|-=      ||| ..|--++-.-|+|.
T Consensus       146 L~~t~~LGY~~vFW------SlA-y~DW~~D~Q~G~~~  176 (225)
T TIGR02884       146 LAYTKELGYKTVFW------SLA-YKDWEVDKQKGKEY  176 (225)
T ss_pred             HHHHHHCCCCEEEE------EEE-ECCCCCCCCCCHHH
T ss_conf             99999748821100------122-02677698778777


No 178
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=69.33  E-value=7.7  Score=17.91  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6889999999982798089995653210001346627986887815665899999999999
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAY  585 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy  585 (608)
                      +|+.  ++.|.+..|=.|++|.|..-.  .+..   .+.+|.+++-.-++-..+  +++|=
T Consensus       168 ~E~I--Av~EA~kLgIPvvA~vDTNCd--Pd~v---D~~IPgNDDairSi~L~~--~~~Ad  219 (227)
T TIGR01011       168 KEKI--AVAEARKLGIPVVAIVDTNCD--PDVV---DYPIPGNDDAIRSIRLLT--SLIAD  219 (227)
T ss_pred             CCHH--HHHHHHHCCCCEEEEECCCCC--CCCC---CCCCCCCCCHHHHHHHHH--HHHHH
T ss_conf             1068--999973379978987047888--8866---502579730589999999--99999


No 179
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780   HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=68.44  E-value=8  Score=17.79  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=12.3

Q ss_pred             CCCCCC-C-CCCCCCCCCCCCCCHH
Q ss_conf             310002-4-1013674200110007
Q gi|254780943|r  377 TIARES-D-FIFPIKAGPEIGVAST  399 (608)
Q Consensus       377 ~la~~a-D-~~i~~~aG~Ei~VasT  399 (608)
                      .|||+. | -++++..|-|--.|+|
T Consensus       137 ~iA~~~Pdr~VVf~aiGFETTaP~T  161 (384)
T TIGR00075       137 KIAKENPDRKVVFFAIGFETTAPTT  161 (384)
T ss_pred             HHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf             9998687994799961551261469


No 180
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379    FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=67.99  E-value=4.8  Score=19.36  Aligned_cols=109  Identities=26%  Similarity=0.326  Sum_probs=65.3

Q ss_pred             EEECC--CCCCHHHHHHHHHHHHCCCCCEEEEC------CHHHCCCC--CCCCCCEEEEECCCCCCHHH--------HHH
Q ss_conf             52036--54307999999998625667314304------20100123--34455505775267881899--------999
Q gi|254780943|r  295 VSSCG--TSYLAGLVGKFWFERLARLKVEIDVS------SEFRYRDF--VYSSKWASLFISQSGETADT--------LAS  356 (608)
Q Consensus       295 ~vGcG--TSy~Aal~~~~~~e~~~~i~v~v~~a------sEf~y~~~--~~~~~tlvI~iSQSGeT~dt--------i~A  356 (608)
                      |-|+|  =|=--+|.|+|   .-+.+.|-+-+.      -||.-.+.  ---++++| .++-|=+|+=.        ...
T Consensus       164 FAGSGVGKSTLLGMiAr~---t~ADV~VIALIGERGREV~EFiE~~LG~eGl~kSVV-VVATSD~spl~R~~aA~~A~~i  239 (439)
T TIGR02545       164 FAGSGVGKSTLLGMIARY---TEADVNVIALIGERGREVKEFIEDDLGEEGLKKSVV-VVATSDESPLMRIRAAYAATAI  239 (439)
T ss_pred             ECCCCHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEE-EEECCCCCHHHHHHHHHHHHHH
T ss_conf             337744478898887506---658878998444656643135543035110254079-9827998689998888999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHH-HHHHHHH
Q ss_conf             99986302442465117876310002410136742001100-----0788899999999-9999977
Q gi|254780943|r  357 LRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA-----STKAFTCQLLVLV-IMAIYAG  417 (608)
Q Consensus       357 l~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va-----sTKsftaql~~l~-llal~l~  417 (608)
                      .++.|++|..++-+--    ||+|.|-      |-+|||.|     +||+||.++..++ -|.=..|
T Consensus       240 AEYFRDqGk~VLL~~D----SlTRFAm------AqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG  296 (439)
T TIGR02545       240 AEYFRDQGKDVLLLMD----SLTRFAM------AQREIGLAAGEPPTTKGYPPSVFSELPRLLERAG  296 (439)
T ss_pred             HHHHHHCCCCEEEEEC----HHHHHHH------HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999864983477621----1788998------9889998717876667897048999999998708


No 181
>pfam10079 DUF2317 Uncharacterized protein conserved in bacteria (DUF2317). Members of this family of hypothetical bacterial proteins have no known function.
Probab=67.67  E-value=6.3  Score=18.53  Aligned_cols=64  Identities=20%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8999899997898897247615678887634320010267799999988751222010046872
Q gi|254780943|r  104 FSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPH  167 (608)
Q Consensus       104 ~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~~p~  167 (608)
                      -..++.-|..--..+....-++-+..++...+.++.++.+|+..++..+=|.|.+++++.++|.
T Consensus       174 ~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~y~~~~tl~~af~~l~~~LF~~~GLvilD~~d~~  237 (541)
T pfam10079       174 TEGLREVLEEFFAELGETEYTEELLELLEEAYLESETLADAFARLMNELFADYGLVLLDSDDPE  237 (541)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCCHH
T ss_conf             8999999999998748984199999999999756899999999999999856897998899999


No 182
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=66.60  E-value=8.7  Score=17.55  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88189999999986302442465117876310002410136742001
Q gi|254780943|r  348 GETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       348 GeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      -.+..+.+|++.     ...+.+...--+.-++.||++||-..--|.
T Consensus       402 pd~~~~~~al~k-----ldfvVv~D~~~teTa~~ADvVLPaat~~Er  443 (567)
T cd02765         402 PDRDRWLKVMKN-----LDFIVVVDIFHTPTVRYADIVLPAAHWFEV  443 (567)
T ss_pred             CCHHHHHHHHHC-----CCCEEEEECEECHHHHHCCEEECCCCCCEE
T ss_conf             068999999861-----482898504637657756876246540125


No 183
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945    This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs  (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=66.23  E-value=5.9  Score=18.73  Aligned_cols=26  Identities=15%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             18999999998630244246511787
Q gi|254780943|r  350 TADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       350 T~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      -+.+.++++.+|.+|.+|..||||.-
T Consensus       107 ~p~m~~~i~~~~~~Gfkt~~lTNN~~  132 (228)
T TIGR02247       107 LPEMVKAIKSLRAKGFKTALLTNNFY  132 (228)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             87899999999757775888616730


No 184
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.12  E-value=8.9  Score=17.48  Aligned_cols=34  Identities=24%  Similarity=0.153  Sum_probs=23.5

Q ss_pred             CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf             8899997681506899989999789889724761567
Q gi|254780943|r   91 EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVI  127 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi  127 (608)
                      -++.|+=-|+=.+..++++ ..++|....|  |-|..
T Consensus        77 ~d~vV~SPGI~~~~p~l~~-a~~~gi~vis--eiel~  110 (476)
T PRK00141         77 YSIVVTSPGWRPDSPLLVD-AQSAGLEVIG--DVELA  110 (476)
T ss_pred             CCEEEECCCCCCCCHHHHH-HHHCCCCEEE--HHHHH
T ss_conf             9999989978997999999-9987995771--99999


No 185
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=64.59  E-value=9.5  Score=17.29  Aligned_cols=51  Identities=12%  Similarity=0.041  Sum_probs=36.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             4555057752678818999999998630244246511787631000241013
Q gi|254780943|r  336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      .+-+++|.+--|+.+.-.-.-.+.|+++|++++ +.|-..+++...+|.+|.
T Consensus       170 ~~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iiN~~~T~~D~~adl~I~  220 (222)
T cd01413         170 KEADLFIVLGSSLVVYPANLLPLIAKENGAKLV-IVNADETPFDYIADLVIQ  220 (222)
T ss_pred             HCCCEEEEECCCCEEHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCEEEE
T ss_conf             739989997878645216578999997699199-989999999844228983


No 186
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain.  The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation  for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=63.13  E-value=10  Score=17.11  Aligned_cols=68  Identities=15%  Similarity=0.103  Sum_probs=35.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf             036543079999999986256673143042010012334455505775267881899999999863--024424651178
Q gi|254780943|r  297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRT--QGLTIGSLVNVL  374 (608)
Q Consensus       297 GcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~--~g~~tiaItN~~  374 (608)
                      |+|||--.+-.-+-.+.+ .++.+.|...+-   .+ ...+.++|  |+|-+       ..+.||+  -++..++|.|-.
T Consensus        10 GmGSSaMgas~lrk~lk~-~gl~i~V~n~aI---~~-lp~dadlV--Vt~~~-------L~~rAk~~~p~a~~i~v~nfL   75 (87)
T cd05567          10 GMGSSAMGASVLRKKLKK-AGLEIPVTNSAI---DE-LPSDADLV--VTHAS-------LTDRAKKKAPQAQHLSVDNFL   75 (87)
T ss_pred             CCCHHHHHHHHHHHHHHH-CCCCCEEEEEEH---HH-CCCCCCEE--EEHHH-------HHHHHHHHCCCCEEEEHHHHC
T ss_conf             985899999999999998-499836998016---54-99864388--86699-------999999768998899658725


Q ss_pred             CCCC
Q ss_conf             7631
Q gi|254780943|r  375 ESTI  378 (608)
Q Consensus       375 ~S~l  378 (608)
                      +++-
T Consensus        76 ~~~~   79 (87)
T cd05567          76 NTPE   79 (87)
T ss_pred             CCHH
T ss_conf             8877


No 187
>pfam05198 IF3_N Translation initiation factor IF-3, N-terminal domain.
Probab=62.76  E-value=10  Score=17.06  Aligned_cols=49  Identities=16%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             CEEEEECCCCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             505775267881---8999999998630244246511787631000241013
Q gi|254780943|r  339 WASLFISQSGET---ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       339 tlvI~iSQSGeT---~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      .-|-.|...|+-   ..+-+|++.|++.|.-.+-|..+.+-|+.|..|+.-+
T Consensus        13 ~~VrlI~~~G~~lGv~~~~eAl~~A~~~~LDLV~vs~~a~PPVcki~DygK~   64 (76)
T pfam05198        13 REVRLIDEDGEQLGVVSRAEALRLAEEKGLDLVEISPNADPPVCKIMDYGKF   64 (76)
T ss_pred             CEEEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHH
T ss_conf             9999988999296617699999999984996899899999988899627118


No 188
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=60.45  E-value=10  Score=17.08  Aligned_cols=15  Identities=13%  Similarity=0.541  Sum_probs=6.6

Q ss_pred             HHHHHHCCCEEEEEEC
Q ss_conf             9999827980899956
Q gi|254780943|r  532 IQEIVTRGGRVIFITD  547 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~~  547 (608)
                      +++++ -||+.++.-.
T Consensus       160 ~~QL~-~gGrLV~Pvg  174 (205)
T PRK13944        160 VRQLK-DGGVLVIPVE  174 (205)
T ss_pred             HHHCC-CCCEEEEEEC
T ss_conf             98548-7979999987


No 189
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=60.09  E-value=2.9  Score=20.83  Aligned_cols=39  Identities=21%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             CCEEEEEE--CCC---HHHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             87189994--480---1468-899999999827980899956532
Q gi|254780943|r  512 GTFVIAIA--PYD---RFFQ-KTLSNIQEIVTRGGRVIFITDEEG  550 (608)
Q Consensus       512 ~~~vi~i~--~~~---~~~~-k~~s~~~Ei~arg~~vi~I~~~~~  550 (608)
                      +.|.+++.  |+.   +.-| ...+++.++|+||+.|++||....
T Consensus       483 G~P~lvvLDEPNsNLD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~  527 (556)
T TIGR01842       483 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS  527 (556)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             798378732889876617899999999999867972899841068


No 190
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs.  Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=59.96  E-value=11  Score=16.74  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76310002410136742001100078889999999-----9-99999776212001577632279998759999999997
Q gi|254780943|r  375 ESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQN  448 (608)
Q Consensus       375 ~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~  448 (608)
                      +....+.-|..+-++|-+|.+-|||  ||+.++.-     | -++..++-..|-+..-.-++.++-|..+-+.+..  ..
T Consensus       217 ~~~~~~~ld~~liLHADHE~gNaST--ft~rvv~St~sD~ysaisAai~aL~GPLHGGANe~Vl~ml~~i~~~~g~--~~  292 (426)
T cd06103         217 DEEFTDLMRLYLTLHSDHEGGNVSA--HTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGK--DV  292 (426)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CC
T ss_conf             8289999999998964314887205--7776663468879999999988715887677289999999999987288--88


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             677446779874203614552136
Q gi|254780943|r  449 IYSQIEKLCCGLAKCQTLLYVGRG  472 (608)
Q Consensus       449 ~~~~i~~~a~~~~~~~~~~~lG~G  472 (608)
                      ..+.++++.++..+.+.. +.|-|
T Consensus       293 s~e~v~~~v~~~l~~~~~-imGfG  315 (426)
T cd06103         293 SDEELEKYIWDTLNSGRV-VPGYG  315 (426)
T ss_pred             CHHHHHHHHHHHHHCCCC-CCCCC
T ss_conf             889999999998716994-32678


No 191
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636   This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC)  and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=59.53  E-value=11  Score=16.73  Aligned_cols=15  Identities=27%  Similarity=0.421  Sum_probs=10.3

Q ss_pred             EEECCCCHHHHHHHH
Q ss_conf             521366449999999
Q gi|254780943|r  468 YVGRGSSYPLALEGA  482 (608)
Q Consensus       468 ~lG~G~~y~~A~EgA  482 (608)
                      +=|+|+..|+.++..
T Consensus       337 VRG~GLmlG~e~~~~  351 (402)
T TIGR00707       337 VRGKGLMLGIELEAP  351 (402)
T ss_pred             EECCEEEEEEEECCC
T ss_conf             323123465564278


No 192
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=59.44  E-value=10  Score=17.07  Aligned_cols=15  Identities=13%  Similarity=0.434  Sum_probs=7.0

Q ss_pred             HHHHHHCCCEEEEEEC
Q ss_conf             9999827980899956
Q gi|254780943|r  532 IQEIVTRGGRVIFITD  547 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~~  547 (608)
                      ++++ +-||+.++...
T Consensus       162 ~~qL-~~gGrLV~Pig  176 (213)
T PRK00312        162 LDQL-AEGGILVAPIG  176 (213)
T ss_pred             HHHC-CCCCEEEEEEC
T ss_conf             9845-32979999980


No 193
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=58.81  E-value=12  Score=16.60  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             HHHHHHHCCCCC--EEEECCHHHCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999986256673--143042010012--334455505775267881899999999863024424651
Q gi|254780943|r  309 KFWFERLARLKV--EIDVSSEFRYRD--FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV  371 (608)
Q Consensus       309 ~~~~e~~~~i~v--~v~~asEf~y~~--~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt  371 (608)
                      .-|++++.....  .|.---||...+  ..+..+-.||.|.-.-++.-|-+.+++||++|+.|++--
T Consensus        75 v~Fi~rl~~~~f~r~V~a~pE~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~  141 (217)
T COG4015          75 VDFIKRLGRVHFGRRVEAFPENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTISTN  141 (217)
T ss_pred             HHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             8999984757877412036332560105564388899995489854107999999997096476238


No 194
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=57.52  E-value=12  Score=16.46  Aligned_cols=14  Identities=29%  Similarity=0.698  Sum_probs=7.2

Q ss_pred             HHHHHHCCCEEEEEE
Q ss_conf             999982798089995
Q gi|254780943|r  532 IQEIVTRGGRVIFIT  546 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~  546 (608)
                      +++++ -||+.++.-
T Consensus       160 ~~qL~-~gGrLv~pv  173 (205)
T pfam01135       160 IDQLK-EGGRLVIPV  173 (205)
T ss_pred             HHHCC-CCCEEEEEE
T ss_conf             99628-797899998


No 195
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818   Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes.   Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected.   This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=56.75  E-value=13  Score=16.37  Aligned_cols=38  Identities=21%  Similarity=0.075  Sum_probs=23.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             55057752678818999999998630244246511787
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      +=+|-+=.|+|-|+|++.|+=.-.-..-.-+-+||+.+
T Consensus       110 ~ivVmGGt~PGhtTDAVAA~lAE~~~ad~L~~~TnVDG  147 (232)
T TIGR02076       110 KIVVMGGTEPGHTTDAVAALLAEFLEADLLINATNVDG  147 (232)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             87986687898528999999976626872699822685


No 196
>TIGR01694 MTAP methylthioadenosine phosphorylase; InterPro: IPR010044   This entry represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterised and its crystal structure has been described , . A misleading characterisation is found for a Sulfolobus solfataricus enzyme  which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme . This explains the finding that the characterised enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this misnaming of this enzyme has been carried forward to several publications including a crystal structure . Related sequences include: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilise the MTA/SAH nucleotidase enzyme and a kinase to do this reaction; and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbour-joining trees) and lacks some of the conserved active site residues. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=56.08  E-value=9.9  Score=17.16  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC
Q ss_conf             3445550577526788189999999986302-4424651178763100024101
Q gi|254780943|r  334 VYSSKWASLFISQSGETADTLASLRYMRTQG-LTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       334 ~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g-~~tiaItN~~~S~la~~aD~~i  386 (608)
                      ..+..+++.+.- -|==-+|.+=.++.|+-| +.+|+.|+.|+-.||||++..-
T Consensus       166 ~~~~G~~~yvc~-eGPRFsT~AEs~~~~~~Gk~~~vGMT~~PEa~LARElel~Y  218 (263)
T TIGR01694       166 VHDGGDLTYVCT-EGPRFSTRAESRLFKSWGKADVVGMTGLPEAVLARELELCY  218 (263)
T ss_pred             EEECCCEEEEEE-ECCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHH
T ss_conf             787587899983-16876738999999981287575265268999987405567


No 197
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=56.07  E-value=13  Score=16.30  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=15.5

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             56551035203654307999999
Q gi|254780943|r  288 ANISGLLVSSCGTSYLAGLVGKF  310 (608)
Q Consensus       288 ~~~~~I~~vGcGTSy~Aal~~~~  310 (608)
                      +.-++|+=||+||-|+||+.++.
T Consensus        74 ~pg~rVLEIGTGSGYqAAlLA~L   96 (317)
T PRK13943         74 DKGMRVLEIGGGTGYNAAVMSRV   96 (317)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHH
T ss_conf             99986899657743899999998


No 198
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=55.64  E-value=13  Score=16.25  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=16.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             50577526788189999999986302442465117876310002410
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFI  385 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~  385 (608)
                      +++|.|--|+...-.-.-++.++++|++++ +.|-..++....+|.+
T Consensus       169 DlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iiN~~~t~~d~~ad~~  214 (218)
T cd01407         169 DLLLVIGTSLQVYPAAGLPLYAPERGAPVV-IINLEPTPADRKADLV  214 (218)
T ss_pred             CEEEEECCCCEECCHHHHHHHHHHCCCCEE-EECCCCCCCCCEEEEE
T ss_conf             979995678576327789999997699199-9879999998710289


No 199
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=55.27  E-value=14  Score=16.21  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             577526788189999999986302442465117
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNV  373 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~  373 (608)
                      +++-|.||.|+=+-..++..+++|.++-.|=..
T Consensus         6 ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~   38 (159)
T cd03116           6 FVGYSGSGKTTLLEKLIPALSARGLRVAVIKHD   38 (159)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             996799999999999999999779859899734


No 200
>CHL00067 rps2 ribosomal protein S2
Probab=54.36  E-value=14  Score=16.12  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             505775267881899999999863024424651178763100024101367
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      +++|.+.+.-|..    |++.|++.|.+++||+++-..|  ...|+.||.+
T Consensus       159 d~iii~d~~~e~~----ai~Ea~kL~IPvIaivDTn~~p--~~idypIP~N  203 (227)
T CHL00067        159 DIVIIVDQQEEYT----ALRECIKLGIPTISIVDTNCDP--DLADIPIPAN  203 (227)
T ss_pred             CEEEEECCCCCHH----HHHHHHHCCCCEEEEEECCCCC--CCCCEEEECC
T ss_conf             7699967753379----9999987599989996389997--7577675378


No 201
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=53.96  E-value=14  Score=16.07  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf             677999999887512220100-4687238999749960776089613661376
Q gi|254780943|r  142 KETMQKLMQCLTGSYSIAVIF-EDDPHSIIVARKGPPLIIGHGEGEMFVGSDV  193 (608)
Q Consensus       142 ~~ai~~~~~~l~G~ya~~il~-~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~  193 (608)
                      .||+..++|-.+ .|+.-.-. .++.-+|+++. |.  +-|++=+..-.|||.
T Consensus       111 aEAvEtA~KLAR-~WgY~~K~ip~~kA~ii~~~-GN--FhGRTlgA~S~Std~  159 (426)
T TIGR01885       111 AEAVETALKLAR-KWGYEVKGIPRNKAKIIAAS-GN--FHGRTLGAVSASTDS  159 (426)
T ss_pred             HHHHHHHHHHHH-HHCCCCCCCCCCCEEEEEEC-CC--CCCHHHHHHHHCCCC
T ss_conf             347999999999-74413578557623899853-88--733035443202672


No 202
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549   This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=53.78  E-value=8.6  Score=17.60  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHH
Q ss_conf             7526788189999999986302442465117876310002410136----742001100078889
Q gi|254780943|r  343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI----KAGPEIGVASTKAFT  403 (608)
Q Consensus       343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~----~aG~Ei~VasTKsft  403 (608)
                      .|..=||=+  ++.+|.|++.|..|+|+=    |+..|.+-++..=    +.||-   +|.|||.
T Consensus         6 lIANRGEIA--~RIiRAC~ElGi~TVAVy----S~aD~dalHV~LADEavCIGea---~S~kSYL   61 (451)
T TIGR00514         6 LIANRGEIA--LRIIRACKELGIATVAVY----STADRDALHVLLADEAVCIGEA---PSAKSYL   61 (451)
T ss_pred             EEECCHHHH--HHHHHHHHHCCCCEEEEC----CHHHHHHHHHHHHCCCCCCCCC---HHHCCCC
T ss_conf             995260678--899998886498639860----0441332343430253006862---2112441


No 203
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=53.61  E-value=6.3  Score=18.54  Aligned_cols=142  Identities=21%  Similarity=0.302  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCC
Q ss_conf             99999887512220100468723899974996077608961366137620111110379827651889730574100333
Q gi|254780943|r  146 QKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQ  225 (608)
Q Consensus       146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~  225 (608)
                      -.++..+.+-|-.+-|+...|+.  +||   |+       +.|-||+..+.--.--++      |+..|-.-|+...+.+
T Consensus        32 m~~I~qLi~rYn~vSmdTEFpGv--vAr---Pi-------G~FkSs~dyhYQtlraNV------D~LkiIQlGlsLSDe~   93 (299)
T COG5228          32 MAVIRQLISRYNHVSMDTEFPGV--VAR---PI-------GTFKSSVDYHYQTLRANV------DFLKIIQLGLSLSDEN   93 (299)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCE--EEC---CC-------CCCCCCCHHHHHHHHCCC------CHHHHHHEEEEECCCC
T ss_conf             99999999757800431556740--302---43-------334354227889886051------0320200000410302


Q ss_pred             CCCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECC------
Q ss_conf             22210001100012100001407899999974178999998715747664521111000023565510352036------
Q gi|254780943|r  226 GYEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCG------  299 (608)
Q Consensus       226 ~~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcG------  299 (608)
                      |++   +.-...|..      +|.+=..|||+-| +.+.-+...+++...... .++...++.+    +++++|      
T Consensus        94 GN~---P~~~sTWQF------NF~F~l~~dmya~-ESieLL~ksgIdFkkHe~-~GI~v~eF~e----lLm~SGLvm~e~  158 (299)
T COG5228          94 GNK---PNGPSTWQF------NFEFDLKKDMYAT-ESIELLRKSGIDFKKHEN-LGIDVFEFSE----LLMDSGLVMDES  158 (299)
T ss_pred             CCC---CCCCCEEEE------EEEECCHHHHCCH-HHHHHHHHCCCCHHHHHH-CCCCHHHHHH----HHHCCCCEECCC
T ss_conf             999---999732688------8875501200356-889999980887556766-3978999999----986267232141


Q ss_pred             ---CCCCHHHHHHHHHHHHCCCCC
Q ss_conf             ---543079999999986256673
Q gi|254780943|r  300 ---TSYLAGLVGKFWFERLARLKV  320 (608)
Q Consensus       300 ---TSy~Aal~~~~~~e~~~~i~v  320 (608)
                         -+||+|.--.|++.-++..|.
T Consensus       159 VtWitfHsaYDfgyLikilt~~pl  182 (299)
T COG5228         159 VTWITFHSAYDFGYLIKILTNDPL  182 (299)
T ss_pred             EEEEEEECCHHHHHHHHHHHCCCC
T ss_conf             579995210008999999836988


No 204
>PRK07574 formate dehydrogenase; Provisional
Probab=52.86  E-value=11  Score=16.89  Aligned_cols=28  Identities=11%  Similarity=0.081  Sum_probs=23.6

Q ss_pred             CCEECCHHHHHHHHHHCCCEEEECCCHH
Q ss_conf             6815068999899997898897247615
Q gi|254780943|r   98 NGIIENFSRLKKEHFSSQQVFLTETDTE  125 (608)
Q Consensus        98 NG~I~N~~elr~~l~~~g~~f~s~tDsE  125 (608)
                      =|.++|-.-||+.|+.+||.+...+|.+
T Consensus        51 lg~~~~elglr~~le~~gh~~v~t~dk~   78 (385)
T PRK07574         51 LGSVSGELGLRTFLEERGHELVVTSDKD   78 (385)
T ss_pred             EEECCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf             2223330105888985591699965888


No 205
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=52.65  E-value=15  Score=15.93  Aligned_cols=14  Identities=50%  Similarity=0.902  Sum_probs=11.0

Q ss_pred             HHHHCCCCCHHHCC
Q ss_conf             42211442324314
Q gi|254780943|r  489 SYLHAEGYAAGELK  502 (608)
Q Consensus       489 syihaeg~~agE~k  502 (608)
                      .+||++||.+||+|
T Consensus        88 G~iWa~Gy~sgelk  101 (229)
T COG4229          88 GMIWAHGYESGELK  101 (229)
T ss_pred             HHHHHHCCCCCCCC
T ss_conf             68987204457504


No 206
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.99  E-value=15  Score=15.86  Aligned_cols=39  Identities=18%  Similarity=0.108  Sum_probs=28.5

Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999863024424651178763100024101367420011
Q gi|254780943|r  356 SLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIG  395 (608)
Q Consensus       356 Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~  395 (608)
                      .+..+|++|++++.|- -.-|..++.+|..|++..|-+.+
T Consensus       185 ~~~~ak~~GaklIvID-Pr~t~ta~~AD~wl~irPGTD~A  223 (523)
T cd02757         185 RIWGGKMDQAKVVVVD-PRLSNTAAKADEWLPIKPGEDGA  223 (523)
T ss_pred             HHHHHHHCCCEEEEEC-CCCCHHHHHHHCCCCCCCCCHHH
T ss_conf             9999986798599971-63472788863235878897799


No 207
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=51.33  E-value=16  Score=15.79  Aligned_cols=48  Identities=19%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCC
Q ss_conf             77526788189999999986302442465117876--310002410136742
Q gi|254780943|r  342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLES--TIARESDFIFPIKAG  391 (608)
Q Consensus       342 I~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S--~la~~aD~~i~~~aG  391 (608)
                      |.|--.||.  .+++++.+|+.|..+++|-.++++  +-.+.+|..+.+..|
T Consensus         4 vLIanrGei--A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~   53 (109)
T pfam00289         4 VLVANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPG   53 (109)
T ss_pred             EEEECCCHH--HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCC
T ss_conf             999888799--99999999986997999963344152256650576534799


No 208
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=51.31  E-value=14  Score=16.10  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8999999998630244246511787
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      .-++++++.+|+.|...+.|||-.|
T Consensus        29 ~Gv~~~l~~~K~~Gy~L~lvTNQSG   53 (178)
T TIGR00213        29 DGVIDALRELKKLGYKLVLVTNQSG   53 (178)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             6699999998745827889874565


No 209
>pfam09147 DUF1933 Domain of unknown function (DUF1933). Members of this family are predominantly found in carbapenam synthetase, and are composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined.
Probab=51.26  E-value=16  Score=15.79  Aligned_cols=77  Identities=13%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             CCEECCHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--C
Q ss_conf             6815068999899997-898897247615678887634320010267799999988751222010046872389997--4
Q gi|254780943|r   98 NGIIENFSRLKKEHFS-SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR--K  174 (608)
Q Consensus        98 NG~I~N~~elr~~l~~-~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar--~  174 (608)
                      =|.|+|-.-||.-... +|. -..-+|.|++..+..++   |       ..++..-+|.|+|-+=++  .+.+.+..  +
T Consensus        54 IGsiyNr~~L~~lag~~eg~-a~v~nD~ElL~~i~~~l---G-------~~aL~LAEGdfcffiEdk--ng~L~liTds~  120 (201)
T pfam09147        54 IGSLYNKRLLRHLAGHFEGG-VPVVNDAEILYLISTQL---G-------SAALGLAEGDFCFFIEDR--NGTLTVITESR  120 (201)
T ss_pred             EEEECCHHHHHHHHHEEECC-CEEECCHHHHHHHHHHH---H-------HHHHHHHCCCEEEEEECC--CCCEEEEECCC
T ss_conf             98740188999865215266-23335188999999986---0-------455544147468999658--97389996578


Q ss_pred             C-CCEEEECCCCCE
Q ss_conf             9-960776089613
Q gi|254780943|r  175 G-PPLIIGHGEGEM  187 (608)
Q Consensus       175 g-sPL~iG~~~~~~  187 (608)
                      | +|.++=+.+.-|
T Consensus       121 G~~pv~lV~~~~~W  134 (201)
T pfam09147       121 GQNPVYLVQAGDRW  134 (201)
T ss_pred             CCCEEEEEECCCEE
T ss_conf             98617998248778


No 210
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=51.20  E-value=12  Score=16.53  Aligned_cols=84  Identities=26%  Similarity=0.344  Sum_probs=49.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC-CCCCEE------------------------EECCHHHCC-CCCC-CCCCEEEE
Q ss_conf             51035203654307999999998625-667314------------------------304201001-2334-45550577
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLA-RLKVEI------------------------DVSSEFRYR-DFVY-SSKWASLF  343 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~-~i~v~v------------------------~~asEf~y~-~~~~-~~~tlvI~  343 (608)
                      ..|+++|.|+|   +|.+.||+-+-. .+.|-+                        ..|.||+.. ..+. +.++ ...
T Consensus        22 ~DViiVGAGpS---GLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv~~pA~~~L~e~gI~~~d~~d-g~~   97 (283)
T TIGR00292        22 SDVIIVGAGPS---GLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVVEKPAKEILDEFGIRYEDEGD-GYV   97 (283)
T ss_pred             CCEEEECCCCC---HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCEEECCC-CEE
T ss_conf             06679878974---66899999842998069998511026898664222456136514046888865981335688-548


Q ss_pred             ECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
Q ss_conf             526788189999999986302-44246511787631000
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQG-LTIGSLVNVLESTIARE  381 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g-~~tiaItN~~~S~la~~  381 (608)
                      |..|=|-..|+.+  .|=+.| ++.+--+.+++ -+.|.
T Consensus        98 Vads~e~~s~l~s--~a~~aGn~Ki~~~~~vED-l~~R~  133 (283)
T TIGR00292        98 VADSAEFISTLAS--KALQAGNAKIFNGVSVED-LILRD  133 (283)
T ss_pred             EEHHHHHHHHHHH--HHHCCCCCEEEEEEEEEE-EEECC
T ss_conf             7236768999999--986588731433368887-78768


No 211
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs.  Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=51.19  E-value=16  Score=15.78  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310002410136742001100078889999999-----9-9999977621200157763227999875999999999767
Q gi|254780943|r  377 TIARESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIY  450 (608)
Q Consensus       377 ~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~  450 (608)
                      ...+.-|..+-++|-+|=+-|||  ||+.++.-     | -++..++-..|-+..-.-++.++-|..+-+.+...  ..+
T Consensus       219 ~~~~~l~l~liLHADHeG~N~St--ft~rvv~StlsD~Yssiaaai~aL~GPLHGgANq~Vl~~l~~m~~~ig~~--~~~  294 (428)
T cd06106         219 DFVDLLRLYIALHGDHEGGNVSA--HTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSK--ATD  294 (428)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC--CCH
T ss_conf             99999999898862136887317--77766634788689999998887268765775899999999999980898--768


Q ss_pred             HHHHHHHHHHHCCCCEEEEECC--------CCHHHHHHHHHHH
Q ss_conf             7446779874203614552136--------6449999999999
Q gi|254780943|r  451 SQIEKLCCGLAKCQTLLYVGRG--------SSYPLALEGALKI  485 (608)
Q Consensus       451 ~~i~~~a~~~~~~~~~~~lG~G--------~~y~~A~EgALKl  485 (608)
                      +.++++..+..+.+.. +.|.|        +=+.+-+|-|.|.
T Consensus       295 e~v~~yv~~~l~~g~~-i~GfGHrVyk~~DPRa~~lk~~a~~~  336 (428)
T cd06106         295 QDIRDYLWKTLKSGRV-VPGYGHAVLRKPDPRFTALMEFAQTR  336 (428)
T ss_pred             HHHHHHHHHHHCCCCE-EECCCEECCCCCCCHHHHHHHHHHHH
T ss_conf             9999999985446986-32026010357994799999999998


No 212
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=49.79  E-value=16  Score=15.66  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf             5057752678818999999998630-244246511787
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQ-GLTIGSLVNVLE  375 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~-g~~tiaItN~~~  375 (608)
                      ..+|..|+||.|+-     ..+|-+ .++++++|.++.
T Consensus        18 kaIv~~T~sG~tA~-----~iS~~RP~~pI~a~T~~~~   50 (117)
T pfam02887        18 KAIVVLTESGRTAR-----LVSKYRPGAPIIAVTPNEG   50 (117)
T ss_pred             CEEEEECCCCHHHH-----HHHHHCCCCCEEEECCCHH
T ss_conf             99999889877999-----9995499986899659989


No 213
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=49.63  E-value=17  Score=15.62  Aligned_cols=92  Identities=13%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             356551035203654307999999998625---66731430420100123344555057752678818999999998630
Q gi|254780943|r  287 FANISGLLVSSCGTSYLAGLVGKFWFERLA---RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQ  363 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~---~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~  363 (608)
                      +++.+++.++--+-|+|.--..+. |++++   ++...+.  .+  +.+..+.+.++.|.+++    .|.+..++.+|++
T Consensus       114 lkkYkkl~lv~~~~~~~p~~~~~g-f~~Fc~~~~~~~~i~--~~--~~~~~i~kg~~yi~~~d----~dlv~vik~~~~~  184 (247)
T cd06276         114 LKKYKKLILVFPNKTAIPKEIKRG-FERFCKDYNIETEII--ND--YENREIEKGDLYIILSD----TDLVFLIKKARES  184 (247)
T ss_pred             HHCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHCCCEEEE--EC--CCCCEEECCEEEEEECH----HHHHHHHHHHHHC
T ss_conf             732128999918998897899999-999999709854643--12--46640405629999771----8999999999984


Q ss_pred             CCCE---EEEECCCCCCCCCCCCCCCC
Q ss_conf             2442---46511787631000241013
Q gi|254780943|r  364 GLTI---GSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       364 g~~t---iaItN~~~S~la~~aD~~i~  387 (608)
                      |..+   ++|..--+.++++..+-.+-
T Consensus       185 gl~ip~DisiIgfdd~~~~~~~~p~LT  211 (247)
T cd06276         185 GLLLGKDIGIISYNDTPLKEILRNGIT  211 (247)
T ss_pred             CCCCCCCEEEEEECCHHHHHHCCCCCE
T ss_conf             999987369997577428974589861


No 214
>KOG3459 consensus
Probab=49.04  E-value=11  Score=16.75  Aligned_cols=29  Identities=21%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CCCCHHHCCCCCHHHH----CCCCEEEEEECCC
Q ss_conf             4423243144637880----7987189994480
Q gi|254780943|r  494 EGYAAGELKHGPIALI----TEGTFVIAIAPYD  522 (608)
Q Consensus       494 eg~~agE~kHGP~ali----~~~~~vi~i~~~~  522 (608)
                      |--..+||.|||++++    +..++|++.+-++
T Consensus        14 ~~~e~~ef~~Gpls~~~~~~~~~~~vLi~cRnn   46 (114)
T KOG3459          14 EVPEEEEFNTGPLSVLPASVKNNTQVLINCRNN   46 (114)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf             153334468686136477764285068883244


No 215
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=47.96  E-value=12  Score=16.50  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=9.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             788189999999986302442465
Q gi|254780943|r  347 SGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       347 SGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      .|.|+  +.+.+.|++.|+..+.+
T Consensus       331 GGNtA--mD~ARTA~RlGA~~Vti  352 (652)
T PRK12814        331 GGNTA--IDAARTALRLGAESVTI  352 (652)
T ss_pred             CCCHH--HHHHHHHHHCCCCEEEE
T ss_conf             88138--99999998748975899


No 216
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478     Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor.    This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=47.59  E-value=18  Score=15.41  Aligned_cols=114  Identities=22%  Similarity=0.357  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHH--HHHHHCCCCCH-HHCCCCCHHHH--CCCCEEEEEECCCHH--HHHHHHHHHHHHHCCCEE------
Q ss_conf             999999999999--74221144232-43144637880--798718999448014--688999999998279808------
Q gi|254780943|r  476 PLALEGALKIKE--ISYLHAEGYAA-GELKHGPIALI--TEGTFVIAIAPYDRF--FQKTLSNIQEIVTRGGRV------  542 (608)
Q Consensus       476 ~~A~EgALKlkE--~syihaeg~~a-gE~kHGP~ali--~~~~~vi~i~~~~~~--~~k~~s~~~Ei~arg~~v------  542 (608)
                      |+=+=+.|...+  -+|.+|.+.++ .-|+   +|+-  ..+.|.+++.++..+  .|++.+.++++ +|||+|      
T Consensus       482 P~EqLa~LRa~PN~~vwRP~D~~E~aaa~~---~a~~kas~~~Pt~L~LtRQnLp~l~~T~~~~~~~-~KGgYv~~d~~~  557 (675)
T TIGR00232       482 PIEQLASLRAIPNLSVWRPADGNETAAAYK---YALEKASQDAPTVLILTRQNLPQLERTESSLEKV-LKGGYVLKDSKG  557 (675)
T ss_pred             CHHHHHHHHHCCCCEEECCCCCHHHHHHHH---HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH-HCCCCEEECCCC
T ss_conf             022302332203531623787327899999---9999620589807998057777766427899986-339807872587


Q ss_pred             ----EEEECCCCC---------CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             ----999565321---------000134662798688781566589999999999999998387798897986475379
Q gi|254780943|r  543 ----IFITDEEGL---------KRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE  608 (608)
Q Consensus       543 ----i~I~~~~~~---------~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE  608 (608)
                          |+|++....         ...+...+.++-+|..+-+.        -|=-+|.-++.       |.|-.|-||||
T Consensus       558 ~Pd~iliAtGSEV~La~~a~~~L~~~~~kvrVVS~P~~~~f~--------~Qd~~Y~~svl-------p~~V~k~~~~E  621 (675)
T TIGR00232       558 EPDIILIATGSEVQLAVEAAKKLAAENIKVRVVSMPSFDLFD--------KQDEEYRESVL-------PANVTKRLAIE  621 (675)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--------HCCHHHHHHHC-------CCHHHHHHHHH
T ss_conf             940899852736899999999998549857999658646666--------12289887307-------20123546653


No 217
>KOG0830 consensus
Probab=46.66  E-value=15  Score=15.90  Aligned_cols=60  Identities=20%  Similarity=0.147  Sum_probs=40.8

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999863024424651178763100024101367420011000788899999999999997762120015
Q gi|254780943|r  355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINE  425 (608)
Q Consensus       355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~  425 (608)
                      .++..+---+.+|+++||+. |+| +..|..++++-         |+-.+-.+..+||+-...+++|.++.
T Consensus       103 q~~~E~s~~n~p~ialcnTD-SpL-~~VDIAIPcNN---------KG~hSVgl~ww~LareVLrmrgtis~  162 (254)
T KOG0830         103 QPLTEASYVNLPTIALCNTD-SPL-CYVDIAIPCNN---------KGAHSVGVMWWMLAREVLRMRGTISR  162 (254)
T ss_pred             HHHHHHHHCCCCEEEEECCC-CCC-CEEEEEEECCC---------CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             03444420477448874488-841-00133311378---------87522001445412799998754344


No 218
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.49  E-value=8.7  Score=17.54  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=23.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHC---CCCCEEEECCHHHCC
Q ss_conf             03654307999999998625---667314304201001
Q gi|254780943|r  297 SCGTSYLAGLVGKFWFERLA---RLKVEIDVSSEFRYR  331 (608)
Q Consensus       297 GcGTSy~Aal~~~~~~e~~~---~i~v~v~~asEf~y~  331 (608)
                      |+|-|+.|++.++|+..+-.   .+++++..++=..|+
T Consensus        13 GVGKS~va~~LaQY~~~~~~~~~~iDTDpvN~tf~~yk   50 (241)
T PRK13886         13 GVGKSMIAATIAQYKAGKGQKPLCIDTDPVNATFEGYK   50 (241)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCC
T ss_conf             63099999999999983599985560899970534214


No 219
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=46.47  E-value=5.7  Score=18.82  Aligned_cols=12  Identities=33%  Similarity=0.313  Sum_probs=8.4

Q ss_pred             EEEEECCCCCCH
Q ss_conf             057752678818
Q gi|254780943|r  340 ASLFISQSGETA  351 (608)
Q Consensus       340 lvI~iSQSGeT~  351 (608)
                      -+-+.-+||.|.
T Consensus       334 Pik~FDrSGwty  345 (516)
T PRK00960        334 PIKFFDKSGWTY  345 (516)
T ss_pred             CEEEEECCCCEE
T ss_conf             657885588626


No 220
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=45.12  E-value=10  Score=17.04  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=40.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             57752678818999999998630244246511787631000241013
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      -+.+..+|=.-+|-.=.+..|..|+.+++.|++|+-.|||++....-
T Consensus       173 GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya  219 (262)
T COG0005         173 GVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVA  219 (262)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf             38998328876899999999985888135767848787676278178


No 221
>pfam00585 Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase. Threonine dehydratases pfam00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the pfam01842 domain.
Probab=44.86  E-value=19  Score=15.13  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=11.9

Q ss_pred             CHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf             689998999978988972476156
Q gi|254780943|r  103 NFSRLKKEHFSSQQVFLTETDTEV  126 (608)
Q Consensus       103 N~~elr~~l~~~g~~f~s~tDsEv  126 (608)
                      +..+|.+.|...|+.+.-.||.|+
T Consensus        63 e~~~l~~~L~~~gy~~~dls~ne~   86 (91)
T pfam00585        63 DLDEFIERLEKLGYDYVDLSDNEA   86 (91)
T ss_pred             HHHHHHHHHHHCCCCEEECCCCHH
T ss_conf             999999999975998088879999


No 222
>KOG1184 consensus
Probab=44.81  E-value=19  Score=15.12  Aligned_cols=10  Identities=30%  Similarity=0.444  Sum_probs=5.6

Q ss_pred             CEEEECCCCC
Q ss_conf             6077608961
Q gi|254780943|r  177 PLIIGHGEGE  186 (608)
Q Consensus       177 PL~iG~~~~~  186 (608)
                      |-+||.--+.
T Consensus       162 PVYi~vP~n~  171 (561)
T KOG1184         162 PVYIGVPANL  171 (561)
T ss_pred             CEEEECCCCC
T ss_conf             8599821430


No 223
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=44.54  E-value=19  Score=15.18  Aligned_cols=38  Identities=18%  Similarity=0.169  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf             68899999999827980899956532100013466279868
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP  565 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP  565 (608)
                      .......+++++.+|..+++++.+..  ..+. ++.++.+-
T Consensus       125 ~~~l~~~l~~l~~~g~TvI~vtHd~~--~~~~-aDrii~l~  162 (176)
T cd03238         125 INQLLEVIKGLIDLGNTVILIEHNLD--VLSS-ADWIIDFG  162 (176)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHH--HHHH-CCEEEEEC
T ss_conf             99999999999987998999947879--9983-99999945


No 224
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.10  E-value=16  Score=15.69  Aligned_cols=14  Identities=29%  Similarity=0.679  Sum_probs=6.4

Q ss_pred             HHHHHHCCCEE-EEEE
Q ss_conf             99998279808-9995
Q gi|254780943|r  532 IQEIVTRGGRV-IFIT  546 (608)
Q Consensus       532 ~~Ei~arg~~v-i~I~  546 (608)
                      +++++. ||+. +.+.
T Consensus       156 l~QL~~-gGrlv~PvG  170 (209)
T COG2518         156 LDQLKP-GGRLVIPVG  170 (209)
T ss_pred             HHHCCC-CCEEEEEEC
T ss_conf             985065-988999985


No 225
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=44.04  E-value=20  Score=15.04  Aligned_cols=110  Identities=16%  Similarity=0.241  Sum_probs=64.5

Q ss_pred             CCEEEEECCEECC--HHHHHHHHHHCCC-EEEE------------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             8899997681506--8999899997898-8972------------47615678887634320010267799999988751
Q gi|254780943|r   91 EGIAVTHNGIIEN--FSRLKKEHFSSQQ-VFLT------------ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        91 ~~~~vvHNG~I~N--~~elr~~l~~~g~-~f~s------------~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      .-++++||=++.=  |.|+|+++-++-. -|.|            .+||-     |+    +    ..+|+.-+++++-|
T Consensus        56 PTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAYvP~~Dty-----IE----K----daSINdeIerlR~S  122 (667)
T TIGR00631        56 PTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTY-----IE----K----DASINDEIERLRLS  122 (667)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE-----EE----C----CCCHHHHHHHHHHH
T ss_conf             84998577767999999998638677245255203237873214798841-----30----4----55300467677889


Q ss_pred             HHHHHHCCCCCCEEEEEE------CCCC-----EEEECCCCCEE----EECCCCCCCCCCCEEEECCC------CEEEEE
Q ss_conf             222010046872389997------4996-----07760896136----61376201111103798276------518897
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVAR------KGPP-----LIIGHGEGEMF----VGSDVTALTLLTDKVTYMED------GDWAII  214 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar------~gsP-----L~iG~~~~~~~----vaSd~~al~~~t~~~~~L~d------gei~~i  214 (608)
                      =.-.++.++  |-|++|.      =|+|     +++-...|.-+    +...... +.|.++=+.++.      ||++.|
T Consensus       123 AT~SLl~Rr--DVIVVASVScIYGLG~P~~Y~~~~~~l~vG~~~~~~~ll~~LV~-lqY~RNd~~f~RG~FRvrGDVvEI  199 (667)
T TIGR00631       123 ATKSLLERR--DVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE-LQYERNDVDFQRGTFRVRGDVVEI  199 (667)
T ss_pred             HHHHHCCCC--CEEEEEEEEEECCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHH-HCEEECCEECCCCCEEEEEEEEEE
T ss_conf             888642378--78999875520688882556422786540785588999988634-030571234057712576318986


Q ss_pred             EC
Q ss_conf             30
Q gi|254780943|r  215 RN  216 (608)
Q Consensus       215 ~~  216 (608)
                      =+
T Consensus       200 fP  201 (667)
T TIGR00631       200 FP  201 (667)
T ss_pred             EC
T ss_conf             34


No 226
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=44.02  E-value=17  Score=15.48  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC
Q ss_conf             889999999982798089995653210001346627986
Q gi|254780943|r  526 QKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL  564 (608)
Q Consensus       526 ~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i  564 (608)
                      ..+...+++++.+|-.+++|+.+-+.  .. .+++++.+
T Consensus       209 ~~l~~~l~~l~~~G~Tvi~itH~l~~--~~-~aD~IivL  244 (261)
T cd03271         209 KKLLEVLQRLVDKGNTVVVIEHNLDV--IK-CADWIIDL  244 (261)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECHHH--HH-HCCEEEEC
T ss_conf             99999999999789999998477889--97-38999993


No 227
>pfam00901 Orbi_VP5 Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion.
Probab=43.94  E-value=20  Score=15.03  Aligned_cols=59  Identities=15%  Similarity=0.027  Sum_probs=24.9

Q ss_pred             HHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHH--HHHHHHHHHHHHHHCCC
Q ss_conf             9827980899956532100013466279868878156658999--99999999999983877
Q gi|254780943|r  535 IVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFS--LPIQMIAYCTAVLIGTD  594 (608)
Q Consensus       535 i~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~--iplQllAy~~A~~~G~d  594 (608)
                      .|+|+.+.|-+++-.-...-+-...+...+- .++.+.--+.-  +-+|-=+-.-|+.-|.-
T Consensus       446 ~RS~~~hPIYlGsm~Y~iSY~ql~~NA~riv-~~~elQ~HiLRGPlhfQRraIl~AL~~Gvk  506 (508)
T pfam00901       446 QRSRGSHPIYLGSMHYDISYAQLKRNAQRIV-NDPELQMHVLRGPLHFQRRAILNALKHGVK  506 (508)
T ss_pred             HHCCCCCCEEECCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             8534679845316665100999998899882-889999999718488899999999974755


No 228
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=43.60  E-value=14  Score=16.16  Aligned_cols=18  Identities=22%  Similarity=0.313  Sum_probs=14.3

Q ss_pred             CCEEEEECCEECCHHHHH
Q ss_conf             889999768150689998
Q gi|254780943|r   91 EGIAVTHNGIIENFSRLK  108 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~elr  108 (608)
                      .++++|+||.|.|-..+-
T Consensus        33 DRisLV~~GqiinK~~I~   50 (179)
T PRK11582         33 DRITLVRRGQIVNKIAIS   50 (179)
T ss_pred             HHHEEEECCEEECHHHHH
T ss_conf             563022357655389987


No 229
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394   These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=43.30  E-value=20  Score=14.96  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             CEEEEECCEE----CCHHHHHHHHHHCCC--EEEECCCHHHHHHHHHHHHH
Q ss_conf             8999976815----068999899997898--89724761567888763432
Q gi|254780943|r   92 GIAVTHNGII----ENFSRLKKEHFSSQQ--VFLTETDTEVIACLLEKFIK  136 (608)
Q Consensus        92 ~~~vvHNG~I----~N~~elr~~l~~~g~--~f~s~tDsEvi~~li~~~~~  136 (608)
                      .+.+===|||    ..+...+++.++.|+  .|..+||-|+.+..+...++
T Consensus        83 ~illYVGGNlvVGk~df~dV~~rFkeMGfDRVfap~t~~E~v~~~~k~dln  133 (134)
T TIGR01501        83 AILLYVGGNLVVGKTDFEDVEKRFKEMGFDRVFAPQTDLEAVVDALKKDLN  133 (134)
T ss_pred             CEEEEECCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf             279987676655776736788887645873323698582278999987506


No 230
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102   Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha  and the genome analysis of Bacillus subtilis.     Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) .    Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation .    SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=42.89  E-value=21  Score=14.92  Aligned_cols=247  Identities=16%  Similarity=0.207  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC----CCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-
Q ss_conf             7899999974178999998715747664521----11100002356551035203654307999999998625667314-
Q gi|254780943|r  248 YRHFMEKEIYEQPEAISRVLSHYINLSDHTI----IPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-  322 (608)
Q Consensus       248 y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-  322 (608)
                      |+-|=.-=-.|-+..||++.+=++.+.+...    +.+.+++         -=+-|==.|||-+-+.|-|+--++.=++ 
T Consensus        32 f~twk~~t~~eR~~lLr~Wy~Lm~enkddLA~liT~E~GKPL---------~eA~GEv~YaA~ylEWfaEEA~RvyG~~~  102 (454)
T TIGR01780        32 FKTWKNTTAKERSSLLRKWYELMLENKDDLAKLITLENGKPL---------KEAKGEVLYAASYLEWFAEEAKRVYGDTI  102 (454)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             688871383123789999999988447899999876368962---------67201022332456555300552444413


Q ss_pred             ----------------------EECCHHHCCC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             ----------------------3042010012------334455505775267881899999999863024424651178
Q gi|254780943|r  323 ----------------------DVSSEFRYRD------FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       323 ----------------------~~asEf~y~~------~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                                            +.|..|.-.+      +-+-....+|.-=-+-+=...++-.+.|.+.|.+- ++-|+.
T Consensus       103 ~~s~~~~~r~~v~kQPVGV~a~ITPWNFPaAMITRKagaALAAGCT~i~KPA~~TPlsALaLA~LA~~AG~P~-GVlnVi  181 (454)
T TIGR01780       103 PSSLQSDKRLLVIKQPVGVCAAITPWNFPAAMITRKAGAALAAGCTVIIKPAEQTPLSALALARLAEEAGIPK-GVLNVI  181 (454)
T ss_pred             CCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCC-CCCEEE
T ss_conf             6787778637997268766154278887236777334467630682786378888478999999998578999-841356


Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             7631--0002410136742001100078889999999999-----------99977621200157763227999875999
Q gi|254780943|r  375 ESTI--ARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM-----------AIYAGKVRGYINEEQERELIRSLVEIPRK  441 (608)
Q Consensus       375 ~S~l--a~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll-----------al~l~~~~g~i~~~~~~~~~~~L~~lp~~  441 (608)
                      -|+-  |.....+|  ..-|=+.   ==|||.+.-+-=+|           +++||-.-=-|-.++        ..+-++
T Consensus       182 ~g~~~~a~~~G~~L--t~~P~Vr---K~sFTGST~vGKiLM~qsA~tvKkvS~ELGGnAPfIVF~D--------Ad~D~A  248 (454)
T TIGR01780       182 TGSANDAEEVGKVL--TTSPLVR---KVSFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDD--------ADIDQA  248 (454)
T ss_pred             CCCCCCHHHHCCEE--CCCCCEE---EEEECCCCHHHHHHHHHHHHHHCEEHHHCCCCCCEEECCC--------CCHHHH
T ss_conf             17640435515000--2688477---6541377178999999613222121232078988302599--------887689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHH-HHHHC-CCCCHHHCCCCCHHHHCCC
Q ss_conf             9999997677446779874203-------6145521366449999999999997-42211-4423243144637880798
Q gi|254780943|r  442 MFDVLQNIYSQIEKLCCGLAKC-------QTLLYVGRGSSYPLALEGALKIKEI-SYLHA-EGYAAGELKHGPIALITEG  512 (608)
Q Consensus       442 i~~~l~~~~~~i~~~a~~~~~~-------~~~~~lG~G~~y~~A~EgALKlkE~-syiha-eg~~agE~kHGP~ali~~~  512 (608)
                      ++.++          |.+|.+.       +|+| +=++    +--|-|-||.|- .-++- .|+.. ---|||+  |   
T Consensus       249 VE~a~----------AsKFRn~GQTCVCaNRly-Vh~~----v~D~Fa~kL~e~V~kl~vG~Gld~-g~t~GPl--I---  307 (454)
T TIGR01780       249 VEGAM----------ASKFRNAGQTCVCANRLY-VHDS----VYDEFAKKLAEAVKKLKVGDGLDE-GVTVGPL--I---  307 (454)
T ss_pred             HHHHH----------HHHHCCCCCEEECCCEEE-EECC----CCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCC--C---
T ss_conf             99999----------874527996377266346-3156----204889999986331336787588-8412664--3---


Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             7189994480146889999999982798089995
Q gi|254780943|r  513 TFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFIT  546 (608)
Q Consensus       513 ~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~  546 (608)
                              +.+..+|..+.+++--++||+|+.=+
T Consensus       308 --------~~~a~~KVe~Hi~DAv~KGAkVv~GG  333 (454)
T TIGR01780       308 --------NEKAVEKVEKHIADAVEKGAKVVTGG  333 (454)
T ss_pred             --------CHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             --------65778988998998987299898626


No 231
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675    This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=42.82  E-value=13  Score=16.30  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHC--CCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             20365430799999999862566731430420100--123344555057752-678818999999998630244246511
Q gi|254780943|r  296 SSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRY--RDFVYSSKWASLFIS-QSGETADTLASLRYMRTQGLTIGSLVN  372 (608)
Q Consensus       296 vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y--~~~~~~~~tlvI~iS-QSGeT~dti~Al~~ak~~g~~tiaItN  372 (608)
                      ++.-..-|+-.+|.+.|-+-.|+.++++.-.-+.|  -+|-+-.|---|.|| |||.|    ..+..+++.|     |-=
T Consensus       285 ~n~~~~~~~PyVG~~AFAHKGGvHvSAv~r~p~TYEHI~P~LVGN~R~I~vSe~aG~S----Nvl~K~~~~G-----~~~  355 (543)
T TIGR00977       285 VNLPLDENMPYVGESAFAHKGGVHVSAVKRNPKTYEHIDPELVGNKRKIVVSELAGKS----NVLEKLKEFG-----IEI  355 (543)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCH----HHHHHHHHHC-----HHC
T ss_conf             5488534678236632202586577655058874234586431771379982355731----4899998704-----010


Q ss_pred             CCCCCCCCC
Q ss_conf             787631000
Q gi|254780943|r  373 VLESTIARE  381 (608)
Q Consensus       373 ~~~S~la~~  381 (608)
                      .+.||-.|.
T Consensus       356 D~~~P~~r~  364 (543)
T TIGR00977       356 DEKSPKVRK  364 (543)
T ss_pred             CCCCCHHHH
T ss_conf             578806899


No 232
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.54  E-value=21  Score=14.89  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=21.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             881899999999863024424651178763100024101367
Q gi|254780943|r  348 GETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       348 GeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      .+|..+.++++.     ..-|.....--|..+..||.+||-.
T Consensus       529 ~n~~~~~e~~~k-----lpfIV~~D~y~sETa~yADlVLPdt  565 (760)
T cd02760         529 WDTATLVDNIAK-----FPFTVSFAYTEDETNWMADVLLPEA  565 (760)
T ss_pred             CCHHHHHHHHHC-----CCEEEEEECCCCHHHHHCCEECCCC
T ss_conf             688899999856-----9959998788786777321721666


No 233
>PRK09569 type I citrate synthase; Reviewed
Probab=41.87  E-value=21  Score=14.82  Aligned_cols=89  Identities=13%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00241013674200110007888999999-----99-9999977621200157763227999875999999999767744
Q gi|254780943|r  380 RESDFIFPIKAGPEIGVASTKAFTCQLLV-----LV-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQI  453 (608)
Q Consensus       380 ~~aD~~i~~~aG~Ei~VasTKsftaql~~-----l~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i  453 (608)
                      +..+..+-++|-+|-|-|||  ||+.++.     +| -++..++-..|-+..-.-++.++-|..+-+.+... +...+.+
T Consensus       222 ~~~rl~liLHADHE~gN~ST--ft~rvv~StlsD~y~siaagi~aL~GPLHGgANq~vl~~l~~~~e~i~~~-~~~~e~i  298 (437)
T PRK09569        222 DVARMYFILHSDHESGNVSA--HTTHLVASALSDAYYAYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLNGV-EPTKEEL  298 (437)
T ss_pred             HHHHHHHHHHHCCCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCHHHH
T ss_conf             99999998972136787117--88887751587689999999998358765670589999999999980686-3559999


Q ss_pred             HHHHHHHHCCCCEEEEECC
Q ss_conf             6779874203614552136
Q gi|254780943|r  454 EKLCCGLAKCQTLLYVGRG  472 (608)
Q Consensus       454 ~~~a~~~~~~~~~~~lG~G  472 (608)
                      +++.++-.+.+. .+.|.|
T Consensus       299 ~~~i~~~l~~g~-~i~GfG  316 (437)
T PRK09569        299 TRALWDTLNAGQ-VIPGYG  316 (437)
T ss_pred             HHHHHHHHCCCC-CCCCCC
T ss_conf             999997233488-224668


No 234
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697   Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP:  ADP + phosphoenolpyruvate = ATP + pyruvate    The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues.   PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver.   The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain.    ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=41.75  E-value=22  Score=14.81  Aligned_cols=81  Identities=10%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHCCCCCCE-EEEEECCCCEEEECCCCCEEEEC--------CCCCCCCCCC---EEEE
Q ss_conf             102677999999887-512220100468723-89997499607760896136613--------7620111110---3798
Q gi|254780943|r  139 SSKKETMQKLMQCLT-GSYSIAVIFEDDPHS-IIVARKGPPLIIGHGEGEMFVGS--------DVTALTLLTD---KVTY  205 (608)
Q Consensus       139 ~~~~~ai~~~~~~l~-G~ya~~il~~~~p~~-i~~ar~gsPL~iG~~~~~~~vaS--------d~~al~~~t~---~~~~  205 (608)
                      ....+-++++-+++. =.-|+ ++|.+.|+- +.-...+-|+.|-.|+.-.+.++        +..--+.|-+   =+-.
T Consensus        60 ~~~i~~vR~~~~~~~~~~vaI-~lDtkGPeIR~g~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~~~~v~Y~~gYnl~~~  138 (513)
T TIGR01064        60 GKRIENVREASEKLGGRPVAI-LLDTKGPEIRTGEIKGDGEVKLKKGDKVILTTDVKYKGEGSEEKVSVDYKGGYNLVKD  138 (513)
T ss_pred             HHHHHHHHHHHHHHCCCCEEE-EEECCCCEEEEEECCCCCCEEECCCCEEEEECCHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             999999999999719950899-9726887799874178875686278879982571342034778668716786556540


Q ss_pred             CCCCEEEEEECCCCE
Q ss_conf             276518897305741
Q gi|254780943|r  206 MEDGDWAIIRNSGLT  220 (608)
Q Consensus       206 L~dgei~~i~~~~~~  220 (608)
                      ++.|+.+.|+++.++
T Consensus       139 v~~G~~iLvDDG~i~  153 (513)
T TIGR01064       139 VVEGDKILVDDGKIS  153 (513)
T ss_pred             CCCCCEEEEECCEEE
T ss_conf             268888987667799


No 235
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=41.61  E-value=18  Score=15.33  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=14.4

Q ss_pred             HHHH-HHHHHH-HHHHCCCCCEEEE
Q ss_conf             1279-999999-9763158743489
Q gi|254780943|r   12 SVGE-RLFKAL-KRLEYRGYDSSGM   34 (608)
Q Consensus        12 ~~~~-~l~~~L-~~Le~RG~Ds~Gi   34 (608)
                      ++.+ .|..|| +-|.-|||+=|=.
T Consensus         9 ~AGKs~l~AaLCRiL~rrGy~VAPF   33 (502)
T TIGR00313         9 SAGKSLLTAALCRILARRGYRVAPF   33 (502)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             4028999999999985278812785


No 236
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=41.56  E-value=13  Score=16.39  Aligned_cols=92  Identities=21%  Similarity=0.424  Sum_probs=49.0

Q ss_pred             ECCCCEEEEEECCCCEECCCCCCCCC--CHHHHHCCCCCHHCCCHHHHH---HHHHHHHCHHHHHHHHHCCCCCCCCC-C
Q ss_conf             82765188973057410033322210--001100012100001407899---99997417899999871574766452-1
Q gi|254780943|r  205 YMEDGDWAIIRNSGLTIYDSQGYEIE--RPIQIVQIAPFLIGKGNYRHF---MEKEIYEQPEAISRVLSHYINLSDHT-I  278 (608)
Q Consensus       205 ~L~dgei~~i~~~~~~i~~~~~~~~~--~~~~~i~~~~~~~~kg~y~hf---m~kEI~EQP~~l~~~i~~~~~~~~~~-~  278 (608)
                      .+.+.|=..+.++|++..=-+..++.  |-+. =+-|..--| .||.|-   ++|||||.  .+=+++.    ..... +
T Consensus       533 ~~p~KD~~~L~eGGiTLSGGQRARIsLARAvY-KDADLYLLD-SPF~~LDv~TEKeIFE~--ClCKL~~----~KTRIlV  604 (1534)
T TIGR01271       533 LFPEKDKTVLGEGGITLSGGQRARISLARAVY-KDADLYLLD-SPFTHLDVVTEKEIFES--CLCKLLS----NKTRILV  604 (1534)
T ss_pred             HCCCCCCEEECCCCEECCCCHHHHHHHHHHHH-HHHHHHHHC-CCCCHHCCCCCHHHHHH--HHHHHHC----CCCEEEE
T ss_conf             35444760214777642474057888888775-420023213-78311012213567888--8998841----7851888


Q ss_pred             CCCCHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf             1110000235655103520365430799
Q gi|254780943|r  279 IPNIFNYDFANISGLLVSSCGTSYLAGL  306 (608)
Q Consensus       279 ~~~~~~~~~~~~~~I~~vGcGTSy~Aal  306 (608)
                      ...+  ..+++.|+|++..-|.+|+=|.
T Consensus       605 TSKl--EHLKkADKILlLH~G~cYFYG~  630 (1534)
T TIGR01271       605 TSKL--EHLKKADKILLLHEGVCYFYGT  630 (1534)
T ss_pred             ECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf             4223--5413115166554570124247


No 237
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=41.01  E-value=22  Score=14.73  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             5057752678818999999998630244246511
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVN  372 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN  372 (608)
                      -++++-+.||+|+=.-..+.+++++|.+.+.+.+
T Consensus         3 v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~~~   36 (122)
T pfam03205         3 VLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKH   36 (122)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999489998999999999999987994489998


No 238
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=40.98  E-value=22  Score=14.73  Aligned_cols=34  Identities=15%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             5775267881899999999863024424651178
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                      +++-|-||.|+=.-..+...+++|.++-.|=...
T Consensus         7 ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~   40 (170)
T PRK10751          7 IAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   40 (170)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9946999999999999999998798499994577


No 239
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328   These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=40.90  E-value=11  Score=16.73  Aligned_cols=23  Identities=13%  Similarity=0.326  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             99999999827980899956532
Q gi|254780943|r  528 TLSNIQEIVTRGGRVIFITDEEG  550 (608)
Q Consensus       528 ~~s~~~Ei~arg~~vi~I~~~~~  550 (608)
                      ....+++++.||-+++++||...
T Consensus       104 ~~~gL~~L~~~G~~l~iLSNg~~  126 (207)
T TIGR01428       104 VPAGLRALKERGLRLAILSNGSP  126 (207)
T ss_pred             CHHHHHHHHHCCCEEEEECCCCH
T ss_conf             18899999764323652148986


No 240
>PRK05339 hypothetical protein; Provisional
Probab=40.85  E-value=22  Score=14.71  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             555057752678818999999998630244246511787631
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTI  378 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~l  378 (608)
                      .+-+.++||+||+|+-   ++-.|. +|.++.=+-=+|+.++
T Consensus       149 ADiiLvGVSRtsKTPt---S~YLA~-~G~KvAN~PLvpe~~l  186 (273)
T PRK05339        149 ADVILVGVSRTSKTPT---SLYLAN-KGIKAANYPLVPEVPL  186 (273)
T ss_pred             CCEEEEECCCCCCCCH---HHHHHH-CCCCEEEECCCCCCCC
T ss_conf             8899982255789837---899985-5852241077799999


No 241
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=40.61  E-value=22  Score=14.69  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCEEEEECCEECC--HHHHHHHHHHCCC-EEEEC------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             8899997681506--8999899997898-89724------------7615678887634320010267799999988751
Q gi|254780943|r   91 EGIAVTHNGIIEN--FSRLKKEHFSSQQ-VFLTE------------TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        91 ~~~~vvHNG~I~N--~~elr~~l~~~g~-~f~s~------------tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      .-+.++||-++..  |.|+|.++-.+-. -|.|-            ||+-     |+        -..++..-+.+++-+
T Consensus        60 PtLVlahNKTLAAQLy~Efk~fFP~NaVEYFVSYyDYYQPEAYip~tDtY-----IE--------KdssIN~eId~lR~s  126 (657)
T PRK05298         60 PTLVLAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTY-----IE--------KDSSINEEIERLRLS  126 (657)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCE-----EE--------CCCHHHHHHHHHHHH
T ss_conf             75997665889999999999768887179985144566971114788852-----42--------363466999999999


Q ss_pred             HHHHHHCCCCCCEEEEEE
Q ss_conf             222010046872389997
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVAR  173 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar  173 (608)
                      -.-.++.++  |.|++|.
T Consensus       127 AT~SLl~Rr--DVIVVAS  142 (657)
T PRK05298        127 ATKSLLERR--DVIVVAS  142 (657)
T ss_pred             HHHHHHCCC--CEEEEEE
T ss_conf             999885479--8699973


No 242
>PRK06769 hypothetical protein; Validated
Probab=40.40  E-value=14  Score=16.08  Aligned_cols=25  Identities=28%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8999999998630244246511787
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      ..+.+|++..+++|..++.|||-++
T Consensus        31 ~~~~~ai~~L~~~g~~i~vvTNQsg   55 (175)
T PRK06769         31 PFTKASLQKLKAKNIKIFSFTNQPG   55 (175)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             8889999999986995999968821


No 243
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.33  E-value=12  Score=16.46  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             8899999999827980899956
Q gi|254780943|r  526 QKTLSNIQEIVTRGGRVIFITD  547 (608)
Q Consensus       526 ~k~~s~~~Ei~arg~~vi~I~~  547 (608)
                      +.+...+++++..|-.++++|.
T Consensus       182 ~~i~~ll~~l~~~G~Tii~vtH  203 (286)
T PRK13641        182 KEMMQIFKDYQKAGHTVILVTH  203 (286)
T ss_pred             HHHHHHHHHHHHCCCEEEEECC
T ss_conf             9999999999963999999915


No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=40.13  E-value=23  Score=14.64  Aligned_cols=28  Identities=21%  Similarity=0.603  Sum_probs=23.4

Q ss_pred             CEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf             1366137620111110379827651889
Q gi|254780943|r  186 EMFVGSDVTALTLLTDKVTYMEDGDWAI  213 (608)
Q Consensus       186 ~~~vaSd~~al~~~t~~~~~L~dgei~~  213 (608)
                      -.+++-|..-+..++++++.|+||+++.
T Consensus       187 il~itH~l~~v~~~~Drv~vm~~G~iv~  214 (491)
T PRK10982        187 IVYISHKMEEIFQLCDEITILRDGQWIA  214 (491)
T ss_pred             EEEECCCHHHHHHCCCEEEECCCCEEEE
T ss_conf             6786243674421586789756974985


No 245
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=39.38  E-value=23  Score=14.56  Aligned_cols=46  Identities=9%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf             5505775267881899999999863024424651178763100024
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESD  383 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD  383 (608)
                      ..++|..-|.=-..|+.++++.+++.+.++++++.++..-....|+
T Consensus        27 ~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENMs~~~c~~c~   72 (81)
T pfam10609        27 GAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENMSYFVCPDCG   72 (81)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             7699809859999999999999998499618999779753689999


No 246
>PRK12483 threonine dehydratase; Reviewed
Probab=39.32  E-value=23  Score=14.55  Aligned_cols=49  Identities=18%  Similarity=0.191  Sum_probs=22.7

Q ss_pred             CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             2010012334455505775267881899999999863024424651178
Q gi|254780943|r  326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                      .||.|+-..-..--++++++-++...+.-..++..++.|..++-+|+++
T Consensus       372 tEF~YR~~~~~~A~ifvgi~~~~~~~~~~~~~~~l~~~g~~~~Dls~ne  420 (521)
T PRK12483        372 TEFNYRYHDAREAHLFVGVQTHPRHDSRAQLLASLRAQGFPVLDLTDNE  420 (521)
T ss_pred             EEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf             5777314588847999987627815699999999997799547466577


No 247
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=38.89  E-value=23  Score=14.65  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             EEEECCCCCCCCCCCEEEECCCCEEEEEECC
Q ss_conf             3661376201111103798276518897305
Q gi|254780943|r  187 MFVGSDVTALTLLTDKVTYMEDGDWAIIRNS  217 (608)
Q Consensus       187 ~~vaSd~~al~~~t~~~~~L~dgei~~i~~~  217 (608)
                      .+++-| .-+..++++++.|+||+|+.=++.
T Consensus       198 i~vtHd-~~~a~~a~Rii~~~dG~iv~d~~~  227 (648)
T PRK10535        198 IIVTHD-PQVAAQAERVIEIRDGEIVRNPPA  227 (648)
T ss_pred             EEECCC-HHHHHHCCEEEEEECCEEECCCCC
T ss_conf             997648-699964997999958989737996


No 248
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=38.57  E-value=24  Score=14.48  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=25.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             52678818999999998630244246511787631000241013674
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA  390 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a  390 (608)
                      .||+|.+..+.++|+--++.. ..|++...+ |.-++.||++||=..
T Consensus       502 ~~~~~~~~~~~e~LkD~~klp-liV~~D~~~-~ETa~yADyILPDtt  546 (735)
T cd02758         502 YGAPGLVKQVEEKLKDPKKLP-LFIAIDAFI-NETSAYADYIVPDTT  546 (735)
T ss_pred             HCCCCCHHHHHHHHCCHHHCC-EEEEEECCC-CHHHHHCCEEECCCC
T ss_conf             608886799999845840289-699985786-766773868615635


No 249
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.20  E-value=24  Score=14.44  Aligned_cols=40  Identities=13%  Similarity=-0.001  Sum_probs=22.6

Q ss_pred             CCEEEEECCEECCHHH---HHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf             8899997681506899---98999978988972476156788876
Q gi|254780943|r   91 EGIAVTHNGIIENFSR---LKKEHFSSQQVFLTETDTEVIACLLE  132 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~e---lr~~l~~~g~~f~s~tDsEvi~~li~  132 (608)
                      -+++|+=-|+=.+..+   +-....++|....|  |-|..+..+.
T Consensus        70 ~d~vV~SPGI~p~~p~~~~~l~~A~~~gi~i~~--eiel~~~~~~  112 (501)
T PRK02006         70 VELVALSPGLSPLEPALAALLAAARERGIPVWG--ELELFAQALA  112 (501)
T ss_pred             CCEEEECCEECCCCCCHHHHHHHHHHCCCCEEE--HHHHHHHHHH
T ss_conf             999998990088885431999999987995876--8999998876


No 250
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=37.79  E-value=25  Score=14.40  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             0365430799999999862566731430420100123344555057752678818999999998630244246511787
Q gi|254780943|r  297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       297 GcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      |.|||.-.-+..+..+++ .+++++++..+ +.-.  ..+.-+++ +.|+     |   -.+.....+.++++|.|-.+
T Consensus         9 GlGSS~mlkm~i~~vl~~-lgi~~~v~h~d-i~~a--~~~~~Dii-it~~-----~---la~~~~~~~~~vi~l~n~~d   74 (86)
T cd05563           9 GLGSSLMLKMNVEKVLKE-LGIEAEVEHTD-LGSA--KASSADII-VTSK-----D---LASLLADGGAKVIGLKNIMD   74 (86)
T ss_pred             CCCHHHHHHHHHHHHHHH-CCCCCEEEEEE-HHHC--CCCCCCEE-EECH-----H---HHHHHHCCCCEEEEEECCCC
T ss_conf             943899999999999998-69982799802-6446--87889999-9878-----9---98663117982999835789


No 251
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=37.58  E-value=25  Score=14.37  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             5103520365430799999999862566731430
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDV  324 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~  324 (608)
                      ..|.++|.|+|   +|.++|++.+ .++.+.++.
T Consensus        26 ~DVvIVGaGps---GLtAAy~LAk-~g~Kv~i~E   55 (257)
T PRK04176         26 VDVAIVGAGPS---GLTAAYYLAK-AGLKVAVFE   55 (257)
T ss_pred             CCEEEECCCCH---HHHHHHHHHH-CCCEEEEEE
T ss_conf             68899888827---9999999986-896599997


No 252
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.50  E-value=19  Score=15.13  Aligned_cols=19  Identities=11%  Similarity=0.373  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999982798089995
Q gi|254780943|r  528 TLSNIQEIVTRGGRVIFIT  546 (608)
Q Consensus       528 ~~s~~~Ei~arg~~vi~I~  546 (608)
                      +...+++++..|-.++++|
T Consensus       184 i~~ll~~l~~~G~Tii~vT  202 (280)
T PRK13649        184 LMTIFKKLHQSGMTIVLVT  202 (280)
T ss_pred             HHHHHHHHHHCCCEEEEEC
T ss_conf             9999999986399999987


No 253
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115   This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii  but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=37.31  E-value=14  Score=16.04  Aligned_cols=60  Identities=8%  Similarity=0.124  Sum_probs=36.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHH----HHHHCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45550577526788189999999----9863024424651-1787631000241013674200110
Q gi|254780943|r  336 SSKWASLFISQSGETADTLASLR----YMRTQGLTIGSLV-NVLESTIARESDFIFPIKAGPEIGV  396 (608)
Q Consensus       336 ~~~tlvI~iSQSGeT~dti~Al~----~ak~~g~~tiaIt-N~~~S~la~~aD~~i~~~aG~Ei~V  396 (608)
                      +++-++|+-|.==.|.-+|-||.    ..|+++++++++. =+-++++.-.|+..+. -+|.|.+.
T Consensus       234 ~~~~vligPSNPvtSIGpILal~Gire~Lrda~~kVVavSPIvG~~~vsGpA~Klm~-A~G~dvsa  298 (359)
T TIGR01819       234 DADVVLIGPSNPVTSIGPILALPGIREALRDATVKVVAVSPIVGDKPVSGPAGKLMA-AVGVDVSA  298 (359)
T ss_pred             CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCC-CCCCCCCH
T ss_conf             599899778668111322327256899998369738997164068887584342042-23436344


No 254
>PRK11587 putative phosphatase; Provisional
Probab=37.11  E-value=23  Score=14.60  Aligned_cols=35  Identities=11%  Similarity=0.078  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99999998630244246511787631000241013
Q gi|254780943|r  353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       353 ti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      +...++.|+..|.++++|+...++.=-..+|.++.
T Consensus       164 S~~gi~AA~~AG~~~v~V~~~~~~~~~~~Ad~vi~  198 (218)
T PRK11587        164 APAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVLH  198 (218)
T ss_pred             CHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEEC
T ss_conf             78889999986998999879997457624999989


No 255
>pfam01924 HypD Hydrogenase formation hypA family. HypD is involved in hydrogenase formation. It contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into hypD resulted in R. leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas.
Probab=36.82  E-value=8.3  Score=17.71  Aligned_cols=136  Identities=21%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             HHHHHHHCCCCEEEEECCCCC-CCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999986302442465117876-310002--41013674200110007888999999999999977621200157763227
Q gi|254780943|r  356 SLRYMRTQGLTIGSLVNVLES-TIARES--DFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI  432 (608)
Q Consensus       356 Al~~ak~~g~~tiaItN~~~S-~la~~a--D~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~  432 (608)
                      .|..+|.+|+.+-.+-.-.++ .+|+.-  ..++....|-|--.++|       ++..+-|    ..++.-+    =.++
T Consensus        95 SL~~ara~GadVriVYSpldAl~iA~~nP~k~vVF~avGFETTaP~~-------A~~i~~a----~~~~~~N----f~vl  159 (355)
T pfam01924        95 SLLDARAEGADVRIVYSPLDALKIARENPDKEVVFFAIGFETTAPAT-------AAAILQA----KAEGLKN----FSVL  159 (355)
T ss_pred             CHHHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHH----HHCCCCC----EEEE
T ss_conf             99999858997899958899999999789985999943655565799-------9999999----9809995----8997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCHHHCCCCCHHHH-
Q ss_conf             999875999999999767744677987420361455213664499999999999974221--14423243144637880-
Q gi|254780943|r  433 RSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLH--AEGYAAGELKHGPIALI-  509 (608)
Q Consensus       433 ~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syih--aeg~~agE~kHGP~ali-  509 (608)
                      ...+.+|..++.++++-+..++.+   +..-.-..++|......++.|=        .++  --||+..++..|-..++ 
T Consensus       160 ~~hkl~pPa~~~ll~~~~~~idgf---i~PGHVstI~G~~~y~~l~~~y--------~~P~VVaGFEp~DiL~~i~~lv~  228 (355)
T pfam01924       160 SNHVLVPPAMEALLEDPEVRIDGF---IGPGHVSTIIGTEPYEFLAEEY--------GVPVVVAGFEPLDILQAILMLVR  228 (355)
T ss_pred             EECCCCHHHHHHHHHCCCCCCCEE---EECCEEEEEECHHHHHHHHHHC--------CCCEEECCCCHHHHHHHHHHHHH
T ss_conf             702414899999981999875458---7368667884513669999982--------99866437896999999999999


Q ss_pred             --CCCCEEEE
Q ss_conf             --79871899
Q gi|254780943|r  510 --TEGTFVIA  517 (608)
Q Consensus       510 --~~~~~vi~  517 (608)
                        .++.+-+.
T Consensus       229 q~~~g~~~v~  238 (355)
T pfam01924       229 QLNEGRAEVE  238 (355)
T ss_pred             HHHCCCCEEE
T ss_conf             9977985399


No 256
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=36.66  E-value=26  Score=14.28  Aligned_cols=31  Identities=29%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             51035203654307999999998625667314304
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVS  325 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~a  325 (608)
                      ..+.++|.|.|   +|.++|++-+ .+..+.++..
T Consensus        18 ~DV~IVGaGps---GL~aA~~LAk-~g~KV~i~E~   48 (229)
T pfam01946        18 SDVVIVGAGPS---GLTAAYYLAK-KGLKVAIIER   48 (229)
T ss_pred             CCEEEECCCCH---HHHHHHHHHH-CCCEEEEEEC
T ss_conf             68899887817---9999999987-8985999964


No 257
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075   In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=36.51  E-value=26  Score=14.26  Aligned_cols=64  Identities=20%  Similarity=0.306  Sum_probs=33.9

Q ss_pred             HHHHHHHCCCCCEEE-ECCHHHCCCCC-CCC------CCEEEE---EC-----CCC---CC---HHHHHHHHHHHHCCCC
Q ss_conf             999986256673143-04201001233-445------550577---52-----678---81---8999999998630244
Q gi|254780943|r  309 KFWFERLARLKVEID-VSSEFRYRDFV-YSS------KWASLF---IS-----QSG---ET---ADTLASLRYMRTQGLT  366 (608)
Q Consensus       309 ~~~~e~~~~i~v~v~-~asEf~y~~~~-~~~------~tlvI~---iS-----QSG---eT---~dti~Al~~ak~~g~~  366 (608)
                      -+.+++++|.++... +- . .|.+.. +.+      -++||.   .|     ++|   ..   +.+++.++..-++|.+
T Consensus        18 ~~A~~k~~Gv~~~~Vhik-q-w~~D~~r~~~~rsvfD~D~VvlPGGFSyGDYLRaGAIAa~rvk~p~~~~V~~~A~~G~p   95 (264)
T TIGR01737        18 VYALEKLLGVDAEIVHIK-Q-WYEDKSRLSDQRSVFDYDAVVLPGGFSYGDYLRAGAIAALRVKSPIMQEVREFAEKGKP   95 (264)
T ss_pred             HHHHHHHCCCCEEEEEEE-E-CHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCE
T ss_conf             999997149983799865-2-10000478766417873348866877723577799999875030889999999955982


Q ss_pred             EEEEECCC
Q ss_conf             24651178
Q gi|254780943|r  367 IGSLVNVL  374 (608)
Q Consensus       367 tiaItN~~  374 (608)
                      +|||||--
T Consensus        96 VLGiCNGF  103 (264)
T TIGR01737        96 VLGICNGF  103 (264)
T ss_pred             EEEEECHH
T ss_conf             89976647


No 258
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=36.26  E-value=20  Score=15.03  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             EECCCCCCCCCCCCCCCEEECCEEE--EECCEECCHHHHHHHHHHCCCEEEEC-CCHHHHHHHHHHHHH---HCCH---H
Q ss_conf             1045438899700267502388999--97681506899989999789889724-761567888763432---0010---2
Q gi|254780943|r   71 HTRWATHGLPNKENSHPHCIEGIAV--THNGIIENFSRLKKEHFSSQQVFLTE-TDTEVIACLLEKFIK---NGSS---K  141 (608)
Q Consensus        71 HtR~AT~G~~~~~NahP~~~~~~~v--vHNG~I~N~~elr~~l~~~g~~f~s~-tDsEvi~~li~~~~~---~~~~---~  141 (608)
                      -+||-.+|........+ ..+.+.+  =||-.+.--.-.+.  ..+-+.+.|. -|.|+++.++..+=-   .|.+   -
T Consensus         7 T~r~~~~~~~~~~~~~~-~~~p~I~a~WH~~ll~~~~~~~~--~~~~~~lvS~s~DGeiia~~~~~~G~~~IRGSs~rgg   83 (189)
T cd07983           7 TLRWRVIGDESADALIA-QGEPVILAFWHGRLLLMPYLFRR--RKRIAALISRSKDGEIIARVLERLGIRVVRGSSSRGG   83 (189)
T ss_pred             EEEEEEECCHHHHHHHH-CCCCEEEEEECHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             64899999327888754-69989999977887767987246--7874999800535338999999819815644555581


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6779999998875122201004687
Q gi|254780943|r  142 KETMQKLMQCLTGSYSIAVIFEDDP  166 (608)
Q Consensus       142 ~~ai~~~~~~l~G~ya~~il~~~~p  166 (608)
                      ..|++.+++.++..+++++. -|.|
T Consensus        84 ~~al~~~~~~lk~g~~i~it-pDGP  107 (189)
T cd07983          84 AAALREMLRALKDGYNIAIT-PDGP  107 (189)
T ss_pred             HHHHHHHHHHHHCCCEEEEE-CCCC
T ss_conf             99999999999779859994-6899


No 259
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699   Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.
Probab=36.05  E-value=25  Score=14.31  Aligned_cols=39  Identities=28%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCC--CCCCCCCC
Q ss_conf             577526788189999999986302442465-117876--31000241
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSL-VNVLES--TIARESDF  384 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaI-tN~~~S--~la~~aD~  384 (608)
                      ++-|||     +|.+++...|+.|-++++| |...-|  ++|+++|.
T Consensus       247 ~~~vp~-----~~~~~~~k~~~~G~Ri~aVGTTsvRslE~~a~~~~~  288 (364)
T TIGR00113       247 YLEVPQ-----ETVEALEKTRESGGRIIAVGTTSVRSLESAAQEADE  288 (364)
T ss_pred             HEECCH-----HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf             012687-----899999999970983999876147779888763047


No 260
>pfam00265 TK Thymidine kinase.
Probab=35.94  E-value=26  Score=14.20  Aligned_cols=53  Identities=8%  Similarity=-0.024  Sum_probs=40.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             50577526788189999999986302442465117876310002410136742001
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      ++.++---||.|++.++.++..+.+|-+++.++-..+   .|..+..+-.+.|-+.
T Consensus         4 ~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D---~R~~~~~i~Sh~g~~~   56 (175)
T pfam00265         4 ELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAID---NRYGTGKVVTHDGISM   56 (175)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCEEECCCCCCC
T ss_conf             9999251778999999999999987993999946112---7789996988999811


No 261
>PRK09224 threonine dehydratase; Reviewed
Probab=35.80  E-value=27  Score=14.19  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=24.0

Q ss_pred             CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             2010012334455505775267881899999999863024424651178
Q gi|254780943|r  326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                      .||.|+-..-..-..+++|+-++...|.-..++..++.|..++-+|++.
T Consensus       355 tEF~YR~~~~~~A~ifvgi~~~~~~~e~~~~~~~l~~~g~~~~Dls~nE  403 (504)
T PRK09224        355 TEFNYRYADAKNAHIFVGVQLSRGREERAEIIAQLREHGYPVVDLSDDE  403 (504)
T ss_pred             EEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf             5777213689843899999845877899999999997799547446438


No 262
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.71  E-value=21  Score=14.82  Aligned_cols=20  Identities=20%  Similarity=0.109  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHC-CCCC-CCCCCC
Q ss_conf             99999999838-7798-897986
Q gi|254780943|r  582 MIAYCTAVLIG-TDVD-QPRNLA  602 (608)
Q Consensus       582 llAy~~A~~~G-~dpD-~PRnLa  602 (608)
                      -|++.+. .+| +..+ .|+...
T Consensus       250 ~l~~~L~-~~g~~~~~~~p~t~~  271 (288)
T PRK13643        250 HFADQLQ-KTGAVTFEKLPITRA  271 (288)
T ss_pred             HHHHHHH-HCCCCCCCCCCCCHH
T ss_conf             9999999-769988677989899


No 263
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=35.53  E-value=25  Score=14.41  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             4688999999998279808999565
Q gi|254780943|r  524 FFQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       524 ~~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      ....+...+++++..|..++++|.+
T Consensus       169 ~~~~i~~~l~~l~~~g~tii~itHd  193 (211)
T cd03225         169 GRRELLELLKKLKAEGKTIIIVTHD  193 (211)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999999999999789999999259


No 264
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.42  E-value=27  Score=14.14  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=15.1

Q ss_pred             CHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf             6899989999789889724761567
Q gi|254780943|r  103 NFSRLKKEHFSSQQVFLTETDTEVI  127 (608)
Q Consensus       103 N~~elr~~l~~~g~~f~s~tDsEvi  127 (608)
                      +..+|.+.|.+.|+.+.-.||-|+.
T Consensus        53 e~~~l~~~l~~~gy~~~d~t~n~~~   77 (81)
T cd04907          53 DLDELKERLDALGYPYQEETDNPAY   77 (81)
T ss_pred             HHHHHHHHHHHCCCCCEECCCCHHH
T ss_conf             8999999999869983887699999


No 265
>PRK07208 hypothetical protein; Provisional
Probab=35.34  E-value=27  Score=14.14  Aligned_cols=10  Identities=40%  Similarity=0.557  Sum_probs=6.1

Q ss_pred             CCCEEEEECC
Q ss_conf             3614552136
Q gi|254780943|r  463 CQTLLYVGRG  472 (608)
Q Consensus       463 ~~~~~~lG~G  472 (608)
                      ...+++.||-
T Consensus       420 ~~~I~~~GR~  429 (474)
T PRK07208        420 FPNLHLVGRN  429 (474)
T ss_pred             CCCEEEECCC
T ss_conf             7998990658


No 266
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=34.41  E-value=28  Score=14.04  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=12.6

Q ss_pred             HHHHHCCCCCEEEEEEEEC-----CEEEEEEC
Q ss_conf             9976315874348999958-----92999945
Q gi|254780943|r   21 LKRLEYRGYDSSGMATICD-----GKIQCVRA   47 (608)
Q Consensus        21 L~~Le~RG~Ds~Gia~~~~-----~~i~~~K~   47 (608)
                      -.+|+-||+ .+.+.++..     |.+..++.
T Consensus        16 Ay~L~k~~p-~~~i~lfE~~~r~GG~l~T~~~   46 (444)
T COG1232          16 AYRLQKAGP-DVEVTLFEADDRVGGLLRTVKI   46 (444)
T ss_pred             HHHHHHHCC-CCCEEEEECCCCCCCEEEEEEE
T ss_conf             999998589-9867998348877865899831


No 267
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=34.19  E-value=15  Score=15.94  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=34.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             267881899999999863024424651178763100024101
Q gi|254780943|r  345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      --.|-.-+|..=.+..|..|+.+++.|+.|+-.|||++....
T Consensus       160 ~~eGPrFeT~AE~r~~r~~GaDvVGMT~~PEa~LARE~gi~Y  201 (289)
T PRK08931        160 CMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICY  201 (289)
T ss_pred             EEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf             965798786999999998098933677447999998728853


No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=34.06  E-value=28  Score=14.00  Aligned_cols=28  Identities=11%  Similarity=0.356  Sum_probs=22.7

Q ss_pred             CEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf             1366137620111110379827651889
Q gi|254780943|r  186 EMFVGSDVTALTLLTDKVTYMEDGDWAI  213 (608)
Q Consensus       186 ~~~vaSd~~al~~~t~~~~~L~dgei~~  213 (608)
                      -.+++-+..-+..++++++.|+||.++.
T Consensus       196 il~isH~l~~v~~~aDrv~vl~~G~iv~  223 (513)
T PRK13549        196 CIYISHKLNEVKAISDTICVIRDGRHIG  223 (513)
T ss_pred             EEEEECCHHHHHCCCCEEEECCCCCEEE
T ss_conf             9999457143030098740448985885


No 269
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=34.05  E-value=28  Score=14.00  Aligned_cols=59  Identities=25%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CEEEEECCCCCCH----H--HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             1035203654307----9--999999986256673143042010012334455505775267881899999999863024
Q gi|254780943|r  292 GLLVSSCGTSYLA----G--LVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL  365 (608)
Q Consensus       292 ~I~~vGcGTSy~A----a--l~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~  365 (608)
                      .|+++|.||+++.    .  ..++.+.+++-..++  ..+  |..               -  -..++-++++...+.|+
T Consensus         1 giL~v~hGs~~~dpy~~~ie~~a~~i~~~~~~~~v--~~~--f~e---------------~--~~P~i~eai~~l~~~G~   59 (101)
T cd03409           1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPY--YVG--FQS---------------G--LGPDTEEAIRELAEEGY   59 (101)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE--EHH--HHH---------------H--CCCCHHHHHHHHHHCCC
T ss_conf             96999669997666089999999999988799824--143--797---------------7--19999999999997698


Q ss_pred             CEEEEE
Q ss_conf             424651
Q gi|254780943|r  366 TIGSLV  371 (608)
Q Consensus       366 ~tiaIt  371 (608)
                      +.+.++
T Consensus        60 ~~ivvv   65 (101)
T cd03409          60 QRVVIV   65 (101)
T ss_pred             CEEEEE
T ss_conf             679998


No 270
>PRK06242 flavodoxin; Provisional
Probab=33.97  E-value=28  Score=13.99  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=21.8

Q ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             550577526-788189999999986302442465117
Q gi|254780943|r  338 KWASLFISQ-SGETADTLASLRYMRTQGLTIGSLVNV  373 (608)
Q Consensus       338 ~tlvI~iSQ-SGeT~dti~Al~~ak~~g~~tiaItN~  373 (608)
                      ++++|.-|+ .|.|.-+-+|+..  +.++..+.+...
T Consensus         2 K~~IvY~S~~tGNT~KvA~aiae--~l~~~~~~~~~~   36 (150)
T PRK06242          2 KALIVYVSIHHGNTEKIAKAMAE--VLNADVIKPTDI   36 (150)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHH--HCCCCEEEECCC
T ss_conf             68999995688979999999997--659739974458


No 271
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=33.93  E-value=28  Score=13.99  Aligned_cols=10  Identities=20%  Similarity=0.145  Sum_probs=6.4

Q ss_pred             HHHHHCCCCC
Q ss_conf             9976315874
Q gi|254780943|r   21 LKRLEYRGYD   30 (608)
Q Consensus        21 L~~Le~RG~D   30 (608)
                      -..|+.+|++
T Consensus        14 A~~L~~~G~~   23 (430)
T TIGR03467        14 AVELARAGVR   23 (430)
T ss_pred             HHHHHHCCCC
T ss_conf             9999878998


No 272
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.85  E-value=28  Score=13.98  Aligned_cols=13  Identities=23%  Similarity=0.110  Sum_probs=7.2

Q ss_pred             CEEEEECCCCCCH
Q ss_conf             5057752678818
Q gi|254780943|r  339 WASLFISQSGETA  351 (608)
Q Consensus       339 tlvI~iSQSGeT~  351 (608)
                      ..+|+-|=||+|+
T Consensus        34 ~aiiG~NGsGKST   46 (273)
T PRK13647         34 TAILGPNGAGKST   46 (273)
T ss_pred             EEEECCCCCHHHH
T ss_conf             9999999975999


No 273
>CHL00199 infC translation initiation factor 3; Provisional
Probab=33.67  E-value=29  Score=13.96  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             EEEEECCCCC---CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             0577526788---18999999998630244246511787631000241013
Q gi|254780943|r  340 ASLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       340 lvI~iSQSGe---T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      -|-.|+-.|+   ...+-+|++.|++.|.-.+-|..+.+-|+++.-|+.=+
T Consensus        26 ~VrlI~~~G~~lGv~~~~eAl~~A~~~gLDLVevsp~a~PPVcKimDygK~   76 (182)
T CHL00199         26 QVRVIDDSGSQLGIFTSEQALQLAKKQGLDLVLVSEKSDPPVCRIIDYGKY   76 (182)
T ss_pred             EEEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEHHHH
T ss_conf             899998999386607199999999984998899889999987898655668


No 274
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=33.64  E-value=29  Score=13.95  Aligned_cols=25  Identities=8%  Similarity=0.201  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8999999998630244246511787
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      ..+++|++..+++|..++.|||-++
T Consensus        32 ~g~~~al~~l~~~g~~~~ivTNQsG   56 (181)
T PRK08942         32 PGSIEAIARLKQAGYRVVVATNQSG   56 (181)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             7889999999987996999958713


No 275
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=33.42  E-value=29  Score=13.93  Aligned_cols=86  Identities=19%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             HHHHHHHCCC-CCEEEECCHHHCCCC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             9999862566-731430420100123---344555057752678818999999998630244246511787631000241
Q gi|254780943|r  309 KFWFERLARL-KVEIDVSSEFRYRDF---VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDF  384 (608)
Q Consensus       309 ~~~~e~~~~i-~v~v~~asEf~y~~~---~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~  384 (608)
                      .-|+...... ......|.-|+|.-.   .-.++..|..   -||-..+++|...+.++|.--.-+..+++---++....
T Consensus       359 ~~~l~~~~~~~~~~~~tP~~F~~~L~~~Ar~~~krIVlp---Eg~d~rvl~Aa~~~~~~gia~~iLlG~~~~i~~~~~~~  435 (702)
T PRK05632        359 TDWLESRLATPRSRRLSPPAFRYQLTERARAAKKRIVLP---EGDEPRTLKAAAICAERGIADCVLLGNPEEIRRVAAAQ  435 (702)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC---CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC
T ss_conf             999999865778888590999999999997479879967---98986999999999986980599978999999999975


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             0136742001100
Q gi|254780943|r  385 IFPIKAGPEIGVA  397 (608)
Q Consensus       385 ~i~~~aG~Ei~Va  397 (608)
                      .+.+..|-|+==+
T Consensus       436 gl~l~~~~~iidp  448 (702)
T PRK05632        436 GVDLPDGLEIIDP  448 (702)
T ss_pred             CCCCCCCCEEECC
T ss_conf             9997579889897


No 276
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.41  E-value=21  Score=14.96  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf             889999999982798-08999565
Q gi|254780943|r  526 QKTLSNIQEIVTRGG-RVIFITDE  548 (608)
Q Consensus       526 ~k~~s~~~Ei~arg~-~vi~I~~~  548 (608)
                      ..+...++++...++ .++.||.+
T Consensus       177 ~~i~~ll~~L~~~~~~Tii~iTHd  200 (277)
T PRK13642        177 SEIMRVIHEIKDKYHLTVLSITHD  200 (277)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             999999999998169899999458


No 277
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=33.30  E-value=29  Score=13.92  Aligned_cols=53  Identities=13%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             CCEEEEE-----CCCCCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             5505775-----26788189999999986302---44246511787631000241013674
Q gi|254780943|r  338 KWASLFI-----SQSGETADTLASLRYMRTQG---LTIGSLVNVLESTIARESDFIFPIKA  390 (608)
Q Consensus       338 ~tlvI~i-----SQSGeT~dti~Al~~ak~~g---~~tiaItN~~~S~la~~aD~~i~~~a  390 (608)
                      ++|++..     .+|+.|.++.++++.-++.|   .+.+..+..--|..++.||++||-..
T Consensus       423 k~L~~~~aN~~w~s~~n~~~v~~~L~d~d~~g~~KipfIVv~D~f~SETa~yADlILPdTT  483 (679)
T cd02763         423 DTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAFADLVLPDTT  483 (679)
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCEEECCCC
T ss_conf             1444631353213688828899874411334243577699982666705652738704775


No 278
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors.  The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan.  The pigment precursors are encoded by the white, brown, and scarlet genes, respectively.  Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan.  However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes.  Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in 
Probab=33.19  E-value=29  Score=13.91  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC
Q ss_conf             6889999999982798089995653210001346627986
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL  564 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i  564 (608)
                      ...+...+.++..+|..+++++..+....... .+.++.+
T Consensus       179 ~~~i~~~l~~l~~~~~~vi~~~H~~~~~~~~~-~Drv~vl  217 (226)
T cd03234         179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRL-FDRILLL  217 (226)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH-CCEEEEE
T ss_conf             99999999999978999999988898999997-9999999


No 279
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=32.94  E-value=29  Score=13.88  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----H-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             000241013674200110007888999999-----9-99999977621200157763227999875999
Q gi|254780943|r  379 ARESDFIFPIKAGPEIGVASTKAFTCQLLV-----L-VIMAIYAGKVRGYINEEQERELIRSLVEIPRK  441 (608)
Q Consensus       379 a~~aD~~i~~~aG~Ei~VasTKsftaql~~-----l-~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~  441 (608)
                      +|.-|..+-++|-+|-.-|||  ||+-+++     + .-++..++-.+|-+-.-.-.+.++.|..+.+.
T Consensus       195 ~rald~~LILhADH~~~NaST--ftaRvvaST~sD~ysaisaaIgaL~GPLHGGAne~vl~ml~eI~~~  261 (406)
T cd06113         195 AKLLDLCLVLHAEHGGGNNST--FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIKVMEMLEDIKEN  261 (406)
T ss_pred             HHHHHHHHHHHCCCCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999962437776016--6655553478878999999998646865458489999999999985


No 280
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=32.86  E-value=29  Score=13.87  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             CCCCCCEEEE--ECCCCCCH--HHHHHHHHHHHCCCCEEEE
Q ss_conf             3445550577--52678818--9999999986302442465
Q gi|254780943|r  334 VYSSKWASLF--ISQSGETA--DTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       334 ~~~~~tlvI~--iSQSGeT~--dti~Al~~ak~~g~~tiaI  370 (608)
                      .+.+.-+||.  -|=||+|+  -.+.+|+.+++....+++-
T Consensus        27 ~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~   67 (220)
T TIGR02982        27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ   67 (220)
T ss_pred             EECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             77176479843788984688999887625655560478220


No 281
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=32.67  E-value=30  Score=13.85  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=37.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH--CCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             510352036543079999999986256673143042010--01233445550577526788189999999
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFR--YRDFVYSSKWASLFISQSGETADTLASLR  358 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~--y~~~~~~~~tlvI~iSQSGeT~dti~Al~  358 (608)
                      --++|++++..--...+.+-.  +-.+++|.+...-++.  +.+..++.+.+.|+||-+|.+.-.-..++
T Consensus        73 ~~lviaAt~d~~ln~~i~~~a--~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir  140 (210)
T COG1648          73 AFLVIAATDDEELNERIAKAA--RERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLR  140 (210)
T ss_pred             CEEEEEECCCHHHHHHHHHHH--HHHCCCEEECCCCCCCCEEECEEECCCCEEEEEECCCCCHHHHHHHH
T ss_conf             249999169989999999999--99399356048846585660105435887999977997749999999


No 282
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=32.59  E-value=30  Score=13.84  Aligned_cols=127  Identities=21%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf             01407899999974178999998715747664521111000023565510352036543079999999986256673143
Q gi|254780943|r  244 GKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID  323 (608)
Q Consensus       244 ~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~  323 (608)
                      -+|.|+|+..+|=--.-|.|++.++..+....              --+-.+|+.|..||----=+-+-    .+-+...
T Consensus       488 Plg~y~~l~~~e~~~d~E~~~~~~~~li~~a~--------------~lNK~Vv~tG~~hy~~~~d~i~r----~il~~s~  549 (1264)
T TIGR01405       488 PLGNYAHLIEKEQVKDKEALKEIIKKLIKLAK--------------ELNKPVVATGDVHYIEPEDKIYR----KILVASQ  549 (1264)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------------HCCCEEEEECCCCCCCHHHHHHH----HHHCCCC
T ss_conf             87650789861378777789999999999998--------------61977999678421786787645----3100277


Q ss_pred             ECCHHHCCCCCCCC--CCEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCC--CCCCCC
Q ss_conf             04201001233445--550577526788189999999986302--44246511787631000241--013674
Q gi|254780943|r  324 VSSEFRYRDFVYSS--KWASLFISQSGETADTLASLRYMRTQG--LTIGSLVNVLESTIARESDF--IFPIKA  390 (608)
Q Consensus       324 ~asEf~y~~~~~~~--~tlvI~iSQSGeT~dti~Al~~ak~~g--~~tiaItN~~~S~la~~aD~--~i~~~a  390 (608)
                      --....++.....+  ++..+-=-.==+|.+.++.+-..-+.-  |.-|.|+|.-  .||...+.  +-|+.-
T Consensus       550 G~~~~~nr~~~~k~~~~~~~~P~~~~rTT~EML~ef~fLgee~~~a~eiVveNtN--~ia~~~e~~di~Pi~~  620 (1264)
T TIGR01405       550 GLENKLNRLANYKEDAREVYLPELHFRTTEEMLDEFSFLGEEKLLAREIVVENTN--KIADQIEEDDIQPIKD  620 (1264)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHCCCCH--HHHHHHCCCCCEECCC
T ss_conf             8886547666665435533387058616488999987404646766442003602--5775513058633378


No 283
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=32.50  E-value=22  Score=14.74  Aligned_cols=18  Identities=6%  Similarity=-0.014  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999998387798897
Q gi|254780943|r  581 QMIAYCTAVLIGTDVDQPR  599 (608)
Q Consensus       581 QllAy~~A~~~G~dpD~PR  599 (608)
                      --|++.+ ..+|++.+.+.
T Consensus       266 ~~l~~~L-~~~g~~~~~~~  283 (304)
T PRK13651        266 LNFVNKL-IKKGIPISKVT  283 (304)
T ss_pred             HHHHHHH-HHCCCCCCCCC
T ss_conf             9999999-97699999868


No 284
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=32.46  E-value=30  Score=13.83  Aligned_cols=37  Identities=22%  Similarity=0.092  Sum_probs=26.7

Q ss_pred             CEEEEECCCCCCH---HHHHHHHHHHHCC-CCEEEEECCCC
Q ss_conf             5057752678818---9999999986302-44246511787
Q gi|254780943|r  339 WASLFISQSGETA---DTLASLRYMRTQG-LTIGSLVNVLE  375 (608)
Q Consensus       339 tlvI~iSQSGeT~---dti~Al~~ak~~g-~~tiaItN~~~  375 (608)
                      --++++|=+||-+   +.-+-++..|+.| .+|.-|||..-
T Consensus        80 pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl  120 (296)
T COG0731          80 PDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL  120 (296)
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf             87799937988334648899999998607950899938976


No 285
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443   This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=32.39  E-value=30  Score=13.82  Aligned_cols=108  Identities=18%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             CCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCCE--------EEECC---HH-H--C-CCCCCCCCCEEEEECCCCC
Q ss_conf             235655103520-365430799999999862566731--------43042---01-0--0-1233445550577526788
Q gi|254780943|r  286 DFANISGLLVSS-CGTSYLAGLVGKFWFERLARLKVE--------IDVSS---EF-R--Y-RDFVYSSKWASLFISQSGE  349 (608)
Q Consensus       286 ~~~~~~~I~~vG-cGTSy~Aal~~~~~~e~~~~i~v~--------v~~as---Ef-~--y-~~~~~~~~tlvI~iSQSGe  349 (608)
                      ...+.+.|.+++ +-=+==+|+..+-|+..|.=.++.        +-+||   -| |  . .+-+.-+|+=+| +=|.|.
T Consensus       163 vVNRcd~i~~~~~sam~NEe~wl~~kw~r~LGl~~~e~QA~i~H~pTVAsLApsfGRGAMTNnWvDikNsdli-~v~GgN  241 (1043)
T TIGR01553       163 VVNRCDSIAIVVASAMDNEEAWLTQKWLRALGLVAVENQARICHAPTVASLAPSFGRGAMTNNWVDIKNSDLI-LVMGGN  241 (1043)
T ss_pred             EEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEE-EECCCC
T ss_conf             7864233366763253036899999999870621211036023433155431555766642551411036688-971778


Q ss_pred             CHHH----HHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1899----99999986-3024424651178763100024101367420011
Q gi|254780943|r  350 TADT----LASLRYMR-TQGLTIGSLVNVLESTIARESDFIFPIKAGPEIG  395 (608)
Q Consensus       350 T~dt----i~Al~~ak-~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~  395 (608)
                      =+|-    ..-+=.|| ++||++|.|==.= .-=|-.||...+++.|-.|+
T Consensus       242 PAEnHP~gFkWai~Akek~GAkiI~iDPRf-nRTa~vaDl~apiRsGsDIa  291 (1043)
T TIGR01553       242 PAENHPVGFKWAIKAKEKKGAKIIVIDPRF-NRTAAVADLYAPIRSGSDIA  291 (1043)
T ss_pred             CCCCCCCCCEEHHHHHCCCCCEEEEECCCC-CCCHHHCEEEEECCCCCHHH
T ss_conf             720267651002211113787799978898-71010011332168983388


No 286
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.31  E-value=30  Score=13.81  Aligned_cols=59  Identities=15%  Similarity=0.121  Sum_probs=38.1

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHH
Q ss_conf             752678818999999998630244246511787631000241013674200---11000788899
Q gi|254780943|r  343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTC  404 (608)
Q Consensus       343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsfta  404 (608)
                      +-=-||+|.+.+..++..+.+|.+++..+-..++   |..-..+--++|.+   +.+.+++....
T Consensus        11 gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~---R~~~~~V~Sr~G~~~~A~~i~~~~~i~~   72 (201)
T COG1435          11 GPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT---RYGVGKVSSRIGLSSEAVVIPSDTDIFD   72 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCEEEECCCCCCCCEECCCHHHHHH
T ss_conf             1576863599999999999759808998525335---3564336531587665356387578999


No 287
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=31.96  E-value=29  Score=13.92  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=17.6

Q ss_pred             EEEECCCCCCCCCCCEEEECCCCEEEEEE
Q ss_conf             36613762011111037982765188973
Q gi|254780943|r  187 MFVGSDVTALTLLTDKVTYMEDGDWAIIR  215 (608)
Q Consensus       187 ~~vaSd~~al~~~t~~~~~L~dgei~~i~  215 (608)
                      .++.-|..-...|+++++.|++|.++...
T Consensus       192 I~vtHDL~lA~~~cDrVivl~~GrIva~G  220 (409)
T PRK09536        192 VAAIHDLNLAARYCDELVLLADGRVHDAG  220 (409)
T ss_pred             EEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf             99956899999869999999899899871


No 288
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.84  E-value=31  Score=13.76  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHH----HHHHHHHHHHHHCCCEEE
Q ss_conf             5213664499999999999974221144232431446378807987189994480146----889999999982798089
Q gi|254780943|r  468 YVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFF----QKTLSNIQEIVTRGGRVI  543 (608)
Q Consensus       468 ~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~----~k~~s~~~Ei~arg~~vi  543 (608)
                      ++|.|.+-+-|++-|.+.-.               +|+-   .....++++.+++...    .......++++..|-.++
T Consensus        83 y~gG~T~tg~AL~~a~~~~~---------------~~~r---~~~~kvlvliTDG~S~~~~~~~~~~aa~~lr~~GV~if  144 (186)
T cd01480          83 YIGGGTFTDCALKYATEQLL---------------EGSH---QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIF  144 (186)
T ss_pred             CCCCCCHHHHHHHHHHHHHH---------------HCCC---CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             35898629999999999986---------------1367---89853899984587666740669999999998798999


Q ss_pred             EEE
Q ss_conf             995
Q gi|254780943|r  544 FIT  546 (608)
Q Consensus       544 ~I~  546 (608)
                      +|+
T Consensus       145 aVG  147 (186)
T cd01480         145 FVA  147 (186)
T ss_pred             EEE
T ss_conf             999


No 289
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=31.82  E-value=30  Score=13.79  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             6889999999982798089995653
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDEE  549 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~~  549 (608)
                      ...+...++++..+|..++++|.+-
T Consensus       172 ~~~i~~ll~~l~~~g~Tii~vTHd~  196 (214)
T cd03292         172 TWEIMNLLKKINKAGTTVVVATHAK  196 (214)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             9999999999985099999989898


No 290
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=31.68  E-value=31  Score=13.74  Aligned_cols=38  Identities=11%  Similarity=0.237  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf             68899999999827980899956532100013466279868
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP  565 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP  565 (608)
                      .+.....+++++..|-.+++|+.+..  ... .+++++.+-
T Consensus       175 ~~~i~~~i~~l~~~G~Tvi~VsHd~~--~~~-~aDriivm~  212 (226)
T cd03270         175 NDRLIETLKRLRDLGNTVLVVEHDED--TIR-AADHVIDIG  212 (226)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECHH--HHH-HCCEEEEEC
T ss_conf             99999999999976998999972578--998-489999944


No 291
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.41  E-value=31  Score=13.71  Aligned_cols=18  Identities=11%  Similarity=-0.141  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHCCCCCCC
Q ss_conf             999999999838779889
Q gi|254780943|r  581 QMIAYCTAVLIGTDVDQP  598 (608)
Q Consensus       581 QllAy~~A~~~G~dpD~P  598 (608)
                      --|++.+-...|.++|..
T Consensus       247 ~~l~~~L~~~~g~~~~~~  264 (285)
T PRK13636        247 GHLMEILKEKDGFVFDEL  264 (285)
T ss_pred             HHHHHHHHHHCCCCCCCC
T ss_conf             999999988309998999


No 292
>KOG2495 consensus
Probab=31.36  E-value=31  Score=13.70  Aligned_cols=67  Identities=19%  Similarity=0.334  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             07899999974178999998715747664521111000023565510352036543--0799999999862566
Q gi|254780943|r  247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSY--LAGLVGKFWFERLARL  318 (608)
Q Consensus       247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy--~Aal~~~~~~e~~~~i  318 (608)
                      .|.|| +|||.++-+.-++++...    ++..++++.+...++.-++++||-|-+=  +||-..-|+.+.+..+
T Consensus       180 e~~~F-LKEv~dAqeIR~~~~~~l----e~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~  248 (491)
T KOG2495         180 ENAHF-LKEVEDAQEIRRKVIDNL----EKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKI  248 (491)
T ss_pred             HCHHH-HHHHHHHHHHHHHHHHHH----HHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             01046-664367999999999888----8752589985775405789998888762245677787787889986


No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=30.95  E-value=32  Score=13.66  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=23.1

Q ss_pred             CEEEECCCCCCCCCCCEEEECCCCEEEEEE
Q ss_conf             136613762011111037982765188973
Q gi|254780943|r  186 EMFVGSDVTALTLLTDKVTYMEDGDWAIIR  215 (608)
Q Consensus       186 ~~~vaSd~~al~~~t~~~~~L~dgei~~i~  215 (608)
                      -.+++-+..-+..++++++.|++|+++...
T Consensus       222 ii~isH~l~~~~~~~Drv~vl~~G~iv~~g  251 (520)
T TIGR03269       222 MVLTSHWPEVIEDLSDKAIWLENGEIKEEG  251 (520)
T ss_pred             EEEECCCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf             999748699999869999999899899993


No 294
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=30.93  E-value=32  Score=13.66  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24424651178763100024101367420011000788899999999999997762-12001577632279998759999
Q gi|254780943|r  364 GLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKV-RGYINEEQERELIRSLVEIPRKM  442 (608)
Q Consensus       364 g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~-~g~i~~~~~~~~~~~L~~lp~~i  442 (608)
                      +++.+.| ...-|.-+..||.-+++..|.+..+           ++.|. -.+... ......+.....  .....|+..
T Consensus       233 ~~rlvvv-Dpr~S~Tga~AD~~l~irPgtd~al-----------alama-~~ii~~~~~~~~~~~~~~~--~~~~~pe~~  297 (524)
T cd02764         233 MSRLVAA-ESVYTLTGANADVRLAIRPSQEKAF-----------ALGLA-HKLIKKGAGSSLPDFFRAL--NLAFKPAKV  297 (524)
T ss_pred             CCEEEEE-CCCCCCHHHHCCEEECCCCCCHHHH-----------HHHHH-HHHHHCCCCCCCHHHHHHH--HHHCCHHHH
T ss_conf             4149997-2678856875255758689719999-----------99999-9998678864336889976--411388788


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999997677446779874203614552136
Q gi|254780943|r  443 FDVLQNIYSQIEKLCCGLAKCQTLLYVGRG  472 (608)
Q Consensus       443 ~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G  472 (608)
                      .+.-....++++++|+.+.....-.++..|
T Consensus       298 ~~itgv~~~~I~~lA~~la~~~~s~vv~G~  327 (524)
T cd02764         298 AELTVDLDKALAALAKALAAAGKSLVVAGS  327 (524)
T ss_pred             HHCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             553398699999999999846996899887


No 295
>pfam08493 AflR Aflatoxin regulatory protein. This domain is found in the aflatoxin regulatory protein (AflR) which is involved in the regulation of the biosynthesis of aflatoxin in the fungal genus Aspergillus. It occurs together with the fungal Zn(2)-Cys(6) binuclear cluster domain (pfam00172).
Probab=30.76  E-value=32  Score=13.64  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             781566589999999999999998387798897
Q gi|254780943|r  567 MGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR  599 (608)
Q Consensus       567 ~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR  599 (608)
                      .++|+-.++..|.|-+|++|+|.+|+.-++.-|
T Consensus       215 ~D~YvlslvsLivlKVlgwY~Aaar~q~~~~~~  247 (275)
T pfam08493       215 QDGYVLSLVSLIVLKVLGWYVAAARDQISSTVR  247 (275)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             575026789999999999999986256786655


No 296
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine.  MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli  branched-chain amino acid transporter.  MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs.  The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=30.74  E-value=23  Score=14.67  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             688999999998279808999565
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      ...+...+.+++.+|..+++++.+
T Consensus       179 ~~~i~~~l~~l~~~G~tii~vsHd  202 (236)
T cd03219         179 TEELAELIRELRERGITVLLVEHD  202 (236)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             999999999999659999999174


No 297
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=30.57  E-value=32  Score=13.62  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=23.8

Q ss_pred             ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEEC
Q ss_conf             036543-079999999986256673143042010---0123344555057752
Q gi|254780943|r  297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFIS  345 (608)
Q Consensus       297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iS  345 (608)
                      |||||- ||..+-++     .|++  +.+|.-|.   |++ .++-.-|.|-++
T Consensus        56 GcGSSREhA~~aL~~-----~Gi~--aVIA~SFa~IF~rN-~iNnGLlpI~lP  100 (129)
T cd01674          56 GTGSSREQAATALLA-----KGIP--LVVSGSFGNIFSRN-SINNALLSIELP  100 (129)
T ss_pred             CCCCCHHHHHHHHHH-----CCCC--EEEECHHHHHHHHH-HHHCCCCEEECH
T ss_conf             767348899999998-----4997--99985299999977-787188868764


No 298
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=30.54  E-value=22  Score=14.70  Aligned_cols=26  Identities=15%  Similarity=0.158  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             99999999863024424651178763
Q gi|254780943|r  352 DTLASLRYMRTQGLTIGSLVNVLEST  377 (608)
Q Consensus       352 dti~Al~~ak~~g~~tiaItN~~~S~  377 (608)
                      ++...++..|..|++.+-+||-.+|-
T Consensus        92 ~v~~pir~lk~LGv~~li~tnAaGsl  117 (272)
T PRK08202         92 AVTFPVRVMKALGVETLIVTNAAGGL  117 (272)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             83049999998499689995687566


No 299
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.52  E-value=32  Score=13.61  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             555057752678818999999998630244246511787631000241013
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      +-+++|.|--|++..-.-.-+.. +++|++++ +.|-..++....||.+|.
T Consensus       171 ~aDlllviGTSl~V~Pa~~l~~~-~~~g~~~i-~IN~~~T~~D~~adlvI~  219 (225)
T cd01411         171 KADLLVIVGTSFVVYPFAGLIDY-RQAGANLI-AINKEPTQLDSPATLVIK  219 (225)
T ss_pred             CCCEEEEECCCCEEHHHHHHHHH-HHCCCCEE-EECCCCCCCCCCCCEEEE
T ss_conf             49999997948486416679999-87899599-989999999865338982


No 300
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=30.37  E-value=32  Score=13.59  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8999999998630244246511787
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      ..+.++++..++.|..++-|||-.+
T Consensus        32 p~V~~~L~~L~~~gY~iVIvTNQ~G   56 (158)
T pfam08645        32 PSVPEKLKKLHEDGYKIVIFTNQGG   56 (158)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             7889999999988987999947753


No 301
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.20  E-value=32  Score=13.57  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=38.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf             55505775267881899999999863024424651178763100024
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESD  383 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD  383 (608)
                      +||| |.--+.--|.+..+-+..+|+.|++.+-+.|+..+-.++.+.
T Consensus        36 DNTL-v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~   81 (175)
T COG2179          36 DNTL-VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE   81 (175)
T ss_pred             CCCE-ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf             6751-104699899999999999986597799981897888876665


No 302
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a  functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.16  E-value=33  Score=13.57  Aligned_cols=12  Identities=8%  Similarity=0.091  Sum_probs=6.8

Q ss_pred             EEEEECCCCCCH
Q ss_conf             035203654307
Q gi|254780943|r  293 LLVSSCGTSYLA  304 (608)
Q Consensus       293 I~~vGcGTSy~A  304 (608)
                      .++-++|-.-|+
T Consensus       275 ~i~~~mG~tqh~  286 (649)
T cd02752         275 TILYAMGWTQHT  286 (649)
T ss_pred             EEEECCCHHHHH
T ss_conf             899736331320


No 303
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=30.09  E-value=33  Score=13.56  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf             613661376201111103798276518897
Q gi|254780943|r  185 GEMFVGSDVTALTLLTDKVTYMEDGDWAII  214 (608)
Q Consensus       185 ~~~~vaSd~~al~~~t~~~~~L~dgei~~i  214 (608)
                      .-.|++-|..-+..++++++.|++|+++.-
T Consensus       221 tvl~ItHdl~~v~~~aDrv~Vm~~G~ive~  250 (623)
T PRK10261        221 GVIFITHDMGVVAEIADRVLVMYQGEAVET  250 (623)
T ss_pred             CCEEECCCHHHHHCCCCEEEEEECCEEEEE
T ss_conf             520553778998524774799768878985


No 304
>KOG2535 consensus
Probab=30.03  E-value=33  Score=13.55  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             CCC-CHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCCCCC-CCCCCHH
Q ss_conf             788-1899999999863024424651--178763100024101367420-0110007
Q gi|254780943|r  347 SGE-TADTLASLRYMRTQGLTIGSLV--NVLESTIARESDFIFPIKAGP-EIGVAST  399 (608)
Q Consensus       347 SGe-T~dti~Al~~ak~~g~~tiaIt--N~~~S~la~~aD~~i~~~aG~-Ei~VasT  399 (608)
                      ||- |+++-+|+++..+.-.++++||  ..|+=.+-+.-+--+..+|.. ||||-|+
T Consensus       201 SGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~  257 (554)
T KOG2535         201 SGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSV  257 (554)
T ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             278754789998740312340356896127742212669999860871378510035


No 305
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT)  (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=30.03  E-value=32  Score=13.64  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=15.1

Q ss_pred             HHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECC
Q ss_conf             98625667314304201001233445550577526
Q gi|254780943|r  312 FERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQ  346 (608)
Q Consensus       312 ~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQ  346 (608)
                      ++.+..+|=..+.|.-|...  ......|-|+--|
T Consensus        29 ~~Al~~v~Re~F~P~~fk~~--AY~~~al~ig~~q   61 (228)
T TIGR00080        29 LDALKSVPREEFVPEAFKEA--AYEDAALEIGYGQ   61 (228)
T ss_pred             HHHHHCCCCCCCCCHHHHHC--CCCCCCCCCCCCC
T ss_conf             99974187623367166637--8525520025676


No 306
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=30.02  E-value=33  Score=13.55  Aligned_cols=47  Identities=11%  Similarity=0.222  Sum_probs=34.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             55057752678818999999998630244246511787631000241013674
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA  390 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a  390 (608)
                      .+++|.+.+.=|.    -|++.|++.|.++++|+.+--.|  ...|+.||-|-
T Consensus       160 PDlvfViD~~kE~----iAV~EA~kLgIPvIaIvDTN~dP--~~IdYpIPgND  206 (332)
T PRK12311        160 PDLIFVIDTNKED----IAIQEAQRLGIPVAAIVDTNCDP--KGITYLVPGND  206 (332)
T ss_pred             CCEEEEECCCCCH----HHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCCC
T ss_conf             9989996897338----99999998097989997389998--65775684865


No 307
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=29.98  E-value=23  Score=14.56  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=23.7

Q ss_pred             ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf             036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r  297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ  346 (608)
Q Consensus       297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ  346 (608)
                      |||||- ||..+.+.     .|+.  +++|.-|.   |++.. +-.-|-|..++
T Consensus        73 GcGSSREHApwALk~-----~Gi~--~VIA~SFAdIFy~Na~-nnG~Lpi~~~~  118 (191)
T COG0066          73 GCGSSREHAPWALKD-----YGIR--AVIAPSFADIFYRNAI-NNGLLPIVLAE  118 (191)
T ss_pred             CCCCCHHHHHHHHHH-----CCEE--EEEECCHHHHHHHHHH-HCCCCCEECCH
T ss_conf             788527789999997-----5924--9993629999870156-50867555183


No 308
>KOG1985 consensus
Probab=29.71  E-value=33  Score=13.52  Aligned_cols=27  Identities=7%  Similarity=0.161  Sum_probs=11.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             876343200102677999999887512
Q gi|254780943|r  130 LLEKFIKNGSSKKETMQKLMQCLTGSY  156 (608)
Q Consensus       130 li~~~~~~~~~~~~ai~~~~~~l~G~y  156 (608)
                      ++.+....+..+-.|++.+.+.+....
T Consensus       396 ~F~~~~~t~~alGpALkaaf~li~~~G  422 (887)
T KOG1985         396 MFQDTRSTGSALGPALKAAFNLIGSTG  422 (887)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             876426764334799999999876328


No 309
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=29.54  E-value=33  Score=13.50  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCE
Q ss_conf             510352036543079999999986256673143042010012334455505775267881899999-99986302442
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLAS-LRYMRTQGLTI  367 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~A-l~~ak~~g~~t  367 (608)
                      ++|-+||+|   =|||+++|++.+ .|..|.|+.+.+-       ...-+..+|-.===..++++. ++..++.|...
T Consensus       538 kKVAVIGsG---PAGLaAA~~Lar-~Gh~VTVFEk~~~-------~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f  604 (1012)
T TIGR03315       538 HKVAVIGAG---PAGLSAGYFLAR-AGHPVTVFEKKEK-------PGGVVKNIIPEFRISAESIQKDIELVKFHGVEF  604 (1012)
T ss_pred             CEEEEECCC---HHHHHHHHHHHH-CCCCEEEEECCCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf             889998977---899999999997-7995699815897-------885478558877789999999999999689699


No 310
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304   This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified  which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=29.42  E-value=33  Score=13.49  Aligned_cols=148  Identities=14%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCC-CEEE-----ECCCCEEEEEECCCCEECCCCCCC
Q ss_conf             1222010046872389997499607760896136613762011111-0379-----827651889730574100333222
Q gi|254780943|r  155 SYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLT-DKVT-----YMEDGDWAIIRNSGLTIYDSQGYE  228 (608)
Q Consensus       155 ~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t-~~~~-----~L~dgei~~i~~~~~~i~~~~~~~  228 (608)
                      +||++++.+.-=++++.+==..=    +-+++.+=-+|..+|.+.. .++.     .++|=|+++|+.+.-+      ++
T Consensus        10 s~A~a~~~~g~a~E~vliDin~~----ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc~daD~vVITAG~~Q------KP   79 (302)
T TIGR01771        10 STAFALLNQGLADEIVLIDINKD----KAEGEAMDLQHAASFLPTPGVKVRAGDYSDCKDADLVVITAGAPQ------KP   79 (302)
T ss_pred             HHHHHHHHCCCCCEEEEEECCHH----HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCCEEEEECCCCC------CC
T ss_conf             99999973150318878834757----789878655222222378611776189799638978999327775------34


Q ss_pred             CCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC-CCCCHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf             10001100012100001407899999974178999998715747664521-11100002356551035203654307999
Q gi|254780943|r  229 IERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTI-IPNIFNYDFANISGLLVSSCGTSYLAGLV  307 (608)
Q Consensus       229 ~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~I~~vGcGTSy~Aal~  307 (608)
                      =+.+.+.++-|        ++  ++|+|-  |++.+...++.+-.-.+++ .....-+++..+.+=.++|+||..=.|- 
T Consensus        80 GEtRL~Lv~~N--------~~--I~K~Iv--~~v~k~gf~gI~lvatNPVDIlTy~~~klSGfP~~rVIGSGT~LDTaR-  146 (302)
T TIGR01771        80 GETRLELVDRN--------VK--IMKSIV--PEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTAR-  146 (302)
T ss_pred             CCCHHHHHHHH--------HH--HHHHHH--HHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH-
T ss_conf             88879999988--------99--999985--465413898479998663158999999874787200775066135589-


Q ss_pred             HHHHHHHHCCCCCEEEEC
Q ss_conf             999998625667314304
Q gi|254780943|r  308 GKFWFERLARLKVEIDVS  325 (608)
Q Consensus       308 ~~~~~e~~~~i~v~v~~a  325 (608)
                      -+|++-+.++++.+...|
T Consensus       147 fR~~l~~~~~v~p~sVha  164 (302)
T TIGR01771       147 FRYLLAEKLGVDPQSVHA  164 (302)
T ss_pred             HHHHHHHHHCCCCCCCCC
T ss_conf             999999985798442120


No 311
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=29.23  E-value=28  Score=14.03  Aligned_cols=27  Identities=11%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             818999999998630244246511787
Q gi|254780943|r  349 ETADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       349 eT~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      -..++.++++..|++|.++..+||.+.
T Consensus        25 ~~pg~~e~l~~L~~~G~~v~ivTn~~~   51 (139)
T cd01427          25 LYPGVKEALKELKEKGIKLALATNKSR   51 (139)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             985899999999987997999929889


No 312
>KOG2969 consensus
Probab=29.20  E-value=34  Score=13.46  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=9.5

Q ss_pred             CCCCCHHHHH-HHHHHHHCCCCEEEE
Q ss_conf             6788189999-999986302442465
Q gi|254780943|r  346 QSGETADTLA-SLRYMRTQGLTIGSL  370 (608)
Q Consensus       346 QSGeT~dti~-Al~~ak~~g~~tiaI  370 (608)
                      -||..+-..+ +++..-+.|..-=+|
T Consensus        44 isgkkaliaena~efVPehGFsE~aI   69 (264)
T KOG2969          44 ISGKKALIAENALEFVPEHGFSEDAI   69 (264)
T ss_pred             ECCHHHHHHHHHHHHCHHCCCCHHHH
T ss_conf             24346888898998562118868889


No 313
>PRK07116 flavodoxin; Provisional
Probab=28.73  E-value=34  Score=13.41  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             5505775267881899999999863024424651
Q gi|254780943|r  338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLV  371 (608)
Q Consensus       338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt  371 (608)
                      ++||+.-|+||.|..+-+.  .++.-|+.++-|.
T Consensus         2 K~LVvYyS~tGnTk~vA~~--I~~~~gaDi~eI~   33 (158)
T PRK07116          2 KILVAYFSATGTTKKVAEK--LAEVTGGDLYEIT   33 (158)
T ss_pred             CEEEEEECCCCCHHHHHHH--HHHHHCCCEEEEE
T ss_conf             7899998998809999999--9998799979998


No 314
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.51  E-value=35  Score=13.38  Aligned_cols=39  Identities=8%  Similarity=-0.064  Sum_probs=26.4

Q ss_pred             ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf             388999976815068999899997898897247615678887
Q gi|254780943|r   90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLL  131 (608)
Q Consensus        90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li  131 (608)
                      .-+++|+=.|+=.+..++..- .+.|..+.+  |.|+...+.
T Consensus        77 ~~d~vv~SPgI~~~~p~~~~a-~~~gi~v~~--e~el~~~~~  115 (458)
T PRK01710         77 GFDVIFKTPSMRIDSPELVKA-KEEGAYITS--EMEEFIKYC  115 (458)
T ss_pred             CCCEEEECCCCCCCCHHHHHH-HHCCCCEEC--HHHHHHHHC
T ss_conf             888899899879989999999-987993740--999998637


No 315
>PRK05868 hypothetical protein; Validated
Probab=28.47  E-value=35  Score=13.38  Aligned_cols=13  Identities=15%  Similarity=0.327  Sum_probs=5.2

Q ss_pred             EEEEECCCCHHHH
Q ss_conf             9999458658998
Q gi|254780943|r   42 IQCVRAQGKLSEL   54 (608)
Q Consensus        42 i~~~K~~g~i~~l   54 (608)
                      +.+.+..|..+.+
T Consensus        50 ~~vL~~mGl~d~~   62 (372)
T PRK05868         50 LDVLERMGLLAAA   62 (372)
T ss_pred             HHHHHHCCCHHHH
T ss_conf             9999987897899


No 316
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.33  E-value=29  Score=13.92  Aligned_cols=20  Identities=10%  Similarity=0.107  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999998387798897
Q gi|254780943|r  580 IQMIAYCTAVLIGTDVDQPR  599 (608)
Q Consensus       580 lQllAy~~A~~~G~dpD~PR  599 (608)
                      ...|++.+....|++.+.|.
T Consensus       237 ~~~l~~~L~~~~g~~~~~~~  256 (276)
T PRK13634        237 TVKFKRALEEKFGISFPKPT  256 (276)
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999896599999888


No 317
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=28.14  E-value=35  Score=13.34  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             88999999998279808999565
Q gi|254780943|r  526 QKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       526 ~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      ..+...+++++.+|-.+++++.+
T Consensus       175 ~~i~~li~~l~~~g~tvi~vtHd  197 (255)
T PRK11231        175 VELMRLMRELNTQGKTVVTVLHD  197 (255)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99999999998689999999378


No 318
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.08  E-value=28  Score=14.03  Aligned_cols=17  Identities=6%  Similarity=0.073  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             999999999983877988
Q gi|254780943|r  580 IQMIAYCTAVLIGTDVDQ  597 (608)
Q Consensus       580 lQllAy~~A~~~G~dpD~  597 (608)
                      +..|+..+ ..+|++...
T Consensus       249 ~~~l~~~L-~~~g~~~~~  265 (287)
T PRK13637        249 VTYLVRKL-RKKGFNIPD  265 (287)
T ss_pred             HHHHHHHH-HHCCCCCCC
T ss_conf             99999999-975999998


No 319
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298   This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=28.01  E-value=27  Score=14.11  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEEE--CCC-----CEEEECCCCCEEEE-
Q ss_conf             7615678887634320010267799999988751222010046---872389997--499-----60776089613661-
Q gi|254780943|r  122 TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED---DPHSIIVAR--KGP-----PLIIGHGEGEMFVG-  190 (608)
Q Consensus       122 tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~---~p~~i~~ar--~gs-----PL~iG~~~~~~~va-  190 (608)
                      .|++=+.-||+--++.=..+..       ..++.+-+.+..-+   +-++|...|  +|.     --.+-..|++..-- 
T Consensus       185 ~~~~~m~PLFd~I~~hvPaP~~-------~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk~Gq~V~~~~~d~g~~~~~  257 (609)
T TIGR01394       185 DDSEDMAPLFDAILRHVPAPKG-------DLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDDGTIENG  257 (609)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC-------CCCCCHHHEEEECCCCCCCCEEEEEEEEECEECCCCEEEEEECCCCEEEEE
T ss_conf             7220178999898640688898-------887624210001101467766999987505654686479872469689777


Q ss_pred             --CCCCCCCCCCCEEE-ECCCCEEEEEE-CCCCEE
Q ss_conf             --37620111110379-82765188973-057410
Q gi|254780943|r  191 --SDVTALTLLTDKVT-YMEDGDWAIIR-NSGLTI  221 (608)
Q Consensus       191 --Sd~~al~~~t~~~~-~L~dgei~~i~-~~~~~i  221 (608)
                        |+.-++.+..+.-+ .-+.|||+.|. -..+.|
T Consensus       258 ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~~~~I  292 (609)
T TIGR01394       258 RISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINI  292 (609)
T ss_pred             EEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCC
T ss_conf             76454201571100045579877899907798873


No 320
>pfam09194 Endonuc-BsobI Restriction endonuclease BsobI. Members of this family of prokaryotic restriction endonucleases recognize the double-stranded sequence CYCGRG (where Y = T/C, and R = A/G) and cleave after C-1. They catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates.
Probab=27.91  E-value=35  Score=13.31  Aligned_cols=118  Identities=16%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             ECCCCCCHHH---HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5267881899---9999998630244246511787631000241013674200110007888999999999999977621
Q gi|254780943|r  344 ISQSGETADT---LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVR  420 (608)
Q Consensus       344 iSQSGeT~dt---i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~  420 (608)
                      ++++-..+|.   +..+.+-.+.+.+|+-..+++ .-.-+..|.++ .+|-||. ++.-|.++  -.-.|   +.+|+.+
T Consensus       164 ~~~~~dd~eie~~lrglsW~~~~~~RTliYN~~V-pivkkNvDicL-fn~~~~~-~~~~k~~~--~~~~Y---iALGELK  235 (316)
T pfam09194       164 RDAPEDDPELELLLRGLSWLNNGQPRTLIYNNTV-PLVKKNIDICL-FNCDPTQ-LANQKILQ--SPDLY---IALGELK  235 (316)
T ss_pred             HHCCCCCHHHHHHHHCCEECCCCCCEEEEEECCC-CCCCCCCCEEE-ECCCHHH-HHHHHHHC--CHHHH---HHHHHHC
T ss_conf             5078864778999722422158984069994255-20147653698-5388787-64301213--88988---6676650


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf             200157763227999875999999999767744677987420361455213664499999
Q gi|254780943|r  421 GYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALE  480 (608)
Q Consensus       421 g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~E  480 (608)
                      |-|+....++.-+-   .    ..+|.+    +++.-.......+.||+|.-+--.+|.|
T Consensus       236 GGIDPAGADEHWKT---A----ntAL~R----ir~aF~~~~~~p~tFFIGAAIE~~MA~E  284 (316)
T pfam09194       236 GGIDPAGADEHWKT---A----NTALQR----IRDAFSKISLSPYTFFIGAAIEKSMAEE  284 (316)
T ss_pred             CCCCCCCCCHHHHH---H----HHHHHH----HHHHHHHCCCCCEEEEEHHHHHHHHHHH
T ss_conf             79898887602567---9----999999----9999984689972776358888889999


No 321
>PHA01735 hypothetical protein
Probab=27.87  E-value=35  Score=13.30  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=24.2

Q ss_pred             CCCC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             6788--18999999998630244246511787631000241
Q gi|254780943|r  346 QSGE--TADTLASLRYMRTQGLTIGSLVNVLESTIARESDF  384 (608)
Q Consensus       346 QSGe--T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~  384 (608)
                      +|||  |.|.-.|.++.|..+..-+++   .+|||...++.
T Consensus        26 ksGeAttaDL~aA~~~LKdN~I~gva~---egsPL~~La~~   63 (76)
T PHA01735         26 KSGEATTADLRAACDWLKSNDITGVAV---DGSPLAKLAGL   63 (76)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEC---CCCHHHHHHHH
T ss_conf             078887999999999999879662367---99869999875


No 322
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=27.85  E-value=22  Score=14.75  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=34.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             267881899999999863024424651178763100024101
Q gi|254780943|r  345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      .-.|-.-+|..=.+..|.-|+.+++.|+.|+-.|||++....
T Consensus       163 ~~~GP~feT~AE~r~~r~~GaDvVGMT~vPEa~LARE~gi~y  204 (290)
T PRK07432        163 CMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAY  204 (290)
T ss_pred             EEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf             833798787999999998198822687447999998759965


No 323
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=27.58  E-value=36  Score=13.27  Aligned_cols=48  Identities=17%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             EEEEECCCCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             05775267881---8999999998630244246511787631000241013
Q gi|254780943|r  340 ASLFISQSGET---ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP  387 (608)
Q Consensus       340 lvI~iSQSGeT---~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~  387 (608)
                      -|-.|...|+-   ..+-+|++.|++.|...+-|....+-|+++.-|+.=+
T Consensus        19 ~VrlI~~dG~~lGv~~~~eAl~~A~~~~LDLV~vs~~~~PPVcKi~dygK~   69 (175)
T PRK00028         19 EVRLIGDDGEQLGVVSIREALRLAEEAGLDLVEISPNAKPPVCKIMDYGKF   69 (175)
T ss_pred             EEEEECCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHH
T ss_conf             899998999698846499999999981994899878999986898507789


No 324
>PRK10908 cell division protein FtsE; Provisional
Probab=27.57  E-value=36  Score=13.27  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             46889999999982798089995653
Q gi|254780943|r  524 FFQKTLSNIQEIVTRGGRVIFITDEE  549 (608)
Q Consensus       524 ~~~k~~s~~~Ei~arg~~vi~I~~~~  549 (608)
                      ..+.....++++...|..++++|.+-
T Consensus       172 ~~~~v~~~l~~l~~~g~tvl~vtHd~  197 (222)
T PRK10908        172 LSEGILRLFEEFNRVGVTVLMATHDI  197 (222)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             99999999999986199999994799


No 325
>TIGR01070 mutS1 DNA mismatch repair protein MutS; InterPro: IPR005748   Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA.    MutS is a modular protein with a complex structure , and is composed of:    N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts.    Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts .    This entry represents a family of MutS proteins.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair.
Probab=27.26  E-value=36  Score=13.23  Aligned_cols=29  Identities=24%  Similarity=0.438  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             4101367420011000788899999999999
Q gi|254780943|r  383 DFIFPIKAGPEIGVASTKAFTCQLLVLVIMA  413 (608)
Q Consensus       383 D~~i~~~aG~Ei~VasTKsftaql~~l~lla  413 (608)
                      |..+.+=.||-.|-=||  |.=|++...+||
T Consensus       602 nr~~lliTGPNM~GKST--YmRQtALIallA  630 (863)
T TIGR01070       602 NRRLLLITGPNMGGKST--YMRQTALIALLA  630 (863)
T ss_pred             CCEEEEEECCCCCCHHH--HHHHHHHHHHHH
T ss_conf             85688886687975317--999999999999


No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=27.23  E-value=36  Score=13.23  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf             13661376201111103798276518897
Q gi|254780943|r  186 EMFVGSDVTALTLLTDKVTYMEDGDWAII  214 (608)
Q Consensus       186 ~~~vaSd~~al~~~t~~~~~L~dgei~~i  214 (608)
                      -.+++-+..-+..++++++.|+||.++.-
T Consensus       193 il~isH~l~~~~~~~Drv~vl~~G~iv~~  221 (501)
T PRK11288        193 ILYVSHRMEEIFALCDAITVFRDGRYVAT  221 (501)
T ss_pred             EEEECCCHHHHHHHCCEEEEEECCEEEEE
T ss_conf             26513328999975887897118859976


No 327
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.21  E-value=30  Score=13.76  Aligned_cols=68  Identities=15%  Similarity=-0.005  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCE
Q ss_conf             65510352036543079999999986256673143042010012334455505775267881899999-99986302442
Q gi|254780943|r  289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLAS-LRYMRTQGLTI  367 (608)
Q Consensus       289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~A-l~~ak~~g~~t  367 (608)
                      +-++|-+||+|   =|+|.++|++.+ .|..|.++.+.+-       ...-|.-+|-.-==..++++. ++..++.|...
T Consensus       438 ~GkKVAVIGsG---PAGLsaA~~La~-~G~~VtVFE~~~~-------~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~  506 (760)
T PRK12778        438 NGIKVAVIGSG---PAGLSFAGDMAK-YGYDVTVFEALHE-------IGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTF  506 (760)
T ss_pred             CCCEEEEECCC---HHHHHHHHHHHH-CCCEEEEEECCCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             89989998977---899999999997-7990699805888-------897576548611087899999999998649799


No 328
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.19  E-value=36  Score=13.22  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=25.0

Q ss_pred             ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf             3889999768150689998999978988972476156788
Q gi|254780943|r   90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIAC  129 (608)
Q Consensus        90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~  129 (608)
                      .-++.|+--|+=.+..+++. ..++|....  +|.|+.+.
T Consensus        68 ~~d~vV~SPGI~~~~p~~~~-a~~~~i~i~--~eiel~~~  104 (438)
T PRK04663         68 EADLVVTNPGIALATPEIQP-VLAKGIPVV--GDIELFAW  104 (438)
T ss_pred             CCCEEEECCCCCCCCHHHHH-HHHCCCCEE--CHHHHHHH
T ss_conf             89999989976998989999-998699370--38899976


No 329
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702    This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=27.09  E-value=37  Score=13.21  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             CC-CCEEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf             03-61455213664--49999999999997
Q gi|254780943|r  462 KC-QTLLYVGRGSS--YPLALEGALKIKEI  488 (608)
Q Consensus       462 ~~-~~~~~lG~G~~--y~~A~EgALKlkE~  488 (608)
                      +. ++..+|-.|+-  -|+++=++-+|++|
T Consensus        94 ~isenL~vi~sG~vPPNPt~LL~s~~F~~l  123 (207)
T TIGR01007        94 NISENLDVITSGPVPPNPTELLQSSNFKTL  123 (207)
T ss_pred             CCCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             546787275178878775478888999999


No 330
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=26.98  E-value=24  Score=14.54  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=34.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             67881899999999863024424651178763100024101
Q gi|254780943|r  346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      -+|-+-+|..=.+..|..|+.+++.|+.|+-.+||++....
T Consensus       156 ~~GP~fET~AEir~~r~~GaDvVGMTtvPEv~lAre~gi~y  196 (264)
T PRK07823        156 IQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCY  196 (264)
T ss_pred             EECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCE
T ss_conf             87898788999999998299984487228999998769965


No 331
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=26.83  E-value=37  Score=13.18  Aligned_cols=13  Identities=23%  Similarity=0.279  Sum_probs=9.4

Q ss_pred             CCCCEEEEECCCC
Q ss_conf             6551035203654
Q gi|254780943|r  289 NISGLLVSSCGTS  301 (608)
Q Consensus       289 ~~~~I~~vGcGTS  301 (608)
                      ...++.++|+|-+
T Consensus       144 ~~~~v~vvGgG~~  156 (364)
T TIGR03169       144 GTKRLAVVGGGAA  156 (364)
T ss_pred             CCCCEEEECCCHH
T ss_conf             9964589785817


No 332
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=26.70  E-value=37  Score=13.17  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             577526788189999999986302442465117876--3100024101367420011
Q gi|254780943|r  341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLES--TIARESDFIFPIKAGPEIG  395 (608)
Q Consensus       341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S--~la~~aD~~i~~~aG~Ei~  395 (608)
                      +++-|-||.|+=+-+.++..+++|.++..|=-...-  .-....|..-.-.||.+..
T Consensus         7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa~~~   63 (161)
T COG1763           7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQV   63 (161)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCEE
T ss_conf             996279973428999999997579379999865877777889876610003566349


No 333
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140   DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=26.68  E-value=37  Score=13.16  Aligned_cols=211  Identities=16%  Similarity=0.117  Sum_probs=84.4

Q ss_pred             CCCCCCCCEEEEECCC------CCCHHHH---HHHHHHHHCCCCCEEE----ECCH-HH-CCCCCCCCCCEEEEEC---C
Q ss_conf             0235655103520365------4307999---9999986256673143----0420-10-0123344555057752---6
Q gi|254780943|r  285 YDFANISGLLVSSCGT------SYLAGLV---GKFWFERLARLKVEID----VSSE-FR-YRDFVYSSKWASLFIS---Q  346 (608)
Q Consensus       285 ~~~~~~~~I~~vGcGT------Sy~Aal~---~~~~~e~~~~i~v~v~----~asE-f~-y~~~~~~~~tlvI~iS---Q  346 (608)
                      ....+.+-+|++|.=.      |---|+.   =+-+|+....+.-...    .--| |. |.-....++-|+|.=+   .
T Consensus       602 ~k~~n~k~~y~lG~NDGv~P~~~~e~GilsD~eR~~L~~~~q~~L~~~~~~~~~dE~Fl~Y~A~t~ase~L~~SYplaD~  681 (1192)
T TIGR02773       602 AKMSNTKVIYLLGVNDGVLPARSKEEGILSDEERELLEQKGQVELSSTSKEKLLDEQFLVYTAFTSASERLKVSYPLADA  681 (1192)
T ss_pred             EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             00058726999745776568887767754689999998516501263023321157899999870785536885213561


Q ss_pred             CCCCHHHHHHHHHHHHC--CCCEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf             78818999999998630--244246511787--63100024101367420011000788899999999999997-76212
Q gi|254780943|r  347 SGETADTLASLRYMRTQ--GLTIGSLVNVLE--STIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYA-GKVRG  421 (608)
Q Consensus       347 SGeT~dti~Al~~ak~~--g~~tiaItN~~~--S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l-~~~~g  421 (608)
                      -|++..-=.-++..++.  +.+.-.+++.++  |---+..-..-+.         .|++++..     -|..|. +....
T Consensus       682 EGk~~~pS~~i~rl~~lFp~~k~~~~~~~~~~~sD~~~l~~v~~~~---------~t~~~l~~-----~L~~w~~~~~~~  747 (1192)
T TIGR02773       682 EGKSLRPSIIIHRLKELFPKLKESLLLVEPEDVSDEEQLSYVSAKL---------PTLSELTS-----QLKKWKRGYPIS  747 (1192)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCH---------HHHHHHHH-----HHHHHCCCCCCC
T ss_conf             2412475637899998602231112010542112224576514621---------67899999-----999843156766


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC--CCCE-EEEECCCCHHHH-----HHHHHHHH
Q ss_conf             -0015776322799987599999999976------7744677987420--3614-552136644999-----99999999
Q gi|254780943|r  422 -YINEEQERELIRSLVEIPRKMFDVLQNI------YSQIEKLCCGLAK--CQTL-LYVGRGSSYPLA-----LEGALKIK  486 (608)
Q Consensus       422 -~i~~~~~~~~~~~L~~lp~~i~~~l~~~------~~~i~~~a~~~~~--~~~~-~~lG~G~~y~~A-----~EgALKlk  486 (608)
                       -+=.+.|+.+.+. ......++.+|...      ..-=+..++.|..  .+++ .=+.|=-.|.-|     -.=.||++
T Consensus       748 ~~vW~~vY~~y~~~-~~~~~~~~~vl~gL~Y~N~~~~l~~~~~~~LYgdnk~~I~~SVSRlE~Y~~CpF~hfa~yGLkl~  826 (1192)
T TIGR02773       748 DDVWWDVYQWYREE-DKWKKKLEYVLSGLVYDNKTKKLQKEKAKKLYGDNKERIQASVSRLEKYNACPFAHFAQYGLKLK  826 (1192)
T ss_pred             CCHHHHHHHHHHCC-CHHHHHHHHHHHCCEEECCCCCCCHHHHHHCCCCCCCEEEEEEECCHHHCCCCHHHHHHCCCCCC
T ss_conf             51258778886207-82212288886052221664427978997316744114723440100001783255650253200


Q ss_pred             HHHHHHCCCCCHHHCCCCCHHHHC
Q ss_conf             974221144232431446378807
Q gi|254780943|r  487 EISYLHAEGYAAGELKHGPIALIT  510 (608)
Q Consensus       487 E~syihaeg~~agE~kHGP~ali~  510 (608)
                      |=..--=|+.--|+|.|+-+..|.
T Consensus       827 ER~~Y~L~apDlG~~fH~~L~~Is  850 (1192)
T TIGR02773       827 ERKIYKLEAPDLGQLFHEALKEIS  850 (1192)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             255256799636789999999999


No 334
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=26.55  E-value=37  Score=13.15  Aligned_cols=21  Identities=10%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899999999863024424651
Q gi|254780943|r  351 ADTLASLRYMRTQGLTIGSLV  371 (608)
Q Consensus       351 ~dti~Al~~ak~~g~~tiaIt  371 (608)
                      .--|.|+++||+.+.+-+|||
T Consensus       389 EGKI~Ai~yAREN~iPFLGIC  409 (571)
T TIGR00337       389 EGKIRAIKYARENNIPFLGIC  409 (571)
T ss_pred             HHHHHHHHHHHHCCCCEEEHH
T ss_conf             247899999876369733021


No 335
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=26.48  E-value=31  Score=13.74  Aligned_cols=11  Identities=36%  Similarity=0.226  Sum_probs=4.8

Q ss_pred             EEEECCCCCCH
Q ss_conf             57752678818
Q gi|254780943|r  341 SLFISQSGETA  351 (608)
Q Consensus       341 vI~iSQSGeT~  351 (608)
                      +|+-|=||+|+
T Consensus        35 iiGpNGaGKST   45 (262)
T PRK09984         35 LLGPSGSGKST   45 (262)
T ss_pred             EECCCCCHHHH
T ss_conf             99899960999


No 336
>PRK00758 GMP synthase subunit A; Validated
Probab=26.44  E-value=38  Score=13.13  Aligned_cols=74  Identities=14%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             10352036543079999999986256673143042010012334455505775267881899999999863024424651
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV  371 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt  371 (608)
                      ||+++=+|+||.- ..+++ +++ .+..+.+... +....+ .....+- |.+|-.-...+.-.+.+..++.+.+++|||
T Consensus         1 kIlviD~~dsft~-ni~~~-l~~-~g~~v~v~~~-~~~~~~-i~~~~dg-iilS~GP~~~~~~~~~~~i~~~~iPiLGIC   74 (184)
T PRK00758          1 KILVINNGGQYNH-LIHRT-LRY-LGVDAKIIPN-TTPLEE-IKAEPDG-IILSGGPEIERAGNCEEYLLELDVPILGIC   74 (184)
T ss_pred             CEEEEECCCHHHH-HHHHH-HHH-CCCEEEEEEC-CCCHHH-HHHCCCE-EEECCCCCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf             9999989863899-99999-997-8992899959-898999-9638998-998899983332206999986599889971


No 337
>KOG0898 consensus
Probab=26.30  E-value=25  Score=14.42  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=18.6

Q ss_pred             CEEECCEEEEECCEECCHHHHHHHH
Q ss_conf             5023889999768150689998999
Q gi|254780943|r   87 PHCIEGIAVTHNGIIENFSRLKKEH  111 (608)
Q Consensus        87 P~~~~~~~vvHNG~I~N~~elr~~l  111 (608)
                      |-..|.++.||||.-.|..|+|-+.
T Consensus        94 PEMvGs~VGVyNGK~FnqvEiKPEM  118 (152)
T KOG0898          94 PEMVGSMVGVYNGKTFNQVEIKPEM  118 (152)
T ss_pred             HHHHCCEEEEECCCCCCEEECCHHH
T ss_conf             8662635777617523313314788


No 338
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=26.27  E-value=38  Score=13.11  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             8999999998279808999565321
Q gi|254780943|r  527 KTLSNIQEIVTRGGRVIFITDEEGL  551 (608)
Q Consensus       527 k~~s~~~Ei~arg~~vi~I~~~~~~  551 (608)
                      ...+.+.++|+||+.+++|+.....
T Consensus       510 AL~~Ai~~~k~rG~~vvviaHRPs~  534 (580)
T COG4618         510 ALAAAILAAKARGGTVVVIAHRPSA  534 (580)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9999999999769879999267778


No 339
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.05  E-value=38  Score=13.09  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCCCHH-HHHHHHHHHHCCCCEEE
Q ss_conf             5550577526788189-99999998630244246
Q gi|254780943|r  337 SKWASLFISQSGETAD-TLASLRYMRTQGLTIGS  369 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~d-ti~Al~~ak~~g~~tia  369 (608)
                      .+-..|+||++|+|.- ..-|++..|..+.+.+.
T Consensus       145 ADvILvGVSRtsKTPtS~YLA~q~ikaAN~PlVp  178 (273)
T COG1806         145 ADVILVGVSRTSKTPTSLYLALQGIKAANYPLVP  178 (273)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHCCHHCCCCCCC
T ss_conf             5889994046789806999987120330678578


No 340
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.04  E-value=38  Score=13.09  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf             036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r  297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ  346 (608)
Q Consensus       297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ  346 (608)
                      |||||- ||..+-+     ..|++  +..|.-|.   |++. ++-.-|.|.+++
T Consensus        28 G~GSSREhA~~al~-----~~Gi~--~VIa~SFa~If~~N~-~n~GlLpi~~~~   73 (91)
T cd01577          28 GCGSSREHAPWALK-----DAGIR--AVIAESFARIFFRNA-INNGLLPVTLAD   73 (91)
T ss_pred             CCCCCHHHHHHHHH-----HCCCE--EEEEHHHHHHHHHHH-HHCCCCEEEECH
T ss_conf             77852899999999-----84954--999723999999988-877851288688


No 341
>PRK05638 threonine synthase; Validated
Probab=25.99  E-value=38  Score=13.08  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=10.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             88189999999986302442465
Q gi|254780943|r  348 GETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       348 GeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      |.-.+...+++..|+.|-..+++
T Consensus       281 ~~P~~~~~~l~avr~sgG~~vaV  303 (443)
T PRK05638        281 KNPVMKEKVIEAIRESGGTAVVV  303 (443)
T ss_pred             CCCCCHHHHHHHHHHHCCEEEEC
T ss_conf             89889999999999839989982


No 342
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221   This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=25.90  E-value=38  Score=13.07  Aligned_cols=12  Identities=33%  Similarity=0.362  Sum_probs=6.7

Q ss_pred             HCCCCEEEEEEC
Q ss_conf             079871899944
Q gi|254780943|r  509 ITEGTFVIAIAP  520 (608)
Q Consensus       509 i~~~~~vi~i~~  520 (608)
                      |.+++-|..|-.
T Consensus       690 iKRG~~V~vI~~  701 (794)
T TIGR02865       690 IKRGAKVEVIRS  701 (794)
T ss_pred             EEECCEEEEEEE
T ss_conf             666788999862


No 343
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=25.77  E-value=22  Score=14.77  Aligned_cols=102  Identities=13%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             CCEEEEECCEECCHHHHH---HHHHH-CCCEEEE--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             889999768150689998---99997-8988972--47615678887634320010267799999988751222010046
Q gi|254780943|r   91 EGIAVTHNGIIENFSRLK---KEHFS-SQQVFLT--ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED  164 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~elr---~~l~~-~g~~f~s--~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~  164 (608)
                      ...+||-.=.++=.+.|+   ++|.. ..+.|..  ++|.+-.   ++.-+....|+.|    +..+=+|-=|+-|.-..
T Consensus       140 ~EaSlv~G~~~y~~~~L~~vv~fl~ql~~~~L~~~t~~~~~~~---~~~s~~~~~DL~d----v~GQ~~akRAleIAaAG  212 (505)
T TIGR00368       140 EEASLVDGLNVYGADHLKEVVKFLEQLGSEKLPPRTNTKAKSI---INVSLIIDLDLKD----VKGQQHAKRALEIAAAG  212 (505)
T ss_pred             CCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH---HHHCCHHHCCCCC----CCCHHHCCHHHHHHHHC
T ss_conf             5202663874020474899999997623101777545553103---4413201044322----54510110267775313


Q ss_pred             CCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf             8723899974996077608961366137620111110379827651889
Q gi|254780943|r  165 DPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAI  213 (608)
Q Consensus       165 ~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~  213 (608)
                      .-|.|++   |.|     |.|.++.+|=..+|++-      |.|-|..+
T Consensus       213 GHNlll~---GPP-----GsGKTmla~r~~giLP~------L~~~EalE  247 (505)
T TIGR00368       213 GHNLLLL---GPP-----GSGKTMLASRLQGILPP------LTNEEALE  247 (505)
T ss_pred             CCCEEEE---CCC-----CCCHHHHHHHHHCCCCC------CCCHHHHH
T ss_conf             5643767---824-----96268999875105786------45126666


No 344
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187   This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=25.68  E-value=39  Score=13.04  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             EEECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEEEC
Q ss_conf             52036543-07999999998625667314304201001233445550577526788189999-99998630244246511
Q gi|254780943|r  295 VSSCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLA-SLRYMRTQGLTIGSLVN  372 (608)
Q Consensus       295 ~vGcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~-Al~~ak~~g~~tiaItN  372 (608)
                      -+|.|||- ++.+.|+=+..+|..-.|                  +-||.-|-.|+-+..=. -+|...+.|.+++-+||
T Consensus       313 TvG~GT~~~~s~~~AkE~~~~L~~~~V------------------DaVIlTST~GTCTRCGATMVKEIERaG~PvV~~C~  374 (433)
T TIGR01918       313 TVGNGTTVAESKQFAKEFVKELLEGGV------------------DAVILTSTKGTCTRCGATMVKEIERAGIPVVHMCT  374 (433)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCC------------------CEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEECC
T ss_conf             247735578788899999999982798------------------88998168885544556200012316987476402


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCCCHH
Q ss_conf             787631000241013674200-110007
Q gi|254780943|r  373 VLESTIARESDFIFPIKAGPE-IGVAST  399 (608)
Q Consensus       373 ~~~S~la~~aD~~i~~~aG~E-i~VasT  399 (608)
                      ..-=+++--|+..+|+=+=|- .|=|||
T Consensus       375 ~~Pia~TVGAN~IvPtIaIP~PLGdPa~  402 (433)
T TIGR01918       375 VIPIALTVGANRIVPTIAIPHPLGDPAL  402 (433)
T ss_pred             EEEECCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             0100001364423363253888878768


No 345
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=25.56  E-value=39  Score=13.03  Aligned_cols=52  Identities=8%  Similarity=0.116  Sum_probs=34.0

Q ss_pred             CCCCCEEEEECCCCC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             445550577526788--1899999999863024424651178763100024101
Q gi|254780943|r  335 YSSKWASLFISQSGE--TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       335 ~~~~tlvI~iSQSGe--T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      +..-+-++..-=+|.  ..-.+.|+++||+.+.+.+|||--.+..+-..|-.++
T Consensus        53 L~~~dgilvpgGFG~rG~eGki~Ai~yARen~iPfLGIClGmQ~aviE~ARnvl  106 (235)
T cd01746          53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVL  106 (235)
T ss_pred             HHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf             730697895788887764588999999997399725441034322689998752


No 346
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=25.50  E-value=39  Score=13.02  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             555057752678818999999998630244246511787
Q gi|254780943|r  337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      .+-+.+++|++|+|+-   ++-.|. +|.++.-+-=+|+
T Consensus       138 ADiiLvGVSRtsKTP~---S~YLA~-~G~KvAN~PLvp~  172 (255)
T pfam03618       138 ADIILVGVSRTSKTPT---SLYLAN-KGIKVANYPLVPE  172 (255)
T ss_pred             CCEEEEECCCCCCCCH---HHHHHH-CCCCEEEECCCCC
T ss_conf             8899982255789837---899985-5852241167799


No 347
>TIGR02860 spore_IV_B stage IV sporulation protein B; InterPro: IPR014219   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else. The members of this entry belong to MEROPS peptidase family S55 (SpoIVB peptidase, clan PA)..
Probab=25.39  E-value=32  Score=13.59  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=20.8

Q ss_pred             CCE-----EECCEEEEECCE-ECCHHHHHHHHHHCC
Q ss_conf             750-----238899997681-506899989999789
Q gi|254780943|r   86 HPH-----CIEGIAVTHNGI-IENFSRLKKEHFSSQ  115 (608)
Q Consensus        86 hP~-----~~~~~~vvHNG~-I~N~~elr~~l~~~g  115 (608)
                      +|=     .-||..+-=||. |.+-.++.....+.|
T Consensus       142 sPg~~AGi~~GD~I~~iNg~~i~~~~d~~~~i~~~g  177 (423)
T TIGR02860       142 SPGEEAGIQIGDIILKINGEKIKNMEDIAKLINKAG  177 (423)
T ss_pred             CCHHHCCEEEEEEEEEECCCHHCCHHHHHHHHHHHH
T ss_conf             636547845610899988811035345688887543


No 348
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=25.33  E-value=39  Score=13.00  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=19.1

Q ss_pred             ECCCCEEEECCCCCEEEECCCCCC
Q ss_conf             749960776089613661376201
Q gi|254780943|r  173 RKGPPLIIGHGEGEMFVGSDVTAL  196 (608)
Q Consensus       173 r~gsPL~iG~~~~~~~vaSd~~al  196 (608)
                      +.|+||+.-+...++++.|=.++-
T Consensus        52 k~G~pLF~dK~np~i~f~SPvsG~   75 (257)
T pfam05896        52 KAGQPLFEDKKNPGVKFTAPASGT   75 (257)
T ss_pred             ECCCEEEEEECCCCCEEECCCCEE
T ss_conf             558757997369884685678738


No 349
>PRK10637 cysG siroheme synthase; Provisional
Probab=25.29  E-value=39  Score=12.99  Aligned_cols=77  Identities=14%  Similarity=0.147  Sum_probs=34.7

Q ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHHHHCCCCCEEEE---CCHHHCCCCCCCCCCEEEEECCC-CC---C-HHHHHHHH
Q ss_conf             65510352036543--0799999999862566731430---42010012334455505775267-88---1-89999999
Q gi|254780943|r  289 NISGLLVSSCGTSY--LAGLVGKFWFERLARLKVEIDV---SSEFRYRDFVYSSKWASLFISQS-GE---T-ADTLASLR  358 (608)
Q Consensus       289 ~~~~I~~vGcGTSy--~Aal~~~~~~e~~~~i~v~v~~---asEf~y~~~~~~~~tlvI~iSQS-Ge---T-~dti~Al~  358 (608)
                      +--+|+|||+|--.  .--+-+...+++   -++-++.   +.++..   ...++.-.|.+... |.   + .+..+.+.
T Consensus       214 ~~g~v~lvgaGpGd~~llT~~a~~~l~~---Advv~~d~lv~~~il~---~~~~~ae~i~vgK~~g~~~~~q~~i~~llv  287 (457)
T PRK10637        214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQ---ADVVVYDRLVSDDIMN---LVRRDADRVFVGKRAGYHCVPQEEINQILL  287 (457)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHH---CCEEEECCCCCHHHHH---HCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             8977999950899855779999999975---9999982779989996---447898899960678888878999999999


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             9863024424651
Q gi|254780943|r  359 YMRTQGLTIGSLV  371 (608)
Q Consensus       359 ~ak~~g~~tiaIt  371 (608)
                      ..-+.|-+++=+-
T Consensus       288 ~~a~~G~~VvRLk  300 (457)
T PRK10637        288 REAQKGKRVVRLK  300 (457)
T ss_pred             HHHHCCCEEEEEE
T ss_conf             9985899799984


No 350
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.23  E-value=39  Score=12.99  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHH-HCCCEEEEEECC
Q ss_conf             88999999998-279808999565
Q gi|254780943|r  526 QKTLSNIQEIV-TRGGRVIFITDE  548 (608)
Q Consensus       526 ~k~~s~~~Ei~-arg~~vi~I~~~  548 (608)
                      ..+.+.++++. ..|-.+++||.+
T Consensus       181 ~~i~~~l~~l~~e~g~TvI~itHd  204 (283)
T PRK13640        181 EQILKLIRKLMKDNNLTIISITHD  204 (283)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             999999999997069899999788


No 351
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=25.00  E-value=40  Score=12.96  Aligned_cols=48  Identities=15%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             EEEECCCCC---CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             577526788---189999999986302442465117876310002410136
Q gi|254780943|r  341 SLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI  388 (608)
Q Consensus       341 vI~iSQSGe---T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~  388 (608)
                      |-.|.+-||   ...+-+||+.|.+.|.-.+-|..+..-|.++.-|+.=+.
T Consensus        21 vrlIg~~Geq~Giv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYGKfk   71 (176)
T COG0290          21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGKFK   71 (176)
T ss_pred             EEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCHH
T ss_conf             999888996874140999999999759988998689999844862052067


No 352
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.96  E-value=40  Score=12.95  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=19.6

Q ss_pred             CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             201001233445550577526788189999999986302442
Q gi|254780943|r  326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTI  367 (608)
Q Consensus       326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~t  367 (608)
                      +||.|+..-.....++++++-... .|.-.-++..++.|...
T Consensus        26 TeF~YR~~~~~~a~vlvGi~~~~~-~d~~~l~~~L~~~gy~~   66 (68)
T cd04885          26 TEFHYRNQGGDEARVLVGIQVPDR-EDLAELKERLEALGYPY   66 (68)
T ss_pred             EEEEEEECCCCEEEEEEEEEECCH-HHHHHHHHHHHHCCCCE
T ss_conf             589997069860679999995988-88999999999839970


No 353
>pfam05176 ATP-synt_10 ATP10 protein. ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex.
Probab=24.79  E-value=26  Score=14.19  Aligned_cols=14  Identities=14%  Similarity=0.176  Sum_probs=6.9

Q ss_pred             CCCHHHHCCCCEEE
Q ss_conf             46378807987189
Q gi|254780943|r  503 HGPIALITEGTFVI  516 (608)
Q Consensus       503 HGP~ali~~~~~vi  516 (608)
                      -|-+-|||++.-+=
T Consensus       220 vGYvyLvD~~~rIR  233 (255)
T pfam05176       220 VGYVYLVDHNCRIR  233 (255)
T ss_pred             EEEEEEECCCCCEE
T ss_conf             35899987987187


No 354
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=24.68  E-value=40  Score=12.92  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             89999999982798089995653
Q gi|254780943|r  527 KTLSNIQEIVTRGGRVIFITDEE  549 (608)
Q Consensus       527 k~~s~~~Ei~arg~~vi~I~~~~  549 (608)
                      .....+++++.+|..+++||...
T Consensus       134 ~i~~~l~~l~~~~~Tvi~vtH~~  156 (173)
T cd03246         134 ALNQAIAALKAAGATRIVIAHRP  156 (173)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCH
T ss_conf             99999997864898999984799


No 355
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=24.63  E-value=40  Score=12.91  Aligned_cols=25  Identities=12%  Similarity=0.210  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             4688999999998279808999565
Q gi|254780943|r  524 FFQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       524 ~~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      ....+...+++++..|..+++++..
T Consensus       146 ~~~~i~~~l~~l~~~g~tvi~~tH~  170 (194)
T cd03213         146 SALQVMSLLRRLADTGRTIICSIHQ  170 (194)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999999999999689899999588


No 356
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=24.38  E-value=31  Score=13.67  Aligned_cols=42  Identities=14%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf             036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r  297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ  346 (608)
Q Consensus       297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ  346 (608)
                      |||||- ||..    .+.. .|++  +++|+-|.   |.+. +.-+-|.|.+++
T Consensus        78 GCGSSREhAvw----AL~d-~Gir--~VIA~SFadIF~~Nc-~kNGlLpI~L~~  123 (201)
T PRK01641         78 GCGSSREHAPW----ALAD-YGFR--VVIAPSFADIFYGNC-FKNGLLPIVLPE  123 (201)
T ss_pred             CCCCCHHHHHH----HHHH-CCCC--EEEECHHHHHHHHHH-HHCCCCEEECCH
T ss_conf             77750889999----9998-5998--999725999999889-874976065099


No 357
>KOG3015 consensus
Probab=24.18  E-value=34  Score=13.45  Aligned_cols=18  Identities=50%  Similarity=0.564  Sum_probs=13.9

Q ss_pred             CCCCCCCCCHHHHHHHHH
Q ss_conf             742001100078889999
Q gi|254780943|r  389 KAGPEIGVASTKAFTCQL  406 (608)
Q Consensus       389 ~aG~Ei~VasTKsftaql  406 (608)
                      .+|-|.+|+++|+|...+
T Consensus       208 Lagle~~v~s~KSfVia~  225 (283)
T KOG3015         208 LAGLEFAVASLKSFVIAL  225 (283)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999


No 358
>TIGR02919 TIGR02919 conserved hypothetical protein TIGR02919; InterPro: IPR014268   Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=24.09  E-value=41  Score=12.84  Aligned_cols=128  Identities=17%  Similarity=0.239  Sum_probs=69.8

Q ss_pred             CCHHHCCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC----------------------CCCCC
Q ss_conf             4201001233--44555057752678818999999998630244246511787----------------------63100
Q gi|254780943|r  325 SSEFRYRDFV--YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE----------------------STIAR  380 (608)
Q Consensus       325 asEf~y~~~~--~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~----------------------S~la~  380 (608)
                      .+=|.|.-..  -..+..+| ++-|=-=.-+=+.++....-.-++.|+|--..                      ..|-+
T Consensus       273 ~lGY~Y~~~k~N~~~k~~li-LTNSDQI~~le~iV~~~pd~~FhIAA~TEMS~KLm~l~~Y~NV~LYP~i~~~~i~~Lyq  351 (448)
T TIGR02919       273 QLGYLYPFKKDNKYRKQVLI-LTNSDQIEHLEEIVQALPDYEFHIAALTEMSSKLMSLSKYDNVKLYPNISRQKIQELYQ  351 (448)
T ss_pred             ECCCCCCCCCCCCCCCCEEE-ECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             24420368647678876576-03732335799999857897046543501317761578835524376777778988873


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH------HCCCHHHHH-----HHHHHHHHHHH---HHHHHHH
Q ss_conf             02410136742001100078889999999999999-776------212001577-----63227999875---9999999
Q gi|254780943|r  381 ESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIY-AGK------VRGYINEEQ-----ERELIRSLVEI---PRKMFDV  445 (608)
Q Consensus       381 ~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~-l~~------~~g~i~~~~-----~~~~~~~L~~l---p~~i~~~  445 (608)
                      .||..++++=|-||.=|==.||-=|+|.|.   .. .+.      ........+     ..++++-|+.+   +..+++.
T Consensus       352 ~cDIYLDIN~GNEil~AvR~AF~ynlLIlg---f~eT~Hn~~~i~~~N~F~~~~eitme~~~Li~~l~~l~~~~~~~~~~  428 (448)
T TIGR02919       352 LCDIYLDINHGNEILNAVRRAFEYNLLILG---FEETAHNRDFIASENIFEHNEEITMEVEQLISILKELLNDPNQFREL  428 (448)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             142344123457378899887564477777---76213553220601274565412211899999999973186679999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99767744677
Q gi|254780943|r  446 LQNIYSQIEKL  456 (608)
Q Consensus       446 l~~~~~~i~~~  456 (608)
                      |.+....+..+
T Consensus       429 L~~Q~~~A~~~  439 (448)
T TIGR02919       429 LEQQREHANEI  439 (448)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999864876


No 359
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=23.77  E-value=38  Score=13.12  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=15.3

Q ss_pred             EEEECCCCCCCCCCCEEEECCCCEEE
Q ss_conf             36613762011111037982765188
Q gi|254780943|r  187 MFVGSDVTALTLLTDKVTYMEDGDWA  212 (608)
Q Consensus       187 ~~vaSd~~al~~~t~~~~~L~dgei~  212 (608)
                      .|++--..-....++++..|..|..+
T Consensus       194 i~ITHKL~Ev~~iaDrvTVLR~Gkvv  219 (501)
T COG3845         194 IFITHKLKEVMAIADRVTVLRRGKVV  219 (501)
T ss_pred             EEEECCHHHHHHHHCEEEEEECCEEE
T ss_conf             99935089999763736998577488


No 360
>TIGR01487 SPP-like SPP-like hydrolase, Archaeal; InterPro: IPR006382   This group of Archaeal sequences is most closely related to the sucrose-phosphate phosphatases (SPP) from plants and cyanobacteria. If it should be shown that the proteins in this family possess sucrose-phosphatase activity then SPP would represent a broad family of functionally related proteins..
Probab=23.75  E-value=42  Score=12.80  Aligned_cols=39  Identities=10%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             1899999999863024424651178763100024101367
Q gi|254780943|r  350 TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK  389 (608)
Q Consensus       350 T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~  389 (608)
                      +.+.+++++.+++.|.+++-+|.+. +++++.+-..|.+.
T Consensus        22 ~~~A~e~iRk~~k~GI~V~LvtGN~-~~f~~al~~~i~~~   60 (223)
T TIGR01487        22 SLRAIEAIRKAEKKGIKVSLVTGNV-VPFARALAVLIGVS   60 (223)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHCCC
T ss_conf             8889999986752783699980882-79988888750688


No 361
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.73  E-value=42  Score=12.80  Aligned_cols=14  Identities=7%  Similarity=0.233  Sum_probs=5.4

Q ss_pred             HHHHHCCCCEEEEE
Q ss_conf             99863024424651
Q gi|254780943|r  358 RYMRTQGLTIGSLV  371 (608)
Q Consensus       358 ~~ak~~g~~tiaIt  371 (608)
                      +..+.+|++.+.++
T Consensus       114 ~~l~~r~a~sv~i~  127 (178)
T COG0634         114 DLLKERGAKSVRIA  127 (178)
T ss_pred             HHHHHCCCCEEEEE
T ss_conf             99975699768999


No 362
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.56  E-value=42  Score=12.78  Aligned_cols=23  Identities=0%  Similarity=-0.117  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99999999998387798897986
Q gi|254780943|r  580 IQMIAYCTAVLIGTDVDQPRNLA  602 (608)
Q Consensus       580 lQllAy~~A~~~G~dpD~PRnLa  602 (608)
                      +.-|++.+-...|++...|+.+-
T Consensus       241 ~~~l~~~L~~~~~~~~~~~~t~~  263 (275)
T PRK13639        241 VAHLIELLNKEDNLGIKMGYTIG  263 (275)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             99999999753699888874699


No 363
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782    This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=23.47  E-value=42  Score=12.76  Aligned_cols=116  Identities=8%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHCHHHHHHHH--HC---CCC-----CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHH---HHHH
Q ss_conf             8999999741789999987--15---747-----664521111000023565510352036543079999999---9862
Q gi|254780943|r  249 RHFMEKEIYEQPEAISRVL--SH---YIN-----LSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFW---FERL  315 (608)
Q Consensus       249 ~hfm~kEI~EQP~~l~~~i--~~---~~~-----~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~---~e~~  315 (608)
                      ..+-.++|..-++.+++.-  ++   |.+     ..+....++..+.-+++..+|.+-|.=...-... -+..   ++++
T Consensus       359 ~~~~~~~~~~c~~~~~k~ATLeF~RdRKSMSV~~~~~~lfvKGAPE~~L~rct~I~~~g~~VPL~~~~-k~~il~~~~~~  437 (800)
T TIGR01116       359 KSLKSRPILGCNSLWKKKATLEFTRDRKSMSVLVKSNKLFVKGAPEEVLERCTHILLKGSAVPLTEKM-KNTILASIKEM  437 (800)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCHHHHHHHCCEEEECCCCCCCCHHH-HHHHHHHHHHH
T ss_conf             76662024312566640201130565210227881651244477246772335532057013478467-89999999987


Q ss_pred             CC--CCCEEEECCHHHCCCCCCCCCCEEEEECCCC----CCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             56--6731430420100123344555057752678----818999999998630244246511787
Q gi|254780943|r  316 AR--LKVEIDVSSEFRYRDFVYSSKWASLFISQSG----ETADTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       316 ~~--i~v~v~~asEf~y~~~~~~~~tlvI~iSQSG----eT~dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      +.  ++|-   |  |.|+     ++|-.+++=-=|    ==.|+-+|++.||+.|.+++-||.+--
T Consensus       438 ~~~aLRCL---A--~A~~-----~Es~Ltf~G~vGl~DPPR~EV~~ai~~CR~AGIrVImITGD~K  493 (800)
T TIGR01116       438 SSEALRCL---A--LAFK-----EESKLTFIGVVGLLDPPRPEVADAIEKCREAGIRVIMITGDNK  493 (800)
T ss_pred             HHHHHHHH---H--HEEC-----CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             64132411---0--0121-----4678678888506894816899999988737978999847982


No 364
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=23.35  E-value=43  Score=12.75  Aligned_cols=68  Identities=21%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             CCEEEEECCEEC--CHHHHHHHHHHCCC-EEEEC------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             889999768150--68999899997898-89724------------7615678887634320010267799999988751
Q gi|254780943|r   91 EGIAVTHNGIIE--NFSRLKKEHFSSQQ-VFLTE------------TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS  155 (608)
Q Consensus        91 ~~~~vvHNG~I~--N~~elr~~l~~~g~-~f~s~------------tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~  155 (608)
                      ..++++||-++.  =|.|+|.++-.+.. .|.|=            |||-     |+    +    ..++..-+.+++-|
T Consensus        59 PtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAYvp~tDty-----IE----K----dasiNdeId~mR~S  125 (663)
T COG0556          59 PTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTY-----IE----K----DASINDEIDRLRHS  125 (663)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCE-----EE----C----CCCHHHHHHHHHHH
T ss_conf             71998255547999999999768676458886400146851345777735-----75----3----65067899999999


Q ss_pred             HHHHHHCCCCCCEEEEEE
Q ss_conf             222010046872389997
Q gi|254780943|r  156 YSIAVIFEDDPHSIIVAR  173 (608)
Q Consensus       156 ya~~il~~~~p~~i~~ar  173 (608)
                      -.-.++.++  |-|++|.
T Consensus       126 At~sLleR~--DVIVVaS  141 (663)
T COG0556         126 ATRSLLERR--DVIVVAS  141 (663)
T ss_pred             HHHHHHCCC--CEEEEEE
T ss_conf             888775047--8699998


No 365
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=23.35  E-value=43  Score=12.75  Aligned_cols=13  Identities=38%  Similarity=0.189  Sum_probs=6.5

Q ss_pred             CEEEEECCCCCCH
Q ss_conf             5057752678818
Q gi|254780943|r  339 WASLFISQSGETA  351 (608)
Q Consensus       339 tlvI~iSQSGeT~  351 (608)
                      ..+++-|=||+|+
T Consensus        30 ~aliG~sGsGKST   42 (248)
T PRK11264         30 VAIIGPSGSGKTT   42 (248)
T ss_pred             EEEECCCCCCHHH
T ss_conf             9999999980999


No 366
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=23.23  E-value=31  Score=13.73  Aligned_cols=41  Identities=27%  Similarity=0.417  Sum_probs=33.4

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             67881899999999863024424651178763100024101
Q gi|254780943|r  346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      -.|-.-+|..=++..|..|+.+++.|..|+-.+||++....
T Consensus       159 ~~GPrfET~AEi~~~r~~GaDvVGMStvPEv~lAre~gi~y  199 (261)
T PRK08666        159 TEGPRFETAAEIRMYRILGGDLVGMTQVPEAVLARELEMCY  199 (261)
T ss_pred             EECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCE
T ss_conf             88998897999999998289940477357999998769967


No 367
>TIGR01138 cysM cysteine synthase B; InterPro: IPR005858    Cysteine synthase B (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK (IPR005859 from INTERPRO) in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=23.12  E-value=43  Score=12.72  Aligned_cols=89  Identities=17%  Similarity=0.102  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEECCHHH-CCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf             6543079999999986256673143042010-012334--4555057752678818999999998630244--2465117
Q gi|254780943|r  299 GTSYLAGLVGKFWFERLARLKVEIDVSSEFR-YRDFVY--SSKWASLFISQSGETADTLASLRYMRTQGLT--IGSLVNV  373 (608)
Q Consensus       299 GTSy~Aal~~~~~~e~~~~i~v~v~~asEf~-y~~~~~--~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~--tiaItN~  373 (608)
                      -||=|.+.+.+. .-.+.|.++...-|.... -+...+  ..-.|++.--..|.---..-+.+..++..-+  .+===|+
T Consensus        68 ATSGNTGIALAM-~aA~~G~~~~L~MP~N~s~ERk~~~~AyGA~L~L~~~~~G~~GA~~l~~~l~~~~~~Kyv~LDQf~N  146 (300)
T TIGR01138        68 ATSGNTGIALAM-VAALKGYKMELLMPDNVSEERKAAMKAYGAELILVDKEEGMEGARDLARELVQKGEGKYVLLDQFNN  146 (300)
T ss_pred             CCCCCHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             168867899999-9985594289977877457999999862954898442356156899999999737985699740569


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             876310002410136742001
Q gi|254780943|r  374 LESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       374 ~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      ++.+-|-      |...||||
T Consensus       147 p~Np~AH------y~sTG~EI  161 (300)
T TIGR01138       147 PDNPKAH------YYSTGPEI  161 (300)
T ss_pred             CCCCCCC------EEECCCHH
T ss_conf             8886455------33168000


No 368
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=23.11  E-value=43  Score=12.72  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             HHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999986-3024424651178763100024101367420
Q gi|254780943|r  353 TLASLRYMR-TQGLTIGSLVNVLESTIARESDFIFPIKAGP  392 (608)
Q Consensus       353 ti~Al~~ak-~~g~~tiaItN~~~S~la~~aD~~i~~~aG~  392 (608)
                      +++-++..+ +.|...+-||.+.+ ..++.||.+.-|.||.
T Consensus       192 Il~ll~~l~~e~~~siilITHDl~-vva~~aDrv~VMYaG~  231 (316)
T COG0444         192 ILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGR  231 (316)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCE
T ss_conf             999999999854978999948889-9997456689987758


No 369
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs.  Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=23.00  E-value=43  Score=12.70  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002410136742001100078889999999-----9-9999977621200157763227999875999999999767744
Q gi|254780943|r  380 RESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQI  453 (608)
Q Consensus       380 ~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i  453 (608)
                      +.-|..+-++|-+|=+-|||  ||+.++.-     | -++..++-..|-+..-.-++.++-|..+-+.+...  ...+.+
T Consensus       220 ~~l~~~liLHADHEG~N~ST--~t~rvvgStlsd~ysaiaagi~aL~GPLHGGANq~Vl~ml~~i~~~~G~~--~s~e~v  295 (427)
T cd06105         220 ELMRLYLTIHSDHEGGNVSA--HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKD--VSDEQL  295 (427)
T ss_pred             HHHHHHHHHHHHHCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCHHHH
T ss_conf             99999999976503787006--78888862587488999998887068765675899999999999971888--878999


Q ss_pred             HHHHHHHHCCCCEEEEECC
Q ss_conf             6779874203614552136
Q gi|254780943|r  454 EKLCCGLAKCQTLLYVGRG  472 (608)
Q Consensus       454 ~~~a~~~~~~~~~~~lG~G  472 (608)
                      +++.++..+.+. .+.|.|
T Consensus       296 ~~~v~~~l~~~~-~imGfG  313 (427)
T cd06105         296 REYVWKTLNSGR-VVPGYG  313 (427)
T ss_pred             HHHHHHHHCCCC-CCCCCC
T ss_conf             999998654698-424788


No 370
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=22.90  E-value=43  Score=12.69  Aligned_cols=145  Identities=14%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             CCCCCEEEECCHHHCCCCCCCCCCEEEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-----CCCCCCC
Q ss_conf             56673143042010012334455505775----26788189999999986302442465117876310-----0024101
Q gi|254780943|r  316 ARLKVEIDVSSEFRYRDFVYSSKWASLFI----SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIA-----RESDFIF  386 (608)
Q Consensus       316 ~~i~v~v~~asEf~y~~~~~~~~tlvI~i----SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la-----~~aD~~i  386 (608)
                      .||.+....+.+.......+.++|-+|.+    +-..+-.|.-...+.|+++|+.++ |=|+-.+|+-     --+|.++
T Consensus       128 ~Gi~~~~vd~~d~~~~~~ai~~~Tklv~~EspsNP~l~v~Di~~ia~iA~~~g~~~v-VDNTfatP~~~~Pl~~GaDiVv  206 (397)
T PRK07504        128 YGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAEIANQAGAKLV-VDNVFATPLFQKPLELGAHIVV  206 (397)
T ss_pred             CCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCEECCCHHHHHHHHHCCCEEE-EECCCCCCCCCCHHHHCCCEEE
T ss_conf             785899878988588997458775399985489997451371999999998299599-7366221112684562888799


Q ss_pred             CCC----CCCC---CCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             367----4200---110-00788899999999999997762120015776322799987599999999976774467798
Q gi|254780943|r  387 PIK----AGPE---IGV-ASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCC  458 (608)
Q Consensus       387 ~~~----aG~E---i~V-asTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~  458 (608)
                      .-.    +|.-   -|| +..+.|..+.+..++  ..+|   ..++..+..-.++.|+.++--+++-    .+...++|+
T Consensus       207 hS~TKyi~GHsDvlgGvv~~~~~~~~~~~~~~~--~~~G---~~~~p~~a~l~lRGL~TL~lRm~r~----~~nA~~iA~  277 (397)
T PRK07504        207 YSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF--RHTG---PSLSPFNAWVLLKGLETLAVRVRQQ----TESAAAIAD  277 (397)
T ss_pred             EECCCCCCCCCCEEEEEEECCHHHHHHHHHHHH--HHCC---CCCCHHHHHHHHCCCCCHHHHHHHH----HHHHHHHHH
T ss_conf             742521258876254699555899999999999--9718---8788378899871677299999999----999999999


Q ss_pred             HHHCCC---CEEEEE
Q ss_conf             742036---145521
Q gi|254780943|r  459 GLAKCQ---TLLYVG  470 (608)
Q Consensus       459 ~~~~~~---~~~~lG  470 (608)
                      +|....   .+++-|
T Consensus       278 ~L~~hp~V~~V~yPg  292 (397)
T PRK07504        278 FLAGHPKVARVIYPG  292 (397)
T ss_pred             HHHHCCCCCEEECCC
T ss_conf             997389955797989


No 371
>pfam08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal. This domain is found to the C-terminus of pfam02670 domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases which catalyse the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
Probab=22.80  E-value=22  Score=14.72  Aligned_cols=18  Identities=11%  Similarity=0.357  Sum_probs=13.2

Q ss_pred             CCCCCCEEEEECCCCCCH
Q ss_conf             356551035203654307
Q gi|254780943|r  287 FANISGLLVSSCGTSYLA  304 (608)
Q Consensus       287 ~~~~~~I~~vGcGTSy~A  304 (608)
                      ..++++|+++|+|..+.-
T Consensus        20 ~~~I~kI~LTASGGPF~~   37 (84)
T pfam08436        20 KKEVEKLILTASGGPFRD   37 (84)
T ss_pred             HHHEEEEEEECCCHHHHH
T ss_conf             512007999756742650


No 372
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family; InterPro: IPR011268   This entry describes a subset of the phosphorylase family. The entry excludes the methylthioadenosine phosphorylases (MTAP, IPR010044 from INTERPRO), which are believed to play a specific role in the recycling of methionine from methylthioadenosine.    This entry consists of three clades of purine phosphorylases based on a neighbour-joining tree using the MTAP family as an out group. The highest-branching clade (IPR011269 from INTERPRO) consists of a group of sequences from both Gram-positive and Gram-negative bacteria which have been shown to act as purine nucleotide phosphorylases but whose physiological substrate and role in vivo remain unknown . Of the two remaining clades, one is xanthosine phosphorylase (XAPA, IPR010943 from INTERPRO); it is limited to certain gammaproteobacteria and constitutes a special purine phosphorylase found in a specialised operon for xanthosine catabolism . The enzyme also acts on the same purines (inosine and guanosine) as the other characterised members of this subfamily, but is only induced when xanthosine must be degraded. The remaining and largest clade consists of purine nucleotide phosphorylases (PNPH, IPR011270 from INTERPRO) from metazoa  and bacteria  which act primarily on guanosine and inosine, and do not act on adenosine. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterised with respect to substrate range. ; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=22.75  E-value=44  Score=12.67  Aligned_cols=75  Identities=23%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             CCCHHHHHHHHHHHHCCC--CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--
Q ss_conf             430799999999862566--7314304201001233445550577526788189999999986302442465117876--
Q gi|254780943|r  301 SYLAGLVGKFWFERLARL--KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLES--  376 (608)
Q Consensus       301 Sy~Aal~~~~~~e~~~~i--~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S--  376 (608)
                      |--.|-.++-+|-++.+.  ||-+ .+--|+||+-..+..+.             -..+|.+|..|++++-+||--||  
T Consensus        38 s~V~GH~G~Lv~G~Lgg~rvpV~~-m~GRfH~YEGn~d~~~v-------------t~PvR~mk~lGv~~lvvTNAAGg~n  103 (266)
T TIGR01697        38 STVVGHAGELVFGRLGGKRVPVVV-MQGRFHYYEGNYDMAAV-------------TFPVRVMKLLGVEILVVTNAAGGLN  103 (266)
T ss_pred             CCCCCCCCCEEEEEECCEEEEEEE-EECCCCCCCCCCCHHHH-------------HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             784342210577766571146888-50772356789666677-------------6899999866920899974661206


Q ss_pred             ------CCCCCCCCCCCCC
Q ss_conf             ------3100024101367
Q gi|254780943|r  377 ------TIARESDFIFPIK  389 (608)
Q Consensus       377 ------~la~~aD~~i~~~  389 (608)
                            .|...+|+.-++.
T Consensus       104 ~~~~~GdLm~i~DHIN~~~  122 (266)
T TIGR01697       104 ADFKPGDLMIIKDHINLPG  122 (266)
T ss_pred             CCCCCCCEEEEECHHHCCC
T ss_conf             7889853799711211440


No 373
>PRK06186 hypothetical protein; Validated
Probab=22.74  E-value=44  Score=12.67  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             1899999999863024424651178
Q gi|254780943|r  350 TADTLASLRYMRTQGLTIGSLVNVL  374 (608)
Q Consensus       350 T~dti~Al~~ak~~g~~tiaItN~~  374 (608)
                      +.--+.|+++||+.+.+.+|||--.
T Consensus        68 ~eGki~Ai~yARen~iP~LGICLGm   92 (229)
T PRK06186         68 EDGALTAIRFARENGIPFLGTCGGF   92 (229)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf             6389999999987699878642778


No 374
>KOG2947 consensus
Probab=22.54  E-value=44  Score=12.64  Aligned_cols=15  Identities=20%  Similarity=0.461  Sum_probs=6.5

Q ss_pred             EEEEECCCCCCHHHH
Q ss_conf             035203654307999
Q gi|254780943|r  293 LLVSSCGTSYLAGLV  307 (608)
Q Consensus       293 I~~vGcGTSy~Aal~  307 (608)
                      |-.+|.|.+++|+.+
T Consensus       254 VD~lg~~DtF~A~vI  268 (308)
T KOG2947         254 VDTLGAGDTFNAGVI  268 (308)
T ss_pred             EEEECCCCCCHHHHH
T ss_conf             123047771017889


No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.51  E-value=44  Score=12.64  Aligned_cols=27  Identities=19%  Similarity=0.505  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             146889999999982798089995653
Q gi|254780943|r  523 RFFQKTLSNIQEIVTRGGRVIFITDEE  549 (608)
Q Consensus       523 ~~~~k~~s~~~Ei~arg~~vi~I~~~~  549 (608)
                      ...+|-...++|.+..+..++.++...
T Consensus       181 ~F~~K~~~rl~e~~~~~~tiv~VSHd~  207 (249)
T COG1134         181 AFQEKCLERLNELVEKNKTIVLVSHDL  207 (249)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             999999999999997598799997887


No 376
>PRK06062 hypothetical protein; Provisional
Probab=22.28  E-value=31  Score=13.68  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=13.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf             775267881899999999863024-424651
Q gi|254780943|r  342 LFISQSGETADTLASLRYMRTQGL-TIGSLV  371 (608)
Q Consensus       342 I~iSQSGeT~dti~Al~~ak~~g~-~tiaIt  371 (608)
                      .+..+.|-++|.+-.-|-. ..|. +.-++.
T Consensus       250 fa~e~~gv~PDiv~~gK~l-~gG~~Plsav~  279 (434)
T PRK06062        250 FAIEHFDVVPDLITFAKGV-NSGYVPLGGVA  279 (434)
T ss_pred             CCCCCCCCCCCHHEEHHHH-CCCCCCEEEEE
T ss_conf             2100589797621010331-48877617887


No 377
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=22.25  E-value=45  Score=12.60  Aligned_cols=28  Identities=36%  Similarity=0.707  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf             51035203654307999999998625667314
Q gi|254780943|r  291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEI  322 (608)
Q Consensus       291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v  322 (608)
                      ..+.++|.|.|   +|.+.||+-+ .++.|-+
T Consensus        31 sDViIVGaGPs---GLtAAyyLAk-~g~kV~i   58 (262)
T COG1635          31 SDVIIVGAGPS---GLTAAYYLAK-AGLKVAI   58 (262)
T ss_pred             CCEEEECCCCC---HHHHHHHHHH-CCCEEEE
T ss_conf             26799876850---5789999986-7964999


No 378
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.04  E-value=45  Score=12.57  Aligned_cols=36  Identities=11%  Similarity=0.043  Sum_probs=18.7

Q ss_pred             CCEEEEECCEECCHH----HHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf             889999768150689----998999978988972476156788
Q gi|254780943|r   91 EGIAVTHNGIIENFS----RLKKEHFSSQQVFLTETDTEVIAC  129 (608)
Q Consensus        91 ~~~~vvHNG~I~N~~----elr~~l~~~g~~f~s~tDsEvi~~  129 (608)
                      -+..|+-=|+=.++.    .++ ...+.|....|  |.|..+.
T Consensus        66 ~~~iV~SPGIp~~~p~~~~~v~-~a~~~gi~v~s--eielf~~  105 (457)
T PRK01390         66 FAALVLSPGVPLTHPKPHWTVD-LARAAGVEVIG--DIELFCR  105 (457)
T ss_pred             CCEEEECCCCCCCCCCCHHHHH-HHHHCCCEEEE--HHHHHHH
T ss_conf             8789999988865667319999-99985991860--0899999


No 379
>pfam08981 consensus
Probab=21.96  E-value=45  Score=12.56  Aligned_cols=28  Identities=25%  Similarity=0.233  Sum_probs=12.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             526788189999999986302442465117
Q gi|254780943|r  344 ISQSGETADTLASLRYMRTQGLTIGSLVNV  373 (608)
Q Consensus       344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~  373 (608)
                      -|-||+|+.  .+++..+..+...+.+|..
T Consensus        32 ASssG~TA~--k~~e~~~~~~~~lvvVth~   59 (181)
T pfam08981        32 ASSSGETAL--KAAEALEGTNLNVVVVTHH   59 (181)
T ss_pred             EECCCHHHH--HHHHHHCCCCCEEEEEECC
T ss_conf             807877999--9998713589559999464


No 380
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.91  E-value=45  Score=12.56  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             688999999998279808999565
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      ...+...+++++..|-.+++||.+
T Consensus       188 ~~~i~~ll~~l~~~g~tii~vtHd  211 (257)
T PRK10619        188 VGEVLRIMQQLAEEGKTMVVVTHE  211 (257)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             999999999999759999999489


No 381
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.91  E-value=39  Score=13.05  Aligned_cols=19  Identities=5%  Similarity=0.085  Sum_probs=7.2

Q ss_pred             HHHHHHHHCCC--CEEEEECC
Q ss_conf             99999863024--42465117
Q gi|254780943|r  355 ASLRYMRTQGL--TIGSLVNV  373 (608)
Q Consensus       355 ~Al~~ak~~g~--~tiaItN~  373 (608)
                      +-++..++.++  +++.+.+.
T Consensus       114 ef~~~~~~~~~l~~tv~v~~t  134 (274)
T cd01132         114 QVVKTLEEHGAMEYTIVVAAT  134 (274)
T ss_pred             HHHHHHHHCCCCCCCEEEECC
T ss_conf             999987605762011477404


No 382
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952    Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate.  2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=21.87  E-value=35  Score=13.39  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             EEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCH-HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf             97305741003332221000110001210000140-78999999741789999987157476645211110000235655
Q gi|254780943|r  213 IIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGN-YRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANIS  291 (608)
Q Consensus       213 ~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~-y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  291 (608)
                      .-..+.|.+|..+-..-.++...-+.....+.+++ |.|--.+|+=.. |+|++|+.+.+..=+..+.+     .+++=+
T Consensus       103 KYGeeQV~~WRRSfDv~PPpld~~d~~~psi~~D~RYa~~~~~~lP~t-EsLk~T~~RvlPYW~d~I~p-----~l~~GK  176 (248)
T TIGR01258       103 KYGEEQVKIWRRSFDVPPPPLDEKDPRSPSIGKDPRYAGLDPKVLPLT-ESLKDTVARVLPYWNDEIAP-----ELKSGK  176 (248)
T ss_pred             HHCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCHHHEEHH-----HHHCCC
T ss_conf             606010301221357851789888776765567831005774357755-57788996506531111013-----544689


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             1035203654307999999998625
Q gi|254780943|r  292 GLLVSSCGTSYLAGLVGKFWFERLA  316 (608)
Q Consensus       292 ~I~~vGcGTSy~Aal~~~~~~e~~~  316 (608)
                      +|+|+|.|=|.=|=  +| +|+.+.
T Consensus       177 ~VLI~AHGNSLRAL--vK-hL~~~S  198 (248)
T TIGR01258       177 RVLIAAHGNSLRAL--VK-HLEGIS  198 (248)
T ss_pred             EEEEEECCHHHHHH--HH-HHHCCC
T ss_conf             79998228048999--99-861279


No 383
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=21.83  E-value=35  Score=13.36  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHH--CCCCCEEEECCHHHCCCCCCCCCCE--EEEECCCCCCHHHHHHH-HHHHH------CCCCE
Q ss_conf             799999999862--5667314304201001233445550--57752678818999999-99863------02442
Q gi|254780943|r  304 AGLVGKFWFERL--ARLKVEIDVSSEFRYRDFVYSSKWA--SLFISQSGETADTLASL-RYMRT------QGLTI  367 (608)
Q Consensus       304 Aal~~~~~~e~~--~~i~v~v~~asEf~y~~~~~~~~tl--vI~iSQSGeT~dti~Al-~~ak~------~g~~t  367 (608)
                      ||++=+|..|++  .+.|-=...|+|          +.|  .|||++  +|  ..|.| |.||+      +|=+|
T Consensus         8 A~fAEeYIveSIWn~~FPPGSiLPAE----------RELsElIGVTR--TT--LREVLQRLARDGWLTIQHGKPT   68 (275)
T TIGR02812         8 AGFAEEYIVESIWNNRFPPGSILPAE----------RELSELIGVTR--TT--LREVLQRLARDGWLTIQHGKPT   68 (275)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHH----------HHHHHHCCCCC--CH--HHHHHHHHHHHCCCCCCCCCCC
T ss_conf             42354433221016434658987246----------65754237663--03--7899988764113436588998


No 384
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=21.75  E-value=46  Score=12.54  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CCEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf             61366137620111110379827651889
Q gi|254780943|r  185 GEMFVGSDVTALTLLTDKVTYMEDGDWAI  213 (608)
Q Consensus       185 ~~~~vaSd~~al~~~t~~~~~L~dgei~~  213 (608)
                      .-.+++-|..-+..++++++.|+||.++.
T Consensus       193 til~isH~l~~~~~~~drv~vl~~G~iv~  221 (501)
T PRK10762        193 GIVYISHRMKEIFEICDDVTVLRDGQFIG  221 (501)
T ss_pred             CEEEECCCHHHHHHCCCCCEEECCCEEEE
T ss_conf             14775142576642146411312781897


No 385
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.63  E-value=46  Score=12.52  Aligned_cols=24  Identities=13%  Similarity=0.432  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             688999999998279808999565
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      .+.+...+++++..|..+++++.+
T Consensus       173 ~~~i~~~l~~l~~~g~tii~vsH~  196 (237)
T PRK11614        173 IQQIFDTIEQLREQGMTIFLVEQN  196 (237)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             999999999999679999999475


No 386
>TIGR00110 ilvD dihydroxy-acid dehydratase; InterPro: IPR004404   Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster .   This family represents dihydroxy-acid dehydratase (DAD). It contains a catalytically essential [4Fe-4S] cluster and catalyses the fourth step in valine and isoleucine biosynthesis.; GO: 0004160 dihydroxy-acid dehydratase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=21.43  E-value=29  Score=13.90  Aligned_cols=245  Identities=15%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEE-E--------CCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEE
Q ss_conf             8875122201004687238999-7--------499607760896136613762011111037982765188973057410
Q gi|254780943|r  151 CLTGSYSIAVIFEDDPHSIIVA-R--------KGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTI  221 (608)
Q Consensus       151 ~l~G~ya~~il~~~~p~~i~~a-r--------~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i  221 (608)
                      .++|.-++.==|+..|+-|.++ |        .|=|+.-|+...+.---|+...+.+--+-+....+|+|-.=..+.++-
T Consensus        96 ~~Dg~v~Ip~CDKi~PGmlMAa~RlNiP~I~V~GGPm~pG~~~~Gsskig~~~~~~s~fea~G~~~agk~~e~~l~~~E~  175 (601)
T TIGR00110        96 RFDGLVCIPSCDKITPGMLMAALRLNIPSIFVTGGPMLPGRTKLGSSKIGEKIDLVSVFEAVGEYAAGKISEEELEEIER  175 (601)
T ss_pred             HCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             16937981568973379999999718988997288787663236621015410154440201111278858889999986


Q ss_pred             ------------CCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCH-HHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf             ------------033322210001100012100001407899999974178-9999987157476645211110000235
Q gi|254780943|r  222 ------------YDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQP-EAISRVLSHYINLSDHTIIPNIFNYDFA  288 (608)
Q Consensus       222 ------------~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP-~~l~~~i~~~~~~~~~~~~~~~~~~~~~  288 (608)
                                  |+.|--..--+.-=+++.-.....-  .|==-++|.++- +.|.++++.++..++..+++.-.- ..+
T Consensus       176 ~ACPg~GSC~GmFTANtM~cLtEaLGLSLP~~~t~~A--~~~ek~~~~~~sG~~ive~~~~~i~q~D~s~LP~~I~-t~~  252 (601)
T TIGR00110       176 SACPGCGSCSGMFTANTMACLTEALGLSLPGCSTSLA--TSAEKKEIAKKSGKRIVELVKKNIKQDDESVLPRDIL-TKE  252 (601)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHC-CHH
T ss_conf             0686787554122787899999997521545645368--6878999999988999999997300141002641102-577


Q ss_pred             CCCC--EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEECCHHHCCCCCC-----CCCCE-EEEECCCCCCHHHHHHHHH
Q ss_conf             6551--0352036543079999999986256-673143042010012334-----45550-5775267881899999999
Q gi|254780943|r  289 NISG--LLVSSCGTSYLAGLVGKFWFERLAR-LKVEIDVSSEFRYRDFVY-----SSKWA-SLFISQSGETADTLASLRY  359 (608)
Q Consensus       289 ~~~~--I~~vGcGTSy~Aal~~~~~~e~~~~-i~v~v~~asEf~y~~~~~-----~~~tl-vI~iSQSGeT~dti~Al~~  359 (608)
                      -++|  .+.++.|-|=|+-|=.--.-++ ++ ++.+.+.=-|...+-|.+     ..+.. ++=+-++|-...++.-|..
T Consensus       253 AFENAi~~d~A~GGSTNTVLHllAiA~e-ag~v~~~lddfd~~s~~vP~l~~~~P~g~~~H~~DLh~AGGi~~vlk~L~~  331 (601)
T TIGR00110       253 AFENAITLDMALGGSTNTVLHLLAIANE-AGGVDLSLDDFDELSRKVPHLASLAPAGKYVHMEDLHRAGGIPAVLKELDR  331 (601)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             7889999999717960689999999610-687021765798873018736887689853789862012888899999985


Q ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCCCCCHHHHHH
Q ss_conf             8630244246511787631000241013-----------6742001100078889
Q gi|254780943|r  360 MRTQGLTIGSLVNVLESTIARESDFIFP-----------IKAGPEIGVASTKAFT  403 (608)
Q Consensus       360 ak~~g~~tiaItN~~~S~la~~aD~~i~-----------~~aG~Ei~VasTKsft  403 (608)
                      ..--.--++.|   .|.||....+.+-.           .+|||- |+-.|++|+
T Consensus       332 ~~~lh~~~~TV---tG~Tl~E~~~~~~~~~~qD~~~~~~FRaGPa-GiRttqaFs  382 (601)
T TIGR00110       332 EGLLHKDALTV---TGKTLGEIIEQAKVIPPQDEELKKFFRAGPA-GIRTTQAFS  382 (601)
T ss_pred             CCCCCCCCEEE---CCCCHHHHHHCCCCCCCHHHHHHHHHHCCCC-CCHHHHHHH
T ss_conf             35000463031---3772888885155668715899998504875-310111211


No 387
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=21.35  E-value=47  Score=12.48  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=19.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44246511787631000241013674200
Q gi|254780943|r  365 LTIGSLVNVLESTIARESDFIFPIKAGPE  393 (608)
Q Consensus       365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E  393 (608)
                      -.+|.+...++ .-++.+|.+||.-+=-|
T Consensus       462 ~~vVv~D~~~t-~Ta~~ADivLPa~~~~E  489 (765)
T COG0243         462 EFVVVIDIFMT-ETAKYADIVLPATTFLE  489 (765)
T ss_pred             CEEEEEECCCC-CHHHHHHEECCCCCCCC
T ss_conf             83999957878-32776423267776534


No 388
>pfam06718 DUF1203 Protein of unknown function (DUF1203). This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=21.17  E-value=47  Score=12.46  Aligned_cols=45  Identities=29%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             CCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             15874348999958929999458658998875210347865446510454388
Q gi|254780943|r   26 YRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHG   78 (608)
Q Consensus        26 ~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G   78 (608)
                      -||||+.|.-+  ++.+.  -. +.+....+.+..+   ..++.-|+|.|.+|
T Consensus        64 lR~Y~a~~~iv--~g~v~--~~-~~~~~~~~~~~a~---p~Va~Vhvr~a~~g  108 (116)
T pfam06718        64 LRGYNADGRIV--TGRLV--PG-GDLEAAAEELLAR---PDVAYVHVRSARNG  108 (116)
T ss_pred             EEEECCCCCEE--EEEEE--CC-CCHHHHHHHHHCC---CCEEEEEEECCCCC
T ss_conf             87107788777--41475--17-4488999998669---77028996215788


No 389
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=21.12  E-value=47  Score=12.45  Aligned_cols=83  Identities=8%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             HHHHHHHHHH-CCCCCEEE----ECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf             9999999862-56673143----042010012334455505775267881899999999863024424651178763100
Q gi|254780943|r  306 LVGKFWFERL-ARLKVEID----VSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIAR  380 (608)
Q Consensus       306 l~~~~~~e~~-~~i~v~v~----~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~  380 (608)
                      ...--.+.++ +.+|.+|.    .+.+|  -+.+...+.-.|.+= -=-|..+.+.+++.|+.|++- +|+=+|+.|+.-
T Consensus        46 p~v~~~~r~~g~~~P~DVHLMv~~pd~~--~~~Fa~aGA~~I~vH-~Ea~~h~~R~l~~Ik~~G~~A-G~v~NP~TPl~~  121 (216)
T TIGR01163        46 PPVLEALRKYGTKLPIDVHLMVENPDRY--IEDFAEAGADIITVH-AEATEHIHRLLQLIKELGAKA-GIVLNPATPLEA  121 (216)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCHHHH--HHHHHHHCCCEEEEE-CCCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHH
T ss_conf             7899988740795212663035785777--889997089989984-377626799999999718970-688679999878


Q ss_pred             ------CCCCCCCCCCCC
Q ss_conf             ------024101367420
Q gi|254780943|r  381 ------ESDFIFPIKAGP  392 (608)
Q Consensus       381 ------~aD~~i~~~aG~  392 (608)
                            .+|.+|.|..-|
T Consensus       122 ~~~~L~~~D~VLlMSVnP  139 (216)
T TIGR01163       122 LEYVLEDVDLVLLMSVNP  139 (216)
T ss_pred             HHHHHHHCCEEEEEEEEC
T ss_conf             998987629899887607


No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.09  E-value=47  Score=12.44  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             688999999998279808999565
Q gi|254780943|r  525 FQKTLSNIQEIVTRGGRVIFITDE  548 (608)
Q Consensus       525 ~~k~~s~~~Ei~arg~~vi~I~~~  548 (608)
                      .......+.+++.+|..++.++.+
T Consensus       140 ~~~i~~~i~~l~~~g~tvi~isHd  163 (182)
T cd03215         140 KAEIYRLIRELADAGKAVLLISSE  163 (182)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             999999999999789999999687


No 391
>KOG0685 consensus
Probab=21.05  E-value=47  Score=12.44  Aligned_cols=10  Identities=30%  Similarity=0.102  Sum_probs=6.2

Q ss_pred             CCEEEEEECC
Q ss_conf             8718999448
Q gi|254780943|r  512 GTFVIAIAPY  521 (608)
Q Consensus       512 ~~~vi~i~~~  521 (608)
                      +-|.|+++..
T Consensus       454 ~~p~I~FAGE  463 (498)
T KOG0685         454 GRPQILFAGE  463 (498)
T ss_pred             CCCEEEECCC
T ss_conf             8706997444


No 392
>TIGR00105 L31 ribosomal protein L31; InterPro: IPR002150   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .   Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=21.02  E-value=47  Score=12.44  Aligned_cols=19  Identities=21%  Similarity=0.408  Sum_probs=11.3

Q ss_pred             CCCCEEECCEEEE-ECCEEC
Q ss_conf             2675023889999-768150
Q gi|254780943|r   84 NSHPHCIEGIAVT-HNGIIE  102 (608)
Q Consensus        84 NahP~~~~~~~vv-HNG~I~  102 (608)
                      ++|||+.|..-++ =.|=++
T Consensus        42 ~CHPFYtG~~~~~~t~GRVe   61 (77)
T TIGR00105        42 KCHPFYTGKQKIVDTGGRVE   61 (77)
T ss_pred             CCCCCEECCEEEEECCCCHH
T ss_conf             98894204403674266413


No 393
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain .   The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=20.90  E-value=35  Score=13.36  Aligned_cols=30  Identities=17%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             CCCHHHHHHHHHHHHCCCC-----CEEEECCHHHCC
Q ss_conf             4307999999998625667-----314304201001
Q gi|254780943|r  301 SYLAGLVGKFWFERLARLK-----VEIDVSSEFRYR  331 (608)
Q Consensus       301 Sy~Aal~~~~~~e~~~~i~-----v~v~~asEf~y~  331 (608)
                      .||-|++.+.++ +..+|+     -.-+.++|..||
T Consensus       302 ~YFia~~~~FL~-~igkI~~dklRFrqH~~~E~AHY  336 (606)
T TIGR00389       302 AYFIALVKRFLL-EIGKINPDKLRFRQHLKNEMAHY  336 (606)
T ss_pred             HHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999999999998-65278878852331360045565


No 394
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=20.84  E-value=48  Score=12.41  Aligned_cols=173  Identities=14%  Similarity=0.094  Sum_probs=87.0

Q ss_pred             EECCCCCCHHH-HHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEE-C---CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             20365430799-99999986256673143042010012334455505775-2---6788189999999986302442465
Q gi|254780943|r  296 SSCGTSYLAGL-VGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFI-S---QSGETADTLASLRYMRTQGLTIGSL  370 (608)
Q Consensus       296 vGcGTSy~Aal-~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~i-S---QSGeT~dti~Al~~ak~~g~~tiaI  370 (608)
                      +.....|.... ..+.++.++ ||.+.-..+.+.......+.++|-+|.+ |   -..+-.|.-...+.|+++|+.++ +
T Consensus        92 v~~~~~Yg~t~~~~~~~l~~~-GI~~~~vd~~d~~~~~~~i~~~Tklv~~EspsNP~l~v~Di~~ia~ia~~~gi~~v-v  169 (379)
T PRK06176         92 LLGDDVYGGTFRLFDKVLVKN-GLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTI-V  169 (379)
T ss_pred             EEECCCCCCHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEE-E
T ss_conf             981898887767459876447-84999867867688996568774599997799987601585899999997698799-7


Q ss_pred             ECCCCCCCCC-----CCCCCCCCC----CCCC---CCCCHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             1178763100-----024101367----4200---110007-88899999999999997762120015776322799987
Q gi|254780943|r  371 VNVLESTIAR-----ESDFIFPIK----AGPE---IGVAST-KAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVE  437 (608)
Q Consensus       371 tN~~~S~la~-----~aD~~i~~~----aG~E---i~VasT-Ksftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~  437 (608)
                      =|+-.+|+-.     -+|.++.-.    .|.-   -|+..+ +....+.+..+.  ..+|   ..++..+..-+.+.|+.
T Consensus       170 DNT~atP~~~~Pl~~GaDiVihS~TKyi~GhsD~l~G~vv~~~~~~~~~~~~~~--~~~G---~~l~p~~a~ll~rGL~T  244 (379)
T PRK06176        170 DNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ--NAIG---GVLGPQDSWLLQRGIKT  244 (379)
T ss_pred             ECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHH--HHCC---CCCCHHHHHHHHHCCCC
T ss_conf             367215133262341898899954501147877402388349689999999999--7507---77784678999722252


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEE--ECCCCHHHHH
Q ss_conf             599999999976774467798742036---14552--1366449999
Q gi|254780943|r  438 IPRKMFDVLQNIYSQIEKLCCGLAKCQ---TLLYV--GRGSSYPLAL  479 (608)
Q Consensus       438 lp~~i~~~l~~~~~~i~~~a~~~~~~~---~~~~l--G~G~~y~~A~  479 (608)
                      ++-.+++.-    +...++|++|...+   .+++=  -..+++.+|.
T Consensus       245 L~lR~~~~~----~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~la~  287 (379)
T PRK06176        245 LGLRMEAHQ----KNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAK  287 (379)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHH
T ss_conf             899999999----9999999998719982679898999994399999


No 395
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100   This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=20.80  E-value=45  Score=12.56  Aligned_cols=13  Identities=23%  Similarity=0.181  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             0267799999988
Q gi|254780943|r  140 SKKETMQKLMQCL  152 (608)
Q Consensus       140 ~~~~ai~~~~~~l  152 (608)
                      |+.++...+.++|
T Consensus       261 ~p~~~y~~l~~EL  273 (296)
T TIGR02729       261 DPIEDYETLRNEL  273 (296)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             8899999999999


No 396
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=20.73  E-value=48  Score=12.39  Aligned_cols=10  Identities=40%  Similarity=0.684  Sum_probs=5.1

Q ss_pred             CEEEEEECCC
Q ss_conf             9299994586
Q gi|254780943|r   40 GKIQCVRAQG   49 (608)
Q Consensus        40 ~~i~~~K~~g   49 (608)
                      |.|...+..|
T Consensus        44 G~I~T~~~~g   53 (466)
T PRK12416         44 GKIHSVEEKD   53 (466)
T ss_pred             CEEEEEEECC
T ss_conf             7798997399


No 397
>PRK10372 L-ascorbate-specific enzyme IIA component of PTS; Provisional
Probab=20.72  E-value=43  Score=12.71  Aligned_cols=27  Identities=11%  Similarity=0.247  Sum_probs=14.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf             467798742036145521366449999
Q gi|254780943|r  453 IEKLCCGLAKCQTLLYVGRGSSYPLAL  479 (608)
Q Consensus       453 i~~~a~~~~~~~~~~~lG~G~~y~~A~  479 (608)
                      ++.+-+........+++|-|...|=|.
T Consensus        44 i~ami~~~~~~GpY~vi~~giAiPHa~   70 (154)
T PRK10372         44 YQAILDGVEQFGPYFVIAPGLAMPHGR   70 (154)
T ss_pred             HHHHHHHHHHHCCEEEEECCEEECCCC
T ss_conf             999999998639839971787703477


No 398
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.71  E-value=48  Score=12.39  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHCCCE---EE-ECCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH------HHHHHHHHCCCCCCEEEE
Q ss_conf             689998999978988---97-2476156788876343200-102677999999887------512220100468723899
Q gi|254780943|r  103 NFSRLKKEHFSSQQV---FL-TETDTEVIACLLEKFIKNG-SSKKETMQKLMQCLT------GSYSIAVIFEDDPHSIIV  171 (608)
Q Consensus       103 N~~elr~~l~~~g~~---f~-s~tDsEvi~~li~~~~~~~-~~~~~ai~~~~~~l~------G~ya~~il~~~~p~~i~~  171 (608)
                      |+.++|+-+  .|..   |. |.-|.=-+...++..++++ .++..+...+.+.++      -.=+.++.  -+|+.++.
T Consensus        34 narKvRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~Dk~lr~LEAmllV--ad~~~~l~  109 (178)
T COG5405          34 NARKVRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTDKYLRKLEAMLLV--ADKTHILI  109 (178)
T ss_pred             CHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE--ECCCCEEE
T ss_conf             489898760--78388874354016999999999999875680899999998756101588886624478--67885899


Q ss_pred             EE-CCC---C--EEEECCCCCEEEECCCCCCCCCCCEEEECCC-----------CEEEEEECCCCEE
Q ss_conf             97-499---6--0776089613661376201111103798276-----------5188973057410
Q gi|254780943|r  172 AR-KGP---P--LIIGHGEGEMFVGSDVTALTLLTDKVTYMED-----------GDWAIIRNSGLTI  221 (608)
Q Consensus       172 ar-~gs---P--L~iG~~~~~~~vaSd~~al~~~t~~~~~L~d-----------gei~~i~~~~~~i  221 (608)
                      .. +|-   |  =+++.|.+++|.=|-..||.++++    |..           +||++.+++.+.+
T Consensus       110 isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~----lsA~eIa~~sl~iA~eiciyTN~ni~v  172 (178)
T COG5405         110 ITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTE----LSAREIAEKSLKIAGDICIYTNHNIVV  172 (178)
T ss_pred             EECCCCEECCCCCEEEECCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHEEEEECCCCEEE
T ss_conf             952762565788868872783389999999986369----999999999986553188853995799


No 399
>PRK04296 thymidine kinase; Provisional
Probab=20.62  E-value=48  Score=12.38  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=39.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             50577526788189999999986302442465117876310002410136742001
Q gi|254780943|r  339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI  394 (608)
Q Consensus       339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei  394 (608)
                      .+.++.--||.|++.++.++..+.+|-+++.+.-..+   .|..+..+-.+.|-++
T Consensus         5 ~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D---~Ry~~~~I~Sh~g~~~   57 (197)
T PRK04296          5 YFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAID---DRYGEGKVVSRIGLSR   57 (197)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCCEECCCCCEE
T ss_conf             9999342788899999999999987995999985344---6577785786789834


No 400
>KOG0294 consensus
Probab=20.52  E-value=48  Score=12.36  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             CCCCCCEEEECCCCE-EEEEECCCCEECCCCCCCCC
Q ss_conf             111110379827651-88973057410033322210
Q gi|254780943|r  196 LTLLTDKVTYMEDGD-WAIIRNSGLTIYDSQGYEIE  230 (608)
Q Consensus       196 l~~~t~~~~~L~dge-i~~i~~~~~~i~~~~~~~~~  230 (608)
                      |..+...+..++.|| ++++..+++.+|......+-
T Consensus       167 L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~  202 (362)
T KOG0294         167 LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF  202 (362)
T ss_pred             CCCCCEEEEECCCCCEEEEEECCEEEEEECCCHHHH
T ss_conf             577520568747898799983145668960626676


No 401
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=20.52  E-value=48  Score=12.36  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=9.8

Q ss_pred             HHHHHHHHHH-HHCCCEEEEEECC
Q ss_conf             8899999999-8279808999565
Q gi|254780943|r  526 QKTLSNIQEI-VTRGGRVIFITDE  548 (608)
Q Consensus       526 ~k~~s~~~Ei-~arg~~vi~I~~~  548 (608)
                      .+++..++++ +.+|-.+++||.+
T Consensus       177 ~~il~ll~~l~~~~g~tii~vTHD  200 (254)
T PRK10418        177 ARILDLLESIVQKRALGMLLVTHD  200 (254)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             999999999999709979999699


No 402
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803   The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=20.30  E-value=49  Score=12.33  Aligned_cols=145  Identities=12%  Similarity=0.085  Sum_probs=68.4

Q ss_pred             HHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCHHHCCCCC
Q ss_conf             7417899999871574766452111100002356551035203654307999999998625667-314304201001233
Q gi|254780943|r  256 IYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSEFRYRDFV  334 (608)
Q Consensus       256 I~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asEf~y~~~~  334 (608)
                      +=|-++.+.++|++-     -..+|..++        =|+.|-||--+-.-+..      .||+ -+++.|.-+.-    
T Consensus       253 VGEp~~~m~~il~~~-----~PLlP~dKP--------RYLMGvG~p~~l~~ai~------~GiDmFDCV~PtR~aR----  309 (415)
T TIGR00430       253 VGEPKDDMLRILEHT-----APLLPKDKP--------RYLMGVGTPEDLLDAIR------RGIDMFDCVMPTRNAR----  309 (415)
T ss_pred             CCCCHHHHHHHHHHH-----HCCCCCCCC--------CCCCCCCCHHHHHHHHH------HCCCHHHCCCHHHHCC----
T ss_conf             258889988899875-----035777688--------40205488899999998------1674100452011115----


Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             4455505775267881899999999863024424651178----763100024101367420011000788899999999
Q gi|254780943|r  335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL----ESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLV  410 (608)
Q Consensus       335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~----~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~  410 (608)
                        ..+|++.-...|..            ++-..+.|=|-.    .|||.++|||..            -|.||=-.+--+
T Consensus       310 --~G~lfv~Pa~GGnv------------rnkf~~~ikNA~y~~D~~P~d~~C~Cy~------------Ck~YSRAYL~HL  363 (415)
T TIGR00430       310 --NGTLFVTPAEGGNV------------RNKFRINIKNAKYKDDTRPVDEECDCYT------------CKNYSRAYLRHL  363 (415)
T ss_pred             --CCEEEEECCCCCCC------------CCEEEEEECCCCCCCCCCCCCCCCCCCC------------CCCHHHHHHHHH
T ss_conf             --83378632788620------------1213676246463247768887777631------------441127898788


Q ss_pred             -----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf             -----999997762120015776322799987599999999976--7744677987
Q gi|254780943|r  411 -----IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNI--YSQIEKLCCG  459 (608)
Q Consensus       411 -----llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~--~~~i~~~a~~  459 (608)
                           ||.+.|+-.         . -+.-+.+|-+.+++++.+-  .+..+...++
T Consensus       364 ~r~~EllG~rL~s~---------H-Nl~f~~rL~~~iR~AI~~d~f~~F~~~f~~~  409 (415)
T TIGR00430       364 IRAKELLGARLASL---------H-NLHFLLRLMEKIRQAILEDRFLSFREEFLEK  409 (415)
T ss_pred             HHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             86317999999778---------8-9999999999998875368733058999997


No 403
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.08  E-value=49  Score=12.30  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=7.4

Q ss_pred             HHHHHHHHH-HCCCEEEEEEC
Q ss_conf             999999998-27980899956
Q gi|254780943|r  528 TLSNIQEIV-TRGGRVIFITD  547 (608)
Q Consensus       528 ~~s~~~Ei~-arg~~vi~I~~  547 (608)
                      +.+.+++++ ..|-.++++|.
T Consensus       184 i~~ll~~l~~~~g~TiI~iTH  204 (286)
T PRK13646        184 VMRLLKSLQTDENKAIILISH  204 (286)
T ss_pred             HHHHHHHHHHHCCCEEEEECC
T ss_conf             999999999953989999913


No 404
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=20.05  E-value=40  Score=12.96  Aligned_cols=40  Identities=20%  Similarity=0.373  Sum_probs=27.9

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             7881899999999863024424651178763100024101
Q gi|254780943|r  347 SGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF  386 (608)
Q Consensus       347 SGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i  386 (608)
                      .|-.-+|-.=++..|..|+.+++.|..|+-.+||+++...
T Consensus       160 ~GP~fET~AEir~~~~~GaDvVGMStvpEvilAre~gl~~  199 (245)
T PRK09136        160 QGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPY  199 (245)
T ss_pred             ECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCE
T ss_conf             7998888999999998399975577448999999779977


No 405
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=20.04  E-value=14  Score=16.16  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=18.5

Q ss_pred             CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             44555057752678818-999999998630244246511787
Q gi|254780943|r  335 YSSKWASLFISQSGETA-DTLASLRYMRTQGLTIGSLVNVLE  375 (608)
Q Consensus       335 ~~~~tlvI~iSQSGeT~-dti~Al~~ak~~g~~tiaItN~~~  375 (608)
                      .++..+.+++   |||. +++++++-.++.|+..+.|.-...
T Consensus       214 ~TKSgiMlGL---GEt~~Ev~e~m~DLr~~gvdilTiGQYlq  252 (306)
T COG0320         214 PTKSGLMVGL---GETDEEVIEVMDDLRSAGVDILTIGQYLQ  252 (306)
T ss_pred             CCCCCEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             3112135505---77689999999999985998997300147


No 406
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=20.03  E-value=50  Score=12.30  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHH
Q ss_conf             99607760896136613762011111037982765188973057410033322210001100012100001407899999
Q gi|254780943|r  175 GPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEK  254 (608)
Q Consensus       175 gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~k  254 (608)
                      ++|++  .++.-||++-...+.-...++.   ++=+++-..+++.-+. ..|....-+  .++.....-  .-||  |+|
T Consensus        30 q~~f~--~g~KlYfcTantK~~yKqik~n---p~vefcg~~kdg~~vr-lrg~a~f~~--nielkk~al--e~yP--~Lk   97 (132)
T COG5015          30 QVMFV--EGEKLYFCTANTKPYYKQIKKN---PEVEFCGMDKDGVMVR-LRGRAEFVE--NIELKKLAL--EIYP--VLK   97 (132)
T ss_pred             CCEEE--ECCEEEEEECCCHHHHHHHHHC---CCEEEEEECCCCEEEE-EEEEEEECC--CHHHHHHHH--HHCH--HHH
T ss_conf             42465--0888999917984789987539---9717987657845999-961387515--367899886--6463--567


Q ss_pred             HHHHCHH
Q ss_conf             9741789
Q gi|254780943|r  255 EIYEQPE  261 (608)
Q Consensus       255 EI~EQP~  261 (608)
                      |||+.|+
T Consensus        98 eiy~tdd  104 (132)
T COG5015          98 EIYPTDD  104 (132)
T ss_pred             HHCCCCC
T ss_conf             4120899


Done!