Query gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 608
No_of_seqs 253 out of 3612
Neff 6.7
Searched_HMMs 39220
Date Mon May 30 03:39:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780943.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01135 glmS glucosamine--fr 100.0 0 0 1726.1 48.2 607 2-608 1-628 (628)
2 PRK00331 glucosamine--fructose 100.0 0 0 1508.5 55.5 602 1-608 1-604 (604)
3 PTZ00295 glucosamine-fructose- 100.0 0 0 1480.7 53.9 598 1-608 78-691 (691)
4 COG0449 GlmS Glucosamine 6-pho 100.0 0 0 1436.0 51.3 596 1-608 1-597 (597)
5 KOG1268 consensus 100.0 0 0 1185.9 45.0 605 1-608 1-670 (670)
6 PRK11382 frlB fructoselysine-6 100.0 0 0 693.8 30.1 335 240-605 8-345 (347)
7 COG2222 AgaS Predicted phospho 100.0 0 0 475.2 27.5 334 249-607 2-339 (340)
8 cd00714 GFAT Glutamine amidotr 100.0 0 0 478.6 20.5 213 2-214 1-215 (215)
9 cd00715 GPATase_N Glutamine am 100.0 0 0 421.8 21.0 220 2-225 1-229 (252)
10 PRK08525 amidophosphoribosyltr 100.0 0 0 411.7 21.8 216 1-221 1-225 (445)
11 PRK06781 amidophosphoribosyltr 100.0 0 0 407.8 21.2 219 1-224 11-237 (471)
12 PRK07349 amidophosphoribosyltr 100.0 0 0 404.1 20.4 220 2-224 29-261 (495)
13 PRK09246 amidophosphoribosyltr 100.0 0 0 400.5 21.2 216 1-218 1-235 (503)
14 PRK07631 amidophosphoribosyltr 100.0 0 0 399.5 21.6 219 1-224 11-237 (475)
15 PRK05793 amidophosphoribosyltr 100.0 0 0 393.4 21.6 217 2-223 18-244 (472)
16 PRK06388 amidophosphoribosyltr 100.0 0 0 395.5 19.9 217 2-223 20-244 (474)
17 PRK07272 amidophosphoribosyltr 100.0 0 0 389.7 21.6 218 1-223 11-238 (484)
18 PRK09123 amidophosphoribosyltr 100.0 0 0 386.5 21.3 218 1-223 13-239 (480)
19 PRK08341 amidophosphoribosyltr 100.0 0 0 380.5 20.1 215 1-223 4-225 (442)
20 cd01907 GlxB Glutamine amidotr 100.0 0 0 373.3 19.9 210 2-214 1-249 (249)
21 PRK07847 amidophosphoribosyltr 100.0 0 0 359.8 19.0 217 4-224 1-232 (489)
22 TIGR01134 purF amidophosphorib 100.0 0 0 364.0 15.8 215 2-219 1-238 (467)
23 COG0034 PurF Glutamine phospho 100.0 0 0 356.2 19.7 219 1-223 4-236 (470)
24 pfam00310 GATase_2 Glutamine a 100.0 2.8E-45 0 334.6 15.9 189 2-193 1-223 (223)
25 KOG0572 consensus 100.0 1.3E-44 0 329.5 18.1 221 1-224 1-242 (474)
26 cd00352 Gn_AT_II Glutamine ami 100.0 8E-40 2.1E-44 296.0 19.6 209 2-212 1-220 (220)
27 cd05009 SIS_GlmS_GlmD_2 SIS (S 100.0 6E-39 1.5E-43 289.9 17.3 152 452-606 2-153 (153)
28 TIGR02815 agaS_fam putative su 100.0 2.1E-37 5.3E-42 279.2 21.2 334 250-599 3-357 (374)
29 PRK08674 bifunctional phosphog 100.0 7.6E-36 1.9E-40 268.3 26.3 305 252-598 1-316 (328)
30 cd05010 SIS_AgaS_like AgaS-lik 100.0 2E-37 5E-42 279.4 14.0 134 466-599 1-139 (151)
31 cd05008 SIS_GlmS_GlmD_1 SIS (S 100.0 1.6E-33 4E-38 252.2 10.4 126 292-417 1-126 (126)
32 TIGR01536 asn_synth_AEB aspara 100.0 1.9E-32 4.8E-37 244.7 14.5 193 2-209 1-215 (646)
33 PRK09431 asnB asparagine synth 100.0 5.8E-31 1.5E-35 234.3 14.9 178 1-219 1-188 (555)
34 TIGR03108 eps_aminotran_1 exos 100.0 7.4E-31 1.9E-35 233.6 14.3 178 1-218 1-215 (628)
35 PTZ00077 asparagine synthetase 100.0 2E-30 5.2E-35 230.6 16.1 183 1-218 1-194 (610)
36 TIGR03104 trio_amidotrans aspa 100.0 3.1E-30 8E-35 229.3 15.9 179 1-218 1-215 (589)
37 cd00712 AsnB Glutamine amidotr 100.0 2.3E-30 5.8E-35 230.2 14.7 180 2-221 1-215 (220)
38 cd05710 SIS_1 A subgroup of th 100.0 3.6E-31 9.3E-36 235.8 9.5 119 292-412 1-120 (120)
39 COG0367 AsnB Asparagine syntha 100.0 1.1E-28 2.7E-33 218.6 20.2 179 1-219 1-192 (542)
40 pfam01380 SIS SIS domain. SIS 99.9 2.8E-26 7.1E-31 201.8 11.1 128 287-414 2-130 (131)
41 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 1.1E-22 2.8E-27 176.7 11.3 169 1-210 1-179 (181)
42 cd01908 YafJ Glutamine amidotr 99.9 2.7E-21 6.9E-26 167.1 15.0 213 1-217 1-257 (257)
43 COG0067 GltB Glutamate synthas 99.9 3.2E-20 8.1E-25 159.7 15.5 170 44-217 178-369 (371)
44 TIGR03442 conserved hypothetic 99.8 1E-19 2.7E-24 156.1 16.0 216 1-222 1-249 (251)
45 KOG0571 consensus 99.8 2.5E-20 6.3E-25 160.5 9.9 180 1-221 1-189 (543)
46 cd05014 SIS_Kpsf KpsF-like pro 99.8 2E-18 5E-23 147.2 10.9 122 292-414 2-127 (128)
47 cd01909 betaLS_CarA_N Glutamin 99.7 2.6E-15 6.6E-20 125.5 12.5 120 66-199 26-148 (199)
48 PRK11557 putative DNA-binding 99.6 1.4E-14 3.7E-19 120.4 14.8 153 252-412 99-252 (282)
49 PRK11302 DNA-binding transcrip 99.6 2.1E-14 5.4E-19 119.2 12.0 127 286-417 124-255 (284)
50 cd05005 SIS_PHI Hexulose-6-pho 99.6 2.4E-14 6.2E-19 118.8 12.0 133 287-427 30-173 (179)
51 TIGR03127 RuMP_HxlB 6-phospho 99.6 2.7E-14 6.9E-19 118.4 10.6 129 286-421 26-165 (179)
52 LOAD_sis consensus 99.6 1.1E-14 2.8E-19 121.1 8.6 87 291-377 4-90 (90)
53 COG1737 RpiR Transcriptional r 99.6 2E-13 5.1E-18 112.4 14.3 167 247-419 92-260 (281)
54 COG0794 GutQ Predicted sugar p 99.6 4.1E-14 1.1E-18 117.2 10.6 132 288-422 37-174 (202)
55 PRK11337 DNA-binding transcrip 99.6 8E-14 2E-18 115.2 12.0 130 286-417 137-269 (293)
56 cd05013 SIS_RpiR RpiR-like pro 99.6 2.4E-14 6.1E-19 118.8 8.8 124 287-413 10-134 (139)
57 PRK10892 D-arabinose 5-phospha 99.5 2.1E-13 5.4E-18 112.2 13.3 177 247-430 9-189 (326)
58 PRK11543 gutQ D-arabinose 5-ph 99.5 1.5E-13 3.9E-18 113.2 11.6 141 288-430 40-184 (321)
59 COG0121 Predicted glutamine am 99.5 5.1E-13 1.3E-17 109.6 13.3 206 1-219 1-246 (252)
60 PRK05441 murQ N-acetylmuramic 99.4 1.7E-12 4.2E-17 106.0 10.5 139 286-424 54-216 (273)
61 cd05007 SIS_Etherase N-acetylm 99.4 2.9E-12 7.5E-17 104.3 11.3 140 286-425 45-208 (257)
62 PRK12570 N-acetylmuramic acid- 99.4 8.3E-12 2.1E-16 101.2 9.9 138 286-424 54-216 (296)
63 PRK11750 gltB glutamate syntha 99.3 4.8E-11 1.2E-15 95.8 13.1 220 17-255 160-432 (1483)
64 TIGR00393 kpsF sugar isomerase 99.3 5.3E-11 1.4E-15 95.5 10.9 134 292-429 2-141 (272)
65 COG2103 Predicted sugar phosph 99.3 3.6E-11 9.1E-16 96.8 9.7 167 251-423 23-217 (298)
66 pfam01380 SIS SIS domain. SIS 99.3 4.6E-11 1.2E-15 96.0 9.9 126 460-587 2-127 (131)
67 TIGR02128 G6PI_arch bifunction 99.2 1.1E-08 2.7E-13 79.6 21.1 279 287-598 24-327 (338)
68 cd00713 GltS Glutamine amidotr 99.2 1.8E-10 4.7E-15 91.8 11.0 199 17-223 148-401 (413)
69 cd04795 SIS SIS domain. SIS (S 99.2 5.9E-11 1.5E-15 95.2 7.5 79 293-371 1-81 (87)
70 TIGR00274 TIGR00274 glucokinas 99.1 6.7E-10 1.7E-14 87.9 10.9 166 252-426 21-217 (291)
71 cd05017 SIS_PGI_PMI_1 The memb 99.1 4.3E-10 1.1E-14 89.2 7.0 87 292-384 1-88 (119)
72 PRK00331 glucosamine--fructose 98.8 4.9E-07 1.3E-11 67.9 15.0 157 431-593 254-420 (604)
73 PRK11382 frlB fructoselysine-6 98.8 3.4E-07 8.7E-12 69.1 12.5 148 252-422 183-333 (347)
74 cd05710 SIS_1 A subgroup of th 98.7 1.4E-07 3.6E-12 71.7 10.0 118 465-586 1-118 (120)
75 COG0279 GmhA Phosphoheptose is 98.7 4.9E-08 1.2E-12 74.9 6.8 107 286-401 37-165 (176)
76 PRK13938 phosphoheptose isomer 98.6 1.3E-07 3.3E-12 72.0 7.5 103 286-388 41-164 (196)
77 cd05006 SIS_GmhA Phosphoheptos 98.6 1.3E-07 3.2E-12 72.0 7.2 101 287-390 30-154 (177)
78 COG2222 AgaS Predicted phospho 98.6 9.1E-06 2.3E-10 59.2 16.2 127 285-422 196-324 (340)
79 PRK00414 gmhA phosphoheptose i 98.6 2.5E-07 6.4E-12 70.0 7.9 103 286-388 40-162 (192)
80 TIGR00441 gmhA phosphoheptose 98.6 6.2E-08 1.6E-12 74.2 4.4 131 254-387 3-160 (186)
81 PTZ00295 glucosamine-fructose- 98.5 6.4E-06 1.6E-10 60.2 13.7 160 431-597 332-512 (691)
82 COG1737 RpiR Transcriptional r 98.5 1.5E-05 3.9E-10 57.5 15.1 137 450-592 117-262 (281)
83 PRK02947 hypothetical protein; 98.5 7.9E-07 2E-11 66.5 8.5 123 286-411 37-202 (247)
84 cd05005 SIS_PHI Hexulose-6-pho 98.5 1.6E-05 4.1E-10 57.4 14.5 140 450-597 20-173 (179)
85 PRK13937 phosphoheptose isomer 98.5 1E-06 2.6E-11 65.8 8.1 104 286-389 38-162 (192)
86 TIGR01135 glmS glucosamine--fr 98.4 3.1E-06 8E-11 62.4 10.3 323 191-595 83-441 (628)
87 cd05009 SIS_GlmS_GlmD_2 SIS (S 98.4 2.4E-06 6.1E-11 63.2 9.2 129 287-422 10-140 (153)
88 cd05013 SIS_RpiR RpiR-like pro 98.4 7E-06 1.8E-10 59.9 11.1 131 452-585 2-134 (139)
89 TIGR03127 RuMP_HxlB 6-phospho 98.4 1.7E-05 4.2E-10 57.3 13.0 139 451-597 18-170 (179)
90 PRK13936 phosphoheptose isomer 98.3 5.5E-06 1.4E-10 60.6 9.4 102 287-388 40-165 (197)
91 PRK11302 DNA-binding transcrip 98.3 8E-05 2E-09 52.6 14.7 112 450-565 115-226 (284)
92 cd05008 SIS_GlmS_GlmD_1 SIS (S 98.3 8.2E-06 2.1E-10 59.5 9.2 120 465-587 1-125 (126)
93 COG0449 GlmS Glucosamine 6-pho 98.2 9.8E-05 2.5E-09 51.9 13.9 131 459-592 279-414 (597)
94 PRK11337 DNA-binding transcrip 98.2 6.9E-05 1.8E-09 53.0 12.9 115 450-567 128-242 (293)
95 PRK10886 DnaA initiator-associ 98.2 1.6E-05 4.2E-10 57.4 9.0 102 286-387 37-162 (196)
96 cd01910 Wali7 This domain is p 98.2 4E-06 1E-10 61.6 5.7 132 86-228 63-204 (224)
97 PRK11557 putative DNA-binding 98.1 0.00016 4.1E-09 50.5 12.9 112 450-567 119-233 (282)
98 cd04795 SIS SIS domain. SIS (S 98.1 1.2E-05 3.2E-10 58.2 7.2 80 466-546 1-81 (87)
99 COG0166 Pgi Glucose-6-phosphat 98.0 0.00023 5.9E-09 49.3 12.7 110 289-398 78-206 (446)
100 COG4821 Uncharacterized protei 98.0 2.6E-05 6.5E-10 56.0 7.3 129 286-417 34-205 (243)
101 cd05010 SIS_AgaS_like AgaS-lik 98.0 0.00014 3.7E-09 50.8 10.6 126 293-422 1-133 (151)
102 KOG0399 consensus 98.0 0.00057 1.5E-08 46.6 13.6 213 39-268 255-519 (2142)
103 KOG0573 consensus 98.0 7.6E-05 2E-09 52.7 8.9 145 1-188 1-152 (520)
104 PRK03868 glucose-6-phosphate i 97.9 0.00017 4.3E-09 50.3 9.9 96 287-383 55-163 (409)
105 cd05014 SIS_Kpsf KpsF-like pro 97.8 0.00033 8.4E-09 48.3 10.5 102 465-569 2-103 (128)
106 pfam00342 PGI Phosphoglucose i 97.7 0.0004 1E-08 47.7 9.3 115 286-400 92-227 (483)
107 PRK08674 bifunctional phosphog 97.7 0.0018 4.6E-08 43.1 12.0 91 293-383 192-293 (328)
108 cd05015 SIS_PGI_1 Phosphogluco 97.7 0.00018 4.6E-09 50.1 6.8 93 288-381 18-125 (158)
109 PRK00179 pgi glucose-6-phospha 97.6 0.0018 4.6E-08 43.2 11.1 114 286-399 126-262 (525)
110 PRK00973 glucose-6-phosphate i 97.6 0.00064 1.6E-08 46.3 8.5 98 286-383 68-187 (454)
111 PRK11543 gutQ D-arabinose 5-ph 97.4 0.014 3.6E-07 37.0 16.4 140 454-596 32-180 (321)
112 PRK09533 bifunctional transald 97.2 0.0016 4.2E-08 43.5 6.8 108 287-395 452-577 (950)
113 PRK13937 phosphoheptose isomer 97.0 0.036 9.1E-07 34.2 16.7 142 441-584 20-181 (192)
114 PRK10892 D-arabinose 5-phospha 97.0 0.036 9.1E-07 34.1 15.1 142 452-596 35-185 (326)
115 COG0794 GutQ Predicted sugar p 97.0 0.036 9.3E-07 34.1 13.7 103 462-567 38-140 (202)
116 PRK02947 hypothetical protein; 96.7 0.054 1.4E-06 32.9 14.3 155 441-596 15-218 (247)
117 cd05006 SIS_GmhA Phosphoheptos 96.7 0.06 1.5E-06 32.6 15.2 119 449-569 19-157 (177)
118 pfam10432 bact-PGI_C Bacterial 96.2 0.11 2.7E-06 30.9 12.8 128 450-597 5-142 (154)
119 PRK10886 DnaA initiator-associ 96.1 0.12 3E-06 30.5 15.5 120 448-568 26-167 (196)
120 PRK13936 phosphoheptose isomer 96.1 0.12 3E-06 30.5 16.0 119 449-568 29-169 (197)
121 PRK00414 gmhA phosphoheptose i 95.7 0.18 4.7E-06 29.2 15.6 121 446-568 27-166 (192)
122 PRK04020 rps2P 30S ribosomal p 95.5 0.22 5.6E-06 28.7 9.8 123 291-431 68-193 (204)
123 TIGR02128 G6PI_arch bifunction 95.3 0.19 4.8E-06 29.1 8.5 57 509-566 70-127 (338)
124 PRK13938 phosphoheptose isomer 95.2 0.27 6.8E-06 28.1 14.3 120 447-568 29-168 (196)
125 KOG1268 consensus 95.0 0.31 7.8E-06 27.7 10.9 151 432-589 315-483 (670)
126 cd05017 SIS_PGI_PMI_1 The memb 94.9 0.19 4.9E-06 29.1 7.7 61 507-568 39-100 (119)
127 cd02751 MopB_DMSOR-like The Mo 94.8 0.32 8.3E-06 27.5 8.7 108 353-474 195-317 (609)
128 TIGR00274 TIGR00274 glucokinas 94.7 0.35 8.9E-06 27.3 8.5 121 436-559 30-173 (291)
129 LOAD_sis consensus 94.6 0.28 7.1E-06 28.0 7.8 86 463-550 2-88 (90)
130 PTZ00254 40S ribosomal protein 94.4 0.38 9.7E-06 27.0 8.2 123 288-428 69-194 (242)
131 cd02769 MopB_DMSOR-BSOR-TMAOR 94.2 0.45 1.1E-05 26.5 8.7 22 451-472 296-317 (609)
132 TIGR01012 Sa_S2_E_A ribosomal 94.0 0.087 2.2E-06 31.5 4.3 123 289-429 61-186 (197)
133 PRK05441 murQ N-acetylmuramic 93.9 0.51 1.3E-05 26.1 10.9 156 435-593 30-214 (273)
134 cd05637 SIS_PGI_PMI_2 The memb 93.8 0.53 1.4E-05 26.0 12.8 124 453-595 3-132 (132)
135 cd02766 MopB_3 The MopB_3 CD i 93.4 0.61 1.6E-05 25.6 7.7 109 353-475 175-292 (501)
136 COG0279 GmhA Phosphoheptose is 93.2 0.68 1.7E-05 25.3 13.6 121 446-568 24-164 (176)
137 KOG2446 consensus 90.9 0.63 1.6E-05 25.5 5.3 76 287-362 147-228 (546)
138 cd02759 MopB_Acetylene-hydrata 90.7 1.3 3.2E-05 23.4 7.6 108 354-475 180-296 (477)
139 cd02770 MopB_DmsA-EC This CD ( 89.9 1.5 3.7E-05 22.9 7.3 17 377-393 453-469 (617)
140 TIGR01591 Fdh-alpha formate de 89.8 0.34 8.7E-06 27.3 3.1 117 347-472 173-302 (694)
141 cd02762 MopB_1 The MopB_1 CD i 89.1 1.7 4.2E-05 22.6 8.3 111 351-475 178-297 (539)
142 cd02767 MopB_ydeP The MopB_yde 88.2 1.9 4.9E-05 22.1 11.7 125 339-474 165-319 (574)
143 cd02750 MopB_Nitrate-R-NarG-li 87.8 2 5.1E-05 22.0 7.5 106 355-474 190-298 (461)
144 PRK00421 murC UDP-N-acetylmura 86.7 2 5.1E-05 22.0 5.4 40 90-132 67-106 (459)
145 cd02753 MopB_Formate-Dh-H Form 84.7 2.9 7.3E-05 20.9 8.5 40 354-394 175-214 (512)
146 TIGR03479 DMSO_red_II_alp DMSO 84.2 3 7.6E-05 20.8 6.0 30 365-394 574-603 (912)
147 PRK08350 hypothetical protein; 84.1 1.3 3.2E-05 23.4 3.4 56 337-392 254-309 (341)
148 pfam00113 Enolase_C Enolase, C 83.5 1.4 3.5E-05 23.1 3.4 56 337-392 201-256 (296)
149 TIGR01701 Fdhalpha-like oxidor 83.0 3.3 8.5E-05 20.4 7.9 90 293-386 156-267 (824)
150 cd03313 enolase Enolase: Enola 82.0 1.8 4.6E-05 22.3 3.6 101 292-392 251-384 (408)
151 PTZ00081 enolase (2-phospho-D- 81.5 2.2 5.5E-05 21.7 3.8 55 338-392 347-401 (442)
152 cd01425 RPS2 Ribosomal protein 81.1 3.9 1E-04 20.0 6.4 46 338-389 128-173 (193)
153 PRK00077 eno phosphopyruvate h 80.5 2.3 5.9E-05 21.6 3.7 99 294-392 255-386 (427)
154 cd01409 SIRT4 SIRT4: Eukaryoti 80.1 3.1 8E-05 20.6 4.3 55 336-391 203-257 (260)
155 pfam10740 DUF2529 Protein of u 79.7 4.3 0.00011 19.7 5.9 55 335-389 79-135 (172)
156 COG0148 Eno Enolase [Carbohydr 79.2 2.6 6.7E-05 21.2 3.6 98 296-393 254-384 (423)
157 cd01412 SIRT5_Af1_CobB SIRT5_A 78.7 4 0.0001 19.9 4.4 55 336-391 163-217 (224)
158 COG1029 FwdB Formylmethanofura 77.6 4.9 0.00013 19.3 9.1 25 452-476 234-259 (429)
159 PRK09939 putative oxidoreducta 77.5 5 0.00013 19.2 13.5 15 25-39 43-57 (759)
160 COG3490 Uncharacterized protei 77.2 5.1 0.00013 19.2 5.4 64 168-231 127-196 (366)
161 TIGR01060 eno phosphopyruvate 76.8 3 7.7E-05 20.7 3.3 55 337-392 335-390 (430)
162 TIGR00176 mobB molybdopterin-g 76.7 3.1 8E-05 20.6 3.4 59 341-399 4-67 (165)
163 cd02754 MopB_Nitrate-R-NapA-li 75.6 5.4 0.00014 19.0 4.4 29 364-393 188-216 (565)
164 pfam00318 Ribosomal_S2 Ribosom 75.2 5.7 0.00015 18.8 6.6 45 339-389 139-183 (205)
165 pfam11004 DUF2843 Protein of u 75.1 3.5 9E-05 20.3 3.3 26 300-325 239-264 (281)
166 PRK05333 NAD-dependent deacety 74.2 4.5 0.00012 19.5 3.7 56 335-391 212-267 (285)
167 PRK02472 murD UDP-N-acetylmura 73.9 5.1 0.00013 19.2 3.9 33 91-126 73-105 (450)
168 PRK05299 rpsB 30S ribosomal pr 73.8 6.2 0.00016 18.6 8.9 46 339-390 159-204 (255)
169 cd01410 SIRT7 SIRT7: Eukaryoti 73.5 5.6 0.00014 18.9 4.0 52 335-387 153-204 (206)
170 COG0052 RpsB Ribosomal protein 73.0 6.4 0.00016 18.5 5.6 56 355-421 170-225 (252)
171 PRK00481 NAD-dependent deacety 72.0 5.8 0.00015 18.8 3.8 54 337-391 177-230 (239)
172 TIGR02477 PFKA_PPi diphosphate 71.9 6.8 0.00017 18.3 5.7 30 289-318 168-198 (566)
173 cd02755 MopB_Thiosulfate-R-lik 71.4 7 0.00018 18.2 9.4 106 354-473 176-291 (454)
174 cd04906 ACT_ThrD-I_1 First of 70.4 5.8 0.00015 18.8 3.5 49 326-374 28-76 (85)
175 KOG2670 consensus 70.3 7.3 0.00019 18.1 4.0 56 338-394 340-396 (433)
176 COG2213 MtlA Phosphotransferas 70.2 7.4 0.00019 18.0 7.3 16 182-197 84-99 (472)
177 TIGR02884 spore_pdaA delta-lac 69.6 2.3 5.8E-05 21.6 1.3 31 357-394 146-176 (225)
178 TIGR01011 rpsB_bact ribosomal 69.3 7.7 0.0002 17.9 4.0 52 525-585 168-219 (227)
179 TIGR00075 hypD hydrogenase exp 68.4 8 0.0002 17.8 4.6 23 377-399 137-161 (384)
180 TIGR02545 ATP_syn_fliI flagell 68.0 4.8 0.00012 19.4 2.7 109 295-417 164-296 (439)
181 pfam10079 DUF2317 Uncharacteri 67.7 6.3 0.00016 18.5 3.2 64 104-167 174-237 (541)
182 cd02765 MopB_4 The MopB_4 CD i 66.6 8.7 0.00022 17.5 9.5 42 348-394 402-443 (567)
183 TIGR02247 HAD-1A3-hyp Epoxide 66.2 5.9 0.00015 18.7 2.8 26 350-375 107-132 (228)
184 PRK00141 murD UDP-N-acetylmura 66.1 8.9 0.00023 17.5 5.0 34 91-127 77-110 (476)
185 cd01413 SIR2_Af2 SIR2_Af2: Arc 64.6 9.5 0.00024 17.3 4.4 51 336-387 170-220 (222)
186 cd05567 PTS_IIB_mannitol PTS_I 63.1 10 0.00026 17.1 5.3 68 297-378 10-79 (87)
187 pfam05198 IF3_N Translation in 62.8 10 0.00026 17.1 3.6 49 339-387 13-64 (76)
188 PRK13944 protein-L-isoaspartat 60.5 10 0.00026 17.1 3.2 15 532-547 160-174 (205)
189 TIGR01842 type_I_sec_PrtD type 60.1 2.9 7.5E-05 20.8 0.4 39 512-550 483-527 (556)
190 cd06103 ScCS-like Saccharomyce 60.0 11 0.00029 16.7 3.4 93 375-472 217-315 (426)
191 TIGR00707 argD acetylornithine 59.5 11 0.00029 16.7 3.3 15 468-482 337-351 (402)
192 PRK00312 pcm protein-L-isoaspa 59.4 10 0.00026 17.1 3.0 15 532-547 162-176 (213)
193 COG4015 Predicted dinucleotide 58.8 12 0.0003 16.6 4.5 63 309-371 75-141 (217)
194 pfam01135 PCMT Protein-L-isoas 57.5 12 0.00032 16.5 3.3 14 532-546 160-173 (205)
195 TIGR02076 pyrH_arch uridylate 56.7 13 0.00033 16.4 3.8 38 338-375 110-147 (232)
196 TIGR01694 MTAP methylthioadeno 56.1 9.9 0.00025 17.2 2.5 52 334-386 166-218 (263)
197 PRK13943 protein-L-isoaspartat 56.1 13 0.00034 16.3 3.4 23 288-310 74-96 (317)
198 cd01407 SIR2-fam SIR2 family o 55.6 13 0.00034 16.3 3.9 46 339-385 169-214 (218)
199 cd03116 MobB Molybdenum is an 55.3 14 0.00035 16.2 3.1 33 341-373 6-38 (159)
200 CHL00067 rps2 ribosomal protei 54.4 14 0.00036 16.1 7.1 45 339-389 159-203 (227)
201 TIGR01885 Orn_aminotrans ornit 54.0 14 0.00036 16.1 3.3 48 142-193 111-159 (426)
202 TIGR00514 accC acetyl-CoA carb 53.8 8.6 0.00022 17.6 1.9 52 343-403 6-61 (451)
203 COG5228 POP2 mRNA deadenylase 53.6 6.3 0.00016 18.5 1.2 142 146-320 32-182 (299)
204 PRK07574 formate dehydrogenase 52.9 11 0.00028 16.9 2.3 28 98-125 51-78 (385)
205 COG4229 Predicted enolase-phos 52.7 15 0.00038 15.9 3.9 14 489-502 88-101 (229)
206 cd02757 MopB_Arsenate-R This C 52.0 15 0.00039 15.9 7.4 39 356-395 185-223 (523)
207 pfam00289 CPSase_L_chain Carba 51.3 16 0.0004 15.8 3.1 48 342-391 4-53 (109)
208 TIGR00213 GmhB_yaeD D,D-heptos 51.3 14 0.00036 16.1 2.7 25 351-375 29-53 (178)
209 pfam09147 DUF1933 Domain of un 51.3 16 0.0004 15.8 7.7 77 98-187 54-134 (201)
210 TIGR00292 TIGR00292 thiazole b 51.2 12 0.00031 16.5 2.3 84 291-381 22-133 (283)
211 cd06106 ScCit3_like Saccharomy 51.2 16 0.0004 15.8 5.8 104 377-485 219-336 (428)
212 pfam02887 PK_C Pyruvate kinase 49.8 16 0.00041 15.7 2.8 32 339-375 18-50 (117)
213 cd06276 PBP1_FucR_like Ligand- 49.6 17 0.00042 15.6 6.8 92 287-387 114-211 (247)
214 KOG3459 consensus 49.0 11 0.00029 16.8 1.9 29 494-522 14-46 (114)
215 PRK12814 putative NADPH-depend 48.0 12 0.00031 16.5 1.9 22 347-370 331-352 (652)
216 TIGR00232 tktlase_bact transke 47.6 18 0.00045 15.4 4.6 114 476-608 482-621 (675)
217 KOG0830 consensus 46.7 15 0.00038 15.9 2.2 60 355-425 103-162 (254)
218 PRK13886 conjugal transfer pro 46.5 8.7 0.00022 17.5 1.0 35 297-331 13-50 (241)
219 PRK00960 seryl-tRNA synthetase 46.5 5.7 0.00015 18.8 0.0 12 340-351 334-345 (516)
220 COG0005 Pnp Purine nucleoside 45.1 10 0.00026 17.0 1.2 47 341-387 173-219 (262)
221 pfam00585 Thr_dehydrat_C C-ter 44.9 19 0.0005 15.1 3.1 24 103-126 63-86 (91)
222 KOG1184 consensus 44.8 19 0.0005 15.1 6.0 10 177-186 162-171 (561)
223 cd03238 ABC_UvrA The excision 44.5 19 0.00049 15.2 2.5 38 525-565 125-162 (176)
224 COG2518 Pcm Protein-L-isoaspar 44.1 16 0.00041 15.7 2.1 14 532-546 156-170 (209)
225 TIGR00631 uvrb excinuclease AB 44.0 20 0.00051 15.0 4.3 110 91-216 56-201 (667)
226 cd03271 ABC_UvrA_II The excisi 44.0 17 0.00044 15.5 2.2 36 526-564 209-244 (261)
227 pfam00901 Orbi_VP5 Orbivirus o 43.9 20 0.00051 15.0 4.9 59 535-594 446-506 (508)
228 PRK11582 flagella biosynthesis 43.6 14 0.00035 16.2 1.6 18 91-108 33-50 (179)
229 TIGR01501 MthylAspMutase methy 43.3 20 0.00052 15.0 3.6 45 92-136 83-133 (134)
230 TIGR01780 SSADH succinic semia 42.9 21 0.00053 14.9 3.0 247 248-546 32-333 (454)
231 TIGR00977 LeuA_rel 2-isopropyl 42.8 13 0.00034 16.3 1.4 77 296-381 285-364 (543)
232 cd02760 MopB_Phenylacetyl-CoA- 42.5 21 0.00054 14.9 9.5 37 348-389 529-565 (760)
233 PRK09569 type I citrate syntha 41.9 21 0.00055 14.8 5.4 89 380-472 222-316 (437)
234 TIGR01064 pyruv_kin pyruvate k 41.7 22 0.00055 14.8 2.5 81 139-220 60-153 (513)
235 TIGR00313 cobQ cobyric acid sy 41.6 18 0.00046 15.3 2.0 23 12-34 9-33 (502)
236 TIGR01271 CFTR_protein cystic 41.6 13 0.00033 16.4 1.2 92 205-306 533-630 (1534)
237 pfam03205 MobB Molybdopterin g 41.0 22 0.00056 14.7 3.2 34 339-372 3-36 (122)
238 PRK10751 molybdopterin-guanine 41.0 22 0.00056 14.7 3.1 34 341-374 7-40 (170)
239 TIGR01428 HAD_type_II haloacid 40.9 11 0.00029 16.7 0.9 23 528-550 104-126 (207)
240 PRK05339 hypothetical protein; 40.9 22 0.00057 14.7 3.2 38 337-378 149-186 (273)
241 PRK05298 excinuclease ABC subu 40.6 22 0.00057 14.7 4.0 68 91-173 60-142 (657)
242 PRK06769 hypothetical protein; 40.4 14 0.00036 16.1 1.3 25 351-375 31-55 (175)
243 PRK13641 cbiO cobalt transport 40.3 12 0.00032 16.5 1.0 22 526-547 182-203 (286)
244 PRK10982 galactose/methyl gala 40.1 23 0.00058 14.6 2.9 28 186-213 187-214 (491)
245 pfam10609 ParA ParA/MinD ATPas 39.4 23 0.0006 14.6 3.3 46 338-383 27-72 (81)
246 PRK12483 threonine dehydratase 39.3 23 0.0006 14.6 3.5 49 326-374 372-420 (521)
247 PRK10535 macrolide transporter 38.9 23 0.00058 14.7 2.2 30 187-217 198-227 (648)
248 cd02758 MopB_Tetrathionate-Ra 38.6 24 0.00061 14.5 8.1 45 344-390 502-546 (735)
249 PRK02006 murD UDP-N-acetylmura 38.2 24 0.00062 14.4 8.4 40 91-132 70-112 (501)
250 cd05563 PTS_IIB_ascorbate PTS_ 37.8 25 0.00063 14.4 5.5 66 297-375 9-74 (86)
251 PRK04176 ribulose-1,5-biphosph 37.6 25 0.00063 14.4 3.2 30 291-324 26-55 (257)
252 PRK13649 cbiO cobalt transport 37.5 19 0.00049 15.1 1.6 19 528-546 184-202 (280)
253 TIGR01819 F420_cofD LPPG:Fo 2- 37.3 14 0.00037 16.0 0.9 60 336-396 234-298 (359)
254 PRK11587 putative phosphatase; 37.1 23 0.00059 14.6 2.0 35 353-387 164-198 (218)
255 pfam01924 HypD Hydrogenase for 36.8 8.3 0.00021 17.7 -0.4 136 356-517 95-238 (355)
256 pfam01946 Thi4 Thi4 family. Th 36.7 26 0.00066 14.3 3.2 31 291-325 18-48 (229)
257 TIGR01737 FGAM_synth_I phospho 36.5 26 0.00066 14.3 5.0 64 309-374 18-103 (264)
258 cd07983 LPLAT_DUF374-like Lyso 36.3 20 0.00051 15.0 1.5 92 71-166 7-107 (189)
259 TIGR00113 queA S-adenosylmethi 36.0 25 0.00065 14.3 2.0 39 341-384 247-288 (364)
260 pfam00265 TK Thymidine kinase. 35.9 26 0.00067 14.2 3.6 53 339-394 4-56 (175)
261 PRK09224 threonine dehydratase 35.8 27 0.00068 14.2 3.5 49 326-374 355-403 (504)
262 PRK13643 cbiO cobalt transport 35.7 21 0.00055 14.8 1.6 20 582-602 250-271 (288)
263 cd03225 ABC_cobalt_CbiO_domain 35.5 25 0.00063 14.4 1.9 25 524-548 169-193 (211)
264 cd04907 ACT_ThrD-I_2 Second of 35.4 27 0.00068 14.1 3.1 25 103-127 53-77 (81)
265 PRK07208 hypothetical protein; 35.3 27 0.00069 14.1 3.6 10 463-472 420-429 (474)
266 COG1232 HemY Protoporphyrinoge 34.4 28 0.00071 14.0 3.4 26 21-47 16-46 (444)
267 PRK08931 5'-methylthioadenosin 34.2 15 0.00038 15.9 0.6 42 345-386 160-201 (289)
268 PRK13549 xylose transporter AT 34.1 28 0.00072 14.0 3.1 28 186-213 196-223 (513)
269 cd03409 Chelatase_Class_II Cla 34.0 28 0.00072 14.0 4.0 59 292-371 1-65 (101)
270 PRK06242 flavodoxin; Provision 34.0 28 0.00072 14.0 3.8 34 338-373 2-36 (150)
271 TIGR03467 HpnE squalene-associ 33.9 28 0.00072 14.0 3.4 10 21-30 14-23 (430)
272 PRK13647 cbiO cobalt transport 33.9 28 0.00072 14.0 2.5 13 339-351 34-46 (273)
273 CHL00199 infC translation init 33.7 29 0.00073 14.0 3.6 48 340-387 26-76 (182)
274 PRK08942 D,D-heptose 1,7-bisph 33.6 29 0.00073 14.0 2.6 25 351-375 32-56 (181)
275 PRK05632 phosphate acetyltrans 33.4 29 0.00074 13.9 7.6 86 309-397 359-448 (702)
276 PRK13642 cbiO cobalt transport 33.4 21 0.00052 15.0 1.2 23 526-548 177-200 (277)
277 cd02763 MopB_2 The MopB_2 CD i 33.3 29 0.00074 13.9 7.1 53 338-390 423-483 (679)
278 cd03234 ABCG_White The White s 33.2 29 0.00074 13.9 2.2 39 525-564 179-217 (226)
279 cd06113 citrate_synt_like_1_2 32.9 29 0.00075 13.9 4.0 61 379-441 195-261 (406)
280 TIGR02982 heterocyst_DevA ABC 32.9 29 0.00075 13.9 3.1 37 334-370 27-67 (220)
281 COG1648 CysG Siroheme synthase 32.7 30 0.00076 13.8 6.0 66 291-358 73-140 (210)
282 TIGR01405 polC_Gram_pos DNA po 32.6 30 0.00076 13.8 3.4 127 244-390 488-620 (1264)
283 PRK13651 cobalt transporter AT 32.5 22 0.00056 14.7 1.2 18 581-599 266-283 (304)
284 COG0731 Fe-S oxidoreductases [ 32.5 30 0.00076 13.8 4.2 37 339-375 80-120 (296)
285 TIGR01553 formate-DH-alph form 32.4 30 0.00076 13.8 6.0 108 286-395 163-291 (1043)
286 COG1435 Tdk Thymidine kinase [ 32.3 30 0.00077 13.8 3.3 59 343-404 11-72 (201)
287 PRK09536 btuD corrinoid ABC tr 32.0 29 0.00074 13.9 1.8 29 187-215 192-220 (409)
288 cd01480 vWA_collagen_alpha_1-V 31.8 31 0.00078 13.8 6.5 61 468-546 83-147 (186)
289 cd03292 ABC_FtsE_transporter F 31.8 30 0.00077 13.8 1.9 25 525-549 172-196 (214)
290 cd03270 ABC_UvrA_I The excisio 31.7 31 0.00078 13.7 2.2 38 525-565 175-212 (226)
291 PRK13636 cbiO cobalt transport 31.4 31 0.00079 13.7 3.2 18 581-598 247-264 (285)
292 KOG2495 consensus 31.4 31 0.00079 13.7 2.8 67 247-318 180-248 (491)
293 TIGR03269 met_CoM_red_A2 methy 30.9 32 0.0008 13.7 2.2 30 186-215 222-251 (520)
294 cd02764 MopB_PHLH The MopB_PHL 30.9 32 0.00081 13.7 5.9 94 364-472 233-327 (524)
295 pfam08493 AflR Aflatoxin regul 30.8 32 0.00081 13.6 3.9 33 567-599 215-247 (275)
296 cd03219 ABC_Mj1267_LivG_branch 30.7 23 0.00058 14.7 1.1 24 525-548 179-202 (236)
297 cd01674 Homoaconitase_Swivel H 30.6 32 0.00082 13.6 2.0 41 297-345 56-100 (129)
298 PRK08202 purine nucleoside pho 30.5 22 0.00057 14.7 1.0 26 352-377 92-117 (272)
299 cd01411 SIR2H SIR2H: Uncharact 30.5 32 0.00082 13.6 4.1 49 337-387 171-219 (225)
300 pfam08645 PNK3P Polynucleotide 30.4 32 0.00082 13.6 3.0 25 351-375 32-56 (158)
301 COG2179 Predicted hydrolase of 30.2 32 0.00083 13.6 3.2 46 337-383 36-81 (175)
302 cd02752 MopB_Formate-Dh-Na-lik 30.2 33 0.00083 13.6 7.7 12 293-304 275-286 (649)
303 PRK10261 glutathione transport 30.1 33 0.00083 13.6 1.9 30 185-214 221-250 (623)
304 KOG2535 consensus 30.0 33 0.00083 13.6 1.8 53 347-399 201-257 (554)
305 TIGR00080 pimt protein-L-isoas 30.0 32 0.00081 13.6 1.7 33 312-346 29-61 (228)
306 PRK12311 rpsB 30S ribosomal pr 30.0 33 0.00083 13.6 7.5 47 338-390 160-206 (332)
307 COG0066 LeuD 3-isopropylmalate 30.0 23 0.0006 14.6 1.0 42 297-346 73-118 (191)
308 KOG1985 consensus 29.7 33 0.00084 13.5 2.8 27 130-156 396-422 (887)
309 TIGR03315 Se_ygfK putative sel 29.5 33 0.00085 13.5 2.0 66 291-367 538-604 (1012)
310 TIGR01771 L-LDH-NAD L-lactate 29.4 33 0.00085 13.5 3.9 148 155-325 10-164 (302)
311 cd01427 HAD_like Haloacid deha 29.2 28 0.00071 14.0 1.3 27 349-375 25-51 (139)
312 KOG2969 consensus 29.2 34 0.00086 13.5 3.7 25 346-370 44-69 (264)
313 PRK07116 flavodoxin; Provision 28.7 34 0.00087 13.4 3.7 32 338-371 2-33 (158)
314 PRK01710 murD UDP-N-acetylmura 28.5 35 0.00088 13.4 6.8 39 90-131 77-115 (458)
315 PRK05868 hypothetical protein; 28.5 35 0.00088 13.4 3.7 13 42-54 50-62 (372)
316 PRK13634 cbiO cobalt transport 28.3 29 0.00074 13.9 1.3 20 580-599 237-256 (276)
317 PRK11231 fecE iron-dicitrate t 28.1 35 0.00089 13.3 1.9 23 526-548 175-197 (255)
318 PRK13637 cbiO cobalt transport 28.1 28 0.00071 14.0 1.1 17 580-597 249-265 (287)
319 TIGR01394 TypA_BipA GTP-bindin 28.0 27 0.00069 14.1 1.1 93 122-221 185-292 (609)
320 pfam09194 Endonuc-BsobI Restri 27.9 35 0.0009 13.3 4.6 118 344-480 164-284 (316)
321 PHA01735 hypothetical protein 27.9 35 0.0009 13.3 1.7 36 346-384 26-63 (76)
322 PRK07432 5'-methylthioadenosin 27.9 22 0.00056 14.7 0.6 42 345-386 163-204 (290)
323 PRK00028 infC translation init 27.6 36 0.00091 13.3 3.6 48 340-387 19-69 (175)
324 PRK10908 cell division protein 27.6 36 0.00092 13.3 1.7 26 524-549 172-197 (222)
325 TIGR01070 mutS1 DNA mismatch r 27.3 36 0.00093 13.2 2.5 29 383-413 602-630 (863)
326 PRK11288 araG L-arabinose tran 27.2 36 0.00093 13.2 3.3 29 186-214 193-221 (501)
327 PRK12778 putative bifunctional 27.2 30 0.00078 13.8 1.2 68 289-367 438-506 (760)
328 PRK04663 murD UDP-N-acetylmura 27.2 36 0.00093 13.2 5.5 37 90-129 68-104 (438)
329 TIGR01007 eps_fam capsular exo 27.1 37 0.00093 13.2 6.3 27 462-488 94-123 (207)
330 PRK07823 5'-methylthioadenosin 27.0 24 0.0006 14.5 0.6 41 346-386 156-196 (264)
331 TIGR03169 Nterm_to_SelD pyridi 26.8 37 0.00094 13.2 2.7 13 289-301 144-156 (364)
332 COG1763 MobB Molybdopterin-gua 26.7 37 0.00095 13.2 4.3 55 341-395 7-63 (161)
333 TIGR02773 addB_Gpos ATP-depend 26.7 37 0.00095 13.2 5.9 211 285-510 602-850 (1192)
334 TIGR00337 PyrG CTP synthase; I 26.5 37 0.00095 13.1 1.7 21 351-371 389-409 (571)
335 PRK09984 phosphonate/organopho 26.5 31 0.00078 13.7 1.1 11 341-351 35-45 (262)
336 PRK00758 GMP synthase subunit 26.4 38 0.00096 13.1 5.8 74 292-371 1-74 (184)
337 KOG0898 consensus 26.3 25 0.00063 14.4 0.6 25 87-111 94-118 (152)
338 COG4618 ArpD ABC-type protease 26.3 38 0.00096 13.1 2.5 25 527-551 510-534 (580)
339 COG1806 Uncharacterized protei 26.1 38 0.00097 13.1 2.3 33 337-369 145-178 (273)
340 cd01577 IPMI_Swivel Aconatase- 26.0 38 0.00097 13.1 1.6 42 297-346 28-73 (91)
341 PRK05638 threonine synthase; V 26.0 38 0.00097 13.1 4.9 23 348-370 281-303 (443)
342 TIGR02865 spore_II_E stage II 25.9 38 0.00098 13.1 9.8 12 509-520 690-701 (794)
343 TIGR00368 TIGR00368 Mg chelata 25.8 22 0.00056 14.8 0.3 102 91-213 140-247 (505)
344 TIGR01918 various_sel_PB selen 25.7 39 0.00099 13.0 3.4 87 295-399 313-402 (433)
345 cd01746 GATase1_CTP_Synthase T 25.6 39 0.00099 13.0 2.2 52 335-386 53-106 (235)
346 pfam03618 DUF299 Domain of unk 25.5 39 0.00099 13.0 3.3 35 337-375 138-172 (255)
347 TIGR02860 spore_IV_B stage IV 25.4 32 0.00082 13.6 1.1 30 86-115 142-177 (423)
348 pfam05896 NQRA Na(+)-transloca 25.3 39 0.001 13.0 7.2 24 173-196 52-75 (257)
349 PRK10637 cysG siroheme synthas 25.3 39 0.001 13.0 11.4 77 289-371 214-300 (457)
350 PRK13640 cbiO cobalt transport 25.2 39 0.001 13.0 2.2 23 526-548 181-204 (283)
351 COG0290 InfC Translation initi 25.0 40 0.001 13.0 3.9 48 341-388 21-71 (176)
352 cd04885 ACT_ThrD-I Tandem C-te 25.0 40 0.001 13.0 3.1 41 326-367 26-66 (68)
353 pfam05176 ATP-synt_10 ATP10 pr 24.8 26 0.00067 14.2 0.5 14 503-516 220-233 (255)
354 cd03246 ABCC_Protease_Secretio 24.7 40 0.001 12.9 2.1 23 527-549 134-156 (173)
355 cd03213 ABCG_EPDR ABCG transpo 24.6 40 0.001 12.9 2.2 25 524-548 146-170 (194)
356 PRK01641 leuD isopropylmalate 24.4 31 0.0008 13.7 0.9 42 297-346 78-123 (201)
357 KOG3015 consensus 24.2 34 0.00086 13.4 1.0 18 389-406 208-225 (283)
358 TIGR02919 TIGR02919 conserved 24.1 41 0.0011 12.8 3.7 128 325-456 273-439 (448)
359 COG3845 ABC-type uncharacteriz 23.8 38 0.00096 13.1 1.2 26 187-212 194-219 (501)
360 TIGR01487 SPP-like SPP-like hy 23.8 42 0.0011 12.8 2.1 39 350-389 22-60 (223)
361 COG0634 Hpt Hypoxanthine-guani 23.7 42 0.0011 12.8 1.5 14 358-371 114-127 (178)
362 PRK13639 cbiO cobalt transport 23.6 42 0.0011 12.8 3.9 23 580-602 241-263 (275)
363 TIGR01116 ATPase-IIA1_Ca calci 23.5 42 0.0011 12.8 2.8 116 249-375 359-493 (800)
364 COG0556 UvrB Helicase subunit 23.4 43 0.0011 12.7 4.6 68 91-173 59-141 (663)
365 PRK11264 putative amino-acid A 23.3 43 0.0011 12.7 3.9 13 339-351 30-42 (248)
366 PRK08666 5'-methylthioadenosin 23.2 31 0.00079 13.7 0.6 41 346-386 159-199 (261)
367 TIGR01138 cysM cysteine syntha 23.1 43 0.0011 12.7 5.1 89 299-394 68-161 (300)
368 COG0444 DppD ABC-type dipeptid 23.1 43 0.0011 12.7 2.1 39 353-392 192-231 (316)
369 cd06105 ScCit1-2_like Saccharo 23.0 43 0.0011 12.7 5.4 88 380-472 220-313 (427)
370 PRK07504 O-succinylhomoserine 22.9 43 0.0011 12.7 10.3 145 316-470 128-292 (397)
371 pfam08436 DXP_redisom_C 1-deox 22.8 22 0.00057 14.7 -0.2 18 287-304 20-37 (84)
372 TIGR01697 PNPH-PUNA-XAPA inosi 22.7 44 0.0011 12.7 2.1 75 301-389 38-122 (266)
373 PRK06186 hypothetical protein; 22.7 44 0.0011 12.7 2.1 25 350-374 68-92 (229)
374 KOG2947 consensus 22.5 44 0.0011 12.6 2.9 15 293-307 254-268 (308)
375 COG1134 TagH ABC-type polysacc 22.5 44 0.0011 12.6 1.8 27 523-549 181-207 (249)
376 PRK06062 hypothetical protein; 22.3 31 0.0008 13.7 0.5 29 342-371 250-279 (434)
377 COG1635 THI4 Ribulose 1,5-bisp 22.2 45 0.0011 12.6 3.0 28 291-322 31-58 (262)
378 PRK01390 murD UDP-N-acetylmura 22.0 45 0.0012 12.6 7.8 36 91-129 66-105 (457)
379 pfam08981 consensus 22.0 45 0.0012 12.6 3.2 28 344-373 32-59 (181)
380 PRK10619 histidine/lysine/argi 21.9 45 0.0012 12.6 3.1 24 525-548 188-211 (257)
381 cd01132 F1_ATPase_alpha F1 ATP 21.9 39 0.00098 13.1 0.9 19 355-373 114-134 (274)
382 TIGR01258 pgm_1 phosphoglycera 21.9 35 0.00088 13.4 0.7 95 213-316 103-198 (248)
383 TIGR02812 fadR_gamma fatty aci 21.8 35 0.00089 13.4 0.7 50 304-367 8-68 (275)
384 PRK10762 D-ribose transporter 21.8 46 0.0012 12.5 2.8 29 185-213 193-221 (501)
385 PRK11614 livF leucine/isoleuci 21.6 46 0.0012 12.5 1.9 24 525-548 173-196 (237)
386 TIGR00110 ilvD dihydroxy-acid 21.4 29 0.00074 13.9 0.2 245 151-403 96-382 (601)
387 COG0243 BisC Anaerobic dehydro 21.3 47 0.0012 12.5 8.2 28 365-393 462-489 (765)
388 pfam06718 DUF1203 Protein of u 21.2 47 0.0012 12.5 3.2 45 26-78 64-108 (116)
389 TIGR01163 rpe ribulose-phospha 21.1 47 0.0012 12.4 2.3 83 306-392 46-139 (216)
390 cd03215 ABC_Carb_Monos_II This 21.1 47 0.0012 12.4 2.1 24 525-548 140-163 (182)
391 KOG0685 consensus 21.0 47 0.0012 12.4 3.4 10 512-521 454-463 (498)
392 TIGR00105 L31 ribosomal protei 21.0 47 0.0012 12.4 1.4 19 84-102 42-61 (77)
393 TIGR00389 glyS_dimeric glycyl- 20.9 35 0.00089 13.4 0.5 30 301-331 302-336 (606)
394 PRK06176 cystathionine gamma-s 20.8 48 0.0012 12.4 9.1 173 296-479 92-287 (379)
395 TIGR02729 Obg_CgtA GTP-binding 20.8 45 0.0012 12.6 1.1 13 140-152 261-273 (296)
396 PRK12416 protoporphyrinogen ox 20.7 48 0.0012 12.4 3.2 10 40-49 44-53 (466)
397 PRK10372 L-ascorbate-specific 20.7 43 0.0011 12.7 1.0 27 453-479 44-70 (154)
398 COG5405 HslV ATP-dependent pro 20.7 48 0.0012 12.4 7.8 111 103-221 34-172 (178)
399 PRK04296 thymidine kinase; Pro 20.6 48 0.0012 12.4 3.8 53 339-394 5-57 (197)
400 KOG0294 consensus 20.5 48 0.0012 12.4 3.0 35 196-230 167-202 (362)
401 PRK10418 nikD nickel transport 20.5 48 0.0012 12.4 3.4 23 526-548 177-200 (254)
402 TIGR00430 Q_tRNA_tgt queuine t 20.3 49 0.0012 12.3 4.4 145 256-459 253-409 (415)
403 PRK13646 cbiO cobalt transport 20.1 49 0.0013 12.3 1.7 20 528-547 184-204 (286)
404 PRK09136 5'-methylthioadenosin 20.1 40 0.001 13.0 0.7 40 347-386 160-199 (245)
405 COG0320 LipA Lipoate synthase 20.0 14 0.00035 16.2 -1.7 38 335-375 214-252 (306)
406 COG5015 Uncharacterized conser 20.0 50 0.0013 12.3 2.0 75 175-261 30-104 (132)
No 1
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1726.13 Aligned_cols=607 Identities=48% Similarity=0.766 Sum_probs=587.4
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHHHHHCCCC-CCCCEEEEEECCCCCC
Q ss_conf 669999725-01279999999976315874348999958-92999945865899887521034-7865446510454388
Q gi|254780943|r 2 CGIVGIVGR-ESVGERLFKALKRLEYRGYDSSGMATICD-GKIQCVRAQGKLSELEKELNKKP-LKGNIGIAHTRWATHG 78 (608)
Q Consensus 2 CGI~G~~~~-~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~-~~i~~~K~~g~i~~l~~~~~~~~-~~~~~gIgHtR~AT~G 78 (608)
|||+||++. +++.++|++||+|||||||||||||+.++ |+|.+.|..|+|.+|.+.+...+ +.|.+|||||||||||
T Consensus 1 CGIVGyiG~~~~~~~~lleGL~rLEYRGYDSAGiAv~~~~g~l~v~k~~Gk~~~L~~~~~~~~~l~g~~GIGHTRWATHG 80 (628)
T TIGR01135 1 CGIVGYIGQDRDAVPILLEGLKRLEYRGYDSAGIAVVDEEGKLFVRKAKGKVAELANKLKEKEVLSGGVGIGHTRWATHG 80 (628)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 92599981898601556544665235576520158852897189995478658999986307762123102310002687
Q ss_pred CCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf 997002675023--8899997681506899989999789889724761567888763432-0010267799999988751
Q gi|254780943|r 79 LPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIK-NGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 79 ~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~-~~~~~~~ai~~~~~~l~G~ 155 (608)
+||+.|||||+| ++||||||||||||++||++|+.+||.|.||||||||||||+++++ .+.|+++|+++++++|+|+
T Consensus 81 ~Pt~~NAHPH~d~~g~iaVVHNGIIENy~~Lr~eL~~~G~~F~S~TDTEVIaHLie~~~~~~~~~L~~A~~~~~~~L~G~ 160 (628)
T TIGR01135 81 KPTDENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFSSDTDTEVIAHLIEEELRQEGGDLLEAVQKALKQLRGA 160 (628)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCEECCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88877888722699527999778270548899899848928971367404888988984178841899999998762662
Q ss_pred HHHHHHCCCCCCEEEEEECCCCEEEEC-CCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCE-ECC--CCCCCCCC
Q ss_conf 222010046872389997499607760-89613661376201111103798276518897305741-003--33222100
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARKGPPLIIGH-GEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLT-IYD--SQGYEIER 231 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~gsPL~iG~-~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~-i~~--~~~~~~~~ 231 (608)
||+++++.++||+|++||++|||++|+ |++++|+|||.+||+.||+++++|+|||++.++++++. |+| .+|.++.|
T Consensus 161 YA~a~~~~~~P~~l~~AR~~SPLi~Gl~G~gE~F~ASD~~All~~T~~~~~L~dGd~a~~~~d~~~~i~n~~~~g~~~~r 240 (628)
T TIGR01135 161 YALAVLHADHPETLVAARSGSPLIVGLVGDGENFVASDVTALLPYTRRVIYLEDGDIAILTKDGVREIYNIFLEGAPVSR 240 (628)
T ss_pred EEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEECCHHHHHHHCCEEEEECCCCEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 57999831889659999637876888835712698338278873278899950688899804865899721567873022
Q ss_pred HH--HHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC-CC---HHCCCCCCCCEEEEECCCCCCHH
Q ss_conf 01--10001210000140789999997417899999871574766452111-10---00023565510352036543079
Q gi|254780943|r 232 PI--QIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIP-NI---FNYDFANISGLLVSSCGTSYLAG 305 (608)
Q Consensus 232 ~~--~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~-~~---~~~~~~~~~~I~~vGcGTSy~Aa 305 (608)
++ ..++|+...++||+|+|||+|||||||++|++||.++++........ .. ....++++++|.|||||||||||
T Consensus 241 ~~R~~~~~~~~~~aeKggy~HfMlKEIyEQP~a~~~tL~~~~~~~~~~~~~~l~~~~~~~~l~~~~~I~IvACGTSYHAG 320 (628)
T TIGR01135 241 EVRVEVIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLEGRLEEEGGVDLEELGADLAEELLKNIDRIQIVACGTSYHAG 320 (628)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCEEEEEECCHHHHHH
T ss_conf 34415861656763478865634242267689999999876215761451126752112343155568999540168899
Q ss_pred HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCC
Q ss_conf 99999998625667314304201001233445550577526788189999999986302--4424651178763100024
Q gi|254780943|r 306 LVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG--LTIGSLVNVLESTIARESD 383 (608)
Q Consensus 306 l~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g--~~tiaItN~~~S~la~~aD 383 (608)
|++|||||++++|||+|++||||+|+.+.+++++|+|+|||||||+||++|||.+|++| ++++||||+++|+|+|+||
T Consensus 321 Lv~kY~iE~lA~iPv~Ve~ASEfRYr~~~~~~~~L~I~ISQSGETADTL~ALr~aK~~G~~~~~L~IcNv~gS~l~Re~D 400 (628)
T TIGR01135 321 LVAKYLIERLAGIPVEVEVASEFRYRKPVVDKKTLVIAISQSGETADTLEALRLAKELGLYAKTLGICNVPGSTLTREAD 400 (628)
T ss_pred HHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
T ss_conf 99999999861897289984120013677588765999974861088999999998479851589998368753357877
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1013674200110007888999999999999977621200-157763227999875999999999767744677987420
Q gi|254780943|r 384 FIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYI-NEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAK 462 (608)
Q Consensus 384 ~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i-~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~ 462 (608)
.+|+++||||||||||||||+|+++|++|++++|+.+|.+ +.++..++.+.|+.+|+.++++|...++.++++|++|.+
T Consensus 401 ~~L~t~AGpEIGVAsTKaFt~Ql~~L~~L~~~~a~~~g~~~~~~~~~~~~~~L~~lP~~~~~~l~~~~~~i~~~A~~~~~ 480 (628)
T TIGR01135 401 HTLYTRAGPEIGVASTKAFTAQLTVLYLLALALAKARGTLSDAEEEAELVDALRRLPELVEQVLKAQDEKIAELAEKYAD 480 (628)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 87765069711145458899999999999999998537555878999999998750699999870456689999999731
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCE
Q ss_conf 3614552136644999999999999742211442324314463788079871899944801-468899999999827980
Q gi|254780943|r 463 CQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDR-FFQKTLSNIQEIVTRGGR 541 (608)
Q Consensus 463 ~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~-~~~k~~s~~~Ei~arg~~ 541 (608)
.++|||||||.+||+||||||||||+||||||||||||||||||||||+|+|||+++|++. +++|++||++|++||||+
T Consensus 481 ~~~flFlGRg~~YPiALEGALKLKEISYIHAEgYpAGElKHGPiALid~~~PVva~ap~~~Gl~~K~~SNv~Ev~ARga~ 560 (628)
T TIGR01135 481 KRNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSGLLEKTKSNVEEVKARGAR 560 (628)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 68738983557770232354466565456524544553456850033188708998278898507778889988726963
Q ss_pred EEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 89995653210001346627986887815665899-99999999999998387798897986475379
Q gi|254780943|r 542 VIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVF-SLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 542 vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~-~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
||+|++.++.......+++.|.+|++++.++||++ +||+||||||+|+.||+|||||||||||||||
T Consensus 561 vi~~~~~~~~~~~~~~~d~~i~~P~~~~~~~P~~~l~iplQLlAYhiA~~kG~DvDkPRNLAKSVTVE 628 (628)
T TIGR01135 561 VIVLASEDDAELIAAIADDIIKLPEVEELLAPIVYLTIPLQLLAYHIALAKGTDVDKPRNLAKSVTVE 628 (628)
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 89982577532431105458884688863041667679999999999997086436875577110049
No 2
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=0 Score=1508.53 Aligned_cols=602 Identities=50% Similarity=0.804 Sum_probs=581.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
|||||||++++++.+.+++||++||||||||||||+.+++++.++|+.|+|++|++.+..+++.|++|||||||||||.|
T Consensus 1 MCGI~g~~~~~~~~~~ll~gL~~LeyRGyDSaGia~~~~~~i~~~K~~G~v~~l~~~~~~~~~~g~~gIgHtRWAThG~~ 80 (604)
T PRK00331 1 MCGIVGYVGQRNAAPILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAALEEEPLPGTTGIGHTRWATHGKP 80 (604)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf 96499998580189999999998644682406799980998999978877899986650257899877827867579999
Q ss_pred CCCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 700267502--388999976815068999899997898897247615678887634320010267799999988751222
Q gi|254780943|r 81 NKENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSI 158 (608)
Q Consensus 81 ~~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~ 158 (608)
++.|||||+ ++++++||||+|+||.+||++|..+||.|.|+||||||+|||+++++++.++.+|+++++++|+|+||+
T Consensus 81 s~~NAHPh~~~~~~i~vVHNGiIeN~~~lk~~L~~~g~~f~S~TDtEvi~~li~~~~~~~~~~~~A~~~~~~~l~GsyAi 160 (604)
T PRK00331 81 TERNAHPHTDCSGRIAVVHNGIIENYAELKEELEAKGYVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYAL 160 (604)
T ss_pred CCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 87788988189999999989711479999999997879664888478999999999871999999999999865480048
Q ss_pred HHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCC
Q ss_conf 01004687238999749960776089613661376201111103798276518897305741003332221000110001
Q gi|254780943|r 159 AVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQI 238 (608)
Q Consensus 159 ~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~ 238 (608)
++++.++||+||++|+||||+||++++++|+|||.+||.+||+++++|+|||+++|+++++++|+.++.+++++++.++|
T Consensus 161 ~ii~~~~P~~i~~ar~gSPLvIG~g~~~~fiaSD~~al~~~t~~~i~LeDgdia~I~~~~~~i~~~~~~~~~~~~~~i~~ 240 (604)
T PRK00331 161 AVIDKDEPDTLVAARNGSPLVIGLGEGENFLASDALALLPVTRRFIYLEDGEIAVLTRDGVEIFDFDGNPVEREVYTVDW 240 (604)
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCEEEEECCCHHHHHHHHEEEECCCCCEEEEEEEEEEEEECCCCCCCCEEEEECC
T ss_conf 99963787459999559982898069637993282766775212797689988999833489996489771223799226
Q ss_pred CCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 21000014078999999741789999987157476645211110000235655103520365430799999999862566
Q gi|254780943|r 239 APFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARL 318 (608)
Q Consensus 239 ~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i 318 (608)
++++++||+|+|||+|||||||+++++++++|++...... ....++++++|+|+|||||||||++|+||||+++++
T Consensus 241 ~~~~~~kg~Y~HfMlKEI~EQP~~i~~tl~~ri~~~~~~~----~~~~l~~i~~I~ivaCGTSyhA~lv~ky~~E~la~i 316 (604)
T PRK00331 241 DASAAEKGGYRHFMLKEIYEQPEVIRDTLEGRLDEDGEID----LDEDLKKIDRIYIVACGTSYHAGLVAKYWIESLAGI 316 (604)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 7444216872678999997548999999986508665222----599986377589997256899999999999996499
Q ss_pred CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 73143042010012334455505775267881899999999863024424651178763100024101367420011000
Q gi|254780943|r 319 KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAS 398 (608)
Q Consensus 319 ~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Vas 398 (608)
||.++.||||+|+++++++++++|+|||||||+||++|++.||++|++|++|||+++|+|+|++|++++++||||+||||
T Consensus 317 pv~v~~ASEFry~~~~~~~~~l~i~iSQSGET~Dtl~al~~ak~~ga~tiaIvNv~~Ssiar~sD~~i~~~aGpEi~VAS 396 (604)
T PRK00331 317 PVEVEIASEFRYRDPVLSPNTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTLARESDLVLYTHAGPEIGVAS 396 (604)
T ss_pred CCEEEECHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEECC
T ss_conf 97288861203457776664389997578883789999999987799489860689953231458178855723574312
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 78889999999999999776212001577632279998759999999997677446779874203614552136644999
Q gi|254780943|r 399 TKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLA 478 (608)
Q Consensus 399 TKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A 478 (608)
||+||+|+++|+||++++++.++.++.++...+.++|..+|+.++++|+. ++.++++|+++.+.++++|||||++||+|
T Consensus 397 TKaftsQl~~l~llal~la~~~~~~~~~~~~~~~~~L~~lp~~i~~~l~~-~~~i~~ia~~~~~~~~~~~lGrG~~~~~A 475 (604)
T PRK00331 397 TKAFTTQLAVLYLLALALAKARGTLSAEEEADLVHELRELPALIEQVLDL-EEQIEELAEDFADKRNALFLGRGIDYPVA 475 (604)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 30379999999999999999839999999999999999999999999853-69999999998445648997267862778
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99999999974221144232431446378807987189994480146889999999982798089995653210001346
Q gi|254780943|r 479 LEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPS 558 (608)
Q Consensus 479 ~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~ 558 (608)
+||||||||+||+|||||++|||||||+||||+++|||+++|+++.++|++++++|++||||++++|+++++....+ ..
T Consensus 476 ~EgALKlKEisYihAEgy~agElKHGPiALI~~~~pvI~i~~~~~~~~k~~sn~~EikaRga~vi~i~~~~~~~~~~-~~ 554 (604)
T PRK00331 476 LEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELFEKTKSNIQEVKARGARVIVIADEGDEAVED-DA 554 (604)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CC
T ss_conf 88888777666354313530230467412334998489996685158999999999997698499997588311345-66
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 62798688781566589999999999999998387798897986475379
Q gi|254780943|r 559 IETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 559 ~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
+.++.+|+++++++||+++||+||||||+|+.||+|||+|||||||||||
T Consensus 555 ~~~i~iP~~~~~l~pil~~IplQLlAY~~A~~~G~d~D~PRnLAKsVTVE 604 (604)
T PRK00331 555 DHVIEIPEVHELLAPLLYVVPLQLLAYHVALARGTDVDQPRNLAKSVTVE 604 (604)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf 36998799860166699999999999999997699989999878766549
No 3
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=0 Score=1480.69 Aligned_cols=598 Identities=36% Similarity=0.578 Sum_probs=555.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCC-----HHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 96699997250127999999997631587434899995-892999945865-----899887521034786544651045
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGK-----LSELEKELNKKPLKGNIGIAHTRW 74 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~-----i~~l~~~~~~~~~~~~~gIgHtR~ 74 (608)
-|||+||+|++++.++|++||++||||||||||||+.+ ++.+.+.|..|+ +.+|.+.+...+..+++|||||||
T Consensus 78 ~CGIvGyvg~~~a~~iLl~GL~rLEYRGYDSAGIA~~~~~~~l~~~K~~~~~~~~~i~~L~~~~~~~~~~~~iGIgHTRW 157 (691)
T PTZ00295 78 CCGIIGYVGNRDASKILLDGIEILQNRGYDSCGMSTISSDNDLKTTKYASNTTSDAIERLKSNYAHLHKNHHIGIAHTRW 157 (691)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 31079999087748999998888611552604489980899689999615544269999986553258889875643777
Q ss_pred CCCCCCCCCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 438899700267502--388999976815068999899997898897247615678887634320010267799999988
Q gi|254780943|r 75 ATHGLPNKENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCL 152 (608)
Q Consensus 75 AT~G~~~~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l 152 (608)
||||.|+++|||||+ +++++||||||||||.+||++|..+||.|.|+||||||+|||+++++++.|+.+|+++++++|
T Consensus 158 ATHG~ps~~NAHPH~d~~~~iavVHNGIIENy~eLK~~L~~~G~~F~SeTDTEVIahLi~~~~~~~~~~~~Av~~~~~~L 237 (691)
T PTZ00295 158 ATHGGKTDENAHPHLDYKERISIVHNGIIENYRELKTELLKKGIPFRSETDTEVIANLIGYFLDQGESFQDAVLSAIKQL 237 (691)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999998889988489999999816304479999999997889564878759999999999870999999999999971
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCH
Q ss_conf 75122201004687238999749960776089613661376201111103798276518897305741003332221000
Q gi|254780943|r 153 TGSYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERP 232 (608)
Q Consensus 153 ~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~ 232 (608)
+|+||+++++.++||.||++|+||||+||++++++|+|||..||.+||++|++|+|||++.|+++++..++. .++
T Consensus 238 ~GsyAiavi~~~~P~~ii~aR~gSPLvIG~g~~e~fiASD~~Al~~~T~~vi~LeDgdia~I~~d~i~~~~~-----~~~ 312 (691)
T PTZ00295 238 QGTWGIAVIHKDHPDEMILARNGSPLLIGFKDDEIFIASEHSALFMFTNEYISLKNGEIASLSKDGINDLKD-----LSR 312 (691)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCEEEECCCHHHHHHHCCEEEEECCCEEEEEECCCEEEEEC-----CCC
T ss_conf 683059999717997599996699747980598379720779988746869995698099995685000113-----671
Q ss_pred HHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHH--CCCCCCCCCCC-CCCH--HCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 110001210000140789999997417899999871--57476645211-1100--002356551035203654307999
Q gi|254780943|r 233 IQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLS--HYINLSDHTII-PNIF--NYDFANISGLLVSSCGTSYLAGLV 307 (608)
Q Consensus 233 ~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~--~~~~~~~~~~~-~~~~--~~~~~~~~~I~~vGcGTSy~Aal~ 307 (608)
+..++|+...++|++|+|||+|||||||++++++|+ +|++..+..+. .++. ...++++++|+|+|||||||||++
T Consensus 313 v~~~~~~~~~~~k~~Y~HfMlKEI~EQP~ai~~tL~~~gri~~~~~~i~l~~l~~~~~~l~~i~rI~iVACGTSyhAglv 392 (691)
T PTZ00295 313 VESIPHETIQKSPHPYPHWTIKEIHEQPMTLSRSLNNGGRISDYNSRVKLGGLDPYKDELLKIENLILTGCGTSFYAALF 392 (691)
T ss_pred EEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCEEEEEECCHHHHHHHH
T ss_conf 37555667750667764417999875499999999741664677770531675144899861885999985488999999
Q ss_pred HHHHHHHHCCC-CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999862566-73143042010012334455505775267881899999999863024424651178763100024101
Q gi|254780943|r 308 GKFWFERLARL-KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 308 ~~~~~e~~~~i-~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
|+||||+++++ +|.++.|||| |+.+..++++++|+|||||||+||++|++.||++|+++++|||+++|+|+|++|.++
T Consensus 393 aky~~E~la~i~~V~v~~asEf-~~~~~~~~~~lvI~ISQSGETADTLaALr~AK~~G~~tlaIvNv~gSsiaReaD~~i 471 (691)
T PTZ00295 393 AKYLMRYLSCFNTVQVMDAIEI-NVSVLPKEHAGVIFISQSGETRDVIKACKLAEDLGIPKLSVVNSVGSTIARMTGCGV 471 (691)
T ss_pred HHHHHHHHCCCCCEEEEEEHHH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHEECCEEE
T ss_conf 9999999539997689840120-145789877539997577885679999999997699389995478872530446326
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 36742001100078889999999999999776212001577632279998759999999997677446779874203614
Q gi|254780943|r 387 PIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTL 466 (608)
Q Consensus 387 ~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~ 466 (608)
+++||||+||||||+||+|+++|++||+++++.++.++.++..+++++|..+|+.++++|+ .+++++++|+++.+.+++
T Consensus 472 ~t~AGpEIgVASTKaFtsQl~~L~llal~la~~~~~l~~~~~~~~~~~L~~lP~~i~~~L~-~~~~i~~iA~~~~~~~~~ 550 (691)
T PTZ00295 472 YLNAGREVAVASTKAFSSQVSVLSLIANWFAQHRKGISSGKRRSLINSLHRLPLYLGVTLK-CEEQCKQIAEKIKNKNSI 550 (691)
T ss_pred EECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCE
T ss_conf 8247764678704899999999999999999860898789999999999860776999986-278999999998534558
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHH--CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 5521366449999999999997422114423243144637880--79871899944801468899999999827980899
Q gi|254780943|r 467 LYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALI--TEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 467 ~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali--~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
||||||.+||+|+||||||||+||||||||++|||||||+||| |+++|||+++|+|+.++|++||++|++||||+||+
T Consensus 551 ~fLGRG~~ypiAlEGALKLKEISYIHAEgy~AGElKHGPiALId~e~~~PVi~i~~~d~~~~k~~sni~EvkARga~vI~ 630 (691)
T PTZ00295 551 FVLGKGLSYPIALEGALKIKEITYIHCEGYSGGALKHGPFALIGGEDNTPVILLILNDSNKNLMMNTAEQVKARGAHIIC 630 (691)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99836887599999999999998885426633563678667621588970899943985088899999999976997999
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9565321000134662798688781566589999999999999998387798897986475379
Q gi|254780943|r 545 ITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 545 I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
|++++.. .....++++.+|. ++.++|++++||+||||||+|+.||+|||+|||||||||||
T Consensus 631 I~~~~~~--~~~~~~~~i~iP~-~~~l~pil~~IplQLlAY~~A~~rG~dvD~PRNLAKSVTVE 691 (691)
T PTZ00295 631 ITDDENL--CKHIADDIILIPS-NGILTALLAVIPLQLLAYYTAICKGINPDRPRCLAKTVTVD 691 (691)
T ss_pred EECCCCH--HHHCCCCEEECCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf 9567312--1204771898899-86500799999999999999997699999999877664039
No 4
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=1436.03 Aligned_cols=596 Identities=50% Similarity=0.798 Sum_probs=567.6
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 966999972-5012799999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r 1 MCGIVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL 79 (608)
Q Consensus 1 MCGI~G~~~-~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~ 79 (608)
|||||||++ ++++.++|++||++||||||||||||+.+++++.++|..|++++|.+.....++.|++|||||||||||.
T Consensus 1 MCGIvG~i~~~~~~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG~ 80 (597)
T COG0449 1 MCGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHGG 80 (597)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 98689997488538999999988877067775657998178189998257787887653225667745555654467898
Q ss_pred CCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97002675023889999768150689998999978988972476156788876343200102677999999887512220
Q gi|254780943|r 80 PNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIA 159 (608)
Q Consensus 80 ~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~ 159 (608)
|++.|||||.+++++|||||||+||.+||++|+.+||.|.|+||||||+||++++++++ +.+|+++++++|+|+||++
T Consensus 81 P~~~NAHPh~~~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~--~~~a~~~~l~~l~Gsyal~ 158 (597)
T COG0449 81 PTRANAHPHSDGEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTS--LLEAVKKVLKRLEGSYALL 158 (597)
T ss_pred CCCCCCCCCCCCCEEEEECCHHHCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCEEEEE
T ss_conf 88577898988979999573422789999999966988856761489999999998646--9999999998714305799
Q ss_pred HHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCC
Q ss_conf 10046872389997499607760896136613762011111037982765188973057410033322210001100012
Q gi|254780943|r 160 VIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIA 239 (608)
Q Consensus 160 il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~ 239 (608)
++++++||+||+||++|||++|.|++++|+|||..||++||+++++|+|||+++++++++. ++ +|. +.|+++.++|+
T Consensus 159 ~~~~~~p~~i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~-~~-~g~-v~r~~~~~~~~ 235 (597)
T COG0449 159 CTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVS-IN-DGN-VLRDVPVIEWD 235 (597)
T ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHCEEEEECCCCEEEEECCCEE-EE-CCE-EEEEEEEECCC
T ss_conf 9826999739998689985999658861586172666654146899669978999779589-85-580-66534772167
Q ss_pred CCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 10000140789999997417899999871574766452111100002356551035203654307999999998625667
Q gi|254780943|r 240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLK 319 (608)
Q Consensus 240 ~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~ 319 (608)
...++||+|+|||+|||+|||+++++++++|++..... ..... .+++++||+|+|||||||||++++||||+++++|
T Consensus 236 ~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~~-~~~~~--~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ip 312 (597)
T COG0449 236 LCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQN-ELDLD--ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIP 312 (597)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf 64775399874078888743999999998654311322-20123--3345026999977688899999999999984898
Q ss_pred CEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 31430420100123344555057752678818999999998630244246511787631000241013674200110007
Q gi|254780943|r 320 VEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST 399 (608)
Q Consensus 320 v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT 399 (608)
|.|+.||||+|+.+.+.+++|+|+|||||||+||++|++++|++|+++++|||+++|+|+|++|++++++||||++||||
T Consensus 313 v~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsT 392 (597)
T COG0449 313 VEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVAST 392 (597)
T ss_pred EEEEEECHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCEEEEECCCCCEEEECC
T ss_conf 18996343455265788785799982676537899999999974997899981589832144540777546773324333
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 88899999999999997762120015776322799987599999999976774467798742036145521366449999
Q gi|254780943|r 400 KAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLAL 479 (608)
Q Consensus 400 Ksftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~ 479 (608)
|+||+|+++|++|++++++.+|.++.++.+.++++|+.+|+.+++++. .++.++++++.|.+.++++|||||.+||+|+
T Consensus 393 KaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~-~~~~i~~~a~~l~~~~~~~~lGRG~~ypvAl 471 (597)
T COG0449 393 KAFTAQVLALYLLALYLAKQRGTISEEEERSLIKELQKLPNHIPKVLA-AEEKIKELAKRLADAKDFFFLGRGVLYPVAL 471 (597)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 358999999999999976761754256799999999999999999971-5789999999860568789986788737676
Q ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99999999742211442324314463788079871899944801468899999999827980899956532100013466
Q gi|254780943|r 480 EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSI 559 (608)
Q Consensus 480 EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~ 559 (608)
||||||||++|+|||||++|||||||+||+|+++|||+++|++..++|+.+|++|++||||++++|++++. ....++
T Consensus 472 EgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~---~~~~~~ 548 (597)
T COG0449 472 EGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD---VAEDGD 548 (597)
T ss_pred HHHHHHHHHEEECCCCCCCHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCCC
T ss_conf 65666554213110564001323671489739973899967625789999999999716974999945776---556675
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2798688781566589999999999999998387798897986475379
Q gi|254780943|r 560 ETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 560 ~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
+.+.+|+++++++||+++||+||||||+|+.||+|||+|||||||||||
T Consensus 549 ~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~dvD~PRnLAKsVTVE 597 (597)
T COG0449 549 DLILLPEVDELLAPLLYTIPLQLLAYHIALAKGIDVDKPRNLAKSVTVE 597 (597)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf 2786688752232288889999999999997499988888656611209
No 5
>KOG1268 consensus
Probab=100.00 E-value=0 Score=1185.94 Aligned_cols=605 Identities=39% Similarity=0.621 Sum_probs=560.0
Q ss_pred CCEEEEEEC------CCHHHHHHHHHHHHHHCCCCCEEEEEEEEC--CEEEEEECCCCHHHHHHHHCC------CCCCCC
Q ss_conf 966999972------501279999999976315874348999958--929999458658998875210------347865
Q gi|254780943|r 1 MCGIVGIVG------RESVGERLFKALKRLEYRGYDSSGMATICD--GKIQCVRAQGKLSELEKELNK------KPLKGN 66 (608)
Q Consensus 1 MCGI~G~~~------~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~--~~i~~~K~~g~i~~l~~~~~~------~~~~~~ 66 (608)
|||||||.| +..+.+.|++||+|||||||||+|+++..+ .++.++|.+|+++.|.+.... .++..+
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCCCEEEHHHHHHHCCCCCCEEEEEE
T ss_conf 94156550245677478899999988887641677888536427863344452156741200688851375645013410
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEE---CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCC---H
Q ss_conf 446510454388997002675023---8899997681506899989999789889724761567888763432001---0
Q gi|254780943|r 67 IGIAHTRWATHGLPNKENSHPHCI---EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGS---S 140 (608)
Q Consensus 67 ~gIgHtR~AT~G~~~~~NahP~~~---~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~---~ 140 (608)
+||+||||||||.|++.|+|||.+ +.|++||||+|+||.+||..|+++|+.|.|+||||+|+.|.-+.+++.. +
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred EEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 35666424324887756789886899971899976702368999999996485543367258999999999861877664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCC------------------------------------
Q ss_conf 26779999998875122201004687238999749960776089------------------------------------
Q gi|254780943|r 141 KKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGHGE------------------------------------ 184 (608)
Q Consensus 141 ~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~------------------------------------ 184 (608)
|.+.+..++++++|+||+++.....|+.++++|+||||.+|.+.
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~~~~ 240 (670)
T KOG1268 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLHFL 240 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 99999999998400698887764078543565258832230124664432321012265212025534775532001434
Q ss_pred --C--CEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCC--CCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHH
Q ss_conf --6--13661376201111103798276518897305741003332--22100011000121000014078999999741
Q gi|254780943|r 185 --G--EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQG--YEIERPIQIVQIAPFLIGKGNYRHFMEKEIYE 258 (608)
Q Consensus 185 --~--~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~--~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~E 258 (608)
. +||+|||..|+.++|+++++|+|+|++.+.++.+.|...+. ....+.+++++.+...+.||+|+|||+|||||
T Consensus 241 ~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~lsihr~~~~~~~~~R~i~tlemEl~qImKG~yd~yMqKEI~E 320 (670)
T KOG1268 241 AGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTLEMELQQIMKGNYDYYMQKEIYE 320 (670)
T ss_pred CCCCEEEEEECCCCHHHEECCEEEEECCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 68952899706854210351315774067479984385689960354677311789999999997178637765667761
Q ss_pred CHHHHHHHHHCCCCCCCCCC-CCCCHHC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC
Q ss_conf 78999998715747664521-1110000--23565510352036543079999999986256673143042010012334
Q gi|254780943|r 259 QPEAISRVLSHYINLSDHTI-IPNIFNY--DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVY 335 (608)
Q Consensus 259 QP~~l~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~ 335 (608)
||+++.+++++|++.....+ +.++.++ .+++.+|+++||||||||||++.+..||.++.+||.|+.||+|..+++++
T Consensus 321 QpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pi 400 (670)
T KOG1268 321 QPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPI 400 (670)
T ss_pred CCHHHHHHCCCEECCCCCEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCC
T ss_conf 74577775056131466446615764411455311564799844408888777899999856975622144567507982
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45550577526788189999999986302442465117876310002410136742001100078889999999999999
Q gi|254780943|r 336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIY 415 (608)
Q Consensus 336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~ 415 (608)
..++.+++|||||||+||+.|+++++++||.+++|||+.||+++|++++.+.+||||||||||||+||+|.++|.|+|++
T Consensus 401 fRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpEigvAsTKaYTSQ~i~lvm~aL~ 480 (670)
T KOG1268 401 FRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQYIALVMFALW 480 (670)
T ss_pred EECCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEECHHHHHHHHHHHHHHHH
T ss_conf 00557999926876288999999888639669987525576200233442230578744533114778999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77621200157763227999875999999999767744677987420361455213664499999999999974221144
Q gi|254780943|r 416 AGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEG 495 (608)
Q Consensus 416 l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg 495 (608)
++.++- -..+...++++.|..+|+++.++|+ .++.++++|.++.+.+++.++|||++|++|+|||||+||++|+|+||
T Consensus 481 ~s~d~i-s~~~RR~eIi~gL~~l~~~ikevL~-l~~~i~~la~~l~~~~slLi~GRGy~~at~lEGAlKiKEisymHsEg 558 (670)
T KOG1268 481 MSEDRV-SKQERRKEIIDGLKDLPSQIKEVLE-LDPKIKDLAKELKDHKSLLIMGRGYNFATALEGALKIKEISYMHSEG 558 (670)
T ss_pred HCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEEECCH
T ss_conf 641156-6889899999999876999999972-16999999999751661899616643687764223331332100010
Q ss_pred CCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHH
Q ss_conf 23243144637880798718999448014688999999998279808999565321000134662798688781566589
Q gi|254780943|r 496 YAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIV 575 (608)
Q Consensus 496 ~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~ 575 (608)
+.|||+||||+||+|++.|+++++++|..+.|..++++|+.||+|+.|+|+++++.... ......+++|.+-+++++++
T Consensus 559 ilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIiic~~~~~~~~-~~~~~~~~vP~tvDClQgil 637 (670)
T KOG1268 559 ILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIIICDKGDKEEQ-KAGNKTLEVPQTVDCLQGIL 637 (670)
T ss_pred HHHCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH-CCCCEEEECCCHHHHHHHHH
T ss_conf 33144456862675488977999836755378899999998538972899538980443-24635896785445555134
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999998387798897986475379
Q gi|254780943|r 576 FSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 576 ~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
.+||||||+|++|+.||+|+|.|||||||||||
T Consensus 638 ~viPlQLlsyhlav~rg~~vD~PRnlAkSvtve 670 (670)
T KOG1268 638 NVIPLQLLSYHLAVLRGINVDFPRNLAKSVTVE 670 (670)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 340389999999998178988763100033569
No 6
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=100.00 E-value=0 Score=693.81 Aligned_cols=335 Identities=17% Similarity=0.256 Sum_probs=297.1
Q ss_pred CCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 1000014078999999741789999987157476645211110-000235655103520365430799999999862566
Q gi|254780943|r 240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNI-FNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARL 318 (608)
Q Consensus 240 ~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i 318 (608)
..+++||+|+|||+|||+|||+.+-+. . .....++ .....++++||+|+|||||||||++++||||+++++
T Consensus 8 ~~~~~~~~~~~~~~~e~~~~~~~~~~~---~-----~p~i~~~~~e~~~k~i~rI~ivaCGTSyhA~l~~ky~~E~~~~i 79 (347)
T PRK11382 8 MLDIDKSTVDFLVTENMVQEVEKVLSH---D-----VPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDL 79 (347)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 334430355057898899989999852---5-----67788999998737998799997508899999999999998699
Q ss_pred CCEEEECCHHHCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7314304201001233-445550577526788189999999986302442465117876310002410136742001100
Q gi|254780943|r 319 KVEIDVSSEFRYRDFV-YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA 397 (608)
Q Consensus 319 ~v~v~~asEf~y~~~~-~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va 397 (608)
||.++.||||+|+.|. +++++|||+|||||||+||++|++.||++|++|++|||+++|+|+|.+|.+++++||+|.+++
T Consensus 80 pv~v~~AsEF~~~~p~~~~~~tlvI~ISQSGETaDtl~Al~~ak~~Ga~tiaitN~~~S~i~r~ad~~i~~~a~~~~~v~ 159 (347)
T PRK11382 80 QVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIH 159 (347)
T ss_pred CEEEEEHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHHCCCHHHHHH
T ss_conf 84895053420058988899869999936847299999999999869967998679988888747624754466799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 07888999999999999977621200157763227999875999999999767744677987420361455213664499
Q gi|254780943|r 398 STKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPL 477 (608)
Q Consensus 398 sTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~ 477 (608)
+|++|+.++..+..++. ..+..++.++|.++|+.+.+++...++..+++++.+.+.+.+|++|||.+||+
T Consensus 160 ~~~~~~~~l~ll~~~~~----------~~~~~~~~~~L~~lp~~i~~~l~~~~~~~~~la~~~~~~~~~~~lGrG~~~pi 229 (347)
T PRK11382 160 LLLCYSVVLEMITRLAP----------NAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPL 229 (347)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 99999999999998503----------89999999999999999999998508999999999851774599824866165
Q ss_pred HH-HHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 99-99999999742211442324314463788079871899944801468899999999827980899956532100013
Q gi|254780943|r 478 AL-EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDF 556 (608)
Q Consensus 478 A~-EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~ 556 (608)
|+ ||||||||+||+|||||++|||||||+||||+++|||+++|+|++++++.++++|+++||+++++|....
T Consensus 230 a~~EgALKLKEisYIHAegy~agElKHGPiALId~~~PVi~i~~~d~~~~~~~~~i~evkarg~~vivid~~~------- 302 (347)
T PRK11382 230 GYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAE------- 302 (347)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCC-------
T ss_conf 7999999999887775233558772677086637998679995485058999999999997599089961410-------
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4662798688781566589999999999999998387798897986475
Q gi|254780943|r 557 PSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSV 605 (608)
Q Consensus 557 ~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsV 605 (608)
..|.++++++||+++||+||||||+|+.||+|||+||+|.|+|
T Consensus 303 ------~~~~~~~~l~Pil~~iPlQLlAY~~A~~rG~d~D~PRy~~kv~ 345 (347)
T PRK11382 303 ------ISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLV 345 (347)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf ------3677546784999999999999999997798989899887868
No 7
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=475.23 Aligned_cols=334 Identities=27% Similarity=0.412 Sum_probs=277.7
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 8999999741789999987157476645211110000-235655103520365430799999999862566731430420
Q gi|254780943|r 249 RHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNY-DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSE 327 (608)
Q Consensus 249 ~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asE 327 (608)
.++|++||.+||+.+++.+.... .....+.+. ....+++|+++|||||+|+++.++|++++.++.++....+||
T Consensus 2 ~~~m~~e~~~~p~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se 76 (340)
T COG2222 2 STLMLREIEQQPAVVARLLEANR-----AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASE 76 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEECHHH
T ss_conf 43468999860999999988636-----7899999999727974899981586288999999999986176035305368
Q ss_pred HHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 100123-3445550577526788189999999986302442465117876310002410136742001100078889999
Q gi|254780943|r 328 FRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQL 406 (608)
Q Consensus 328 f~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql 406 (608)
|.++.+ .+.+++++|.+||||+|+|++.+++.||+.|+++++|||.++|+|++.+|+.+++.+|+|.+|+.||+|++++
T Consensus 77 ~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~~~~ 156 (340)
T COG2222 77 FLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASL 156 (340)
T ss_pred HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 76168534689818999837899879999999852179769999637898456449733542777068899999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999999977621200157763227999875999999999767744677987420361455213664499999999999
Q gi|254780943|r 407 LVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK 486 (608)
Q Consensus 407 ~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk 486 (608)
++++.+... +.+....+..+++...+..+..+...++++..+.+.+++|++|||..||+|.|.|||+|
T Consensus 157 ~a~l~~~a~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~aLkl~ 224 (340)
T COG2222 157 LALLALLAE------------YDGDAQLLAALPDLPLEAAKALEEDAQEFAEEYADEDRIYTLGSGPLYGAAYEAALKLK 224 (340)
T ss_pred HHHHHHHHH------------HCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999888764------------41310455665112599999866778999997358977999778521799999999999
Q ss_pred HHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCC
Q ss_conf 97422114423243144637880798718999448014688999999998279808999565321000134662798688
Q gi|254780943|r 487 EISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPS 566 (608)
Q Consensus 487 E~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~ 566 (608)
|++++|+++|+++||+|||+++|++++||+++.+.|++.+-....+++++.+|++|++|...+. ....+..+.
T Consensus 225 E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~~ga~v~vi~a~~~-------~~~~~~~~~ 297 (340)
T COG2222 225 EMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKDA-------ALDLIDQRV 297 (340)
T ss_pred HHCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCC-------CCCCCCCCC
T ss_conf 8704001551134101475977379952999944874045799999999860886999747665-------667777122
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf 7815665899999999999999983877988979--8647537
Q gi|254780943|r 567 MGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRN--LAKSVTV 607 (608)
Q Consensus 567 ~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRn--LaKsVTV 607 (608)
.+++..||++++|+|+|+|++|+.||.|||.||+ |-| ||+
T Consensus 298 ~~~l~~~~~~~~v~~~~~~~~a~~rg~~pd~pr~~~~~k-v~~ 339 (340)
T COG2222 298 RHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVK-VTR 339 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE-EEE
T ss_conf 413667888878999999999986199999998366243-531
No 8
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=0 Score=478.61 Aligned_cols=213 Identities=52% Similarity=0.865 Sum_probs=207.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN 81 (608)
Q Consensus 2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~ 81 (608)
|||||+++++++.+.+++||.+||||||||+||++.+++++.+.|..|+|+++.+.....++.|++|||||||||||.++
T Consensus 1 CGI~G~~~~~~~~~~l~~~L~~LqhRG~Ds~Gi~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~g~~gIGHtR~aT~G~~~ 80 (215)
T cd00714 1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPT 80 (215)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf 97999988854699999999975468854152899819989999816833456655311367886788474434689987
Q ss_pred CCCCCCEE--ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00267502--3889999768150689998999978988972476156788876343200102677999999887512220
Q gi|254780943|r 82 KENSHPHC--IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIA 159 (608)
Q Consensus 82 ~~NahP~~--~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~ 159 (608)
+.|||||. ++++++||||+|+||.|||++|+++|+.|.|+||||||+|||+++++++.++.+|+++++++++|+||++
T Consensus 81 ~~NaqP~~s~~~~i~lvhNG~I~N~~eLr~~L~~~g~~f~s~sDtEvi~~Li~~~~~~~~~~~~ai~~~~~~l~G~ya~~ 160 (215)
T cd00714 81 DVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALA 160 (215)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 55787869799989999888244778999999977988258995799999999998619987999999997603021888
Q ss_pred HHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 1004687238999749960776089613661376201111103798276518897
Q gi|254780943|r 160 VIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAII 214 (608)
Q Consensus 160 il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i 214 (608)
+++.++|++||++|+++||++|++++.+++|||++||..++++|++|+|||+++|
T Consensus 161 i~~~~~~~~l~~~R~~~PL~~g~~~~~~~~aSE~~Al~~~~~~~~~l~~geiv~I 215 (215)
T cd00714 161 VISKDEPDEIVAARNGSPLVIGIGDGENFVASDAPALLEHTRRVIYLEDGDIAVI 215 (215)
T ss_pred EEECCCCCCEEEECCCCCEEEEEECCEEEEEECHHHHHHHCCEEEEECCCCEEEC
T ss_conf 9973899808997599978999819999999788998884586999789969969
No 9
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=0 Score=421.81 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=200.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN 81 (608)
Q Consensus 2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~ 81 (608)
|||||+++++++.+.+++||.+||||||||+||++.+++++.+.|+.|+|+++.+....+.++|++|||||||||||.++
T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LqHRG~dsaGIa~~d~~~i~~~K~~G~V~~vf~~~~~~~l~G~~gIGH~RysT~G~~~ 80 (252)
T cd00715 1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSS 80 (252)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 97999988866799999999987037823276899839989999769846554424443237774897676322269971
Q ss_pred CCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 00267502----38899997681506899989999789889724761567888763432001026779999998875122
Q gi|254780943|r 82 KENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYS 157 (608)
Q Consensus 82 ~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya 157 (608)
..|||||. .+++++||||+|+||.+||++|+.+|+.|.|+||||||+|||++.+++ .++.+++++++++++|+||
T Consensus 81 ~~naqP~~~~~~~g~ialvHNG~I~N~~eL~~~l~~~g~~f~s~sDTEvI~~li~~~~~~-~~~~~~i~~~~~~l~Gays 159 (252)
T cd00715 81 LENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAK-DDLFEAIIDALERVKGAYS 159 (252)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCEE
T ss_conf 004787441589976999995388899999999985699876588899999999865410-5299999999996121258
Q ss_pred HHHHCCCCCCEEEEEE--CC-CCEEEEC-CCCCEEEECCCCCCCCCC-CEEEECCCCEEEEEECCCCEECCCC
Q ss_conf 2010046872389997--49-9607760-896136613762011111-0379827651889730574100333
Q gi|254780943|r 158 IAVIFEDDPHSIIVAR--KG-PPLIIGH-GEGEMFVGSDVTALTLLT-DKVTYMEDGDWAIIRNSGLTIYDSQ 225 (608)
Q Consensus 158 ~~il~~~~p~~i~~ar--~g-sPL~iG~-~~~~~~vaSd~~al~~~t-~~~~~L~dgei~~i~~~~~~i~~~~ 225 (608)
+++++. +.||++| .| .||++|+ +++.+++|||.+||.... +.+..|++||++.|++++++.+...
T Consensus 160 l~~l~~---~~l~~~RD~~GirPL~~G~~~~~~~~vASEs~Al~~~g~~~irev~pGEiv~i~~~g~~~~~~~ 229 (252)
T cd00715 160 LVIMTA---DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESSQRA 229 (252)
T ss_pred EEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCEEEEECCCCEEEEEECCCCEEEECC
T ss_conf 999998---9899998888887659999249808998535656305865999718983899958971999807
No 10
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=411.68 Aligned_cols=216 Identities=25% Similarity=0.453 Sum_probs=195.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
||||||+++++++.+.++.||..||||||||+||++.+++++...|..|.++++.+.-....++|++|||||||||||.+
T Consensus 1 MCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~k~~GlV~~vf~~~~l~~l~G~~~IGHvRYsT~G~~ 80 (445)
T PRK08525 1 MCAVVGVINSKNAAKYAYYALFAMQHRGQEASGISVSNGKKIKTIKARGLVTQVFNPDKLKTLKGESAIGHNRYSTAGND 80 (445)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHCCHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 97599998885239999999998644661401699985998999967887777328103532888589977105679999
Q ss_pred CCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 7002675023----889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 81 NKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 81 ~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
+..|||||.. |++++||||+|+|+.+||++|+++|+.|.|+||||+|+|||... ...++.+++++++++++|+|
T Consensus 81 s~~naQP~~~~~~~G~iaivHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~--~~~~~~~~i~~~~~~i~GaY 158 (445)
T PRK08525 81 SILDAQPIFARYDLGEIAIVHNGNLVNKEEVRSRLIQDGAIFQTNMDTENIIHLIARS--KKESLKDRIIEALKKIIGAY 158 (445)
T ss_pred CCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHCCCCE
T ss_conf 6336798872489988999993376089999999986897144656667889999865--03568999999998545628
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEEC-CCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEE
Q ss_conf 220100468723899974--9-9607760-89613661376201111-1037982765188973057410
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGH-GEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTI 221 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~-~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i 221 (608)
|++++.. +.+|++|. | .||++|+ +++.|++|||.+||... .+.+..+++||++.|++++.++
T Consensus 159 slvil~~---~~l~~~RDp~GiRPL~lGk~~~~~yivASEs~Al~~ig~~~irdv~PGEiv~i~~~~~~~ 225 (445)
T PRK08525 159 CLVLLSR---DKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLVGAEFIRDVKPGEMLIFEEGNDEF 225 (445)
T ss_pred EEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCCEE
T ss_conf 9999869---989999897777643899966976999975244424597799834898799998799739
No 11
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=407.81 Aligned_cols=219 Identities=27% Similarity=0.427 Sum_probs=199.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
+|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.|+++.+.-..+.+.|++|||||||||||.+
T Consensus 11 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqeSaGIa~~d~~~i~~~K~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~G~~ 90 (471)
T PRK06781 11 ECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGS 90 (471)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCCC
T ss_conf 75389998881239999999998735751330699987987999807860756407141541898789999724789999
Q ss_pred CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
+..|||||. .+++++||||+|+|+.+||++|+.+|+.|+|+||||||+|||++.. ..++.++++.++++++|+|
T Consensus 91 ~~~naQP~~~~~~~g~ialaHNGnl~N~~eLr~~L~~~G~~f~s~sDTEvI~~lia~~~--~~~~~~~i~~~~~~i~GAY 168 (471)
T PRK06781 91 EVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRST--KDSLIESVKEALNKVKGAF 168 (471)
T ss_pred CCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCCE
T ss_conf 74358998830689889999950451999999999975986766770999999998623--4689999999998657718
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf 220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS 224 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~ 224 (608)
|++++.. +.+|++|. | .||++|+.++.|++|||.+||... .+.+..+++||++.|+++++.....
T Consensus 169 Slvil~~---~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~~~~~~ 237 (471)
T PRK06781 169 AYLLLTG---NEMIVALDPNGFRPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRF 237 (471)
T ss_pred EEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf 9999989---97999989887751499970998999965135422397699816996599994895789964
No 12
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=404.12 Aligned_cols=220 Identities=27% Similarity=0.448 Sum_probs=198.4
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 669999725-0127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 2 CGIVGIVGR-ESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 2 CGI~G~~~~-~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
|||||+++. +++...++.||..|||||||||||++.+++++...|+.|.|+++++.-..+.+.|++|||||||+|+|..
T Consensus 29 CGVfGi~s~~~~va~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~~vF~~~~l~~L~G~~gIGHvRYsT~G~~ 108 (495)
T PRK07349 29 CGVFGIYAPGEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSS 108 (495)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCHHHCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 80899975993568999999998760571500599985998999908971533069646965899788756215889999
Q ss_pred CCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 7002675023----889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 81 NKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 81 ~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
+..|||||.. |+++++|||+|.|+.+||++|+++|+.|.|+||||||+|||...++++.++.++++.++++++|+|
T Consensus 109 ~~~NaQP~~~~~~~G~ialaHNGnL~N~~eLr~~L~~~G~~F~s~sDsEvi~~lIa~~~~~~~d~~~ai~~~~~~i~GAY 188 (495)
T PRK07349 109 RVANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFRLCQGAF 188 (495)
T ss_pred CCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
T ss_conf 75317974886799979999943696999999999967997656760899999999987538989999999998607507
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC----EEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf 220100468723899974--9-96077608961----3661376201111-1037982765188973057410033
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE----MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS 224 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~----~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~ 224 (608)
|++++.. +.+|++|. | .||++|+.++. |++|||.+||... .+.+..+++||++.|++++++.+..
T Consensus 189 Slvilt~---~~lia~RDP~GiRPL~lG~~~~~~~~~yvvASEs~Ald~lg~e~iRdv~PGEiv~I~~~g~~s~~~ 261 (495)
T PRK07349 189 SLVIGTP---EGLMGVRDPNGIRPLVIGTLEENGPGRYVLASETCALDIIGADYLRDVEPGELVWITEGGLESFRW 261 (495)
T ss_pred EEEEEEC---CEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHCCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9999749---869999898887523899954888857999987464204496588638998599981796368861
No 13
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=400.51 Aligned_cols=216 Identities=30% Similarity=0.560 Sum_probs=192.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
||||||+++++++...+++||.+|||||||||||++.+++++.+.|..|.|+++++......++|++|||||||||+|.+
T Consensus 1 MCGIfGi~~~~~~~~~l~~gL~~LQHRGqesaGIa~~d~~~i~~~K~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~G~~ 80 (503)
T PRK09246 1 MCGIVGIVGNSPVNQLIYDALTVLQHRGQDAAGIVTIDGGRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSS 80 (503)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHCCCCHHCCCCCEEEEEECCCCCCCC
T ss_conf 97699998674389999999998615654644799995998999947984533306010312888689978026568999
Q ss_pred CCCCCCCEEEC---CEEEEECCEECCHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHHC-------CHHHHHHHHHH
Q ss_conf 70026750238---8999976815068999899997898-8972476156788876343200-------10267799999
Q gi|254780943|r 81 NKENSHPHCIE---GIAVTHNGIIENFSRLKKEHFSSQQ-VFLTETDTEVIACLLEKFIKNG-------SSKKETMQKLM 149 (608)
Q Consensus 81 ~~~NahP~~~~---~~~vvHNG~I~N~~elr~~l~~~g~-~f~s~tDsEvi~~li~~~~~~~-------~~~~~ai~~~~ 149 (608)
+.+|||||..+ +++++|||+|.|+.+||++|..+|+ +|+|+||||+|+|||++++.+. .++.+++++++
T Consensus 81 s~~NaQP~~~~~~~gialaHNGnI~N~~eLr~~L~~~~~~~~~t~sDsEvil~lia~~l~~~~~~~~~~~~i~~al~~~~ 160 (503)
T PRK09246 81 SSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEIDRRHINTTSDSEVLLNVFAHELQKSRGLPLTPEDIFAAVAAVH 160 (503)
T ss_pred CCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 74258970646888789998444378999999998665765467871999999999987640456898789999999999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC----EEEECCCCCCCCC-CCEEEECCCCEEEEEECCC
Q ss_conf 9887512220100468723899974--9-96077608961----3661376201111-1037982765188973057
Q gi|254780943|r 150 QCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE----MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSG 218 (608)
Q Consensus 150 ~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~----~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~ 218 (608)
++++|+||+++|..+ +.+|++|. | .||++|+.+++ |++|||.+||... .+.+..+++||++.|++++
T Consensus 161 ~~i~GaYslv~~~~~--~~l~a~RDp~GiRPL~lGk~~~~~~~~yvvASEs~Al~~ig~~~irdv~PGEiv~I~~~G 235 (503)
T PRK09246 161 RRVRGAYAVVAMIIG--HGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (503)
T ss_pred HHCCCCEEEEEEECC--CEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEEECCC
T ss_conf 757861699999629--749999888887642777531799834999852134540497289954898799995799
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=399.48 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=198.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
.|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.|+++++....+.+.|++|||||||+|+|..
T Consensus 11 eCGI~Gi~~~~d~~~~~y~GL~~LQHRGQesaGIa~~d~~~~~~~K~~GlV~~vf~~~~l~~L~G~~gIGHvRYsT~G~~ 90 (475)
T PRK07631 11 ECGVFGIWGHEEAAQITYYGLHSLQHRGQEGAGIVVTDGEKLSAHKGLGLVTEVFQNGELDKLKGKGAIGHVRYATAGGG 90 (475)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCCCHHHCCCCCEEEEEEECCCCCCC
T ss_conf 76289999880229999999998624760232799983998999917983655308350531888689999765778999
Q ss_pred CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
+.+||||+. .|+++++|||+|+|+.+||++|+.+|+.|+|+||||||+|||+.. ...++.++++.++++++|+|
T Consensus 91 ~~~naQP~~~~~~~g~ialaHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~--~~~~~~~~i~~a~~~i~GaY 168 (475)
T PRK07631 91 GYENVQPLLFRSQNGSLALAHNGNLVNATQLKQQLENQGSIFQTTSDTEVLAHLIKRS--GHFTLKEQIKNALSMLKGAY 168 (475)
T ss_pred CCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHCCEE
T ss_conf 7535899884279997999997654799999999996798543378589999999853--58989999999999612608
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf 220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS 224 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~ 224 (608)
|++++.. +.+|++|. | .||++|+.++.+++|||.+||... .+.+..+++||++.|++++++....
T Consensus 169 Slvil~~---~~l~~~RDp~GiRPL~~Gk~~~~~~vASEs~Al~~~g~~~irdv~PGEiv~I~~~g~~s~~~ 237 (475)
T PRK07631 169 AFLIMTE---TEMIVALDPNGLRPLSLGRLGDAYVVASETCAFDVIGATYLREVEPGELLIINDEGMKSERF 237 (475)
T ss_pred EEEEECC---CEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf 9999628---73999999887643699998999999965045424597799816996699997895689953
No 15
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=393.36 Aligned_cols=217 Identities=29% Similarity=0.470 Sum_probs=197.0
Q ss_pred CEEEEEECCC--HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 6699997250--12799999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r 2 CGIVGIVGRE--SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL 79 (608)
Q Consensus 2 CGI~G~~~~~--~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~ 79 (608)
|||||+++.+ ++.+.++.||.+||||||||||||+.+++++.+.|+.|.|+++++......+.|++|||||||+|+|.
T Consensus 18 CGI~GI~~~~~~~~~~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~dvF~~~~l~~l~G~~gIGHvRYsT~G~ 97 (472)
T PRK05793 18 CGVFGVFSNKEIDVASITYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGA 97 (472)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 63899996884406999999999863678775789998699899995898676741821474288738999952567899
Q ss_pred CCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 97002675023----88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 80 PNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 80 ~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
.+.+||||+.. |+++++|||+|.|+.+||++|+++|+.|+|+||||+|+|||.+... .++.+++++++++++|+
T Consensus 98 ~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~F~s~sDTEvI~~Lia~~~~--~~~~~~i~~~~~~i~Ga 175 (472)
T PRK05793 98 SKLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGQIFQTSIDSEVILNLIARSAK--KGLEKAVVDAIQAIKGS 175 (472)
T ss_pred CCCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCC
T ss_conf 9743478857438999899999642069999999999608866767707899999987512--89999999999746662
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCC-CCCEEEECCCCEEEEEECCCCEECC
Q ss_conf 2220100468723899974--9-96077608961366137620111-1103798276518897305741003
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTL-LTDKVTYMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~-~t~~~~~L~dgei~~i~~~~~~i~~ 223 (608)
||++++.. +.+|++|. | .||++|+.++.+++|||.+||.. -.+.+..+++||++.|++++++.+.
T Consensus 176 Yslvil~~---~~l~a~RDp~GiRPL~~G~~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~~s~~ 244 (472)
T PRK05793 176 YALVILTE---DKLIGVRDPHGIRPLCLGKIEDGYILSSESCALDTIGAEFVRDIEPGEIVIIDEDGIKSIK 244 (472)
T ss_pred EEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEE
T ss_conf 79999879---9799997888876259987276899984430001438669981699749999589707984
No 16
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=395.48 Aligned_cols=217 Identities=29% Similarity=0.486 Sum_probs=196.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 66999972501279999999976315874348999958929999458658998875210347865446510454388997
Q gi|254780943|r 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPN 81 (608)
Q Consensus 2 CGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~ 81 (608)
|||||+++++++...++.||.+|||||||||||++.+++++.+.|+.|.|+++.+.. .+.+.|++|||||||+|+|..+
T Consensus 20 CGI~Gi~~~~~~~~~~~~gL~aLQHRGQESaGIa~~dg~~i~~~K~~GlV~~vf~~~-~~~l~G~~gIGHvRYsT~G~~~ 98 (474)
T PRK06388 20 CAVVGFKGGINAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPA-TDPIKGIVGVGHTRYSTAGSKG 98 (474)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCHHHCEEEEECCCEEEEEECCCCHHHHHCHH-HHCCCCCEEEEECCCCCCCCCC
T ss_conf 638999898448999999999977235424479998399899992696989954202-1048987887367777799996
Q ss_pred CCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 002675023----8899997681506899989999789889724761567888763432001026779999998875122
Q gi|254780943|r 82 KENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYS 157 (608)
Q Consensus 82 ~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya 157 (608)
.+|||||.. +.++++|||+|+|+.+||++|+.+|+.|+|+||||+|+|+|...+.+ .++.+++++++++++|+||
T Consensus 99 ~~naQP~~~~~~~g~ialaHNGNL~N~~eLr~eL~~~G~~f~s~sDtEvil~~ia~~~~~-~~~~~~i~~~~~~~~GaYs 177 (474)
T PRK06388 99 VENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISK-YGLKEGFERSMERLRGAYA 177 (474)
T ss_pred CCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCCEEE
T ss_conf 225898475589972999984025699999977874797666667199999999986021-6999999999985676289
Q ss_pred HHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf 20100468723899974--9-960776089613661376201111-103798276518897305741003
Q gi|254780943|r 158 IAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 158 ~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~ 223 (608)
++++.. +.+|++|. | .||++|+.+++|++|||.+||... .+.+..+++||++.|+++++..+.
T Consensus 178 lv~l~~---~~l~~~RDp~GiRPL~~Gk~~~~~vvASEs~Al~~lg~~~irdV~PGEiv~I~~~g~~s~~ 244 (474)
T PRK06388 178 CALMIN---DRLYAIRDPNGIRPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIF 244 (474)
T ss_pred EEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCEEEECCCCCEEEEECCCCCEEEE
T ss_conf 999759---9199998988774217998088789995256655328627444899249997289836999
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=389.66 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=195.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887-52103478654465104543889
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEK-ELNKKPLKGNIGIAHTRWATHGL 79 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~-~~~~~~~~~~~gIgHtR~AT~G~ 79 (608)
.|||||+++++++...++.||.+|||||||||||++.+++++...|+.|.++++.+ ....+.+.|++|||||||+|+|.
T Consensus 11 eCGIfGi~~~~~~~~~ly~gL~aLQHRGQeSaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHvRYsT~G~ 90 (484)
T PRK07272 11 ECGVFGIWGHPDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDRLTGNAAIGHVRYATAGS 90 (484)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 76079998883039999999998754770203599982998999915851756424734553277768999963477899
Q ss_pred CCCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9700267502----388999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 80 PNKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 80 ~~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
.+.+|+||+. .++++++|||+|.|+.+||++|+.+|+.|.|+||||||+|||+... +.++.++++.++++++|+
T Consensus 91 ~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~f~s~sDTEvI~~LI~~~~--~~~~~~~i~~~~~~i~Ga 168 (484)
T PRK07272 91 ASIENIQPFLYHFHDGQVALCHNGNLTNAKSLRKELEKQGAIFHSSSDTEILMHLIRRSH--NPTFMGALKEALNTVKGG 168 (484)
T ss_pred CCCCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCC
T ss_conf 974358997630689868998833163999999999976982435881999999998640--688999999999972574
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEEC-CCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf 2220100468723899974--9-9607760-89613661376201111-103798276518897305741003
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGH-GEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~-~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~ 223 (608)
||++++.. +.+|++|. | .||++|+ +++.|++|||.+||... .+.+..+++||++.|++++++...
T Consensus 169 YSlvil~~---~~l~a~RDp~GiRPL~~Gk~~~g~yvvASEs~Al~~ig~~~irdv~PGEiv~i~~~g~~~~~ 238 (484)
T PRK07272 169 FAYLLLTE---DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEFVRDVQPGEVVVIDDDGIQVDS 238 (484)
T ss_pred EEEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCEEEEE
T ss_conf 89999859---92999989988764289995797299996625642469769984389769999579658996
No 18
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=386.51 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=196.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHC-CCCCCCCEEEEEECCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521-03478654465104543889
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELN-KKPLKGNIGIAHTRWATHGL 79 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~-~~~~~~~~gIgHtR~AT~G~ 79 (608)
.|||||++++.++...++.||.+|||||||||||++.+++++..+|+.|.|+++.+... ...++|++|||||||+|+|.
T Consensus 13 eCGIfGi~~~~~~a~~~~~gL~aLQHRGQesaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHvRYST~G~ 92 (480)
T PRK09123 13 ECGVFGIFGHPDAAAITALGLHALQHRGQEAAGIVSFDGERFHSERRLGLVGDNFTDADVIARLPGNRAIGHVRYSTTGE 92 (480)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHCCCHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 76289999781549999999999753785611499982998999973742012016523563389858899985678999
Q ss_pred CCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 97002675023----88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 80 PNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 80 ~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
.+.+|+||+.. |+++++|||+|.|+.+||++|+++|+.|+|+||||||+|||+... ..++.++++.++++++|+
T Consensus 93 ~~~~n~QP~~~~~~~g~ialahNGnI~N~~eLr~~L~~~G~~F~s~sDTEvIl~lia~~~--~~~~~e~i~~a~~~i~Ga 170 (480)
T PRK09123 93 TILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELVRRGAIFQSTSDTEVILHLIARSR--KSSFLDRFIDALRQVEGA 170 (480)
T ss_pred CCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCC
T ss_conf 874468875822799868999724246899999999967984223781899999997622--577899999999865664
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECC
Q ss_conf 2220100468723899974--9-960776089613661376201111-103798276518897305741003
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~ 223 (608)
||++++.. +.+|++|. | .||++|+.++.|++|||.+||... .+.+..+++||++.|+++++..+.
T Consensus 171 Yslvilt~---~~l~a~RDp~GiRPL~lGk~~~~yvvASEs~Al~~lg~e~irdv~PGEiv~I~~~g~~s~~ 239 (480)
T PRK09123 171 YSLVALTN---KKLIGARDPLGIRPLVLGELDGSYILASETCALDIIGAEFVRDVEPGELVVIDEKGLTSIK 239 (480)
T ss_pred EEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHCCCCCEEEEECCCCEEEEEECCCEEEEE
T ss_conf 89999989---9599998988876338998599899986300210568659995489749999689707999
No 19
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=380.52 Aligned_cols=215 Identities=27% Similarity=0.462 Sum_probs=192.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 96699997250127999999997631587434899995892999945865899887521034786544651045438899
Q gi|254780943|r 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLP 80 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~ 80 (608)
.|||||+++ +++.+.++.||.+|||||||||||++.+ +++..+|..|.|+++++.-....+.|++|||||||+|+|.
T Consensus 4 eCGIfGv~s-~d~~~~~~~GL~~LQHRGqesaGIa~~d-g~~~~~k~~GlV~~vf~~~~l~~l~G~~gIGHvRYsT~Gs- 80 (442)
T PRK08341 4 KCGIFAAYS-ENAPKKAYYGLIALQHRGQEGAGISVWK-GRIRTVKGHGLVSEVFKGGSLSSLRSNLAIGHVRYSTSGS- 80 (442)
T ss_pred CCEEEEEEC-CCCHHHHHHHHHHHHCCCCCEEEEEEEC-CCEEEEECCCCHHHHCCCCHHHCCCCCEEEEEEECCCCCC-
T ss_conf 753899988-9628999999998616773410499999-9589994687500101514143289848998810668899-
Q ss_pred CCCCCCCEE----ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 700267502----3889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 81 NKENSHPHC----IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 81 ~~~NahP~~----~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
..|+||+. .++++++|||+|+|+.+||++|+++|++|.|++|||+|++++...+.+..+..++++.++++++|+|
T Consensus 81 -~~n~QP~~~~~~~g~ialaHNGNI~N~~eLr~~L~~~G~~F~s~sDTEvI~~~~~~~~~~~~~~~eai~~~~~~i~GaY 159 (442)
T PRK08341 81 -LSEVQPLEVECCGYKLAIAHNGTLTNFLPLRRSYESRGFKFHSSIDTELIGVSFLNHYSELGDEFEAMREVFNEVKGAY 159 (442)
T ss_pred -CCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
T ss_conf -7346997423689979999823651899999999966996778670999999999987741759999999999606748
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECC
Q ss_conf 220100468723899974--9-960776089613661376201111103798276518897305741003
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~ 223 (608)
|++++.. +.+|++|. | .||++|+++ ++++|||.+||.....++..+++||++.|++++++...
T Consensus 160 sl~il~~---~~l~a~RDp~GiRPL~lGk~d-~~~vASEs~Al~~~g~~irdv~PGEii~i~~~~~~s~~ 225 (442)
T PRK08341 160 SVAILFD---GKIIVARDPVGFRPLSYGEGD-GYYFASEDSALRMFGGEIRDVRPGEVFVVSEGEVESKV 225 (442)
T ss_pred EEEEEEC---CEEEEEECCCCCCCEEEECCC-EEEEEECHHHHHHCCCEEEECCCCEEEEECCCCEEEEE
T ss_conf 8999979---939999898887433886187-59999513577517955897369848997599479996
No 20
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=0 Score=373.33 Aligned_cols=210 Identities=30% Similarity=0.405 Sum_probs=185.4
Q ss_pred CEEEEEECCC---HHHHHHHHHHHHHHCCCC-CEEEEEEEECC---------EEEEEECCCCHHHHHHHHCCCCCCCCEE
Q ss_conf 6699997250---127999999997631587-43489999589---------2999945865899887521034786544
Q gi|254780943|r 2 CGIVGIVGRE---SVGERLFKALKRLEYRGY-DSSGMATICDG---------KIQCVRAQGKLSELEKELNKKPLKGNIG 68 (608)
Q Consensus 2 CGI~G~~~~~---~~~~~l~~~L~~Le~RG~-Ds~Gia~~~~~---------~i~~~K~~g~i~~l~~~~~~~~~~~~~g 68 (608)
|||||+++++ ++.+.+++||.+|||||| ||||++++++. .+.+.|+.|.++++.+....+.++|++|
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~L~~LqhRGq~dsaGia~~~~~~~~~~~~g~~~~~~K~~G~v~~v~~~~~l~~~~g~~~ 80 (249)
T cd01907 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHW 80 (249)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCEEEEECCCCHHHHHHHHCCCCCCCCEE
T ss_conf 97999985898754899999999997078971425799984898458634760478853788999986644002676367
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHH----
Q ss_conf 6510454388997002675023889999768150689998999978988972476156788876343200102677----
Q gi|254780943|r 69 IAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKET---- 144 (608)
Q Consensus 69 IgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~a---- 144 (608)
||||||||||.++..|||||+.+++++||||+|+||.+||++|..+|+.|.|+||||||+|||+++++++.++.++
T Consensus 81 IGH~RysT~g~~~~~~aqPf~~~~~~lvhNG~i~N~~~lr~~l~~~g~~f~s~sDsEvi~~li~~~~~~~~~~~~~~~~~ 160 (249)
T cd01907 81 IAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHI 160 (249)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 63050356899864577774059886881541316999999999769972328808999999999987379837899986
Q ss_pred ---------------HHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCC----CCCE
Q ss_conf ---------------999999887512220100468723899974--9-96077608961366137620111----1103
Q gi|254780943|r 145 ---------------MQKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTL----LTDK 202 (608)
Q Consensus 145 ---------------i~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~----~t~~ 202 (608)
+...+.+++|+||+++++. +.++++|. | .||++|++++.+++|||.+||.. ..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ldG~yal~i~~~---~~l~~~RD~~GiRPL~~g~~~~~~~vASEs~Al~~i~~~~~~~ 237 (249)
T cd01907 161 IRMPEEERELLLALRLTYRLADLDGPFTIIVGTP---DGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPDRDNAK 237 (249)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC---CEEEEEEECCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCE
T ss_conf 4111111200189999988861577559999989---9469998148999869998499999996599998604857336
Q ss_pred EEECCCCEEEEE
Q ss_conf 798276518897
Q gi|254780943|r 203 VTYMEDGDWAII 214 (608)
Q Consensus 203 ~~~L~dgei~~i 214 (608)
++++++||+++.
T Consensus 238 v~e~~pGE~vv~ 249 (249)
T cd01907 238 VWEPRPGEYVIW 249 (249)
T ss_pred EECCCCCEEEEC
T ss_conf 833789868969
No 21
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=359.77 Aligned_cols=217 Identities=25% Similarity=0.416 Sum_probs=193.0
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 999972-5012799999999763158743489999589299994586589988752103478654465104543889970
Q gi|254780943|r 4 IVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGLPNK 82 (608)
Q Consensus 4 I~G~~~-~~~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~~~~ 82 (608)
|||+++ .+++...++.||..|||||||||||++.+++++.++|+.|.|+++++....+.+.|++|||||||+|.|..+.
T Consensus 1 VfGi~~~~~~va~~~y~gL~aLQHRGQEsAGIa~~dg~~i~~~K~~GLV~~vF~e~~l~~L~G~~~IGHvRYSTtG~s~~ 80 (489)
T PRK07847 1 VFGVWAPGEEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTW 80 (489)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 98995598267899999988875156141028998399899990786354405832475099858986734368999973
Q ss_pred CCCCCEEE----C-CEEEEECCEECCHHHHHHHHHHCCCE-----EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 02675023----8-89999768150689998999978988-----97247615678887634320010267799999988
Q gi|254780943|r 83 ENSHPHCI----E-GIAVTHNGIIENFSRLKKEHFSSQQV-----FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCL 152 (608)
Q Consensus 83 ~NahP~~~----~-~~~vvHNG~I~N~~elr~~l~~~g~~-----f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l 152 (608)
+|+||+.. + +++++|||+|.|+.+||++|.++|.. |+|.+|||||+|||.+...+ .++.++++.+++++
T Consensus 81 ~n~QP~~~~~~~g~~iAlaHNGNL~N~~eLr~~L~~~G~i~~~~~f~s~sDTEvi~~lia~~~~~-~~i~~~i~~~~~~i 159 (489)
T PRK07847 81 ENAQPTFRNTAAGTGVALGHNGNLVNTAELAARARDLGLIAGRCPAPATTDSDLLTALLAHGAAD-STLEQAALELLPTV 159 (489)
T ss_pred CCCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHC
T ss_conf 13788564068997289984585068999999999668743334678774799999999734676-77999999999860
Q ss_pred HHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCCEECCC
Q ss_conf 7512220100468723899974--9-960776089613661376201111-1037982765188973057410033
Q gi|254780943|r 153 TGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDS 224 (608)
Q Consensus 153 ~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~~i~~~ 224 (608)
+|+||++++.. +.+|++|. | .||++|+.++.+++|||.+||... .+.+..+++||++.|++++++....
T Consensus 160 ~GaYslvil~~---~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~e~irdV~PGEiv~I~~~G~~s~~~ 232 (489)
T PRK07847 160 RGAFCLTFMDE---HTLYAARDPYGVRPLVLGRLERGWVVASETAALDIVGASFVREIEPGELLAIDADGVRSTRF 232 (489)
T ss_pred CCCEEEEEEEC---CEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 67479999856---83999988777753278971886899955012113497599816997089981896179852
No 22
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=100.00 E-value=0 Score=364.03 Aligned_cols=215 Identities=28% Similarity=0.500 Sum_probs=194.2
Q ss_pred CEEEEEECCCHHH--HHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 6699997250127--99999999763158743489999589299994586589988752103478654465104543889
Q gi|254780943|r 2 CGIVGIVGRESVG--ERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHGL 79 (608)
Q Consensus 2 CGI~G~~~~~~~~--~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G~ 79 (608)
|||||++++.+.. ..+++||..||||||||||+++.+++++...|+.|+|+++++.-..+.++|+.++||+||+|.|.
T Consensus 1 CGV~G~~~~~~~~~~~~~YygL~aLQHRGQEsAG~~~~dg~~~~~~~~~GLV~dVF~~~~l~~L~G~~~~GHVRYSTaGs 80 (467)
T TIGR01134 1 CGVFGVVSQEEVAGAELTYYGLYALQHRGQESAGVTVSDGNKTRLHKGNGLVSDVFNEETLARLKGNVGAGHVRYSTAGS 80 (467)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCEEHCCCCHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 94785246600125557889987432104051147973697899996185002005802488634660345533732488
Q ss_pred CCC-CCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCC--CEEEECCCHHHHHHHHHHHHH------H-CCHHHHHH
Q ss_conf 970-02675023----8899997681506899989999789--889724761567888763432------0-01026779
Q gi|254780943|r 80 PNK-ENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQ--QVFLTETDTEVIACLLEKFIK------N-GSSKKETM 145 (608)
Q Consensus 80 ~~~-~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g--~~f~s~tDsEvi~~li~~~~~------~-~~~~~~ai 145 (608)
... .||||+.. |.++++|||++.|..|||++|+.+| ++|+|++||||+.+|+...+. . ..++++++
T Consensus 81 s~~~~naQPf~v~~~~Gg~~lAHNGNLvN~~eLr~~l~~~G~~~~F~t~~DsEV~~~l~~~e~~~~~~l~~~~~~~~~~~ 160 (467)
T TIGR01134 81 SGSSENAQPFVVSSPYGGLALAHNGNLVNADELRRELEEEGDRRHFNTTSDSEVLLNLLAHELDVQNKLESDKDDLFDAV 160 (467)
T ss_pred CCCCCCCCCCEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 87432224556522677656898787212599999998379844256487089999999613731113464314789999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-CCEEEECCCCC---EEEECCCCCCCCCCCE-EEECCCCEEEEEECCC
Q ss_conf 9999988751222010046872389997--49-96077608961---3661376201111103-7982765188973057
Q gi|254780943|r 146 QKLMQCLTGSYSIAVIFEDDPHSIIVAR--KG-PPLIIGHGEGE---MFVGSDVTALTLLTDK-VTYMEDGDWAIIRNSG 218 (608)
Q Consensus 146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar--~g-sPL~iG~~~~~---~~vaSd~~al~~~t~~-~~~L~dgei~~i~~~~ 218 (608)
..+++.++|+||+++|.. +.++++| +| -||++|..+++ ++||||++||.-...+ ++.+++||++.++.++
T Consensus 161 ~~~~~~~~GAY~lv~m~~---~~l~a~RDP~G~RPLvlG~~~~g~~~y~vASE~cAld~~g~~~~RDV~PGE~v~~~~~g 237 (467)
T TIGR01134 161 AEVLERVRGAYALVAMGE---DGLVAVRDPHGVRPLVLGRLGDGGTEYVVASESCALDVLGAEFVRDVEPGEVVVTFDGG 237 (467)
T ss_pred HHHHHHCCCEEEEEEEEC---CEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEECCCC
T ss_conf 999854474379999727---70799988867676100213578410378850278642041003304883599981895
Q ss_pred C
Q ss_conf 4
Q gi|254780943|r 219 L 219 (608)
Q Consensus 219 ~ 219 (608)
.
T Consensus 238 ~ 238 (467)
T TIGR01134 238 K 238 (467)
T ss_pred E
T ss_conf 5
No 23
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=356.23 Aligned_cols=219 Identities=29% Similarity=0.526 Sum_probs=193.4
Q ss_pred CCEEEEEECCCH--HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCC-CCCCCEEEEEECCCCC
Q ss_conf 966999972501--2799999999763158743489999589299994586589988752103-4786544651045438
Q gi|254780943|r 1 MCGIVGIVGRES--VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK-PLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~~--~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~-~~~~~~gIgHtR~AT~ 77 (608)
||||||+++.++ +.+.++.||..|||||||||||++.+++++...|..|.|+++++.-... .+.|++|||||||+|.
T Consensus 4 ~CGV~Gi~~~~~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTa 83 (470)
T COG0034 4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTA 83 (470)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 10489996477665679999999987617853133899769557998447501221271656641467612567640478
Q ss_pred CCCCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 8997002675023----889999768150689998999978988972476156788876343200102677999999887
Q gi|254780943|r 78 GLPNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLT 153 (608)
Q Consensus 78 G~~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~ 153 (608)
|..+..||||+.. +.++++|||++.|..+||++|.++|+.|+|++||||++|+|+..+.+ .+++++++.++++++
T Consensus 84 G~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~-~~~~~a~~~~~~~v~ 162 (470)
T COG0034 84 GSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDE-DDIFEAVKEVLRRVK 162 (470)
T ss_pred CCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHCC
T ss_conf 8865300554489369985899965753688999999986496523786089999999744020-248999999986467
Q ss_pred HHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC-EEEECCCCCCCCC-CCEEEECCCCEEEEEECCC--CEECC
Q ss_conf 512220100468723899974--9-96077608961-3661376201111-1037982765188973057--41003
Q gi|254780943|r 154 GSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE-MFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSG--LTIYD 223 (608)
Q Consensus 154 G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~-~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~--~~i~~ 223 (608)
|+||+++|.. +.++++|+ | .||++|.-+++ +++|||++||--. .+-++.+++||+++|+.++ ++...
T Consensus 163 G~ys~v~~~~---~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~ 236 (470)
T COG0034 163 GAYALVALIK---DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQ 236 (470)
T ss_pred CCEEEEEEEC---CEEEEEECCCCCCCCEEEECCCCCEEEEECHHHHHCCCCEEEEECCCCEEEEEEECCCEEEEEE
T ss_conf 7579999987---8089997899976634411179878999430322113606999438953899983696269985
No 24
>pfam00310 GATase_2 Glutamine amidotransferases class-II.
Probab=100.00 E-value=2.8e-45 Score=334.56 Aligned_cols=189 Identities=29% Similarity=0.463 Sum_probs=163.5
Q ss_pred CEEEEEECC------CHHHHHHHHHHHHHHCCCC------CEEEEEEEECC--------EEEEEECCCCHHHHHHH-HCC
Q ss_conf 669999725------0127999999997631587------43489999589--------29999458658998875-210
Q gi|254780943|r 2 CGIVGIVGR------ESVGERLFKALKRLEYRGY------DSSGMATICDG--------KIQCVRAQGKLSELEKE-LNK 60 (608)
Q Consensus 2 CGI~G~~~~------~~~~~~l~~~L~~Le~RG~------Ds~Gia~~~~~--------~i~~~K~~g~i~~l~~~-~~~ 60 (608)
|||||++++ .++.+.++.+|.+|||||| ||+||++.++. ++...|..|.+++.... ...
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~~~~L~~LqHRGq~~~~~~DsaGI~~~~~~~~~~~~~~~l~~~k~~g~~~~~~~~~~~~ 80 (223)
T pfam00310 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERRLFVIRKRGEKSIVAEFYLQD 80 (223)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHCCCCEEEEEEHEEEEHHHHHHCCC
T ss_conf 95489997188885389999999999985466988889998874799667420200023034441010000101011113
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHC--
Q ss_conf 347865446510454388997002675023889999768150689998999978988972476156788876343200--
Q gi|254780943|r 61 KPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNG-- 138 (608)
Q Consensus 61 ~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~-- 138 (608)
.++.|++|||||||+|+|.++.+|||||.++++++||||+|+||.+||++|..+|+.|.|+||||+|+|||+.++..+
T Consensus 81 ~~l~g~~gIGH~RysT~g~~~~~n~qP~~~~~~~l~HNG~i~N~~~lr~~l~~~g~~f~s~sDtE~i~~li~~~~~~~~~ 160 (223)
T pfam00310 81 ERFKSALAIVHTRFSTNGFPSWENAQPFRREGWVLAHNGEINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRS 160 (223)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCEEEEECCEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 46674279899614668998531068542366479840037549999999996599678898599999999999970898
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-CCEEEECCCC-CEEEECCC
Q ss_conf -------10267799999988751222010046872389997--49-9607760896-13661376
Q gi|254780943|r 139 -------SSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR--KG-PPLIIGHGEG-EMFVGSDV 193 (608)
Q Consensus 139 -------~~~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar--~g-sPL~iG~~~~-~~~vaSd~ 193 (608)
.++.++++.++++++|+||+++++. +.++++| .| .||++|+.++ .++||||+
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~l~G~yalv~~~~---~~l~a~RD~~GiRPL~~G~~~d~~~~vASES 223 (223)
T pfam00310 161 PDMDPEERAFYEYLAGLMEPWDGPAALVFTDG---RYVGATLDRNGLRPARYGITEDGLIVVASEA 223 (223)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC---CEEEEEECCCCCCCEEEEEECCCEEEEEECC
T ss_conf 55781388999999998614886389999989---9999998579997639999589989999588
No 25
>KOG0572 consensus
Probab=100.00 E-value=1.3e-44 Score=329.47 Aligned_cols=221 Identities=27% Similarity=0.425 Sum_probs=197.8
Q ss_pred CCEEEEEECCCHH--HHHHHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 9669999725012--7999999997631587434899995-892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRESV--GERLFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~~~--~~~l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
||||||++...+. .+.|..+.-.||||||||+||++.+ .+++...|+.|.+++++..-....+.|++|||||||+|.
T Consensus 1 eCGv~Gi~~a~~~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTa 80 (474)
T KOG0572 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTA 80 (474)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCHHHHHHCHHHHHHCCCCEEEEEEECCCC
T ss_conf 97478998248612374787646777517754554475378686699754512665525777851855402111312666
Q ss_pred CCCCCCCCCCEEE----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH-----HCCHHHHHHHHH
Q ss_conf 8997002675023----8899997681506899989999789889724761567888763432-----001026779999
Q gi|254780943|r 78 GLPNKENSHPHCI----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIK-----NGSSKKETMQKL 148 (608)
Q Consensus 78 G~~~~~NahP~~~----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~-----~~~~~~~ai~~~ 148 (608)
|..-..|+|||.. |.++++|||++.|+.+||++|+..|+.|++++|||+|+|+|++... +..|++.+++.+
T Consensus 81 G~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~ 160 (474)
T KOG0572 81 GSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDV 160 (474)
T ss_pred CCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHH
T ss_conf 53210255655872477227873067323669999999860750146882899999997365766224476389999999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCC-----CCEEEECCCCCCCCC-CCEEEECCCCEEEEEECCCC
Q ss_conf 99887512220100468723899974--9-960776089-----613661376201111-10379827651889730574
Q gi|254780943|r 149 MQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGE-----GEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGL 219 (608)
Q Consensus 149 ~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~-----~~~~vaSd~~al~~~-t~~~~~L~dgei~~i~~~~~ 219 (608)
++.+.|+||+++|.. |++|+.|. | .||++|.-. +.|++|||+++|... .+.++.+.+||+++|+.+++
T Consensus 161 ~~~~~g~Yslv~m~~---d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~ 237 (474)
T KOG0572 161 MELLPGAYSLVFMTA---DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGV 237 (474)
T ss_pred HHHCCCCEEEEEEEC---CEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCEEEEECCCEEEEEECCCEEEEEECCCC
T ss_conf 986677526999871---67899826888866057663389886207997230123404647987407861899855883
Q ss_pred EECCC
Q ss_conf 10033
Q gi|254780943|r 220 TIYDS 224 (608)
Q Consensus 220 ~i~~~ 224 (608)
+..+.
T Consensus 238 ~s~~~ 242 (474)
T KOG0572 238 KSVDI 242 (474)
T ss_pred EEEEE
T ss_conf 04543
No 26
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=100.00 E-value=8e-40 Score=295.99 Aligned_cols=209 Identities=33% Similarity=0.534 Sum_probs=187.5
Q ss_pred CEEEEEECCCHHHHH----HHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 669999725012799----9999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 2 CGIVGIVGRESVGER----LFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 2 CGI~G~~~~~~~~~~----l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
|||||+++..+.... ...++..+||||+|++|+++++++.....|..+.+.++........+.++++|||+||||+
T Consensus 1 CgI~g~~~~~~~~~~~~~~~~~~~~~~~~rg~D~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 97999989987505679999999986635773705089993990799994476302232321003568889998627306
Q ss_pred CCCCCCCCCCEEEC--CEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89970026750238--8999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 78 GLPNKENSHPHCIE--GIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 78 G~~~~~NahP~~~~--~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
|.++..|+|||... +++++|||+|+|+.+||+.|..+++.|.++||||+|++++...++++ ++.+++..+++.++|+
T Consensus 81 g~~~~~n~qPf~~~~~~~~l~hNG~I~n~~~l~~~l~~~~~~~~~~tDsE~i~~l~~~~~~~~-~~~~~i~~~~~~~~G~ 159 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREG-GLFEAVEDALKRLDGP 159 (220)
T ss_pred CCCCCCCCCCCEECCCCEEEEEEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_conf 998634897989189999999914776899999999866973077985999999999972418-8899999999986322
Q ss_pred HHHHHHCCCCCCEEEEEECC---CCEEEECC-CCCEEEECCCCCCCCCC-CEEEECCCCEEE
Q ss_conf 22201004687238999749---96077608-96136613762011111-037982765188
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARKG---PPLIIGHG-EGEMFVGSDVTALTLLT-DKVTYMEDGDWA 212 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~g---sPL~iG~~-~~~~~vaSd~~al~~~t-~~~~~L~dgei~ 212 (608)
|++++++.+ ++.++++|.. .||++|.. ++.++||||+.++.... +.+..+++|+++
T Consensus 160 ~~~i~~~~~-~~~l~~~rd~~G~rpL~~~~~~~~~~~vaSE~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 160 FAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred EEEEEEECC-CCEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHCCCCEEEECCCCCCC
T ss_conf 469999779-9879999689998785999917998999977898864896489998998779
No 27
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=100.00 E-value=6e-39 Score=289.91 Aligned_cols=152 Identities=50% Similarity=0.746 Sum_probs=140.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r 452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN 531 (608)
Q Consensus 452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~ 531 (608)
+++++++++.+.++++|||||++||+|+|+||||+|++|+||+||+++||+|||++++++++|||++++++...++....
T Consensus 2 ~~~~~a~~~~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~ 81 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 68999999847880899948978899999999999998998326768887137399866898679981443788889999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999982798089995653210001346627986887815665899999999999999983877988979864753
Q gi|254780943|r 532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVT 606 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVT 606 (608)
+++++.+|+++++|++++... ...+..+.+|..++.++||++++|+|+|||++|+.+|+|||+||||+|+||
T Consensus 82 ~~~~~~~~~~v~~i~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~i~~Q~la~~~a~~~G~~pD~Pr~l~k~v~ 153 (153)
T cd05009 82 IKEVKARGAKVIVITDDGDAK---DLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT 153 (153)
T ss_pred HHHHHHCCCEEEEEECCCCCC---CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 999996598499997786434---557616878997278899999999999999999980979799999686879
No 28
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180 Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=100.00 E-value=2.1e-37 Score=279.21 Aligned_cols=334 Identities=18% Similarity=0.252 Sum_probs=241.7
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 999999741789999987157476645211110000235--655103520365430799999999862566731430420
Q gi|254780943|r 250 HFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFA--NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSE 327 (608)
Q Consensus 250 hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asE 327 (608)
-|+.|||..||+.||++.+. ++.....+...+.+..-+ .==||+++|.|||=++|.+.+.|+.+.+|.+|.++...+
T Consensus 3 ~hTa~EI~qQP~lWR~~~~i-~q~~~~a~~aFL~PLLa~Pe~~LRIvLTGAGTSAF~G~~l~P~L~~~~G~~V~A~pTTD 81 (374)
T TIGR02815 3 VHTAREIEQQPALWRKLAEI-IQAERPALEAFLEPLLARPEEDLRIVLTGAGTSAFIGDALAPWLAKHLGLRVEAVPTTD 81 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 31278876407999999998-88899998887677760856477589856775477999999999984098158852377
Q ss_pred HHCCCC-CC--CCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCC-----CCCCCCCCC-CCCC
Q ss_conf 100123-34--4555057752678818999999998630--24424651178763100024-----101367420-0110
Q gi|254780943|r 328 FRYRDF-VY--SSKWASLFISQSGETADTLASLRYMRTQ--GLTIGSLVNVLESTIARESD-----FIFPIKAGP-EIGV 396 (608)
Q Consensus 328 f~y~~~-~~--~~~tlvI~iSQSGeT~dti~Al~~ak~~--g~~tiaItN~~~S~la~~aD-----~~i~~~aG~-Ei~V 396 (608)
+.-.+. .+ +..||.|--.+||.|.|-+.|++.|.+. .|+.+-||+|++-.|+|++. +++.|-+|- -+|.
T Consensus 82 LV~nP~qyL~p~~PTLLvSfaRSGNSPESVAAV~LAdQ~l~ecyHL~lTCN~~G~L~r~A~~~~~~~~LLMP~~snD~sF 161 (374)
T TIGR02815 82 LVSNPAQYLDPDRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALARNAVNRSNSFALLMPEESNDRSF 161 (374)
T ss_pred CCCCHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 77881551464554120221125887657999988742156542032223800056798724896389858743478640
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 00788899999999999997762120015776322799987599999999976774467798742036145521366449
Q gi|254780943|r 397 ASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYP 476 (608)
Q Consensus 397 asTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~ 476 (608)
|.|=||||++++-+++- + +.+.+.+..+.+....+.+.+- ...+...+.++. ...+++++||+|..-|
T Consensus 162 AMTSSFscM~la~l~~l---g------p~~~~~~~~~~~A~~a~~~~~~-~~~~~~~~~l~~--~~~~R~~~LGSGgl~G 229 (374)
T TIGR02815 162 AMTSSFSCMMLAALAVL---G------PKTLESKEEERFAKAAECIVKE-EQWDEAAKALAA--APFERIVYLGSGGLQG 229 (374)
T ss_pred HHHHHHHHHHHHHHHHH---C------CCCCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHC--CCCCEEEEECCCHHHH
T ss_conf 02335899999999862---5------5662114699999999888651-114256778641--8763289868851368
Q ss_pred HHHHHHHHHHHHHH--HHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHH-HHHHHHHHHHHCC--CEEEEEECCCCC
Q ss_conf 99999999999742--211442324314463788079871899944801468-8999999998279--808999565321
Q gi|254780943|r 477 LALEGALKIKEISY--LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQ-KTLSNIQEIVTRG--GRVIFITDEEGL 551 (608)
Q Consensus 477 ~A~EgALKlkE~sy--ihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~-k~~s~~~Ei~arg--~~vi~I~~~~~~ 551 (608)
+|.|+|||+.|+|= +.|--=++-=|||||.++||++|.||++.+.|++.. --+-.+.|+|--+ .+||.|+.+.+.
T Consensus 230 lA~EsALK~LELTAGkv~a~~DSslGFRHGPK~~~~~~tlvVv~~S~DpYTRqYDLDLl~ELRrDn~A~~vvA~~a~~~~ 309 (374)
T TIGR02815 230 LARESALKVLELTAGKVMAVYDSSLGFRHGPKSVVDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQALRVVAISAESDE 309 (374)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCEEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf 99887677664333727888866888405885136086279998526898650047999997048962568886437512
Q ss_pred CCCCCCCCCEEECCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0001346627986887---81566589999999999999998387798897
Q gi|254780943|r 552 KRQDFPSIETIVLPSM---GEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 552 ~~~~~~~~~~i~iP~~---~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR 599 (608)
..... +.+.+|+. .+..-.|-|+|-.|+||++-|+.+|+-||.|=
T Consensus 310 ~~~~g---~~~~lp~~~~~~D~~L~FPy~~faQ~~Af~~SlalG~tPDNPc 357 (374)
T TIGR02815 310 LVAEG---DAFLLPDLDEVEDVELAFPYLIFAQTLAFEKSLALGNTPDNPC 357 (374)
T ss_pred HHCCC---CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 21378---7365689887324999989999999999999997158886678
No 29
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=100.00 E-value=7.6e-36 Score=268.31 Aligned_cols=305 Identities=15% Similarity=0.145 Sum_probs=214.5
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC
Q ss_conf 99997417899999871574766452111100002356551035203654307999999998625667314304201001
Q gi|254780943|r 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR 331 (608)
Q Consensus 252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~ 331 (608)
|++.+..=|+-+++.+.-- .+.... ....+.+.+++|+++|||+|..+|.++++++++.+++|+.|.-..++
T Consensus 1 m~~~~~~~~~q~~ea~~~~----~~~~~~-~~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~~y~l--- 72 (328)
T PRK08674 1 MLEDYLNWPKQFEEAWEFA----YRYVLE-GIEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVRDYFL--- 72 (328)
T ss_pred CCHHHHHHHHHHHHHHHHH----HHCCCC-CCHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC---
T ss_conf 9168885799999999778----752644-31101476572999957564899999999984479986798558879---
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23344555057752678818999999998630244246511787631000241013674200110007888999999999
Q gi|254780943|r 332 DFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVI 411 (608)
Q Consensus 332 ~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~l 411 (608)
+..++++||||++||||+|.||+.|++.|+++|+++++||+ |+.|++.|+. +.+|.+.|+++ +..+.+..++
T Consensus 73 P~~v~~~tLVIavSySGnTeETL~a~~~A~~rga~vi~Its--GG~L~~~a~~----~~~~~i~vp~g--~~pRaa~~~~ 144 (328)
T PRK08674 73 PAFVDRKTLVIAVSYSGNTEETLSAVEQAKKRGAKIIAITS--GGKLAEMAKE----KGVPVIKIPGG--YQPRAAFGYL 144 (328)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHH----CCCCEEEECCC--CCHHHHHHHH
T ss_conf 98658885799982899977999999999975995899948--9706789987----79988942698--6469999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99997762120015776322799987599999999976774467798742036145521366449999999999997422
Q gi|254780943|r 412 MAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYL 491 (608)
Q Consensus 412 lal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syi 491 (608)
+...++.. .+.......+..+++.+...++..++..+++|+++.+...+++ |+|..+++|+++++||+|.+|+
T Consensus 145 ~~~ll~~l------~~~~~~~~~l~~~~~~l~~~~~~~~~~ak~LA~~l~~~~piiy-g~~~~~~vA~R~k~qlnEnak~ 217 (328)
T PRK08674 145 FTPLLNIL------EKVSETLGVLSELAERLEENVPTLKNLAKRLASKIYGRIPVIY-GSGLTRPVAYRWKNQINENAKY 217 (328)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999------9877677899999999887532112599999999638986899-6885579999999999887457
Q ss_pred HCCCCCHHHCCCCCHHHHCC------CCEEEEEECCCHHHHHHH---HHHHH-HHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 11442324314463788079------871899944801468899---99999-982798089995653210001346627
Q gi|254780943|r 492 HAEGYAAGELKHGPIALITE------GTFVIAIAPYDRFFQKTL---SNIQE-IVTRGGRVIFITDEEGLKRQDFPSIET 561 (608)
Q Consensus 492 haeg~~agE~kHGP~ali~~------~~~vi~i~~~~~~~~k~~---s~~~E-i~arg~~vi~I~~~~~~~~~~~~~~~~ 561 (608)
||+++..+|++||++...+. ...++++-.+++ .+++. ...+| +..++..+..|..
T Consensus 218 ~A~~~~~pE~nHneI~~~e~~~~~~~~~~~v~l~d~~d-~~r~~~R~~~~~ei~~~~~~~v~~i~~-------------- 282 (328)
T PRK08674 218 PAFYNILPELNHNEIEGYERPQSLLRFVFVVILSDPLD-HPRVKERVEITKEILGASVIPVVEIDP-------------- 282 (328)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEEC--------------
T ss_conf 62325663125650002236655677538999558553-788999999999998436985699958--------------
Q ss_pred EECCCCCHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCC
Q ss_conf 9868878156658999999-999999999838779889
Q gi|254780943|r 562 IVLPSMGEIVSPIVFSLPI-QMIAYCTAVLIGTDVDQP 598 (608)
Q Consensus 562 i~iP~~~~~l~pl~~~ipl-QllAy~~A~~~G~dpD~P 598 (608)
+-+..+..+++.|.+ ++.+||+|+.+|+||..=
T Consensus 283 ----~g~s~L~rl~~li~l~D~~S~yLA~~~gvDP~~v 316 (328)
T PRK08674 283 ----RGNSPLARLLSLILLGDFASVYLAELRGVDPEPV 316 (328)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf ----9988899999999999999999999849897657
No 30
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=100.00 E-value=2e-37 Score=279.35 Aligned_cols=134 Identities=24% Similarity=0.368 Sum_probs=114.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHH--HHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHH-HHHHHHHHHHCC--C
Q ss_conf 455213664499999999999974--22114423243144637880798718999448014688-999999998279--8
Q gi|254780943|r 466 LLYVGRGSSYPLALEGALKIKEIS--YLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQK-TLSNIQEIVTRG--G 540 (608)
Q Consensus 466 ~~~lG~G~~y~~A~EgALKlkE~s--yihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k-~~s~~~Ei~arg--~ 540 (608)
++|||||.+||+|+||||||||+| |+|||||+++||||||+||||+++|||+++++|+...+ ..+.++|+++|+ +
T Consensus 1 vv~LGrG~~y~iA~EgALKlKEis~~yihae~ys~~e~KHGPiALid~~tpvi~~~~~d~~~~~~~~~li~ei~~~~~~~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98980688638899999999998876777512461124657563216997189995388188887657999998226897
Q ss_pred EEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 08999565321000134662798688781566589999999999999998387798897
Q gi|254780943|r 541 RVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 541 ~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR 599 (608)
++++|++.++....+..+......|..++.+.|++++||+||||||+|+.||+|||+|=
T Consensus 81 ~ii~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~iplQLlAy~~Av~rG~dpD~P~ 139 (151)
T cd05010 81 RVIAISPESDAGIEDNSHYYLPGSRDLDDVYLAFPYILYAQLFALFNSIALGLTPDNPC 139 (151)
T ss_pred EEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999458863323567679647998753888899999999999999998699999999
No 31
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=100.00 E-value=1.6e-33 Score=252.20 Aligned_cols=126 Identities=49% Similarity=0.762 Sum_probs=122.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10352036543079999999986256673143042010012334455505775267881899999999863024424651
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV 371 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt 371 (608)
||+|+|||||||+|+.++|+|++++++++.++.|+||.|+.+..++++++|+|||||||.|++++++.+|++|+++++||
T Consensus 1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvI~iS~SG~t~e~i~a~~~a~~~g~~~i~iT 80 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 99999961799999999999999729988998606755447889998599998689798007889999998299489870
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1787631000241013674200110007888999999999999977
Q gi|254780943|r 372 NVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAG 417 (608)
Q Consensus 372 N~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~ 417 (608)
|+++|+|++.+|..+++++|||.++++||+||+|++.|+++|++++
T Consensus 81 ~~~~S~la~~ad~~i~~~~g~E~~~~~Tks~t~~~~~l~lla~~~~ 126 (126)
T cd05008 81 NVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALALA 126 (126)
T ss_pred CCCCCHHHHHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 6999978996898798698776787086999999999999999869
No 32
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426 These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=100.00 E-value=1.9e-32 Score=244.73 Aligned_cols=193 Identities=26% Similarity=0.390 Sum_probs=155.0
Q ss_pred CEEEEEECCC--------HHHHHHHHHHHHHH-CCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 6699997250--------12799999999763-15874348999958929999458658998875210347865446510
Q gi|254780943|r 2 CGIVGIVGRE--------SVGERLFKALKRLE-YRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHT 72 (608)
Q Consensus 2 CGI~G~~~~~--------~~~~~l~~~L~~Le-~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHt 72 (608)
|||+|++... +..+.+..+...|. |||||+.|++. + ++.+.-+.| ++|+.. ..++.++||.
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~~~~~M~~~i~qHRGPD~~G~w~--~-R~VI~~~~~--~~~~~~-----~~~~~~lgh~ 70 (646)
T TIGR01536 1 CGIAGFVDLDDKAVSKKDDEEEAIKRMLDTIAQHRGPDSSGVWI--D-RIVIKSADF--EDLKVA-----DQENAILGHR 70 (646)
T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE--C-CEEEECCCC--HHHHHC-----CCCCCEEEEE
T ss_conf 90788753666342004748999999999987447988576463--3-368833772--023203-----6788168875
Q ss_pred CCCCCCCCCCCC--CCCEEE-----CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 454388997002--675023-----8899997681506899989999789889724761567888763432001026779
Q gi|254780943|r 73 RWATHGLPNKEN--SHPHCI-----EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETM 145 (608)
Q Consensus 73 R~AT~G~~~~~N--ahP~~~-----~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai 145 (608)
|.|- ++..+ +||+.. +..+|||||.|+||.|||++|+.+||.|+|++|||||.|+++.++ .+.++.+.+
T Consensus 71 RLai---iDl~~gG~QP~~~~~~~g~~~~i~~NGEIYN~~eLR~~L~~~G~~F~T~SDtEViL~~Y~~wf-r~~~~~~g~ 146 (646)
T TIGR01536 71 RLAI---IDLSGGGAQPMANEDKTGDTYVIVFNGEIYNHEELREELEAKGYTFETRSDTEVILHAYEEWF-RNLDLEDGI 146 (646)
T ss_pred EEEE---EECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHH-CCCCHHHHH
T ss_conf 2489---875567757752246898668999815431558999999867942616884899999999973-278863789
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECC-CCCEEEECCCCCCCCCCC--EEEECCCC
Q ss_conf 99999887512220100468723899974--9-96077608-961366137620111110--37982765
Q gi|254780943|r 146 QKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHG-EGEMFVGSDVTALTLLTD--KVTYMEDG 209 (608)
Q Consensus 146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~-~~~~~vaSd~~al~~~t~--~~~~L~dg 209 (608)
..++++|+|.||||+.+... +.+|++|. | -||+++.. .+.++||||..||..+.+ ++-...|+
T Consensus 147 e~~~~~L~GmFAFa~~D~~~-~~l~~aRDrfGiKPLYy~~~~~g~~~F~SE~Kal~~~~~~~~~~~~~~~ 215 (646)
T TIGR01536 147 EECVDRLDGMFAFALWDKKK-GELFLARDRFGIKPLYYAYDEGGQLYFASEIKALLAHPREENIKPEPDG 215 (646)
T ss_pred HHHHHHHCCCEEEEEEECCC-CEEEEEECCCCCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCH
T ss_conf 99999738978999997477-7189984788623520134428626873104454227875676545771
No 33
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.97 E-value=5.8e-31 Score=234.34 Aligned_cols=178 Identities=25% Similarity=0.410 Sum_probs=145.0
Q ss_pred CCEEEEEECCCH----HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 966999972501----2799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r 1 MCGIVGIVGRES----VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT 76 (608)
Q Consensus 1 MCGI~G~~~~~~----~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT 76 (608)
||||+|+++.+. ....+..++.+|.|||+|+.|+...+ ++++||+|.|-
T Consensus 1 MCGI~G~~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~---------------------------~~~lgh~RLsI 53 (555)
T PRK09431 1 MCSIFGILDIKTDATELRKKALEMSKLMRHRGPDWSGIYASD---------------------------KAILAHERLSI 53 (555)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC---------------------------CEEEEEEEEEE
T ss_conf 971899965888812569999999975657799998849709---------------------------98999852244
Q ss_pred CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r 77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG 154 (608)
Q Consensus 77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 154 (608)
.+.- ..+||+.+ +++++|+||.|+||.|||++|.. +|.|.|++|||||.++... .|. ..+++|+|
T Consensus 54 iDl~--~g~QP~~~~~~~~~lv~NGEIYN~~eLr~~L~~-~~~f~t~SDtEVil~ly~~---~G~-------~~l~~L~G 120 (555)
T PRK09431 54 VDVN--GGAQPLYNEDKTHILAVNGEIYNHQELRAELGD-KYAFQTGSDCEVILALYQE---KGP-------DFLDDLDG 120 (555)
T ss_pred CCCC--CCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHC-CCCCCCCCHHHHHHHHHHH---HHH-------HHHHHCCC
T ss_conf 3688--899995839999899998886259999999854-8973589989999999999---769-------99987378
Q ss_pred HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCC-CCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCC
Q ss_conf 12220100468723899974--9-960776089-61366137620111110379827651889730574
Q gi|254780943|r 155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGE-GEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGL 219 (608)
Q Consensus 155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~-~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~ 219 (608)
.||||+.+... +++++||. | -||+++..+ +.+++|||..||..+++++..+++|.+.......+
T Consensus 121 mFAFai~D~~~-~~l~laRDr~GiKPLYy~~~~~g~l~FaSEiKaL~~~~~~I~~~pPG~~l~~~~g~~ 188 (555)
T PRK09431 121 MFAFALYDGEK-DAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEF 188 (555)
T ss_pred EEEEEEEECCC-CEEEEEECCCCCCCEEEEEECCCCEEEEECHHHHHHHCCCEEECCCCEEEECCCCCE
T ss_conf 46899982777-779999615787425999817983899730335677617718858950898589978
No 34
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.97 E-value=7.4e-31 Score=233.61 Aligned_cols=178 Identities=29% Similarity=0.410 Sum_probs=143.8
Q ss_pred CCEEEEEECCC---HH-HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 96699997250---12-799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r 1 MCGIVGIVGRE---SV-GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT 76 (608)
Q Consensus 1 MCGI~G~~~~~---~~-~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT 76 (608)
||||+|+++.. +. .+.+-.++..|.|||+|+.|+... +++++||+|.++
T Consensus 1 MCGI~G~~~~~~~~~~~~~~l~~m~~~~~hRGPD~~g~~~~---------------------------~~v~lgh~RLsI 53 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVE---------------------------PGIGLGHRRLSI 53 (628)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEC---------------------------CCEEEEECCEEE
T ss_conf 98279998578888537999999997466879998884865---------------------------998998233001
Q ss_pred CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r 77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG 154 (608)
Q Consensus 77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 154 (608)
-.- + ..+||+.+ +++++|.||.|+||.|||++|...||.|.|+||||||.++... +|. ..+++++|
T Consensus 54 iDl-~-~g~QP~~~~~~~~~ivfNGEIYN~~eLr~~L~~~g~~f~t~sDtEVll~~y~~---~G~-------~~~~~l~G 121 (628)
T TIGR03108 54 IDL-S-GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEE---WGE-------ACVERFRG 121 (628)
T ss_pred ECC-C-CCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HHH-------HHHHHHCE
T ss_conf 079-8-89999775999989999614028999999998569961789819999999999---859-------99988457
Q ss_pred HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCC-CEEEECCCCCCCCCC---------------------------CEE
Q ss_conf 12220100468723899974--9-9607760896-136613762011111---------------------------037
Q gi|254780943|r 155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEG-EMFVGSDVTALTLLT---------------------------DKV 203 (608)
Q Consensus 155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~-~~~vaSd~~al~~~t---------------------------~~~ 203 (608)
.||||+.+... +++++||. | -||++...++ .+++|||..||..+. +.+
T Consensus 122 mFAfai~D~~~-~~l~laRDr~GiKPLYY~~~~~g~~~FaSEikall~~~~~~~~id~~~l~~yl~~~~~~~~~T~f~~I 200 (628)
T TIGR03108 122 MFAFALWDRNQ-ETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGV 200 (628)
T ss_pred EEEEEEECCCC-CEEEEECCCCCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88999983777-78999868666753068981896299810046887378876311599999999737889986401574
Q ss_pred EECCCCEEEEEECCC
Q ss_conf 982765188973057
Q gi|254780943|r 204 TYMEDGDWAIIRNSG 218 (608)
Q Consensus 204 ~~L~dgei~~i~~~~ 218 (608)
..|++|++..++.+.
T Consensus 201 ~~l~PG~~l~~~~~~ 215 (628)
T TIGR03108 201 KKLEPGHTLTLRRGA 215 (628)
T ss_pred EECCCCCEEEEECCC
T ss_conf 131897079998898
No 35
>PTZ00077 asparagine synthetase; Provisional
Probab=99.97 E-value=2e-30 Score=230.58 Aligned_cols=183 Identities=24% Similarity=0.319 Sum_probs=146.1
Q ss_pred CCEEEEEECCC----HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 96699997250----12799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r 1 MCGIVGIVGRE----SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT 76 (608)
Q Consensus 1 MCGI~G~~~~~----~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT 76 (608)
||||+|+++.+ ...+.++++.++|.|||+|+.|+.+..+.. .....+||+|.|-
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~G~~~~~~~~----------------------~~~~~Lgh~RLsI 58 (610)
T PTZ00077 1 MCGILAIFHSSIEKHRLRRKALELSKILRHRGPDWNGIVVEENDD----------------------GTTNVLAHERLAI 58 (610)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC----------------------CCEEEEEECCCCE
T ss_conf 974799965887657789999999863566699998968822688----------------------7535798335325
Q ss_pred CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCC-CEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 88997002675023--8899997681506899989999789-88972476156788876343200102677999999887
Q gi|254780943|r 77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQ-QVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLT 153 (608)
Q Consensus 77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g-~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~ 153 (608)
.+-. .-.||+.+ +++++|+||.|+||.|||++|...| +.|.|++|||||.||...+ |. .++++|+
T Consensus 59 iDl~--~G~QPm~~~~~~~~lv~NGEIYN~~eLR~~L~~~~~~~f~t~SDtEVIl~ly~~~---G~-------~~~~~L~ 126 (610)
T PTZ00077 59 VDVL--SGHQPLYDDAEEVCLTINGEIYNHLELRKLIKEDNIKKLKSCSDCAVIPNLFKIF---GE-------KIPSMLD 126 (610)
T ss_pred ECCC--CCCCCCCCCCCCEEEEEEEEHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH---HH-------HHHHHHC
T ss_conf 0898--8989962699999999962032789999999865987667899379999999999---79-------8998741
Q ss_pred HHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCC-CEEEECCCCCCCCCCCEEEECCCCEEEEEECCC
Q ss_conf 512220100468723899974--9-9607760896-136613762011111037982765188973057
Q gi|254780943|r 154 GSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEG-EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSG 218 (608)
Q Consensus 154 G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~-~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~ 218 (608)
|.||||+.+... ++++++|. | -||++|...+ .+++|||..||...+.++..+++|.+.....+.
T Consensus 127 GmFAFai~D~~~-~~l~laRD~~GiKPLYy~~~~dg~i~FaSE~KaL~~~~~~~~~fpPGh~~~~~~~~ 194 (610)
T PTZ00077 127 GIFAGVISDHKK-NTFFAFRDPIGICPLYIGYAADGSIWFASEFKALKDNCIRYVIFPPGHYYINCKNK 194 (610)
T ss_pred CEEEEEEEECCC-CEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHHHHEEEECCCCEEEEEECCC
T ss_conf 658999997688-97999965777765068985798699952104455544307832896589973588
No 36
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97 E-value=3.1e-30 Score=229.25 Aligned_cols=179 Identities=26% Similarity=0.435 Sum_probs=143.8
Q ss_pred CCEEEEEECCC---HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 96699997250---127999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRE---SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~---~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
||||+|+++.+ .-...+-.++.+|.|||+|+.|+.. .+++++||+|.|--
T Consensus 1 MCGI~G~~~~~~~~~~~~~l~~m~~~l~HRGPD~~g~~~---------------------------~~~~~lgh~RLsIi 53 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHA---------------------------QGPVALGHRRLKII 53 (589)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE---------------------------CCCEEEEEECCEEE
T ss_conf 982799996699877999999999546285978778185---------------------------39989997011142
Q ss_pred CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
+- ++.-.||+.+ +++++|.||.|+||.|||++|..+||.|.|+||||||.++++. +| ...+++++|.
T Consensus 54 Dl-~~~g~QP~~~~~~~~~ivfNGEIYN~~eLr~eL~~~g~~f~t~sDtEvll~~y~~---~G-------~~~l~~l~Gm 122 (589)
T TIGR03104 54 DL-SEASQQPMVDAELGLALVFNGCIYNYRELRAELEGLGYRFFSDGDTEVILKAYHA---WG-------RDCVSRFNGM 122 (589)
T ss_pred CC-CCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HH-------HHHHHHHCCE
T ss_conf 78-8568999666999989999847645999999998679972899809999999999---97-------9999973275
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC---------------------C-------CEEE
Q ss_conf 2220100468723899974--9-960776089613661376201111---------------------1-------0379
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL---------------------T-------DKVT 204 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~---------------------t-------~~~~ 204 (608)
||||+.+... +++++||. | -||++...++.+++|||..||... . +.+.
T Consensus 123 FAfai~D~~~-~~l~laRDr~GiKPLYY~~~~~~~~FaSEikall~~~~~~~~~~~~~l~~yl~~~~~~~~~~T~f~~I~ 201 (589)
T TIGR03104 123 FAFAIWERDS-GRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVR 201 (589)
T ss_pred EEEEEECCCC-CEEEEEECCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 8999980788-889998557778405999609879993353899847676541136789998522566589854035869
Q ss_pred ECCCCEEEEEECCC
Q ss_conf 82765188973057
Q gi|254780943|r 205 YMEDGDWAIIRNSG 218 (608)
Q Consensus 205 ~L~dgei~~i~~~~ 218 (608)
.|++|++..++.++
T Consensus 202 ~l~pG~~l~~~~~~ 215 (589)
T TIGR03104 202 KLPPATWMTVEPDG 215 (589)
T ss_pred EECCCEEEEEECCC
T ss_conf 95894499996799
No 37
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.97 E-value=2.3e-30 Score=230.25 Aligned_cols=180 Identities=28% Similarity=0.460 Sum_probs=149.2
Q ss_pred CEEEEEECCCH---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 66999972501---279999999976315874348999958929999458658998875210347865446510454388
Q gi|254780943|r 2 CGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHG 78 (608)
Q Consensus 2 CGI~G~~~~~~---~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G 78 (608)
|||+|+++.+. ..+.+..+|.+|+|||+|+.|+... +++++||+|+|+.+
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~l~~l~hRGPD~~~~~~~---------------------------~~~~lgh~RLsi~d 53 (220)
T cd00712 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWID---------------------------EGVALGHRRLSIID 53 (220)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE---------------------------CCEEEEEEECCCCC
T ss_conf 969999878997205999999998534669984788985---------------------------99899998743258
Q ss_pred CCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 997002675023--889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 79 LPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 79 ~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
. + ..+||+.+ +++++|+||.|+||.|||++|..+|+.|.|++|||||++++..+ |. +.+++++|+|
T Consensus 54 ~-~-~~~QP~~~~~~~~~l~~NGeIyN~~eL~~~l~~~~~~~~~~sDtEvil~~y~~~---G~-------~~~~~l~G~f 121 (220)
T cd00712 54 L-S-GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEW---GE-------DCLERLNGMF 121 (220)
T ss_pred C-C-CCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC---CC-------EEEEECCCCE
T ss_conf 8-6-689896158999999997999622999999986498466788699999998742---86-------1001246857
Q ss_pred HHHHHCCCCCCEEEEEECC---CCEEEECCCCCEEEECCCCCCCCCCC---------------------------EEEEC
Q ss_conf 2201004687238999749---96077608961366137620111110---------------------------37982
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARKG---PPLIIGHGEGEMFVGSDVTALTLLTD---------------------------KVTYM 206 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~g---sPL~iG~~~~~~~vaSd~~al~~~t~---------------------------~~~~L 206 (608)
|+++.+.. .++++++|.- -||++.+.++.+++|||..+|..+.. .+..|
T Consensus 122 a~~i~D~~-~~~l~l~RD~~G~KPLYY~~~~~~~~FsSeik~l~~~~~~~~~~n~~~l~~~l~~~~~~~~~T~~k~I~~l 200 (220)
T cd00712 122 AFALWDKR-KRRLFLARDRFGIKPLYYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKL 200 (220)
T ss_pred EEEEEECC-CCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCEEEE
T ss_conf 99999878-98199987788860559995099899994679998676988547899999999659989799620090899
Q ss_pred CCCEEEEEECCCCEE
Q ss_conf 765188973057410
Q gi|254780943|r 207 EDGDWAIIRNSGLTI 221 (608)
Q Consensus 207 ~dgei~~i~~~~~~i 221 (608)
++|++..++++++++
T Consensus 201 ~PG~~l~~~~~~~~~ 215 (220)
T cd00712 201 PPGHYLTVDPGGVEI 215 (220)
T ss_pred CCCEEEEEECCCEEE
T ss_conf 996089998993389
No 38
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.97 E-value=3.6e-31 Score=235.78 Aligned_cols=119 Identities=23% Similarity=0.374 Sum_probs=112.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 103520365430799999999862566731430420100123-3445550577526788189999999986302442465
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
+|+|+||||||||++.++|+||+++++|++++.|+||.|+.+ .+++++++|++||||||+||++|++.+|++|+++++|
T Consensus 1 nI~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T~e~i~a~~~ak~~g~~tiai 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999961999999999999986678179998510124369876799969999837989789999999999869959999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 117876310002410136742001100078889999999999
Q gi|254780943|r 371 VNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412 (608)
Q Consensus 371 tN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll 412 (608)
||+++|+|++.+|+++++ |+|++|++||+|++++++|++|
T Consensus 81 T~~~~S~la~~aD~~i~~--g~e~~~~~tk~~~~~~~al~ll 120 (120)
T cd05710 81 TDDEDSPLAKLADYVIVY--GFEIDAVEEKYLLLYMLALRLL 120 (120)
T ss_pred ECCCCCHHHHHCCEEEEC--CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 898989879967988888--9963202089999999999869
No 39
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-28 Score=218.59 Aligned_cols=179 Identities=28% Similarity=0.399 Sum_probs=155.1
Q ss_pred CCEEEEEECCCHH---HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 9669999725012---7999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRESV---GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~~~---~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
||||+|+++..+. .+.+..+...|.|||+|++|++. ..++++||.|.+.-
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~---------------------------~~~~~~gh~rL~i~ 53 (542)
T COG0367 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWI---------------------------SLNALLGHRRLSIV 53 (542)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE---------------------------CCCCEEEEEEEEEE
T ss_conf 985566512544330058999999987356998346573---------------------------37713777788853
Q ss_pred CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
|... -.||+.. +++++|+||.|+||.|||++|..+||.|.|++|||||.++++.. +.+ +++++.|.
T Consensus 54 d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~---g~~-------~~~~l~G~ 121 (542)
T COG0367 54 DLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEW---GED-------CVEHLNGM 121 (542)
T ss_pred CCCC--CCCCCCCCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HHH-------HHHHHCCE
T ss_conf 1455--78887578975899988985127999999975685003566339999999986---577-------88774560
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC-----CCEEEECCCCEEEEEECCCC
Q ss_conf 2220100468723899974--9-960776089613661376201111-----10379827651889730574
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL-----TDKVTYMEDGDWAIIRNSGL 219 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~-----t~~~~~L~dgei~~i~~~~~ 219 (608)
|||++.+.+. +++|++|+ | .||+++..++..+||||..|+..+ .+.+..|++|.+..++.++.
T Consensus 122 fAfai~d~~~-~~l~laRD~~GikPLyy~~~~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~ 192 (542)
T COG0367 122 FAFAIYDETR-QKLFLARDPFGVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGL 192 (542)
T ss_pred EEEEEEECCC-CEEEEEECCCCCCCCEEEECCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCEEEECCCCC
T ss_conf 6999998899-8899984588853217995288258874426675077543357707837997688648984
No 40
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=99.94 E-value=2.8e-26 Score=201.81 Aligned_cols=128 Identities=38% Similarity=0.475 Sum_probs=120.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 356551035203654307999999998625667314304201001-2334455505775267881899999999863024
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
+.+.+||+|+|||+||++|+.++++|+++...++.+..++||.+. ...++++++||++||||+|.|++++++.+|++|+
T Consensus 2 l~~a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~ 81 (131)
T pfam01380 2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRDLLEAAKLLKARGA 81 (131)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 76789899999326999999999999986898778636588660675679999999995489865768987899998499
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4246511787631000241013674200110007888999999999999
Q gi|254780943|r 366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAI 414 (608)
Q Consensus 366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal 414 (608)
++++|||.++|+|++.+|.++++.+|+|.++++||+|++|++++.++++
T Consensus 82 ~~i~iT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~~~~l~~l~~l~~ 130 (131)
T pfam01380 82 KIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQLALLDALAI 130 (131)
T ss_pred EEEEEECCCCCHHHHHCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 6999989999978996899898799875654568999999999999986
No 41
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.89 E-value=1.1e-22 Score=176.75 Aligned_cols=169 Identities=18% Similarity=0.217 Sum_probs=120.5
Q ss_pred CCEEEEEECCCHH----HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9669999725012----799999999763158743489999589299994586589988752103478654465104543
Q gi|254780943|r 1 MCGIVGIVGRESV----GERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWAT 76 (608)
Q Consensus 1 MCGI~G~~~~~~~----~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT 76 (608)
||||+|+++.+.. ...+-.++..|+|||||+.|+...+.. ...+.++|+|.+.
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~~~~~l~hRGPD~~g~~~~~~~-----------------------~~~~~~~~~~L~i 57 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVT-----------------------NWTLLFTSSVLSL 57 (181)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCC-----------------------CCEEEEEEEEEEC
T ss_conf 97589999178875124999999985574779973588974146-----------------------8605677788851
Q ss_pred CCCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 88997002675023--8899997681506899989999789889724761567888763432001026779999998875
Q gi|254780943|r 77 HGLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTG 154 (608)
Q Consensus 77 ~G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 154 (608)
.|.. .-.||+.+ ++..+++||.|+||.+||. +++||||+.+++.....+ ...+..++++|+|
T Consensus 58 ~~~~--~~~QP~~~~~~~~~l~fNGEIYN~~~l~~----------~~sDtevl~~~~~~~~~~----~~~i~~~l~~l~G 121 (181)
T cd03766 58 RGDH--VTRQPLVDQSTGNVLQWNGELYNIDGVED----------EENDTEVIFELLANCSSE----SQDILDVLSSIEG 121 (181)
T ss_pred CCCC--CCCCCCCCCCCCEEEEEEEEEECCCCCCC----------CCCHHHHHHHHHHHHHHH----HCCHHHHHHHCCC
T ss_conf 4887--78989792999999999478853664556----------798499999999985330----1018899985162
Q ss_pred HHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCC-EEEECCCCCCCCCCCEEEECCCCE
Q ss_conf 12220100468723899974--9-96077608961-366137620111110379827651
Q gi|254780943|r 155 SYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGE-MFVGSDVTALTLLTDKVTYMEDGD 210 (608)
Q Consensus 155 ~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~-~~vaSd~~al~~~t~~~~~L~dge 210 (608)
.|||++++... +++|++|. | -||++++.++. .|++|+..++... ..+..++.+-
T Consensus 122 mFAfvi~D~~~-~~l~l~RD~~G~KPLyy~~~~~~~~f~~ssv~~~~~~-~~~~e~~~~~ 179 (181)
T cd03766 122 PFAFIYYDASE-NKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSSG-SGFQEVLAGG 179 (181)
T ss_pred EEEEEEEECCC-CEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCC-CCEEECCCCC
T ss_conf 28999998889-9999998888875648999699989999972377788-9748878986
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.88 E-value=2.7e-21 Score=167.13 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=148.3
Q ss_pred CCEEEEEECCCH-HHHHHHHHHHHH--------HCCC---CCEEEEEEEE--CCEEEEEECCCCH-HHHHHHHCCCCCCC
Q ss_conf 966999972501-279999999976--------3158---7434899995--8929999458658-99887521034786
Q gi|254780943|r 1 MCGIVGIVGRES-VGERLFKALKRL--------EYRG---YDSSGMATIC--DGKIQCVRAQGKL-SELEKELNKKPLKG 65 (608)
Q Consensus 1 MCGI~G~~~~~~-~~~~l~~~L~~L--------e~RG---~Ds~Gia~~~--~~~i~~~K~~g~i-~~l~~~~~~~~~~~ 65 (608)
||=++||.+..- ..+.++..-..| +++| .|.+||+.++ +....++|+.-.+ ++........++.+
T Consensus 1 MCRll~y~g~~~~l~~~l~~~~~sl~~qs~~~~~~~~~~n~DGwGi~wy~~~~~~p~~~r~~~pa~sd~~~~~l~~~i~s 80 (257)
T cd01908 1 MCRLLGYSGAPIPLEPLLIRPSHSLLVQSGGPREMKGTVHADGWGIGWYEGKGGRPFRYRSPLPAWSDINLESLARPIKS 80 (257)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf 97025013777547642655773177751684214799889974698883799548886898766588567876532477
Q ss_pred CEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHHCCH----
Q ss_conf 544651045438899700267502388999976815068999899997898-897247615678887634320010----
Q gi|254780943|r 66 NIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQ-VFLTETDTEVIACLLEKFIKNGSS---- 140 (608)
Q Consensus 66 ~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~-~f~s~tDsEvi~~li~~~~~~~~~---- 140 (608)
...|+|+|+||.|.++..|+|||..++++.+|||.|.++.++|..+..... ....+||||.++.++-..+.+...
T Consensus 81 ~~~laHvR~AT~G~v~~~N~HPF~~~~~~F~HNG~i~~~~~~~~~~~~~~~~~~~G~TDSE~~F~~ll~~l~~~~~~~~~ 160 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPA 160 (257)
T ss_pred CEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 54999986177897763567872665799996773478788889886335433467886999999999999861887668
Q ss_pred -HHHHHHHHHHHHHHH---HHHHHHCCCCCCEEEEEECCC--CEEEEC------------------CCCCEEEECCCCCC
Q ss_conf -267799999988751---222010046872389997499--607760------------------89613661376201
Q gi|254780943|r 141 -KKETMQKLMQCLTGS---YSIAVIFEDDPHSIIVARKGP--PLIIGH------------------GEGEMFVGSDVTAL 196 (608)
Q Consensus 141 -~~~ai~~~~~~l~G~---ya~~il~~~~p~~i~~ar~gs--PL~iG~------------------~~~~~~vaSd~~al 196 (608)
+.+++.+++..+... .++-++..+ .+.+++.|..+ .|+.-. .++.++||||+.--
T Consensus 161 ~~~~~l~~~~~~l~~~~~~~~lN~~~sd-G~~l~a~r~~~~~sLy~~~~~~~~~~~~~~~~~~~~~~~~~vvVASePL~~ 239 (257)
T cd01908 161 ELLDAILQTLRELAALAPPGRLNLLLSD-GEYLIATRYASAPSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTD 239 (257)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 8999999999999842878269999987-998999997799954788655876544411011336889999999389999
Q ss_pred CCCCCEEEECCCCEEEEEECC
Q ss_conf 111103798276518897305
Q gi|254780943|r 197 TLLTDKVTYMEDGDWAIIRNS 217 (608)
Q Consensus 197 ~~~t~~~~~L~dgei~~i~~~ 217 (608)
.. .-..+++|++++++.+
T Consensus 240 ~~---~W~~v~~~~llvv~~g 257 (257)
T cd01908 240 DE---GWTEVPPGELVVVSEG 257 (257)
T ss_pred CC---CCEECCCCEEEEEECC
T ss_conf 97---9579089839999488
No 43
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.86 E-value=3.2e-20 Score=159.70 Aligned_cols=170 Identities=22% Similarity=0.288 Sum_probs=129.0
Q ss_pred EEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEE
Q ss_conf 9945865899887---5210347865446510454388997002675023889999768150689998999978988972
Q gi|254780943|r 44 CVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT 120 (608)
Q Consensus 44 ~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s 120 (608)
|+|+.|...++.+ .+....++|.++|+|+|++|+-.|++.-|||+... ||||.|.+|.-.|+.+..+|+.|.|
T Consensus 178 VYKG~~~p~~V~~~y~dl~~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr~l----vHNGEInT~~gN~nwm~ar~~~~~s 253 (371)
T COG0067 178 VYKGVGLPEDVAEFYLDLDDERYKSAIALVHTRFSTNTFPSWPLAHPFRLL----VHNGEINTYGGNRNWLEARGYKFES 253 (371)
T ss_pred EEECCCCHHHHHHHHHHCCCHHHCEEEEEEEECCCCCCCCCCCCCCCCEEE----EECCEECCCCCHHHHHHHHHCCCCC
T ss_conf 993056899997777652442212468999800678889988767866533----3355021541179999985240104
Q ss_pred CCCHHHHHHHHHHHHHHCC---HHHHHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEECCC---CEEEECCCC
Q ss_conf 4761567888763432001---026779999---------9988751222010046872389997499---607760896
Q gi|254780943|r 121 ETDTEVIACLLEKFIKNGS---SKKETMQKL---------MQCLTGSYSIAVIFEDDPHSIIVARKGP---PLIIGHGEG 185 (608)
Q Consensus 121 ~tDsEvi~~li~~~~~~~~---~~~~ai~~~---------~~~l~G~ya~~il~~~~p~~i~~ar~gs---PL~iG~~~~ 185 (608)
.+|||++++|+......+. ++..++... ...+.|.+|...-..-.|+.....+.-| |...|-.+.
T Consensus 254 ~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~~~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~ 333 (371)
T COG0067 254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADI 333 (371)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEECCCCCCCCEEEEEEHHHHCCCCCCCCCCE
T ss_conf 65288899987876024774111467898877518571457771696540337779844079886064477875077621
Q ss_pred CEEEECCCCCCCCCC----CEEEECCCCEEEEEECC
Q ss_conf 136613762011111----03798276518897305
Q gi|254780943|r 186 EMFVGSDVTALTLLT----DKVTYMEDGDWAIIRNS 217 (608)
Q Consensus 186 ~~~vaSd~~al~~~t----~~~~~L~dgei~~i~~~ 217 (608)
.++.+|+..|+++.. .+|+.-+||+++.-+.-
T Consensus 334 ~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~ 369 (371)
T COG0067 334 VFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEA 369 (371)
T ss_pred EEEECCEEEEEECCCCCCCCEEEEECCCEEEEEEEC
T ss_conf 687420554540237987542899549989998722
No 44
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.85 E-value=1e-19 Score=156.08 Aligned_cols=216 Identities=17% Similarity=0.197 Sum_probs=153.8
Q ss_pred CCEEEEEECCCHH-HHHHHH---HHHH-----HHCC----CCCEEEEEEEECC---EEEEEECCCCHH---HHHHHHCCC
Q ss_conf 9669999725012-799999---9997-----6315----8743489999589---299994586589---988752103
Q gi|254780943|r 1 MCGIVGIVGRESV-GERLFK---ALKR-----LEYR----GYDSSGMATICDG---KIQCVRAQGKLS---ELEKELNKK 61 (608)
Q Consensus 1 MCGI~G~~~~~~~-~~~l~~---~L~~-----Le~R----G~Ds~Gia~~~~~---~i~~~K~~g~i~---~l~~~~~~~ 61 (608)
||=.+||.|..-. .+.|++ .|.. .+-| --|.+|++.++++ .-.++|+...+= ++.+. ..
T Consensus 1 MCR~l~y~G~p~~l~~ll~~p~hSL~~QS~~~~~~~~~~~N~DGfGvgWy~~~~~~~P~~yr~~~PaW~D~nl~~l--a~ 78 (251)
T TIGR03442 1 MCRHLAYLGAPVSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASL--AR 78 (251)
T ss_pred CCCCCEECCCCEEHHHHHCCCCCHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHH--HH
T ss_conf 9601165169668888552886138886627555458855688617988768888887045068635468119999--86
Q ss_pred CCCCCEEEEEECCCCCC-CCCCCCCCCEEECCEEEEECCEECCHHH-HHHHHHHC----CC-EEEECCCHHHHHHHHHHH
Q ss_conf 47865446510454388-9970026750238899997681506899-98999978----98-897247615678887634
Q gi|254780943|r 62 PLKGNIGIAHTRWATHG-LPNKENSHPHCIEGIAVTHNGIIENFSR-LKKEHFSS----QQ-VFLTETDTEVIACLLEKF 134 (608)
Q Consensus 62 ~~~~~~gIgHtR~AT~G-~~~~~NahP~~~~~~~vvHNG~I~N~~e-lr~~l~~~----g~-~f~s~tDsEvi~~li~~~ 134 (608)
...+.+.++|+|+||.| .++..|+|||..+++...|||.|.|+.+ +|+.|... .+ ....+||||.+..|+-..
T Consensus 79 ~v~S~~~lAHVR~AT~G~~v~~~NcHPF~~g~~lF~HNG~I~~f~~~l~r~l~~~l~~~~~~~i~G~TDSE~~Fal~l~~ 158 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNR 158 (251)
T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41366589886505688765523478833577899947723774588899998537987874414887589999999998
Q ss_pred HHHCC--HHHHHHHHHHHHHHHH-----HHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECC
Q ss_conf 32001--0267799999988751-----2220100468723899974996077608961366137620111110379827
Q gi|254780943|r 135 IKNGS--SKKETMQKLMQCLTGS-----YSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYME 207 (608)
Q Consensus 135 ~~~~~--~~~~ai~~~~~~l~G~-----ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~ 207 (608)
+.+.. .+.+++..++..++-. ..+-++..+ .+.+++.|.++.|++-..+++++||||+.- + -..-..++
T Consensus 159 l~~~~~~al~~ai~~~~~~~~~~~~~~~~~lN~~ltD-G~~l~AtR~~~sLy~~~~~~~vvVASEPld--~-~~~W~~vP 234 (251)
T TIGR03442 159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD-GSRLVATRWADTLYWLKDPEGVIVASEPYD--D-DPGWQDVP 234 (251)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEECCCEEEEECCCEEEEEECCCC--C-CCCCEECC
T ss_conf 8764863799999999999998642867068999964-999999994586389936997999978889--9-97964989
Q ss_pred CCEEEEEECCCCEEC
Q ss_conf 651889730574100
Q gi|254780943|r 208 DGDWAIIRNSGLTIY 222 (608)
Q Consensus 208 dgei~~i~~~~~~i~ 222 (608)
++.++.++.+++.+.
T Consensus 235 ~~s~l~v~~~~v~~~ 249 (251)
T TIGR03442 235 DRHLLSVSEDDVTIT 249 (251)
T ss_pred CCCEEEEECCCEEEE
T ss_conf 996899978927997
No 45
>KOG0571 consensus
Probab=99.83 E-value=2.5e-20 Score=160.46 Aligned_cols=180 Identities=27% Similarity=0.400 Sum_probs=144.4
Q ss_pred CCEEEEEECCCH---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 966999972501---27999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~~---~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
||||+++.+..+ ..+..++.-+++.|||+|.+|.+...++ -+||-|.|-.
T Consensus 1 MCGI~Av~~~~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~---------------------------~l~heRLAIv 53 (543)
T KOG0571 1 MCGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRNDN---------------------------ILGHERLAIV 53 (543)
T ss_pred CCCEEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCHHHEECCC---------------------------CCCCCCEEEE
T ss_conf 9841213156404335744556777635899796522200455---------------------------4343210576
Q ss_pred CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
+. .--+||... +.+.+.+||.|+|+++||+.+. .+.|++.+|.|||.||.++. + ...+...|+|.
T Consensus 54 dp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~--~~~~~T~sDcEvIi~lY~kh----g-----~~~~~~~LDG~ 120 (543)
T KOG0571 54 DP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCK--DFEFQTGSDCEVIIHLYEKH----G-----GEQAICMLDGV 120 (543)
T ss_pred CC--CCCCCCCCCCCCCEEEEECCEECCHHHHHHHHH--HCCCCCCCCCEEEEEHHHHC----C-----CHHHHHHHHHH
T ss_conf 68--867764213787679987764454899998765--14423478841661157644----7-----24667775401
Q ss_pred HHHHHHCCCCCCEEEEEECC---CCEEEECCCC-CEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEE
Q ss_conf 22201004687238999749---9607760896-136613762011111037982765188973057410
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARKG---PPLIIGHGEG-EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTI 221 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~g---sPL~iG~~~~-~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i 221 (608)
|||++.+..+ ++++++|.+ .||++|.+.+ ..++|||...+.+.++++.+-.+|.+...+-++..-
T Consensus 121 Fafvl~d~~~-~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r 189 (543)
T KOG0571 121 FAFVLLDTKD-DKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTR 189 (543)
T ss_pred EEEEEECCCC-CEEEECCCCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHEECCCCCEEECCCCCCCC
T ss_conf 3788952788-74783368767413478861788578741020233331000455884141234466467
No 46
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.78 E-value=2e-18 Score=147.22 Aligned_cols=122 Identities=21% Similarity=0.158 Sum_probs=101.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 1035203654307999999998625667314304201001-233445550577526788189999999986302442465
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
||+|.|+|+|...|....+-|.+ .|+++....+++..+. -..+.+++++|++||||||.|++++++.+|++|+++++|
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r-~G~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e~~~~~~~ak~~g~~vI~i 80 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHH-CCCCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 49999426799999999999995-79945754731555411347789999999979999867999999998637858999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11787631000241013674200---110007888999999999999
Q gi|254780943|r 371 VNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAI 414 (608)
Q Consensus 371 tN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal 414 (608)
||+++|+|++.||+++.+.+++| .++++|.+.++|+.++=.|++
T Consensus 81 T~~~~S~La~~ad~~l~~~~~eE~~~~~~~at~Sr~aqL~i~D~L~i 127 (128)
T cd05014 81 TGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALAV 127 (128)
T ss_pred ECCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87999967996898997799865777787478999999999999985
No 47
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.66 E-value=2.6e-15 Score=125.52 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=95.8
Q ss_pred CEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 54465104543889970026750238899997681506899989999789889724761567888763432001026779
Q gi|254780943|r 66 NIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETM 145 (608)
Q Consensus 66 ~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai 145 (608)
.+++.|.|-+ -...+..-.||+.+++.++|.||.|+||.|||++|...|++|.|.+||||+.++++. +|.
T Consensus 26 ~~aL~h~rLs-Iidl~~~~~qp~~~~~~tlv~nGEIYNy~eLR~eL~~~g~~f~t~sDtEVlL~~~~~---wG~------ 95 (199)
T cd01909 26 GEALPNGAGT-IVHAGSVDVQVARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LGL------ 95 (199)
T ss_pred CEEECCCCEE-EEECCCCCCCCEECCCEEEEEEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHH---HHH------
T ss_conf 5060235189-986687566861637689999577417999999998669575458726999999999---829------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC
Q ss_conf 99999887512220100468723899974--9-960776089613661376201111
Q gi|254780943|r 146 QKLMQCLTGSYSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL 199 (608)
Q Consensus 146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~ 199 (608)
..+++++|+|||++.++ .++++++|. | .||++-.+ +..++|||..++...
T Consensus 96 -~~l~rl~GmFAFai~D~--~~~L~LaRDr~G~KPLY~~~~-g~~~~asElK~l~a~ 148 (199)
T cd01909 96 -HAFRLAEGDFCFFIEDG--NGRLTLATDHAGSVPVYLVQA-GEVWATTELKLLAAH 148 (199)
T ss_pred -HHHHHHCCCEEEEEECC--CCCEEEEECCCCCCCEEEEEC-CCEEEECCCHHHHCC
T ss_conf -99987266789999859--996999976899843589848-979986000123207
No 48
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.64 E-value=1.4e-14 Score=120.36 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=100.7
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHC
Q ss_conf 99997417899999871574766452111100002356551035203654307999999998625667314304-20100
Q gi|254780943|r 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVS-SEFRY 330 (608)
Q Consensus 252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~a-sEf~y 330 (608)
..|-+.+.-+.++++++.. +...+.... ..+.+.++|++.|.|.|+..|....+-|.+ .|+++..... .....
T Consensus 99 ~~~~~~~~~~~l~~t~~~~----~~~~l~~av-~~i~~A~~I~i~G~G~S~~vA~~~~~kl~r-ig~~~~~~~d~~~~~~ 172 (282)
T PRK11557 99 GEKLIKENTAAMYATLDVN----SEEKLHECV-TMLRSARRIILTGIGASGLVAQNFAWKLMK-IGINAVAERDMHALLA 172 (282)
T ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HCCCEEECCCHHHHHH
T ss_conf 9999999999999998336----899999999-999648958999704369999999999998-0996374088689999
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12334455505775267881899999999863024424651178763100024101367420011000788899999999
Q gi|254780943|r 331 RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLV 410 (608)
Q Consensus 331 ~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ 410 (608)
.-..+++++++|+||.||+|.+++++++.||++|+++++||+.++|||++.||+++++.. +|.-. -.-++++.+..|+
T Consensus 173 ~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD~~L~~~~-~e~~~-~~~~~~s~~a~l~ 250 (282)
T PRK11557 173 TVQALSPDDLLLAISYSGERRELNLAADEALRVGGKVLAITGFTPNALQQRASHCLYTIA-EEQAT-RSAAISSTHAQGM 250 (282)
T ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEECC-CCCCC-CCCCHHHHHHHHH
T ss_conf 998189999899985999978999999999987993999729899815886999998478-53101-3434399999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780943|r 411 IM 412 (608)
Q Consensus 411 ll 412 (608)
++
T Consensus 251 ii 252 (282)
T PRK11557 251 LT 252 (282)
T ss_pred HH
T ss_conf 99
No 49
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.60 E-value=2.1e-14 Score=119.17 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 23565510352036543079999999986256673143042010---012334455505775267881899999999863
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQSGETADTLASLRYMRT 362 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~ 362 (608)
.+.+.++|++.|.|.|...|..+.+-|-+ .|+++... .+.. ..-....+++++|+||.||+|.+++++++.||+
T Consensus 124 li~~A~~I~i~G~G~S~~vA~~~~~kl~r-~g~~~~~~--~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e~i~~~~~Ak~ 200 (284)
T PRK11302 124 LLTQAKKISFFGLGASAAVAHDAQNKFFR-FNVPVVYF--DDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARE 200 (284)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHH-CCCCEEEC--CCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99718958999648509999999999984-39814642--8789999999719998889997379998799999999998
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0244246511787631000241013674200--110007888999999999999977
Q gi|254780943|r 363 QGLTIGSLVNVLESTIARESDFIFPIKAGPE--IGVASTKAFTCQLLVLVIMAIYAG 417 (608)
Q Consensus 363 ~g~~tiaItN~~~S~la~~aD~~i~~~aG~E--i~VasTKsftaql~~l~llal~l~ 417 (608)
+|+++++||+ ++|||++.||+++.+..... ..- +.-+..+|+.++=+|...+.
T Consensus 201 ~ga~vIaIT~-~~SpLa~~AD~~L~~~~~e~~~~~~-~~~sriaql~viD~L~~~~~ 255 (284)
T PRK11302 201 NGATVIGITA-AGSPLAREATLALTLDVPEDTDIYM-PMVSRIAQLTVIDVLATGFT 255 (284)
T ss_pred CCCCEEEECC-CCCHHHHHCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 7995899779-9981488689889846776540110-46999999999999999999
No 50
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.59 E-value=2.4e-14 Score=118.78 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=93.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 356551035203654307999999998625--667314304201001233445550577526788189999999986302
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG 364 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g 364 (608)
+.+.++|++.|+|.|. ++++++..++. |.++.. -.|.. .|.+.+++++|++|.||||.+++++++.||++|
T Consensus 30 I~~a~~I~~~G~G~Sg---~va~~~a~rl~~lG~~~~~--~~d~~--~~~i~~~Dv~I~iS~SG~T~~~~~~~~~aK~~g 102 (179)
T cd05005 30 ILNAKRIFVYGAGRSG---LVAKAFAMRLMHLGLNVYV--VGETT--TPAIGPGDLLIAISGSGETSSVVNAAEKAKKAG 102 (179)
T ss_pred HHCCCCEEEEEECCHH---HHHHHHHHHHHHCCCCEEE--ECCCC--CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9749948999856258---7799999999735980124--35655--577999999999819999568999999999879
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCHHH----HHH-HHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 44246511787631000241013674200----1100078----889-999999999999776212001577
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPE----IGVASTK----AFT-CQLLVLVIMAIYAGKVRGYINEEQ 427 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E----i~VasTK----sft-aql~~l~llal~l~~~~g~i~~~~ 427 (608)
+++++||++++|+|++.||.++++.+..| -..+++. +|. ++++.+=.+++.+.+.+| ++.++
T Consensus 103 a~iI~IT~~~~S~la~~aD~~l~ip~~~~~~~~~~~~s~~pm~s~~e~~~l~~~Dal~~~lm~~~~-~~~~~ 173 (179)
T cd05005 103 AKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELG-VSEEE 173 (179)
T ss_pred CEEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 919999798999789958999981874313888898765757759999999999999999999809-89999
No 51
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.57 E-value=2.7e-14 Score=118.42 Aligned_cols=129 Identities=24% Similarity=0.260 Sum_probs=89.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 2356551035203654307999999998625--66731430420100123344555057752678818999999998630
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQ 363 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~ 363 (608)
.+.+.++|++.|+|.|.+.| +++..++. |.++... .|- ..+.+.+++++|++|.||||.+++++++.||++
T Consensus 26 ~I~~a~~I~v~G~G~Sg~ia---~~~a~rL~~~G~~~~~~--~d~--~~~~i~~~Dv~I~iS~SGeT~e~~~~~~~aK~~ 98 (179)
T TIGR03127 26 KIIKAKRIFVAGAGRSGLVG---KAFAMRLMHLGFNVYVV--GET--TTPSIKKGDLLIAISGSGETESLVTVAKKAKEI 98 (179)
T ss_pred HHHCCCCEEEEEECCHHHHH---HHHHHHHHHCCCEEEEE--CCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99739909999955439999---99999998519757997--644--446699999999981999968999999999987
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCC----CCC---CCCHHH-HHHH-HHHHHHHHHHHHHHHCC
Q ss_conf 2442465117876310002410136742----001---100078-8899-99999999999776212
Q gi|254780943|r 364 GLTIGSLVNVLESTIARESDFIFPIKAG----PEI---GVASTK-AFTC-QLLVLVIMAIYAGKVRG 421 (608)
Q Consensus 364 g~~tiaItN~~~S~la~~aD~~i~~~aG----~Ei---~VasTK-sfta-ql~~l~llal~l~~~~g 421 (608)
|+++++||++++|+|++.||.++.+.+- +|- +++-|- +|.. .++.+=.+++.+.+.++
T Consensus 99 ga~ii~IT~~~~S~Lak~aD~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~Dal~~~l~~~~~ 165 (179)
T TIGR03127 99 GATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKG 165 (179)
T ss_pred CCEEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9929999798989779949999990686545777885666866749999999999999999999819
No 52
>LOAD_sis consensus
Probab=99.57 E-value=1.1e-14 Score=121.12 Aligned_cols=87 Identities=28% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 51035203654307999999998625667314304201001233445550577526788189999999986302442465
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
+.+++.+|||||+|+++++++++....+++.+..+++|.++.+...+++++|++||||+|+|++.+++.+|++|++++++
T Consensus 4 rii~ig~ggSs~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~SG~t~e~~~a~~~~~~~~~~~i~i 83 (90)
T LOAD_sis 4 RVVFIGAGGSALGAQLLAKALAERGAVIFVSVNVADEFLARVLALLDDDLLVIISKSGGTTETLLAALLAKKRGAKTIAI 83 (90)
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 29999970199999999999999974997699745311066887897888999878988899999999999889939999
Q ss_pred ECCCCCC
Q ss_conf 1178763
Q gi|254780943|r 371 VNVLEST 377 (608)
Q Consensus 371 tN~~~S~ 377 (608)
||+++|+
T Consensus 84 t~~~~s~ 90 (90)
T LOAD_sis 84 TNVAGST 90 (90)
T ss_pred ECCCCCC
T ss_conf 6888889
No 53
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.56 E-value=2e-13 Score=112.42 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 07899999974178999998715747664521111000023565510352036543079999999986256673143042
Q gi|254780943|r 247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS 326 (608)
Q Consensus 247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~as 326 (608)
+......|=+.+.-+.++++.+.. +...+.. ....+.+.++|+|.|-|+|.-.|...+|.|.+ .|+++.+....
T Consensus 92 ~~~~~~~~~~~~~~~~l~~t~~~l----~~~~l~~-av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~-ig~~~~~~~d~ 165 (281)
T COG1737 92 GPESILEKLLAANIAALERTLNLL----DEEALER-AVELLAKARRIYFFGLGSSGLVASDLAYKLMR-IGLNVVALSDT 165 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf 546899999999999999998536----8999999-99999706957999648359999999999998-19966996684
Q ss_pred HH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 01-001233445550577526788189999999986302442465117876310002410136742001100-0788899
Q gi|254780943|r 327 EF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA-STKAFTC 404 (608)
Q Consensus 327 Ef-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va-sTKsfta 404 (608)
.+ ...-..+.+++++|+||.||+|.+++++++.||++|+++|+||+..+|||++.||++++.....+-..- ++=+..+
T Consensus 166 ~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a 245 (281)
T COG1737 166 HGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIA 245 (281)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 17999998389998899984899968999999999977992999839999936665477887126763222556078899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999997762
Q gi|254780943|r 405 QLLVLVIMAIYAGKV 419 (608)
Q Consensus 405 ql~~l~llal~l~~~ 419 (608)
++.++-+|...+...
T Consensus 246 ~l~l~d~L~~~~~~~ 260 (281)
T COG1737 246 QLALIDALITAVAQR 260 (281)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 54
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=4.1e-14 Score=117.17 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=102.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 5655103520365430799999999862--5667314304201001-233445550577526788189999999986302
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKFWFERL--ARLKVEIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMRTQG 364 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~--~~i~v~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g 364 (608)
..-.+|+++|+|.| |++|+-+--++ +|.|+.+.-|.|-.+. -+.+.++++||+||-||||.+++.++..+|+.|
T Consensus 37 ~~~gkv~V~G~GkS---G~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g 113 (202)
T COG0794 37 ECKGKVFVTGVGKS---GLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLG 113 (202)
T ss_pred HCCCCEEEECCCHH---HHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 24884899868726---899999999997359955996673010377567898889999808971779999999999759
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44246511787631000241013674200---11000788899999999999997762120
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGY 422 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~ 422 (608)
+++++||.+++|+|++.+|.++.+...+| .+.+.|-+-+.|+..-..++..+-+.++.
T Consensus 114 ~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~~~f 174 (202)
T COG0794 114 AKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARGF 174 (202)
T ss_pred CCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 9489995899986787468699736744468676765203678876330888999998378
No 55
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.56 E-value=8e-14 Score=115.16 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=95.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 2356551035203654307999999998625667314304201-001233445550577526788189999999986302
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQG 364 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g 364 (608)
.+.+.++|++.|.|.|+..|....+-|-+ .|+++.+..-..+ ...-..+.+++++|+||.||+|.+++++++.||++|
T Consensus 137 li~~A~~I~i~G~G~S~~vA~~~~~kl~r-lG~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e~i~~~~~Ak~~G 215 (293)
T PRK11337 137 FFYQARQRDLYGAGGSNAICADVQHKFLR-IGVRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSDVKAAVELAKQNG 215 (293)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99827970899857269999999999998-59804764777899999971899988999818999889999999999879
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44246511787631000241013674200--110007888999999999999977
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPE--IGVASTKAFTCQLLVLVIMAIYAG 417 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E--i~VasTKsftaql~~l~llal~l~ 417 (608)
+++|+||+...|||++.||+++.+..-.+ .+. ++=+..+|+.++=+|-..+.
T Consensus 216 a~vI~IT~~~~SpLa~~aD~vL~~~~~e~~~~~~-~~~sr~~ql~viD~L~~~~~ 269 (293)
T PRK11337 216 AKIICITHSYHSPIAKLADYIICSPAPETPLLGR-NASARILQLTLLDAFFVSVA 269 (293)
T ss_pred CEEEEECCCCCCHHHHHCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 9499976999984689589988648876443444-45999999999999999999
No 56
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.55 E-value=2.4e-14 Score=118.79 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=97.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 356551035203654307999999998625667314304201-0012334455505775267881899999999863024
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
+.+.++|++.|+|+|+.+|...++.|.+ .+.++........ .......++++++|++|+||+|.+++++++.||++|+
T Consensus 10 i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~~~~~~~~~~ak~~g~ 88 (139)
T cd05013 10 LAKARRIYIFGVGSSGLVAEYLAYKLLR-LGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGA 88 (139)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCC-CCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9759928999808159999999999725-898279879627788887459999999997686363789999999998699
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 424651178763100024101367420011000788899999999999
Q gi|254780943|r 366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMA 413 (608)
Q Consensus 366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~lla 413 (608)
++++||+..+|++++.||.++++...+.. .+...|++++..++++-
T Consensus 89 ~ii~IT~~~~s~l~~~ad~~l~~~~~~~~--~~~~~~~s~~~~~~l~d 134 (139)
T cd05013 89 KVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALID 134 (139)
T ss_pred EEEEEECCCCCHHHHHCCEEEECCCCCCC--CCCCCHHHHHHHHHHHH
T ss_conf 79999799999779969999982886555--77688499999999999
No 57
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=2.1e-13 Score=112.20 Aligned_cols=177 Identities=20% Similarity=0.179 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 07899999974178999998715747664521111000023565510352036543079999999986256673143042
Q gi|254780943|r 247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS 326 (608)
Q Consensus 247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~as 326 (608)
+|...=-+=|..+-++|++.-+. ++.+ .....+..+..-.+|+++|+|-|-|.|.=.+--|.. +|.|..-..|+
T Consensus 9 ~~~~~ak~vl~~E~~al~~l~~~-l~~~----f~~av~~i~~~kGkvi~~GvGKSg~ia~KiaaTl~S-tGtps~flhp~ 82 (326)
T PRK10892 9 DFQQAGKEVLAIEREGLAELDQY-INQD----FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPG 82 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHC-CCCCCEECCHH
T ss_conf 89999999999999999999987-6678----999999998289988998386579999999999865-48751545743
Q ss_pred HHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHH
Q ss_conf 0100123-344555057752678818999999998630244246511787631000241013674200---110007888
Q gi|254780943|r 327 EFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAF 402 (608)
Q Consensus 327 Ef~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsf 402 (608)
|..+.+. .+.+++++|++|.||||.|.++.+.++|+.|+++++||.+++|+|++.||.++.+..-+| .+.|-|-|-
T Consensus 83 ea~HGDlG~i~~~D~~i~~S~SG~t~El~~ll~~~~~~~~~iI~it~~~~S~l~~~sd~~l~~~~~~Eacp~~laPTtSt 162 (326)
T PRK10892 83 EAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAPTSST 162 (326)
T ss_pred HCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHH
T ss_conf 40646556777899899995898757787641787766985899956999966880887896578744665677751899
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999999776212001577632
Q gi|254780943|r 403 TCQLLVLVIMAIYAGKVRGYINEEQERE 430 (608)
Q Consensus 403 taql~~l~llal~l~~~~g~i~~~~~~~ 430 (608)
|+|++..=.||..+.+.|| ++.+++..
T Consensus 163 t~~lalgDala~~lm~~rg-F~~~dFa~ 189 (326)
T PRK10892 163 TATLVMGDALAVALLKARG-FTAEDFAL 189 (326)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf 9999999899999999849-99868976
No 58
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=1.5e-13 Score=113.22 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=114.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 5655103520365430799999999862566731430420100123-344555057752678818999999998630244
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLT 366 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~ 366 (608)
..-.+|+++|+|-|-|.|.=..--|.. +|.|..-..|+|..+.+. .+.+++++|++|.||||.|.+..+.++|+.|++
T Consensus 40 ~~~G~vi~~GvGKSg~ia~KiaaTl~S-tGtps~f~hp~ea~HGDlG~i~~~D~~i~~S~SG~t~El~~~~~~~k~~~~~ 118 (321)
T PRK11543 40 HCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIA 118 (321)
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHC-CCCCEEECCCHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 189988999276579999999999865-4886543670111556656787899899995898817788772788766986
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 246511787631000241013674200---1100078889999999999999776212001577632
Q gi|254780943|r 367 IGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE 430 (608)
Q Consensus 367 tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~ 430 (608)
+++||.+++|+|++.||.++.+..-+| .+.|-|-|-|+|++..=.||..+.+.|+ ++.+++..
T Consensus 119 ii~it~~~~S~Lak~sd~~l~~~~~~Eacp~~LaPTtStt~~lalGDALAv~lm~~r~-F~~~dFa~ 184 (321)
T PRK11543 119 LLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARG-FNEEDFAR 184 (321)
T ss_pred EEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf 8999789999768826948972665666656777508999999998899999999959-99878976
No 59
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.52 E-value=5.1e-13 Score=109.59 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=121.1
Q ss_pred CCEEEEEECCCHHHHHH--HHHHHHHHC---CCCCEEEEEEEECCEEEEEECCCCHH-HHHHHHCCCCCCCCEEEEEECC
Q ss_conf 96699997250127999--999997631---58743489999589299994586589-9887521034786544651045
Q gi|254780943|r 1 MCGIVGIVGRESVGERL--FKALKRLEY---RGYDSSGMATICDGKIQCVRAQGKLS-ELEKELNKKPLKGNIGIAHTRW 74 (608)
Q Consensus 1 MCGI~G~~~~~~~~~~l--~~~L~~Le~---RG~Ds~Gia~~~~~~i~~~K~~g~i~-~l~~~~~~~~~~~~~gIgHtR~ 74 (608)
||=++|+.++.+. ..+ ..+..+..- .=.|.+||+++.++.+.++|+.-.+- +........++++.+.|+|+|-
T Consensus 1 MCrlLg~~g~~p~-~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHvR~ 79 (252)
T COG0121 1 MCRLLGMHGNPPT-DSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHVRK 79 (252)
T ss_pred CCEEEEECCCCCC-HHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCEEEEEEEC
T ss_conf 9546200079830-324230455334447887999606999749921797179864126466620113576479999720
Q ss_pred CCCCCCCCCCCCCEEEC----CEEEEECCEECCHHHH-HHHHHHCCCEEEECCCHHHHHHHHHHH----H---HHCCHH-
Q ss_conf 43889970026750238----8999976815068999-899997898897247615678887634----3---200102-
Q gi|254780943|r 75 ATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRL-KKEHFSSQQVFLTETDTEVIACLLEKF----I---KNGSSK- 141 (608)
Q Consensus 75 AT~G~~~~~NahP~~~~----~~~vvHNG~I~N~~el-r~~l~~~g~~f~s~tDsEvi~~li~~~----~---~~~~~~- 141 (608)
||.|.++..|+||+..+ .+..+|||.|.+|..+ +..+ .-..+||+|.....+... + +.+.+-
T Consensus 80 At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~-----~~~~~tds~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
T COG0121 80 ATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKL-----EPVGYTDSEAAFCGITDSERIFLLILKPGLDAL 154 (252)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 378856655789804157774079985680266541224466-----788741688998876544555553137772024
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC----------------CCCCEEEECCCCCCCCCC
Q ss_conf 67799999-----988751222010046872389997499607760----------------896136613762011111
Q gi|254780943|r 142 KETMQKLM-----QCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGH----------------GEGEMFVGSDVTALTLLT 200 (608)
Q Consensus 142 ~~ai~~~~-----~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~----------------~~~~~~vaSd~~al~~~t 200 (608)
..++.+.. ....|.+-++.... ...+..+|.|+.-.. ++..+++||++.--...
T Consensus 155 ~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~viaS~plt~~~~- 229 (252)
T COG0121 155 FQAEIRALGLFNTLLSDGNYLFALCST----ALHLLSRGAPFGAARYLDDDEEPDLYRYTDPGDVVVVIASEPLTDNEP- 229 (252)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEC----CCEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEECCCCCCCC-
T ss_conf 567787765467766445633015602----442783078246788458866625666157996189997123558988-
Q ss_pred CEEEECCCCEEEEEECCCC
Q ss_conf 0379827651889730574
Q gi|254780943|r 201 DKVTYMEDGDWAIIRNSGL 219 (608)
Q Consensus 201 ~~~~~L~dgei~~i~~~~~ 219 (608)
-..+++|+++.++.++.
T Consensus 230 --w~~v~~g~~~~v~~~~~ 246 (252)
T COG0121 230 --WTEVPPGELVTVKGGER 246 (252)
T ss_pred --CEECCCCCEEEEECCCE
T ss_conf --56837994899956935
No 60
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.43 E-value=1.7e-12 Score=106.00 Aligned_cols=139 Identities=24% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHH-H-------HHHH----CCC----CCEEEECC---HHHC---CCCCCCCCCEEEE
Q ss_conf 2356551035203654307999999-9-------9862----566----73143042---0100---1233445550577
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKF-W-------FERL----ARL----KVEIDVSS---EFRY---RDFVYSSKWASLF 343 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~-~-------~e~~----~~i----~v~v~~as---Ef~y---~~~~~~~~tlvI~ 343 (608)
.+++--|++.+|+|||=-.|..-.. + .+++ +|= ...++-|- |.-. ....++++++||+
T Consensus 54 ~l~~gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~~liAGG~~Al~~~~EgaED~~~~g~~dl~~~~~~~~DvvIg 133 (273)
T PRK05441 54 ALRSGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVG 133 (273)
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99759829997476158899988986487668998991446768899986361102468889999999828996578999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 52678818999999998630244246511787631000241013674200110007--8889999999999999776212
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRG 421 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g 421 (608)
||-||.|+-|+.|+++||+.|+.|++|+|+++|++.+.+|+.|.+..|||+=--|| |+-|+|-++|-|++-...-..|
T Consensus 134 IaASG~TPyv~~al~~A~~~ga~ti~I~~n~~s~l~~~ad~~I~~~tGpEvitGSTRmKAGTAqK~iLNmiST~~mi~lG 213 (273)
T PRK05441 134 IAASGRTPYVIGALEYAREIGALTIAISCNPGSPISKEADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIKLG 213 (273)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 93688971899999999986995799853896200010681375178843002666545225999999999899999808
Q ss_pred CHH
Q ss_conf 001
Q gi|254780943|r 422 YIN 424 (608)
Q Consensus 422 ~i~ 424 (608)
...
T Consensus 214 kVy 216 (273)
T PRK05441 214 KVY 216 (273)
T ss_pred CCC
T ss_conf 612
No 61
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.42 E-value=2.9e-12 Score=104.28 Aligned_cols=140 Identities=24% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHH-H-------HHHH----CC----CCCEEEECCHH------HCCCCCCCCCCEEEE
Q ss_conf 2356551035203654307999999-9-------9862----56----67314304201------001233445550577
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKF-W-------FERL----AR----LKVEIDVSSEF------RYRDFVYSSKWASLF 343 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~-~-------~e~~----~~----i~v~v~~asEf------~y~~~~~~~~tlvI~ 343 (608)
.+++--|++.+|.|||=--|..-.. + .+++ +| +...++.|.+. .-....+.+++.||+
T Consensus 45 ~l~~gGRl~Y~GAGTSGrlgvlDa~E~~PTFg~~~~~v~gliAGG~~al~~~~E~aED~~~~g~~dl~~~~~~~~DvVIg 124 (257)
T cd05007 45 RLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIG 124 (257)
T ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99659828998786058899988997398779998991102438899996453112566899999999808996458999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 52678818999999998630244246511787631000241013674200110007--8889999999999999776212
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRG 421 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g 421 (608)
||.||.|+.|+.++++||+.|+.|++|+|+++|++...+|+.|.+..|||+=--|| |+-|+|-++|-|++--..-..|
T Consensus 125 IsaSG~TPyv~~aL~~A~~~ga~ti~I~~n~~s~~~~~ad~~I~~~tGpEvi~GSTRmkaGTaqK~iLNmiST~~mi~lG 204 (257)
T cd05007 125 IAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLG 204 (257)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 94699985999999999986995787643886310002784687268850022354202257899999998899999808
Q ss_pred CHHH
Q ss_conf 0015
Q gi|254780943|r 422 YINE 425 (608)
Q Consensus 422 ~i~~ 425 (608)
....
T Consensus 205 kV~~ 208 (257)
T cd05007 205 KVYG 208 (257)
T ss_pred CCCC
T ss_conf 6127
No 62
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.35 E-value=8.3e-12 Score=101.15 Aligned_cols=138 Identities=23% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCC----------------EEEECCH---HH---CCCCCCCCCCEEE
Q ss_conf 235655103520365430799999-99986256673----------------1430420---10---0123344555057
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGK-FWFERLARLKV----------------EIDVSSE---FR---YRDFVYSSKWASL 342 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~-~~~e~~~~i~v----------------~v~~asE---f~---y~~~~~~~~tlvI 342 (608)
.+++--|++.+|+|||=--|+.-. =+.-. .+.|- .++-|.+ .- -....+.++++||
T Consensus 54 ~l~~gGRL~YvGAGTSGRlgvlDa~E~~PT-fg~~~~~v~~liAGG~~Al~~~vEgaED~~~~g~~dl~~~~~~~~DvVI 132 (296)
T PRK12570 54 AFKQGGRLIYMGAGTSGRLGVLDASECPPT-FSVSPEMVIGLIAGGPDAMLTAIEGAEDDPELGAQDLKAIGLTSDDVVV 132 (296)
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCC-CCCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 996598399977870589999999872786-5899899676763889998640302666699999999980899544799
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 752678818999999998630244246511787631000241013674200110007--888999999999999977621
Q gi|254780943|r 343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVR 420 (608)
Q Consensus 343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~ 420 (608)
+||-||.|+-|+.|+++||+.|+.|++|+|+++|++...+|+.|.+..|||+=--|| |+-|+|-++|-|++--..-..
T Consensus 133 giaASG~TPyv~~al~~A~~~Ga~ti~i~~n~~s~l~~~ad~~I~~~tGpEvi~GSTRmKAGTAqK~vLNmiST~~mi~l 212 (296)
T PRK12570 133 GIAASGRTPYVIGALEYAKQIGATTVALSCNPDSPIAQLADIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRL 212 (296)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98468885149999999998599679862488324566267525407880676367542105699999999889999981
Q ss_pred CCHH
Q ss_conf 2001
Q gi|254780943|r 421 GYIN 424 (608)
Q Consensus 421 g~i~ 424 (608)
|...
T Consensus 213 GkVy 216 (296)
T PRK12570 213 GKSY 216 (296)
T ss_pred CCCC
T ss_conf 8201
No 63
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.34 E-value=4.8e-11 Score=95.82 Aligned_cols=220 Identities=22% Similarity=0.293 Sum_probs=138.0
Q ss_pred HHHHHHHHHCCCCCEEEEEEEE-CCEEEEEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 9999997631587434899995-892999945865899887---521034786544651045438899700267502388
Q gi|254780943|r 17 LFKALKRLEYRGYDSSGMATIC-DGKIQCVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEG 92 (608)
Q Consensus 17 l~~~L~~Le~RG~Ds~Gia~~~-~~~i~~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~ 92 (608)
|+-.-+++|.+-.+...+.+.+ ..+--|||.......|.+ ++....+.+.++|.|.||+|+=-|++.-|||+.
T Consensus 160 Ly~~Rk~~E~~~~~~~~fYi~SLSsrTIVYKGml~~~ql~~fY~DL~d~~f~S~~al~HsRFSTNTfPsW~lAQPfR--- 236 (1483)
T PRK11750 160 LFIARRRAEKRLADDKDFYVCSLSNLVIIYKGLMMPADLPRFYLDLADLRLESAICVFHQRFSTNTLPRWPLAQPFR--- 236 (1483)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHCHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCH---
T ss_conf 99999999997343788797316678068846888788867460007976568899788776788899875026151---
Q ss_pred EEEEECCEECCHHHHHHHHHHCCCEE----------------EECCCHHHHHHHHHHHHHHCCHHHHHHHHHHH------
Q ss_conf 99997681506899989999789889----------------72476156788876343200102677999999------
Q gi|254780943|r 93 IAVTHNGIIENFSRLKKEHFSSQQVF----------------LTETDTEVIACLLEKFIKNGSSKKETMQKLMQ------ 150 (608)
Q Consensus 93 ~~vvHNG~I~N~~elr~~l~~~g~~f----------------~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~------ 150 (608)
.++|||.|---.-.+.-...+...+ ...+||-.+=+.++.+...|.++.+|+.-++.
T Consensus 237 -~laHNGEINTirGN~nwm~ARe~~l~s~~~~dl~~l~Pii~~~~SDSa~lDn~lElLv~~Grsl~~A~~mliPeAw~~~ 315 (1483)
T PRK11750 237 -YLAHNGEINTITGNRQWARARAYKFQTPLLPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNN 315 (1483)
T ss_pred -HCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCC
T ss_conf -0321627878888999999757643586523176528747999981788999999998749988999986187021188
Q ss_pred -------------------HHHHHHHHHHHCCCCCCEEEEE---ECC-CCE-EEECCCCCEEEECCCCCCCCCCCEEE--
Q ss_conf -------------------8875122201004687238999---749-960-77608961366137620111110379--
Q gi|254780943|r 151 -------------------CLTGSYSIAVIFEDDPHSIIVA---RKG-PPL-IIGHGEGEMFVGSDVTALTLLTDKVT-- 204 (608)
Q Consensus 151 -------------------~l~G~ya~~il~~~~p~~i~~a---r~g-sPL-~iG~~~~~~~vaSd~~al~~~t~~~~-- 204 (608)
-++|.-++++. + ++.+.| ||| .|+ ++-.+|+.+++|||.=.+.---++++
T Consensus 316 ~~m~~~~rafYeY~s~~mEPWDGPAaI~ft--D--G~~iga~LDRNGLRP~Ry~iT~D~~vi~aSE~Gvv~~~~~~I~~k 391 (1483)
T PRK11750 316 PDMDPDLRAFYEFNSMHMEPWDGPAGIVMT--D--GRYAACNLDRNGLRPARYVITKDRLITLASEVGIWDYQPDEVVEK 391 (1483)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEEE--C--CCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHCEEC
T ss_conf 778989999999987216877785478860--6--988999603678885157884698899983378767988883045
Q ss_pred -ECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHHH
Q ss_conf -827651889730574100333222100011000121000014078999999
Q gi|254780943|r 205 -YMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEKE 255 (608)
Q Consensus 205 -~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~kE 255 (608)
-|.+|+++.++-..=++++.. + +..+.+.+.+|..|..+.
T Consensus 392 gRL~PG~m~~vD~~~Gri~~d~--e---------ik~~la~~~Py~~Wl~~~ 432 (1483)
T PRK11750 392 GRVGPGELLVIDTRTGRILHSA--E---------IDNDLKSRHPYKEWLEKN 432 (1483)
T ss_pred CCCCCCCEEEEECCCCEEECHH--H---------HHHHHHHCCCHHHHHHHH
T ss_conf 7748972689987799684389--9---------999987509889999962
No 64
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=99.28 E-value=5.3e-11 Score=95.52 Aligned_cols=134 Identities=24% Similarity=0.278 Sum_probs=106.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 103520365430799999999862--566731430420100123-34455505775267881899999999863024424
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERL--ARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIG 368 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~--~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~ti 368 (608)
++++.|.|=| |++||-+.-.+ +|-|..-.-|.|-.+-+- -+.++|+|++||-||||.|...-+-..|+.+.+.|
T Consensus 2 klVv~GiGKS---GliGkK~vAt~aSTGtPSfFlHPtEA~HGDLGMv~~~Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~li 78 (272)
T TIGR00393 2 KLVVVGIGKS---GLIGKKIVATFASTGTPSFFLHPTEALHGDLGMVEPRDVVLLISYSGESKELDKLIPSLKRLSVKLI 78 (272)
T ss_pred EEEEEECCCH---HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 0899840706---6789999997412477553246434503643575867479998768875778775357775597089
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 6511787631000241013674200---110007888999999999999977621200157763
Q gi|254780943|r 369 SLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQER 429 (608)
Q Consensus 369 aItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~ 429 (608)
++|..|+|+|+|.+|+++.+..-.| +..|=|=|=+.+++.-=-||..+-++|+ .++++..
T Consensus 79 a~T~~p~S~La~~Ad~~L~i~v~kEaCP~~lAPTsSt~~TL~lGDaLa~al~~Arn-F~~eDFA 141 (272)
T TIGR00393 79 AVTGKPNSSLARAADYVLDIKVEKEACPLNLAPTSSTTVTLALGDALAVALMKARN-FSEEDFA 141 (272)
T ss_pred EECCCCCCCHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHH
T ss_conf 97288897245306545766775302789897356899999988999999985258-8842441
No 65
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.28 E-value=3.6e-11 Score=96.75 Aligned_cols=167 Identities=24% Similarity=0.234 Sum_probs=111.0
Q ss_pred HHHHHHHHC----HHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE-E--E
Q ss_conf 999997417----89999987157476645211110000235655103520365430799999999862566731-4--3
Q gi|254780943|r 251 FMEKEIYEQ----PEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVE-I--D 323 (608)
Q Consensus 251 fm~kEI~EQ----P~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~-v--~ 323 (608)
=|++-|.+| |.++++.+-.. ... -+.....|++--|++.+|.|||---+..-..=.---.++|-+ | .
T Consensus 23 e~l~~~n~ed~~v~~AV~~alp~I----a~A--v~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~Vigl 96 (298)
T COG2103 23 EMLRLINDEDQKVPLAVEAALPQI----AAA--VDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGL 96 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHCCCCCCCCHHHEEEE
T ss_conf 999998666468899999976889----999--99999999729849997477654201032511789768886685656
Q ss_pred EC----------------CHH---HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 04----------------201---00123344555057752678818999999998630244246511787631000241
Q gi|254780943|r 324 VS----------------SEF---RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDF 384 (608)
Q Consensus 324 ~a----------------sEf---~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~ 384 (608)
+| -|. --.+..+.++++||+|+-||.|+-++.++++||+.|++|++|.|+++|++++.+|+
T Consensus 97 IAGG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~ 176 (298)
T COG2103 97 IAGGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADI 176 (298)
T ss_pred ECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCC
T ss_conf 43878999976337544487899999974999677799985079983035889998864974899604899634553683
Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 013674200110007--888999999999999977621200
Q gi|254780943|r 385 IFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRGYI 423 (608)
Q Consensus 385 ~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g~i 423 (608)
.|..-.|||+=--|| |+=|+|-++|-||+-...-..|..
T Consensus 177 ~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKv 217 (298)
T COG2103 177 AIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKV 217 (298)
T ss_pred CEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 32525584010366433453299999999989999972211
No 66
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=99.27 E-value=4.6e-11 Score=95.98 Aligned_cols=126 Identities=32% Similarity=0.415 Sum_probs=105.9
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 42036145521366449999999999997422114423243144637880798718999448014688999999998279
Q gi|254780943|r 460 LAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG 539 (608)
Q Consensus 460 ~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg 539 (608)
+.+.++++|+|+|.+|.+|++++.||+++.+..+..+.+.||.|++.++++++.++|++...+++.+ ++..+++++.+|
T Consensus 2 l~~a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~-~~~~~~~a~~~g 80 (131)
T pfam01380 2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRD-LLEAAKLLKARG 80 (131)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCC
T ss_conf 7678989999932699999999999998689877863658866067567999999999548986576-898789999849
Q ss_pred CEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 808999565321000134662798688781566589999999999999
Q gi|254780943|r 540 GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCT 587 (608)
Q Consensus 540 ~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~ 587 (608)
++++.||+..+....... +.++.+|..+|...+-......|++..++
T Consensus 81 ~~~i~iT~~~~S~la~~a-d~~l~~~~~~e~~~~~t~s~~~~l~~l~~ 127 (131)
T pfam01380 81 AKIIAITDSKGSPLAREA-DHVLYIIAGPEAGVASTKSLTLQLALLDA 127 (131)
T ss_pred CEEEEEECCCCCHHHHHC-CEEEECCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 969999899999789968-99898799875654568999999999999
No 67
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=99.25 E-value=1.1e-08 Score=79.55 Aligned_cols=279 Identities=18% Similarity=0.197 Sum_probs=148.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 35655103520365430799999999862-56673143042010012334455505775267881899999999863024
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERL-ARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~-~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
..++++|+|.|+|-|==+|-..+-|.... ..+|+.|.- +|.+ +...+.++++|++|=||.|.||+.|++.|+++++
T Consensus 24 ~e~~~~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvfvv~--DY~~-p~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~~~ 100 (338)
T TIGR02128 24 IEAYDEIVISGMGGSGIAGRILSELLLEKSFEVPVFVVK--DYRL-PAFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGA 100 (338)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEC--CCCC-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 465562278725657899999999865324788888870--7789-6988985179998617866899999999986579
Q ss_pred CEEEEECCCCCCCCCCC-CC---CCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 42465117876310002-41---0136742--001100078889999999999999776212001577632279998759
Q gi|254780943|r 366 TIGSLVNVLESTIARES-DF---IFPIKAG--PEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIP 439 (608)
Q Consensus 366 ~tiaItN~~~S~la~~a-D~---~i~~~aG--~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp 439 (608)
++++||. |-.|.+++ .. ++-+--| |=.+++ -+|.-++++-.. . .+.+..| .+.+....-+..+-
T Consensus 101 ~~~aITS--GG~L~e~A~e~g~~~i~iP~G~qPR~a~p--ysfiPyl~~~~~-~-~~~~~~g----~d~~~~~~~~gd~~ 170 (338)
T TIGR02128 101 KVIAITS--GGKLEEMAKEEGLDVIKIPKGLQPRAALP--YSFIPYLLTALI-L-MLIKPLG----IDIEEAERVLGDLK 170 (338)
T ss_pred CEEEEEC--CCHHHHHCCCCCCCEEEECCCCCCCCCCC--HHHHHHHHHHHH-H-HHHCCCC----CCHHHHHHHHHHHH
T ss_conf 5599944--85388630114875688288611321040--568999999999-9-7621247----42436666788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECC-CCHHHHHHHHHHHHHHHHHHC--CCCCHHHCCCCCHHHHCC----
Q ss_conf 99999999767744677987420-3614552136-644999999999999742211--442324314463788079----
Q gi|254780943|r 440 RKMFDVLQNIYSQIEKLCCGLAK-CQTLLYVGRG-SSYPLALEGALKIKEISYLHA--EGYAAGELKHGPIALITE---- 511 (608)
Q Consensus 440 ~~i~~~l~~~~~~i~~~a~~~~~-~~~~~~lG~G-~~y~~A~EgALKlkE~syiha--eg~~agE~kHGP~ali~~---- 511 (608)
+.+....+..+...+++|.++.. .+--++-|.. +..++|.===--|=|=|-++| +=|| |+-|==+...+.
T Consensus 171 E~l~~~~~~~k~~~~~LA~~i~~G~riPvIy~~~G~~~~iA~R~K~eiNENAK~pA~~~~~p--E~nHNei~~~~~~~~~ 248 (338)
T TIGR02128 171 ERLIEDTEKLKALAKRLAEEIYNGYRIPVIYSSSGPTRPIAERWKNEINENAKIPAYFNILP--ELNHNEIEGLEDPKEV 248 (338)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCC
T ss_conf 65320165235789999999867920518870788714776777555533126532010057--8755521256786200
Q ss_pred ---CCEEEEEECCCHHHHHH-HHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCEEECCCC----CHHHHHHHHHHH-HH
Q ss_conf ---87189994480146889-999999982-798089995653210001346627986887----815665899999-99
Q gi|254780943|r 512 ---GTFVIAIAPYDRFFQKT-LSNIQEIVT-RGGRVIFITDEEGLKRQDFPSIETIVLPSM----GEIVSPIVFSLP-IQ 581 (608)
Q Consensus 512 ---~~~vi~i~~~~~~~~k~-~s~~~Ei~a-rg~~vi~I~~~~~~~~~~~~~~~~i~iP~~----~~~l~pl~~~ip-lQ 581 (608)
..++|.....|+..-+. +.-.++|-. .|..++.| . |.. +..++-+++.+- .-
T Consensus 249 ~~l~~~~~~~~~~d~~r~~~r~~~T~~i~~~~g~~~~~I-----------------~-~~~rGGP~s~la~~~sL~~l~g 310 (338)
T TIGR02128 249 YGLYEIVFLSDESDHSRVKKRVDITEKILGEYGVSFISI-----------------Y-SVGRGGPNSLLARILSLIHLAG 310 (338)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHEEEHHHCCCCCCCEEE-----------------E-EEECCCCCHHHHHHHHHHHHHH
T ss_conf 015124898873676511111101000332614332167-----------------5-3212786138999999999977
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999838779889
Q gi|254780943|r 582 MIAYCTAVLIGTDVDQP 598 (608)
Q Consensus 582 llAy~~A~~~G~dpD~P 598 (608)
+.++++|..||.||+.=
T Consensus 311 ~~Sv~LA~l~g~~P~~~ 327 (338)
T TIGR02128 311 LVSVKLAELRGVDPEPV 327 (338)
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 89898999847883136
No 68
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.22 E-value=1.8e-10 Score=91.79 Aligned_cols=199 Identities=20% Similarity=0.279 Sum_probs=123.4
Q ss_pred HHHHHHHHHCCCCC-EEEEEEEE-CCEEEEEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEC
Q ss_conf 99999976315874-34899995-892999945865899887---52103478654465104543889970026750238
Q gi|254780943|r 17 LFKALKRLEYRGYD-SSGMATIC-DGKIQCVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE 91 (608)
Q Consensus 17 l~~~L~~Le~RG~D-s~Gia~~~-~~~i~~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~ 91 (608)
|+-.-+++|++-.. ..++.+.+ ..+.-+||+......|.+ .+....+.+.+++.|.||+|+--|++.-|||+.
T Consensus 148 Ly~~Rk~ie~~~~~~~~~fYi~SlSsrtIVYKGml~~~ql~~fY~DL~d~~~~s~~al~H~RFSTNTfPsW~lAqPfR-- 225 (413)
T cd00713 148 LYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLAQPFR-- 225 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCH--
T ss_conf 999999999998844788699753514178641257899988616636976589998788305689999873027550--
Q ss_pred CEEEEECCEECCH------HHHHHHHHH----------C-CCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----
Q ss_conf 8999976815068------999899997----------8-988972476156788876343200102677999999----
Q gi|254780943|r 92 GIAVTHNGIIENF------SRLKKEHFS----------S-QQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQ---- 150 (608)
Q Consensus 92 ~~~vvHNG~I~N~------~elr~~l~~----------~-g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~---- 150 (608)
.++|||.|--. ..-|+.... . ...-...+||--+=+.++.+...|.++.+|+.-++.
T Consensus 226 --~laHNGEINTi~GN~nwm~aRe~~~~s~~~~~~~~~l~Pi~~~~~SDSa~lDn~lElL~~~Grsl~~a~~mliPeaw~ 303 (413)
T cd00713 226 --YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQ 303 (413)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHC
T ss_conf --000276300156579999987776418753021886478769998446689999999974699899999873956343
Q ss_pred ---------------------HHHHHHHHHHHCCCCCCEEEEE---ECC-CCEEEECCCC-CEEEECCCCCCCCCCCEEE
Q ss_conf ---------------------8875122201004687238999---749-9607760896-1366137620111110379
Q gi|254780943|r 151 ---------------------CLTGSYSIAVIFEDDPHSIIVA---RKG-PPLIIGHGEG-EMFVGSDVTALTLLTDKVT 204 (608)
Q Consensus 151 ---------------------~l~G~ya~~il~~~~p~~i~~a---r~g-sPL~iG~~~~-~~~vaSd~~al~~~t~~~~ 204 (608)
-.+|.-++++. + ++.++| ||| .|.=+-..++ .+++|||.=.+.--..+++
T Consensus 304 ~~~~m~~~~rafYeY~s~~mEPWDGPAai~ft--d--G~~iga~LDRNGLRP~Ry~iT~D~~~i~aSE~Gvv~~~~~~v~ 379 (413)
T cd00713 304 NNPTMDPELRAFYEYHSSLMEPWDGPAAIAFT--D--GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVV 379 (413)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE--C--CCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHCE
T ss_conf 68779999999999998318877787589984--6--9889998226889842589974998999816986458878822
Q ss_pred ---ECCCCEEEEEECCCCEECC
Q ss_conf ---8276518897305741003
Q gi|254780943|r 205 ---YMEDGDWAIIRNSGLTIYD 223 (608)
Q Consensus 205 ---~L~dgei~~i~~~~~~i~~ 223 (608)
-|++|+++.++-..-++++
T Consensus 380 ~kgrL~PG~m~~vD~~~g~i~~ 401 (413)
T cd00713 380 EKGRLGPGEMLLVDLEEGRILD 401 (413)
T ss_pred ECCCCCCCCEEEEECCCCEECC
T ss_conf 1368799816999987896815
No 69
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.20 E-value=5.9e-11 Score=95.24 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=72.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0352036543079999999986256673143042010012--33445550577526788189999999986302442465
Q gi|254780943|r 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRD--FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 293 I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~--~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
|++.|.|+|++.|...++.|.++.++++....++++.+.. ....+++++|++|+||+|.|++.+++.||++|+++++|
T Consensus 1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e~~~~~~~ak~~g~~vi~I 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997175699999999998751494179989528777646513789998999979979889999999999879989998
Q ss_pred E
Q ss_conf 1
Q gi|254780943|r 371 V 371 (608)
Q Consensus 371 t 371 (608)
|
T Consensus 81 T 81 (87)
T cd04795 81 T 81 (87)
T ss_pred E
T ss_conf 3
No 70
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=99.15 E-value=6.7e-10 Score=87.90 Aligned_cols=166 Identities=24% Similarity=0.270 Sum_probs=113.6
Q ss_pred HHHHHHHC----HHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHH---------------------
Q ss_conf 99997417----89999987157476645211110000235655103520365430799---------------------
Q gi|254780943|r 252 MEKEIYEQ----PEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGL--------------------- 306 (608)
Q Consensus 252 m~kEI~EQ----P~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal--------------------- 306 (608)
|.|=|-+| |-++.+++.. ...--+.....|.+=-|++.+|.|||==-|.
T Consensus 21 ~~~l~N~eD~~v~~Av~~~lpd------i~~Avd~i~~~~~~GGRLiY~GAGTSGRLGvLDAvECPPTy~v~~~lV~Gi~ 94 (291)
T TIGR00274 21 IVRLINEEDKLVPLAVEEVLPD------IAAAVDVIVEAFQKGGRLIYIGAGTSGRLGVLDAVECPPTYGVSPELVVGII 94 (291)
T ss_pred HHHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEH
T ss_conf 9998510244379999874288------9999999999986798089876875331022356468489898821014203
Q ss_pred H-HHHHHHHHCCCCCEEEECCH--HH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 9-99999862566731430420--10-01233445550577526788189999999986302442465117876310002
Q gi|254780943|r 307 V-GKFWFERLARLKVEIDVSSE--FR-YRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES 382 (608)
Q Consensus 307 ~-~~~~~e~~~~i~v~v~~asE--f~-y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a 382 (608)
+ |.+.|.+-.. =.+...| .. -++..++++|+||+|.=||.|+-++.+|++||+.|++||+|+++|+|.++..|
T Consensus 95 AGG~~A~~~a~E---G~ED~~~~G~~dL~~i~lt~~DvvvgIaASGrTPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~~A 171 (291)
T TIGR00274 95 AGGEEAILHAVE---GAEDSEEAGANDLKNIRLTKNDVVVGIAASGRTPYVIGALEYARKLGAKTIAIACNPESAVSKQA 171 (291)
T ss_pred HHHHHHHHCCCC---CCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 001688611336---74423588899987322563476888817897578999999999707825777417742231214
Q ss_pred CCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 41013674200110007--888999999999999977621200157
Q gi|254780943|r 383 DFIFPIKAGPEIGVAST--KAFTCQLLVLVIMAIYAGKVRGYINEE 426 (608)
Q Consensus 383 D~~i~~~aG~Ei~VasT--Ksftaql~~l~llal~l~~~~g~i~~~ 426 (608)
|+.|.+-.|||+=--|| |+=|+|=++|-||+-.+.-..|+..++
T Consensus 172 d~~I~~~vGPEi~tGStRlKAgTa~KmvLNmLSTa~Mvk~GKvYeN 217 (291)
T TIGR00274 172 DVAIEVIVGPEILTGSTRLKAGTAQKMVLNMLSTAVMVKLGKVYEN 217 (291)
T ss_pred CCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
T ss_conf 4300232044300000134799999999999889888874110015
No 71
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.07 E-value=4.3e-10 Score=89.21 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=74.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 10352036543079999999986256673143042010012-33445550577526788189999999986302442465
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRD-FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~-~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
+|++.|+|.|--+|-..+-+++...++|+.+.-. |.. ..++++||||++|.||+|.||+.+++.|+++|+++++|
T Consensus 1 ~Ivv~GmGGS~i~gd~l~~~~~~~~~vPv~v~rd----y~lP~~v~~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~i 76 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKD----YTLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI 76 (119)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC----CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9899956388899999999970579988798489----989875587878999928979689999999999859909998
Q ss_pred ECCCCCCCCCCCCC
Q ss_conf 11787631000241
Q gi|254780943|r 371 VNVLESTIARESDF 384 (608)
Q Consensus 371 tN~~~S~la~~aD~ 384 (608)
| .+..|.+.|..
T Consensus 77 t--sGG~L~~~a~~ 88 (119)
T cd05017 77 T--SGGKLLEMARE 88 (119)
T ss_pred C--CCCHHHHHHHH
T ss_conf 4--99559999988
No 72
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.82 E-value=4.9e-07 Score=67.95 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHH
Q ss_conf 2799987599999999976--77446779874203614552136644999999999999742211442324314463788
Q gi|254780943|r 431 LIRSLVEIPRKMFDVLQNI--YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIAL 508 (608)
Q Consensus 431 ~~~~L~~lp~~i~~~l~~~--~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~al 508 (608)
+.+++-.-|+.+.+++... ........+.+.+.++++++|+|.+|=.|+=|.-=|.+++-++++...|.||+.-+.-
T Consensus 254 MlKEI~EQP~~i~~tl~~ri~~~~~~~~~~~l~~i~~I~ivaCGTSyhA~lv~ky~~E~la~ipv~v~~ASEFry~~~~- 332 (604)
T PRK00331 254 MLKEIYEQPEVIRDTLEGRLDEDGEIDLDEDLKKIDRIYIVACGTSYHAGLVAKYWIESLAGIPVEVEIASEFRYRDPV- 332 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCC-
T ss_conf 9999975489999999865086652225999863775899972568999999999999964999728886120345777-
Q ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC--------CCCCHHHHHHHHHHHH
Q ss_conf 07987189994480146889999999982798089995653210001346627986--------8878156658999999
Q gi|254780943|r 509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL--------PSMGEIVSPIVFSLPI 580 (608)
Q Consensus 509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i--------P~~~~~l~pl~~~ipl 580 (608)
+++++.+|++...+++.+ ++.+++..|.+|++++.|++..+.......+. .+.+ +.+..+.+ .++.+
T Consensus 333 ~~~~~l~i~iSQSGET~D-tl~al~~ak~~ga~tiaIvNv~~Ssiar~sD~-~i~~~aGpEi~VASTKafts---Ql~~l 407 (604)
T PRK00331 333 LSPNTLVIAISQSGETAD-TLAALRLAKELGAKTLAICNVPGSTLARESDL-VLYTHAGPEIGVASTKAFTT---QLAVL 407 (604)
T ss_pred CCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-EEEECCCCEEEECCCCHHHH---HHHHH
T ss_conf 666438999757888378-99999999877994898606899532314581-78855723574312303799---99999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998387
Q gi|254780943|r 581 QMIAYCTAVLIGT 593 (608)
Q Consensus 581 QllAy~~A~~~G~ 593 (608)
-+||.++|..+|.
T Consensus 408 ~llal~la~~~~~ 420 (604)
T PRK00331 408 YLLALALAKARGT 420 (604)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998399
No 73
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.75 E-value=3.4e-07 Score=69.06 Aligned_cols=148 Identities=11% Similarity=0.140 Sum_probs=100.5
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEEEECCHHHC
Q ss_conf 9999741789999987157476645211110000235655103520365430799-999999862566731430420100
Q gi|254780943|r 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGL-VGKFWFERLARLKVEIDVSSEFRY 330 (608)
Q Consensus 252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~~i~v~v~~asEf~y 330 (608)
+.+++..-|+.+.+++...-+ .. . ......++.+.++++|.|.+|-.|+ -|.--+..++-++++.+.|.||.+
T Consensus 183 ~~~~L~~lp~~i~~~l~~~~~----~~-~-~la~~~~~~~~~~~lGrG~~~pia~~EgALKLKEisYIHAegy~agElKH 256 (347)
T PRK11382 183 IKNDLKQLPNALGHLVRTWEE----KG-R-QLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRH 256 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HH-H-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 999999999999999985089----99-9-99999851774599824866165799999999988777523355877267
Q ss_pred CCC-CCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 123-344555057752678818-999999998630244246511787631000241013674200110007888999999
Q gi|254780943|r 331 RDF-VYSSKWASLFISQSGETA-DTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLV 408 (608)
Q Consensus 331 ~~~-~~~~~tlvI~iSQSGeT~-dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~ 408 (608)
.+. .+++++-||++--.+++. .+..+++..|.+|+.++.|....-+ ...+ |..+ .+ -.++.
T Consensus 257 GPiALId~~~PVi~i~~~d~~~~~~~~~i~evkarg~~vivid~~~~~---~~~~--------~~l~-----Pi-l~~iP 319 (347)
T PRK11382 257 GPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEIS---QGLH--------PWLA-----PF-LMFVP 319 (347)
T ss_pred CCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCC--------HHHH-----HH-HHHHH
T ss_conf 708663799867999548505899999999999759908996141036---7754--------6784-----99-99999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999997762120
Q gi|254780943|r 409 LVIMAIYAGKVRGY 422 (608)
Q Consensus 409 l~llal~l~~~~g~ 422 (608)
|.+||.+++..||.
T Consensus 320 lQLlAY~~A~~rG~ 333 (347)
T PRK11382 320 MEWLCYYLSIYKDH 333 (347)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999997798
No 74
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.73 E-value=1.4e-07 Score=71.72 Aligned_cols=118 Identities=24% Similarity=0.198 Sum_probs=88.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r 465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
+++|+|+|.+|..|+-+...+++.+.++++.+.+.||.|.--..+++++.+|++...+++.+ ++..++..|.+|++++.
T Consensus 1 nI~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T~e-~i~a~~~ak~~g~~tia 79 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKE-TVAAAKFAKEKGATVIG 79 (120)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCEEEE
T ss_conf 99999961999999999999986678179998510124369876799969999837989789-99999999986995999
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 956532100013466279868878156658999999999999
Q gi|254780943|r 545 ITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYC 586 (608)
Q Consensus 545 I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~ 586 (608)
||+..+....+..+ .++..+...+..++ -....|+||-+
T Consensus 80 iT~~~~S~la~~aD-~~i~~g~e~~~~~t--k~~~~~~~al~ 118 (120)
T cd05710 80 LTDDEDSPLAKLAD-YVIVYGFEIDAVEE--KYLLLYMLALR 118 (120)
T ss_pred EECCCCCHHHHHCC-EEEECCCCCCCHHH--HHHHHHHHHHH
T ss_conf 98989898799679-88888996320208--99999999998
No 75
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=4.9e-08 Score=74.93 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=80.0
Q ss_pred CCCCCCCEEEEECCCCCCHH------HHHHHHHHHHCCCCCEEE---------ECCHHHC-------CCCCCCCCCEEEE
Q ss_conf 23565510352036543079------999999986256673143---------0420100-------1233445550577
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAG------LVGKFWFERLARLKVEID---------VSSEFRY-------RDFVYSSKWASLF 343 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aa------l~~~~~~e~~~~i~v~v~---------~asEf~y-------~~~~~~~~tlvI~ 343 (608)
.+++-.+|+..|.|.|+--| +.++|.+|+ -.+|+-+. .+.+|.| -+..-.+.+++|+
T Consensus 37 ~l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR-~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLig 115 (176)
T COG0279 37 SLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER-PSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIG 115 (176)
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99769979997698524518999999860787527-89873686426377765650455889999999952788878999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5267881899999999863024424651178763100024101367420011000788
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKA 401 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKs 401 (608)
||-||.+..++.|++.||++|.+|+++|..-+-.|+..+|+ |+.|||+++
T Consensus 116 ISTSGNS~nVi~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~--------~i~VPs~~t 165 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDV--------EIRVPSTDT 165 (176)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCE--------EEECCCCCC
T ss_conf 81799977899999999876987999955887500011315--------786588862
No 76
>PRK13938 phosphoheptose isomerase; Provisional
Probab=98.64 E-value=1.3e-07 Score=71.99 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEECCCCCCHHH-HHHHHHHHH----CCCCCEEE---------ECCHHHCC-------CCCCCCCCEEEEE
Q ss_conf 235655103520365430799-999999862----56673143---------04201001-------2334455505775
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGL-VGKFWFERL----ARLKVEID---------VSSEFRYR-------DFVYSSKWASLFI 344 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~----~~i~v~v~---------~asEf~y~-------~~~~~~~tlvI~i 344 (608)
.+++-.+|++.|.|.|.--|+ .+.-+..++ -.+|+..- .+.+|.|. .....+++++|++
T Consensus 41 ~~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~vF~rQl~al~~~gDvLi~i 120 (196)
T PRK13938 41 GYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAI 120 (196)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99879989999686889999999999863335789984745447880788887624789999999999716899989997
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 26788189999999986302442465117876310002410136
Q gi|254780943|r 345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI 388 (608)
Q Consensus 345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~ 388 (608)
|-||+|..+++|+++||++|.+|+++|...+..+.+.+|..+.+
T Consensus 121 StSGnS~NIi~A~~~Ak~~g~~~i~ltG~~gg~l~~l~D~~i~v 164 (196)
T PRK13938 121 STSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCEEEEE
T ss_conf 79999999999999999879989999889963177548989993
No 77
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=98.63 E-value=1.3e-07 Score=72.03 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CCCEEEE--C-------CHHHC-------CCCCCCCCCEEE
Q ss_conf 3565510352036543079999999986256--------6731430--4-------20100-------123344555057
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLAR--------LKVEIDV--S-------SEFRY-------RDFVYSSKWASL 342 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~--------i~v~v~~--a-------sEf~y-------~~~~~~~~tlvI 342 (608)
+.+-.+|++.|.|.|- ..++++-..+.+ +|+.... + .++.| -.....+++++|
T Consensus 30 ~~~g~kI~~~GNGgSa---~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~~~if~~ql~~~~~~gDili 106 (177)
T cd05006 30 LLNGGKILICGNGGSA---ADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDVLI 106 (177)
T ss_pred HHCCCEEEEEECCHHH---HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9879989999687408---8899999987357666888701797678778888875653299999999997446898899
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 752678818999999998630244246511787631000241013674
Q gi|254780943|r 343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390 (608)
Q Consensus 343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a 390 (608)
++|.||.|.++++|+++||++|++++++|...++.+.+.+|..+.+..
T Consensus 107 ~iS~sG~s~nii~a~~~ak~~g~~~i~ltg~~gg~l~~~~D~~i~vps 154 (177)
T cd05006 107 GISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPS 154 (177)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECC
T ss_conf 981899998999999999987998999987898616761998999699
No 78
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=9.1e-06 Score=59.16 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHH-HHHHHHHHH
Q ss_conf 0235655103520365430799999999862566731430420100123-34455505775267881899-999999863
Q gi|254780943|r 285 YDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADT-LASLRYMRT 362 (608)
Q Consensus 285 ~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dt-i~Al~~ak~ 362 (608)
...++.++++++|+|-.|=+++-++--|..++.+++.+..++||++.+. .+++++.||..-+.++|.+. .++++..++
T Consensus 196 ~~~~~~~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~ 275 (340)
T COG2222 196 EEYADEDRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKN 275 (340)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 97358977999778521799999999999870400155113410147597737995299994487404579999999986
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 024424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r 363 QGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY 422 (608)
Q Consensus 363 ~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~ 422 (608)
.|++++.|-... .+..++.. +.+-.- ......+.+++.++..++..||.
T Consensus 276 ~ga~v~vi~a~~-------~~~~~~~~---~~~~~l-~~~~~~~~v~~~~~~~~a~~rg~ 324 (340)
T COG2222 276 YGAKVLVIDAKD-------AALDLIDQ---RVRHDL-APPLLSLVVAQRLAYALAVARGH 324 (340)
T ss_pred HCCEEEEECCCC-------CCCCCCCC---CCCCHH-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 088699974766-------56677771---224136-67888878999999999986199
No 79
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=98.59 E-value=2.5e-07 Score=69.97 Aligned_cols=103 Identities=20% Similarity=0.181 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEECCCCCC-HHHHHHHHHHHH----CCCCCEEE--------ECCHHHCC-------CCCCCCCCEEEEEC
Q ss_conf 235655103520365430-799999999862----56673143--------04201001-------23344555057752
Q gi|254780943|r 286 DFANISGLLVSSCGTSYL-AGLVGKFWFERL----ARLKVEID--------VSSEFRYR-------DFVYSSKWASLFIS 345 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~-Aal~~~~~~e~~----~~i~v~v~--------~asEf~y~-------~~~~~~~tlvI~iS 345 (608)
.+++-.+|++.|.|.|.- |...+.-+..++ .++|+... .+.++.|. .....+++++|++|
T Consensus 40 ~~~~g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~Lsd~s~lTa~~ND~g~e~iF~~Ql~~~~~~gDvLi~iS 119 (192)
T PRK00414 40 SFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIS 119 (192)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99879979999685889999999998746314466654325327677750100766488999999998178999999976
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6788189999999986302442465117876310002410136
Q gi|254780943|r 346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI 388 (608)
Q Consensus 346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~ 388 (608)
-||.|..+++|+++||++|.+++++|...+..+...+|..+.+
T Consensus 120 ~SGnS~Nii~A~~~Ak~~g~~~i~ltG~~GG~l~~l~D~~i~V 162 (192)
T PRK00414 120 TSGNSGNIIKAIEAAREKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
T ss_conf 8999999999999999889989999779961477608979991
No 80
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=98.58 E-value=6.2e-08 Score=74.19 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=88.8
Q ss_pred HHHHHCHHHHHHHH--HCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHCCCCCEE---
Q ss_conf 99741789999987--157476645211110000235655103520365430------7999999998625667314---
Q gi|254780943|r 254 KEIYEQPEAISRVL--SHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYL------AGLVGKFWFERLARLKVEI--- 322 (608)
Q Consensus 254 kEI~EQP~~l~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~------Aal~~~~~~e~~~~i~v~v--- 322 (608)
+|..|.-+++.+.+ +...+.-.+.+ -+.-..|++-.+|+++|.|+|.- |-++++|-+|| -++|+-+
T Consensus 3 ~~l~~~~~~l~~~~~De~~~~Ai~~aa--~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR-~glPAIAL~t 79 (186)
T TIGR00441 3 KELTEAAEALEKSLKDEALIEAIQRAA--LLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLER-PGLPAIALNT 79 (186)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCCCHHHHHH
T ss_conf 678999999999873045088999999--9999999808908985685043358889998716400026-7764677762
Q ss_pred ------EECCHHHC-------CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCC
Q ss_conf ------30420100-------1233445550577526788189999999986302442465117876310002---4101
Q gi|254780943|r 323 ------DVSSEFRY-------RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES---DFIF 386 (608)
Q Consensus 323 ------~~asEf~y-------~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a---D~~i 386 (608)
-++.+|.| -+.+-.++|+.++||-||.|.+++.|++.||++|.+||++|..-|-.|+..+ |.-|
T Consensus 80 D~S~Ltai~NDygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l 159 (186)
T TIGR00441 80 DISILTAIANDYGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVEL 159 (186)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 23532320011025678777766328898688874247670889999998845796699972178631133578886056
Q ss_pred C
Q ss_conf 3
Q gi|254780943|r 387 P 387 (608)
Q Consensus 387 ~ 387 (608)
-
T Consensus 160 ~ 160 (186)
T TIGR00441 160 R 160 (186)
T ss_pred E
T ss_conf 7
No 81
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.53 E-value=6.4e-06 Score=60.20 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HH---H-----HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH-HCCCCCH
Q ss_conf 279998759999999997---67---7-----4467798742036145521366449999999999997422-1144232
Q gi|254780943|r 431 LIRSLVEIPRKMFDVLQN---IY---S-----QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYL-HAEGYAA 498 (608)
Q Consensus 431 ~~~~L~~lp~~i~~~l~~---~~---~-----~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syi-haeg~~a 498 (608)
+.+++-.-|+.+.++|.. .. . ......+.+.+.++++++|+|.+|=.++=|.-=|.+++.+ +.+...+
T Consensus 332 MlKEI~EQP~ai~~tL~~~gri~~~~~~i~l~~l~~~~~~l~~i~rI~iVACGTSyhAglvaky~~E~la~i~~V~v~~a 411 (691)
T PTZ00295 332 TIKEIHEQPMTLSRSLNNGGRISDYNSRVKLGGLDPYKDELLKIENLILTGCGTSFYAALFAKYLMRYLSCFNTVQVMDA 411 (691)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 79998754999999997416646777705316751448998618859999854889999999999999539997689840
Q ss_pred HHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC--------CCCCHH
Q ss_conf 431446378807987189994480146889999999982798089995653210001346627986--------887815
Q gi|254780943|r 499 GELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL--------PSMGEI 570 (608)
Q Consensus 499 gE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i--------P~~~~~ 570 (608)
.||.--|+ .++++.+|++...+++.+ ++.++++.+.+|++++.|++-.+.......+. ++.+ +.+..+
T Consensus 412 sEf~~~~~--~~~~~lvI~ISQSGETAD-TLaALr~AK~~G~~tlaIvNv~gSsiaReaD~-~i~t~AGpEIgVASTKaF 487 (691)
T PTZ00295 412 IEINVSVL--PKEHAGVIFISQSGETRD-VIKACKLAEDLGIPKLSVVNSVGSTIARMTGC-GVYLNAGREVAVASTKAF 487 (691)
T ss_pred HHHCCCCC--CCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCHHHEECCE-EEEECCCCEEEEEECHHH
T ss_conf 12014578--987753999757788567-99999999976993899954788725304463-268247764678704899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 6658999999999999999838-77988
Q gi|254780943|r 571 VSPIVFSLPIQMIAYCTAVLIG-TDVDQ 597 (608)
Q Consensus 571 l~pl~~~iplQllAy~~A~~~G-~dpD~ 597 (608)
...++.|.+||.++|..|| ++++.
T Consensus 488 ---tsQl~~L~llal~la~~~~~l~~~~ 512 (691)
T PTZ00295 488 ---SSQVSVLSLIANWFAQHRKGISSGK 512 (691)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf ---9999999999999998608987899
No 82
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=98.51 E-value=1.5e-05 Score=57.54 Aligned_cols=137 Identities=26% Similarity=0.269 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC---HHHHCCCCEEEEEECCCHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463---788079871899944801468
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP---IALITEGTFVIAIAPYDRFFQ 526 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP---~ali~~~~~vi~i~~~~~~~~ 526 (608)
.+.+.+.++.+.++++++|+|.|.+.++|.+.+.||..+-. ++..++.. |++ .+.+.++..+|++.-.+.+.+
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~---~~~~~~~~~~~~~Dv~i~iS~sG~t~e 192 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDT---HGQLMQLALLTPGDVVIAISFSGYTRE 192 (281)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEECCC---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf 99999999999706957999648359999999999998199-66996684---179999983899988999848999689
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHH----HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999827980899956532100013466279868878--156----658999999999999999838
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIV----SPIVFSLPIQMIAYCTAVLIG 592 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l----~pl~~~iplQllAy~~A~~~G 592 (608)
++..++..+.+|+++|.||+..........+ .++.+|..+ .+- +-+.....+.+|...++..++
T Consensus 193 -~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad-~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~ 262 (281)
T COG1737 193 -IVEAAELAKERGAKVIAITDSADSPLAKLAD-IVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRG 262 (281)
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCCCHHHHCC-EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999997799299983999993666547-788712676322255607889999999999999998746
No 83
>PRK02947 hypothetical protein; Provisional
Probab=98.51 E-value=7.9e-07 Score=66.51 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEEC-----------CHH----------HCCCCCCCCCCEEEE
Q ss_conf 2356551035203654307999999998625667-314304-----------201----------001233445550577
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVS-----------SEF----------RYRDFVYSSKWASLF 343 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~a-----------sEf----------~y~~~~~~~~tlvI~ 343 (608)
.+++-..|++.|+|-| .+.+.=.|-+..++. +.+... |-+ ......+.+++++|.
T Consensus 37 si~~gg~i~~fGtGHS---~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g~a~~il~~~~i~~~Dvlii 113 (247)
T PRK02947 37 SIANGGRIYVFGTGHS---HMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEGYAKLILDRYPIRPGDVLII 113 (247)
T ss_pred HHHCCCEEEEECCCCH---HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 9975997999888516---4899987411476433130034110254786665312225509999998679999988999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCCCCCCCCCCCCCC----------CCCCHHHHH
Q ss_conf 526788189999999986302442465117876-----------31000241013674200----------110007888
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLES-----------TIARESDFIFPIKAGPE----------IGVASTKAF 402 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S-----------~la~~aD~~i~~~aG~E----------i~VasTKsf 402 (608)
+|.||..+-.+++...||++|+++|+||+...| .|...||.+|+-++-+- ..|+.|=|.
T Consensus 114 ~SnSG~N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN~~p~GDA~l~i~g~~~kvgp~STi 193 (247)
T PRK02947 114 VSNSGRNAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDNGAPKGDAVLEIEGLEAKVGPTSTV 193 (247)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEECCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 96787776899999999986996999966788167899897667115636678657999876589878977775757789
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780943|r 403 TCQLLVLVI 411 (608)
Q Consensus 403 taql~~l~l 411 (608)
++..++-.+
T Consensus 194 ~g~~i~n~i 202 (247)
T PRK02947 194 VGVAILNAI 202 (247)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 84
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=98.47 E-value=1.6e-05 Score=57.40 Aligned_cols=140 Identities=16% Similarity=0.269 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~ 529 (608)
++.++++++.+.+.+++++.|.|-+--+|...+.+|.-+.+ ..|..+|.-+.+ +.++-.+|++...+++.+ ++
T Consensus 20 ~~~i~~~~~~I~~a~~I~~~G~G~Sg~va~~~a~rl~~lG~---~~~~~~d~~~~~---i~~~Dv~I~iS~SG~T~~-~~ 92 (179)
T cd05005 20 EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGL---NVYVVGETTTPA---IGPGDLLIAISGSGETSS-VV 92 (179)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC---CEEEECCCCCCC---CCCCCEEEEECCCCCCHH-HH
T ss_conf 99999999999749948999856258779999999973598---012435655577---999999999819999568-99
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC--------CHHHHH------HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999982798089995653210001346627986887--------815665------8999999999999999838779
Q gi|254780943|r 530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM--------GEIVSP------IVFSLPIQMIAYCTAVLIGTDV 595 (608)
Q Consensus 530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~--------~~~l~p------l~~~iplQllAy~~A~~~G~dp 595 (608)
..++-.|.+|++++.||...+.......+ .++.+|.. .+-++| -...+.+-.+++.+...+|+++
T Consensus 93 ~~~~~aK~~ga~iI~IT~~~~S~la~~aD-~~l~ip~~~~~~~~~~~~s~~pm~s~~e~~~l~~~Dal~~~lm~~~~~~~ 171 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAKLAD-VVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVSE 171 (179)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999998799199997989997899589-99981874313888898765757759999999999999999999809899
Q ss_pred CC
Q ss_conf 88
Q gi|254780943|r 596 DQ 597 (608)
Q Consensus 596 D~ 597 (608)
+.
T Consensus 172 ~~ 173 (179)
T cd05005 172 EE 173 (179)
T ss_pred HH
T ss_conf 99
No 85
>PRK13937 phosphoheptose isomerase; Provisional
Probab=98.46 E-value=1e-06 Score=65.78 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEECCCCCCHHH-HHHHHHHHHC----CCCCEEE---------ECCHHHC-------CCCCCCCCCEEEEE
Q ss_conf 235655103520365430799-9999998625----6673143---------0420100-------12334455505775
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGL-VGKFWFERLA----RLKVEID---------VSSEFRY-------RDFVYSSKWASLFI 344 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~----~i~v~v~---------~asEf~y-------~~~~~~~~tlvI~i 344 (608)
.+++-.+|++.|.|.|-..|. .+.-+..++. ++|+-.- .+.++.| -.....+++++|++
T Consensus 38 ~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~if~~ql~~~~~~gDili~i 117 (192)
T PRK13937 38 ALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYERVFARQVEALGRPGDVLIGI 117 (192)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99879989999686318889999999964135578985357767882877764277878999999999557889889997
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 267881899999999863024424651178763100024101367
Q gi|254780943|r 345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
|-||.|..+++|++.||++|.+++++|...+..+...+|..+.+.
T Consensus 118 S~SGnS~Nii~A~~~A~~~g~~~i~ltG~~gg~l~~~~D~~i~vp 162 (192)
T PRK13937 118 STSGNSPNVLAALEKARELGMTTIGLTGRDGGKMKELCDLLLIVP 162 (192)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEC
T ss_conf 799999799999999998799799998889605788399899958
No 86
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=98.44 E-value=3.1e-06 Score=62.37 Aligned_cols=323 Identities=20% Similarity=0.228 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHC--CCCCHHCCCHHHHHHHHHHH-HCH---HHHH
Q ss_conf 37620111110379827651889730574100333222100011000--12100001407899999974-178---9999
Q gi|254780943|r 191 SDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQ--IAPFLIGKGNYRHFMEKEIY-EQP---EAIS 264 (608)
Q Consensus 191 Sd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~--~~~~~~~kg~y~hfm~kEI~-EQP---~~l~ 264 (608)
||.+|= +|++ +.|+|+.+.++=|+=|..=+++.+.+=.... -|.|-+ .|=..++.. +.- ++++
T Consensus 83 t~~NAH-PH~d-----~~g~iaVVHNGIIENy~~Lr~eL~~~G~~F~S~TDTEVI-----aHLie~~~~~~~~~L~~A~~ 151 (628)
T TIGR01135 83 TDENAH-PHTD-----EGGRIAVVHNGIIENYAELREELEARGHVFSSDTDTEVI-----AHLIEEELRQEGGDLLEAVQ 151 (628)
T ss_pred CCCCCC-CCCC-----CCCCEEEEECCEECCCHHHHHHHHHCCCEEEECCCCCHH-----HHHHHHHHCCCCCHHHHHHH
T ss_conf 877888-7226-----995279997782705488998998489289713674048-----88988984178841899999
Q ss_pred HHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH----HCCCC--CCCCC
Q ss_conf 9871574766452111100002356551035203654307999999998625667314304201----00123--34455
Q gi|254780943|r 265 RVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF----RYRDF--VYSSK 338 (608)
Q Consensus 265 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf----~y~~~--~~~~~ 338 (608)
+++.... ....+ -+ ....+.++|++-=.||..=.|+.| .-+.+.||+- .|... .+.++
T Consensus 152 ~~~~~L~--G~YA~--a~--~~~~~P~~l~~AR~~SPLi~Gl~G----------~gE~F~ASD~~All~~T~~~~~L~dG 215 (628)
T TIGR01135 152 KALKQLR--GAYAL--AV--LHADHPETLVAARSGSPLIVGLVG----------DGENFVASDVTALLPYTRRVIYLEDG 215 (628)
T ss_pred HHHHHHC--CCEEE--EE--EECCCCCEEEEEECCCCEEEEEEC----------CCCEEEECCHHHHHHHCCEEEEECCC
T ss_conf 9987626--62579--99--831889659999637876888835----------71269833827887327889995068
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EEC--CCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5057752678818999999998630244246-511--7876310002-41013674200110007888999999999999
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGS-LVN--VLESTIARES-DFIFPIKAGPEIGVASTKAFTCQLLVLVIMAI 414 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tia-ItN--~~~S~la~~a-D~~i~~~aG~Ei~VasTKsftaql~~l~llal 414 (608)
++++ +|+- -+. |.| ..+.+..|.. -..+.+..
T Consensus 216 d~a~-~~~d-------------------~~~~i~n~~~~g~~~~r~~R~~~~~~~~------------------------ 251 (628)
T TIGR01135 216 DIAI-LTKD-------------------GVREIYNIFLEGAPVSREVRVEVIDWDL------------------------ 251 (628)
T ss_pred CEEE-EECC-------------------CEEEEEECCCCCCCCCCCCCEEEEECCH------------------------
T ss_conf 8899-8048-------------------6589972156787302234415861656------------------------
Q ss_pred HHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 97762120015776322-799987599999999976774467----------7987420361455213664499999999
Q gi|254780943|r 415 YAGKVRGYINEEQEREL-IRSLVEIPRKMFDVLQNIYSQIEK----------LCCGLAKCQTLLYVGRGSSYPLALEGAL 483 (608)
Q Consensus 415 ~l~~~~g~i~~~~~~~~-~~~L~~lp~~i~~~l~~~~~~i~~----------~a~~~~~~~~~~~lG~G~~y~~A~EgAL 483 (608)
. ...+..|+-+ .+++-.-|..+.++|...-..-.. ....+.+.+++.++++|-+|=.+|=|-=
T Consensus 252 ~------~aeKggy~HfMlKEIyEQP~a~~~tL~~~~~~~~~~~~~~l~~~~~~~~l~~~~~I~IvACGTSYHAGLv~kY 325 (628)
T TIGR01135 252 D------AAEKGGYRHFMLKEIYEQPRALRDTLEGRLEEEGGVDLEELGADLAEELLKNIDRIQIVACGTSYHAGLVAKY 325 (628)
T ss_pred H------HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 7------6347886563424226768999999987621576145112675211234315556899954016889999999
Q ss_pred HHHHHHHHHCCCCCHHHCC--CCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCC
Q ss_conf 9999742211442324314--4637880798718999448014688999999998279--80899956532100013466
Q gi|254780943|r 484 KIKEISYLHAEGYAAGELK--HGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG--GRVIFITDEEGLKRQDFPSI 559 (608)
Q Consensus 484 KlkE~syihaeg~~agE~k--HGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg--~~vi~I~~~~~~~~~~~~~~ 559 (608)
=|-..+-|+++---|-||| +.+ +++++.+|+|...++|.+ |+.+++..|+|| ++++.|+|-.+.......+
T Consensus 326 ~iE~lA~iPv~Ve~ASEfRYr~~~---~~~~~L~I~ISQSGETAD-TL~ALr~aK~~G~~~~~L~IcNv~gS~l~Re~D- 400 (628)
T TIGR01135 326 LIERLAGIPVEVEVASEFRYRKPV---VDKKTLVIAISQSGETAD-TLEALRLAKELGLYAKTLGICNVPGSTLTREAD- 400 (628)
T ss_pred HHHHHCCCCCEEEEECCEEECCCC---CCCCCEEEEEECCCCHHH-HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH-
T ss_conf 999861897289984120013677---588765999974861088-999999998479851589998368753357877-
Q ss_pred CEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27986---8878--156658999999999999999838779
Q gi|254780943|r 560 ETIVL---PSMG--EIVSPIVFSLPIQMIAYCTAVLIGTDV 595 (608)
Q Consensus 560 ~~i~i---P~~~--~~l~pl~~~iplQllAy~~A~~~G~dp 595 (608)
.++.. |+.. .=-+-...++.|++||-.+|..||..-
T Consensus 401 ~~L~t~AGpEIGVAsTKaFt~Ql~~L~~L~~~~a~~~g~~~ 441 (628)
T TIGR01135 401 HTLYTRAGPEIGVASTKAFTAQLTVLYLLALALAKARGTLS 441 (628)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87765069711145458899999999999999998537555
No 87
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.42 E-value=2.4e-06 Score=63.19 Aligned_cols=129 Identities=14% Similarity=0.226 Sum_probs=94.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHH-HHHHHHHCC
Q ss_conf 35655103520365430799999999862566731430420100123-3445550577526788189999-999986302
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLA-SLRYMRTQG 364 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~-Al~~ak~~g 364 (608)
+...++++++|+|.+|=.|+=++--|...+.+++..+.+.||++.+. .+++++.||++...|.+.+... .++..+++|
T Consensus 10 ~~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~ 89 (153)
T cd05009 10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARG 89 (153)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 84788089994897889999999999999899832676888713739986689867998144378888999999999659
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY 422 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~ 422 (608)
+.++.|++..+. ....|..+.+..-++ .-+-...++.+.+||.+++..+|.
T Consensus 90 ~~v~~i~~~~~~--~~~~~~~~~~p~~~~-----~~~~~~~~i~~Q~la~~~a~~~G~ 140 (153)
T cd05009 90 AKVIVITDDGDA--KDLADVVIRVPATVE-----ELSPLLYIVPLQLLAYHLAVARGI 140 (153)
T ss_pred CEEEEEECCCCC--CCCCCEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 849999778643--455761687899727-----889999999999999999998097
No 88
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.40 E-value=7e-06 Score=59.94 Aligned_cols=131 Identities=23% Similarity=0.159 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r 452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN 531 (608)
Q Consensus 452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~ 531 (608)
.+++.++.+.+++++++.|.|.++.+|.+.+.||..+- .+++-++..+..+.....++++..+|++...++. ..++..
T Consensus 2 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~-~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLG-KPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEA 79 (139)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHH
T ss_conf 79999999975992899980815999999999972589-8279879627788887459999999997686363-789999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 9999827980899956532100013466279868878--15665899999999999
Q gi|254780943|r 532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIVSPIVFSLPIQMIAY 585 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l~pl~~~iplQllAy 585 (608)
++..+.+|++++.||+.......+..+ ..+.+|... .-..++...+|.+.+.-
T Consensus 80 ~~~ak~~g~~ii~IT~~~~s~l~~~ad-~~l~~~~~~~~~~~~~~~s~~~~~~l~d 134 (139)
T cd05013 80 AEIAKERGAKVIAITDSANSPLAKLAD-IVLLVSSEEGDFRSSAFSSRIAQLALID 134 (139)
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998699799997999997799699-9998288655577688499999999999
No 89
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=98.39 E-value=1.7e-05 Score=57.34 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHH
Q ss_conf 74467798742036145521366449999999999997422114423243144637880798718999448014688999
Q gi|254780943|r 451 SQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLS 530 (608)
Q Consensus 451 ~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s 530 (608)
+.+++..+.+.+++++++.|.|-+..+|...+.||.-+.+ ..|..++..+++ +.++..+|++...+++.+ ++.
T Consensus 18 ~~i~~~v~~I~~a~~I~v~G~G~Sg~ia~~~a~rL~~~G~---~~~~~~d~~~~~---i~~~Dv~I~iS~SGeT~e-~~~ 90 (179)
T TIGR03127 18 EELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGF---NVYVVGETTTPS---IKKGDLLIAISGSGETES-LVT 90 (179)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC---EEEEECCCCCCC---CCCCCEEEEECCCCCCHH-HHH
T ss_conf 9999999999739909999955439999999999985197---579976444466---999999999819999689-999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC---C--H---HHHHHH------HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999982798089995653210001346627986887---8--1---566589------999999999999998387798
Q gi|254780943|r 531 NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM---G--E---IVSPIV------FSLPIQMIAYCTAVLIGTDVD 596 (608)
Q Consensus 531 ~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~---~--~---~l~pl~------~~iplQllAy~~A~~~G~dpD 596 (608)
.++..|.+|++++.||...+....+..+ .++.+|.. + . -+.|.- ..+.+..+++.+...||.+++
T Consensus 91 ~~~~aK~~ga~ii~IT~~~~S~Lak~aD-~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~Dal~~~l~~~~~~~~~ 169 (179)
T TIGR03127 91 VAKKAKEIGATVAAITTNPESTLGKLAD-VVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLDEE 169 (179)
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHCC-EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999998799299997989897799499-999906865457778856668667499999999999999999998198999
Q ss_pred C
Q ss_conf 8
Q gi|254780943|r 597 Q 597 (608)
Q Consensus 597 ~ 597 (608)
.
T Consensus 170 ~ 170 (179)
T TIGR03127 170 E 170 (179)
T ss_pred H
T ss_conf 9
No 90
>PRK13936 phosphoheptose isomerase; Provisional
Probab=98.34 E-value=5.5e-06 Score=60.64 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHHH----CCCCCEEE---------ECCHHHCC-------CCCCCCCCEEEEEC
Q ss_conf 35655103520365430799-999999862----56673143---------04201001-------23344555057752
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGL-VGKFWFERL----ARLKVEID---------VSSEFRYR-------DFVYSSKWASLFIS 345 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~----~~i~v~v~---------~asEf~y~-------~~~~~~~tlvI~iS 345 (608)
+++-.+|++.|.|.|..-|. .+..++.++ -++|+-.. .+.++.|. .....+++++|++|
T Consensus 40 ~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~g~~~vf~rQl~a~~~~gDili~iS 119 (197)
T PRK13936 40 LLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDYSYNEVFSKQVRALGQPGDVLLAIS 119 (197)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 98799899996878999999999998665412788875576436740110102787899999999998389999899996
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCCC
Q ss_conf 678818999999998630244246511787631000---2410136
Q gi|254780943|r 346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARE---SDFIFPI 388 (608)
Q Consensus 346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~---aD~~i~~ 388 (608)
-||.+..+++|++.||++|.+|+++|...+..+... +|..+-+
T Consensus 120 ~SGnS~Nii~A~~~A~~~g~~~i~ltG~dgg~l~~l~~~~Di~i~v 165 (197)
T PRK13936 120 TSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV 165 (197)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEEC
T ss_conf 9999989999999999859959999816853567525668989981
No 91
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=98.30 E-value=8e-05 Score=52.56 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~ 529 (608)
.+.+++.++.+.+++++++.|.|.+.++|.+...||..+- .++..+.-.-+..-..+..+++..+|+|.-.+.+.+ ++
T Consensus 115 ~~~l~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~r~g-~~~~~~~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e-~i 192 (284)
T PRK11302 115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFN-VPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKS-LV 192 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHH-HH
T ss_conf 9999999999971895899964850999999999998439-814642878999999971999888999737999879-99
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 999999827980899956532100013466279868
Q gi|254780943|r 530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP 565 (608)
Q Consensus 530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP 565 (608)
..++..+.+|+++|.||+. ........ +.++.++
T Consensus 193 ~~~~~Ak~~ga~vIaIT~~-~SpLa~~A-D~~L~~~ 226 (284)
T PRK11302 193 ELAQLARENGATVIGITAA-GSPLAREA-TLALTLD 226 (284)
T ss_pred HHHHHHHHCCCCEEEECCC-CCHHHHHC-CEEEEEC
T ss_conf 9999999879958997799-98148868-9889846
No 92
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.28 E-value=8.2e-06 Score=59.45 Aligned_cols=120 Identities=25% Similarity=0.276 Sum_probs=88.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r 465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
+++|+|+|.+|-.|+-++.=|...+.++++.+++.||.|.+. .+++++.+|++...+++.+ ++..++..+.+|++++.
T Consensus 1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvI~iS~SG~t~e-~i~a~~~a~~~g~~~i~ 78 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGETAD-TLAALRLAKEKGAKTVA 78 (126)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCC-CCCCCCEEEEECCCCCCCC-HHHHHHHHHHCCCCEEE
T ss_conf 999999617999999999999997299889986067554478-8999859999868979800-78899999982994898
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 956532100013466279868878156-----6589999999999999
Q gi|254780943|r 545 ITDEEGLKRQDFPSIETIVLPSMGEIV-----SPIVFSLPIQMIAYCT 587 (608)
Q Consensus 545 I~~~~~~~~~~~~~~~~i~iP~~~~~l-----~pl~~~iplQllAy~~ 587 (608)
||+..+.......+ ..+.++.-+|.- +-...+..++++|.++
T Consensus 79 iT~~~~S~la~~ad-~~i~~~~g~E~~~~~Tks~t~~~~~l~lla~~~ 125 (126)
T cd05008 79 ITNVVGSTLAREAD-YVLYLRAGPEISVAATKAFTSQLLALLLLALAL 125 (126)
T ss_pred EECCCCCHHHHHCC-EEEECCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 70699997899689-879869877678708699999999999999986
No 93
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=9.8e-05 Score=51.95 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=64.8
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 74203614552136644999999999999742211442324314463788079871899944801468899999999827
Q gi|254780943|r 459 GLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTR 538 (608)
Q Consensus 459 ~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~ar 538 (608)
.+.+.++++++++|.+|-.++=+.-=|.+.+-++++--.+.||+=-... +.+++.+|+|...+++.+ ++.++++.+.+
T Consensus 279 ~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~-~~~~~L~I~ISQSGETaD-Tl~ALr~ak~~ 356 (597)
T COG0449 279 ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPA-LNPNTLVIAISQSGETAD-TLAALRLAKEQ 356 (597)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCC-CCCCCEEEEECCCCCCHH-HHHHHHHHHHC
T ss_conf 3345026999977688899999999999984898189963434552657-887857999826765378-99999999974
Q ss_pred CCEEEEEECCCCCCCCCCCCCCEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9808999565321000134662798688781-----56658999999999999999838
Q gi|254780943|r 539 GGRVIFITDEEGLKRQDFPSIETIVLPSMGE-----IVSPIVFSLPIQMIAYCTAVLIG 592 (608)
Q Consensus 539 g~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~-----~l~pl~~~iplQllAy~~A~~~G 592 (608)
|++++.|++..+.......+ ..+.+..-+| --+.-..++.|.+||.++|..+|
T Consensus 357 G~~tlaItNv~gSti~Resd-~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g 414 (597)
T COG0449 357 GAKTLAITNVPGSTIARESD-HTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRG 414 (597)
T ss_pred CCCEEEEEECCCCHHHCCCC-EEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99789998158983214454-07775467733243333589999999999999767617
No 94
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=98.22 E-value=6.9e-05 Score=53.02 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~ 529 (608)
.+.+++.++.+.+++++++.|.|.++.+|.+.+.||..+- +.+..+.-..+..--.+.++++..+|+|.-.+.+.+ ++
T Consensus 128 ~~~i~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~rlG-~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e-~i 205 (293)
T PRK11337 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG-VRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSD-VK 205 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHH-HH
T ss_conf 9999999999982797089985726999999999999859-804764777899999971899988999818999889-99
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 99999982798089995653210001346627986887
Q gi|254780943|r 530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM 567 (608)
Q Consensus 530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~ 567 (608)
..++..|.||+++|.||+.......... +.++..|..
T Consensus 206 ~~~~~Ak~~Ga~vI~IT~~~~SpLa~~a-D~vL~~~~~ 242 (293)
T PRK11337 206 AAVELAKQNGAKIICITHSYHSPIAKLA-DYIICSPAP 242 (293)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHC-CEEEECCCC
T ss_conf 9999999879949997699998468958-998864887
No 95
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=98.18 E-value=1.6e-05 Score=57.37 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCCCCCEEEEECCCCCCHHH-HHHHHHHHHC----CCCCEEE---------ECCHHHCCC-------CCCCCCCEEEEE
Q ss_conf 235655103520365430799-9999998625----6673143---------042010012-------334455505775
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGL-VGKFWFERLA----RLKVEID---------VSSEFRYRD-------FVYSSKWASLFI 344 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal-~~~~~~e~~~----~i~v~v~---------~asEf~y~~-------~~~~~~tlvI~i 344 (608)
.+.+-.+|++.|.|.|.--|. .+..++.++- ++|+-.- .+.+|.|.+ ..-.+++++|++
T Consensus 37 ~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~~~vF~rQl~alg~~gDiLi~i 116 (196)
T PRK10886 37 SLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAI 116 (196)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99879979998684748899999999964655689884056632670565431166779999999999856799989999
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCC
Q ss_conf 2678818999999998630244246511787631000---241013
Q gi|254780943|r 345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARE---SDFIFP 387 (608)
Q Consensus 345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~---aD~~i~ 387 (608)
|-||.+.++++|++.||++|.+++++|...+..+... +|..|.
T Consensus 117 StSGnS~Nii~Ai~~A~~~g~~~i~ltG~~gg~l~~l~~~~Di~I~ 162 (196)
T PRK10886 117 STRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEE
T ss_conf 4899998999999999988998999976886236651576798998
No 96
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.17 E-value=4e-06 Score=61.65 Aligned_cols=132 Identities=19% Similarity=0.367 Sum_probs=92.4
Q ss_pred CC--EE-ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75--02-388999976815068999899997898897247615678887634--32001026779999998875122201
Q gi|254780943|r 86 HP--HC-IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKF--IKNGSSKKETMQKLMQCLTGSYSIAV 160 (608)
Q Consensus 86 hP--~~-~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~--~~~~~~~~~ai~~~~~~l~G~ya~~i 160 (608)
|| ++ ..+|-.+.-|.|+|-..||+.+.. |.+-.|++. .||.| +++.+... -..++++|+|+|||++
T Consensus 63 ~pR~F~~~DdIfClF~G~LdNl~~L~qqYGL------sK~aNE~~~-vIEAYrtLRDRgPYP--adqVv~dL~G~FAFVl 133 (224)
T cd01910 63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQYGL------SKTANEAML-VIEAYRTLRDRGPYP--ADQVVKDLEGSFAFVL 133 (224)
T ss_pred CCCCEECCCCEEEEEECCHHHHHHHHHHHCC------CCCCCEEEE-HHHHHHHHHCCCCCC--HHHHHHHCCCCEEEEE
T ss_conf 7621011178799986633338889998673------666543646-287787641479998--8999975477279999
Q ss_pred HCCCCCCEEEEEEC--CC-CEEEECCC-CCEEEECCCCCCCCCC-CEEEECCCCEEEEEECCCCEECCCCCCC
Q ss_conf 00468723899974--99-60776089-6136613762011111-0379827651889730574100333222
Q gi|254780943|r 161 IFEDDPHSIIVARK--GP-PLIIGHGE-GEMFVGSDVTALTLLT-DKVTYMEDGDWAIIRNSGLTIYDSQGYE 228 (608)
Q Consensus 161 l~~~~p~~i~~ar~--gs-PL~iG~~~-~~~~vaSd~~al~~~t-~~~~~L~dgei~~i~~~~~~i~~~~~~~ 228 (608)
.+... +++|+||. |+ ||++|+.. +..++|+|.-.+.+-+ +.+-.-+.|.+.. +..+...|.--..+
T Consensus 134 yD~~~-~t~f~A~D~~G~vPLywG~~aDGsv~~Sdd~~~lk~~C~ksfapFP~Gc~f~-S~gGL~sfehP~nk 204 (224)
T cd01910 134 YDKKT-STVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFH-SEGGLRSFEHPMNK 204 (224)
T ss_pred EECCC-CEEEEEECCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCEEE-CCCCEEECCCCHHH
T ss_conf 97788-8199986789973217988688559995568888754511248899984176-68650204173621
No 97
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=98.11 E-value=0.00016 Score=50.50 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH---HHHCCCCEEEEEECCCHHHH
Q ss_conf 774467798742036145521366449999999999997422114423243144637---88079871899944801468
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI---ALITEGTFVIAIAPYDRFFQ 526 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~---ali~~~~~vi~i~~~~~~~~ 526 (608)
.+.+.+.++.+.+++++++.|.|.+.++|.+.+.||..+. +++..+.-. |..+ +.++++..+|++.-.+++.+
T Consensus 119 ~~~l~~av~~i~~A~~I~i~G~G~S~~vA~~~~~kl~rig-~~~~~~~d~---~~~~~~~~~l~~~Dv~I~iS~sG~t~~ 194 (282)
T PRK11557 119 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIG-INAVAERDM---HALLATVQALSPDDLLLAISYSGERRE 194 (282)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC-CCEEECCCH---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf 9999999999964895899970436999999999999809-963740886---899999981899998999859999789
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 89999999982798089995653210001346627986887
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM 567 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~ 567 (608)
++..++..+.+|+++|.||+..........+ .++.+|..
T Consensus 195 -~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD-~~L~~~~~ 233 (282)
T PRK11557 195 -LNLAADEALRVGGKVLAITGFTPNALQQRAS-HCLYTIAE 233 (282)
T ss_pred -HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC-EEEEECCC
T ss_conf -9999999998799399972989981588699-99984785
No 98
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.11 E-value=1.2e-05 Score=58.18 Aligned_cols=80 Identities=29% Similarity=0.350 Sum_probs=70.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC-HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 4552136644999999999999742211442324314463-788079871899944801468899999999827980899
Q gi|254780943|r 466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP-IALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 466 ~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP-~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
++++|.|.+..+|++.+.||.++..+++.++...++.|++ .++.+++.+++++...+++.| +...+++.+.+|++++.
T Consensus 1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e-~~~~~~~ak~~g~~vi~ 79 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEE-LLAALEIAKELGIPVIA 79 (87)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf 99997175699999999998751494179989528777646513789998999979979889-99999999987998999
Q ss_pred EE
Q ss_conf 95
Q gi|254780943|r 545 IT 546 (608)
Q Consensus 545 I~ 546 (608)
||
T Consensus 80 IT 81 (87)
T cd04795 80 IT 81 (87)
T ss_pred EE
T ss_conf 83
No 99
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=0.00023 Score=49.35 Aligned_cols=110 Identities=18% Similarity=0.071 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-----ECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65510352036543079999999986256673143-----0420100-12334455505775267881899999999863
Q gi|254780943|r 289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID-----VSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRT 362 (608)
Q Consensus 289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~-----~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~ 362 (608)
+++.|+.+|.|-|+-.+.++..++..+..-...+. .+.++.- -..+-++.++++.+|-||.|.||+.+.+.+|+
T Consensus 78 ~~~~iV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~ 157 (446)
T COG0166 78 KITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARK 157 (446)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 74439997875558999999998644046887459825788223467885268562799999589895889988999999
Q ss_pred CC-------CCEEEEECCCCCCCCCCCC------CCCCCCCCCCCCCCH
Q ss_conf 02-------4424651178763100024------101367420011000
Q gi|254780943|r 363 QG-------LTIGSLVNVLESTIARESD------FIFPIKAGPEIGVAS 398 (608)
Q Consensus 363 ~g-------~~tiaItN~~~S~la~~aD------~~i~~~aG~Ei~Vas 398 (608)
.. .+..+.|....+.++++++ ..++=..|+-.||.|
T Consensus 158 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~S 206 (446)
T COG0166 158 WLEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLS 206 (446)
T ss_pred HHHHHHHHHHCEEEEECCCCHHHHHHCCCCCEEEEECCCCCCCCCCHHH
T ss_conf 9986466451479998287157888617785038988788887104027
No 100
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=98.02 E-value=2.6e-05 Score=56.01 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=86.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCE---EEE--------CCHHH-----CCC-----CCCCCCCEEEE
Q ss_conf 235655103520365430799999999862566-731---430--------42010-----012-----33445550577
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARL-KVE---IDV--------SSEFR-----YRD-----FVYSSKWASLF 343 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i-~v~---v~~--------asEf~-----y~~-----~~~~~~tlvI~ 343 (608)
...+-.+|+..|||-|+-.+ .-.|-+-.|+ |+. +.+ +|-+. |.. .-+.++++.|.
T Consensus 34 si~n~g~i~~FG~GHShm~a---eEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~DVliv 110 (243)
T COG4821 34 SIMNDGRIYVFGSGHSHMLA---EEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPNDVLIV 110 (243)
T ss_pred HHHCCCEEEEECCCHHHHHH---HHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 98549879996486288999---999864378001132147716521352100045765317777899966887888999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCCCCCCCCCC----------CCCCCCCCHHHHH
Q ss_conf 526788189999999986302442465117876-----------3100024101367----------4200110007888
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLES-----------TIARESDFIFPIK----------AGPEIGVASTKAF 402 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S-----------~la~~aD~~i~~~----------aG~Ei~VasTKsf 402 (608)
+|.||.-+--+++.+++|++||+++++|...-| -|...+|.+++-+ +|-|+-|+.|-++
T Consensus 111 iSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~~ptSt~ 190 (243)
T COG4821 111 ISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKVGPTSTV 190 (243)
T ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHCHHCCCCHHHHHHHCCEEEECCCCCCCHHEEECCCCCCCCCCCHH
T ss_conf 80799898443899999865976999854543231110154156776521056517986662101354743323674026
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999977
Q gi|254780943|r 403 TCQLLVLVIMAIYAG 417 (608)
Q Consensus 403 taql~~l~llal~l~ 417 (608)
+.-+++-.+++-.+.
T Consensus 191 ~g~~ilqa~faeai~ 205 (243)
T COG4821 191 SGVTILQATFAEAIE 205 (243)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 101
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.98 E-value=0.00014 Score=50.78 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=90.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCC-CHH-HHHHHHHHHH--CCC
Q ss_conf 035203654307999999998625--66731430420100123-3445550577526788-189-9999999863--024
Q gi|254780943|r 293 LLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGE-TAD-TLASLRYMRT--QGL 365 (608)
Q Consensus 293 I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGe-T~d-ti~Al~~ak~--~g~ 365 (608)
|+|+|+|..|-.|+=++-=+.+++ -+.+....+.||++.+. .+++++.+|++-.+++ +.. ....++..|. .++
T Consensus 1 vv~LGrG~~y~iA~EgALKlKEis~~yihae~ys~~e~KHGPiALid~~tpvi~~~~~d~~~~~~~~~li~ei~~~~~~~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98980688638899999999998876777512461124657563216997189995388188887657999998226897
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 424651178763100024101367420011000788899999999999997762120
Q gi|254780943|r 366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGY 422 (608)
Q Consensus 366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~ 422 (608)
++++|++..+..+...+|..++.....+-.. -++. .++.+.|||.+++..+|.
T Consensus 81 ~ii~i~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~-~~iplQLlAy~~Av~rG~ 133 (151)
T cd05010 81 RVIAISPESDAGIEDNSHYYLPGSRDLDDVY---LAFP-YILYAQLFALFNSIALGL 133 (151)
T ss_pred EEEEEECCCCCCCCCCCCEEEECCCCCCHHH---HHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 8999945886332356767964799875388---8899-999999999999998699
No 102
>KOG0399 consensus
Probab=97.97 E-value=0.00057 Score=46.64 Aligned_cols=213 Identities=19% Similarity=0.305 Sum_probs=128.3
Q ss_pred CCEEEEEECCCCHHHHHHH---HCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEEC------CHHHHHH
Q ss_conf 8929999458658998875---210347865446510454388997002675023889999768150------6899989
Q gi|254780943|r 39 DGKIQCVRAQGKLSELEKE---LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIE------NFSRLKK 109 (608)
Q Consensus 39 ~~~i~~~K~~g~i~~l~~~---~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~------N~~elr~ 109 (608)
.++--++|+.-+...|... +....++++.+|-|.|++|+--|++.-|||.. .+.|||.|- |...-|+
T Consensus 255 sn~TIVYKGql~~~ql~~yY~DL~N~~y~S~~AlvHsRFSTNTfPsWdrAQPmR----~l~HNGEINTlrGN~NwMraRE 330 (2142)
T KOG0399 255 SNQTIVYKGQLRPEQLYNYYPDLTNAEYKSHFALVHSRFSTNTFPSWDRAQPMR----FLAHNGEINTLRGNKNWMRARE 330 (2142)
T ss_pred CCCEEEEECCCCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCH----HHHCCCCEEEECCCHHHHHHHH
T ss_conf 575489804337899865241006554336010254201368898863105320----1221673111025166788777
Q ss_pred HHHHCC-----------CEEEECCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHH-----------HHHHH--HHH-----
Q ss_conf 999789-----------88972476156788876343200-1026779999998-----------87512--220-----
Q gi|254780943|r 110 EHFSSQ-----------QVFLTETDTEVIACLLEKFIKNG-SSKKETMQKLMQC-----------LTGSY--SIA----- 159 (608)
Q Consensus 110 ~l~~~g-----------~~f~s~tDsEvi~~li~~~~~~~-~~~~~ai~~~~~~-----------l~G~y--a~~----- 159 (608)
-+.+.+ +.=...+||-.+-+.++.....| .++.+|+--++.. .+-.| +-+
T Consensus 331 g~mks~~~~~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpW 410 (2142)
T KOG0399 331 GVMKSAVFKDELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPW 410 (2142)
T ss_pred HHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 76514201014563122346788731346679999998079782798987476977069987878889999986027888
Q ss_pred -----HHCCCCCCEEEEE---ECC-CC-EEEECCCCCEEEECCCCCCCCCCCEEE---ECCCCEEEEEECCCCEECCCCC
Q ss_conf -----1004687238999---749-96-077608961366137620111110379---8276518897305741003332
Q gi|254780943|r 160 -----VIFEDDPHSIIVA---RKG-PP-LIIGHGEGEMFVGSDVTALTLLTDKVT---YMEDGDWAIIRNSGLTIYDSQG 226 (608)
Q Consensus 160 -----il~~~~p~~i~~a---r~g-sP-L~iG~~~~~~~vaSd~~al~~~t~~~~---~L~dgei~~i~~~~~~i~~~~~ 226 (608)
+.|.+ ++-..| ||| .| =++=..++..++|||.-.+.-.-.++. -|.+|.+..++-..-++++.+.
T Consensus 411 DGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~g~v~dd~e 488 (2142)
T KOG0399 411 DGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTELGQVVDDKE 488 (2142)
T ss_pred CCCEEEEECC--CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEECHH
T ss_conf 8866898517--85454341357886403698319879995204555798799643167688718999843785876588
Q ss_pred CCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 221000110001210000140789999997417899999871
Q gi|254780943|r 227 YEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLS 268 (608)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~ 268 (608)
.+ + . .+...+|..|.-++|.+-.....+.+.
T Consensus 489 lK--~---r------is~~~py~~wl~~~~~~l~~~~~~~~~ 519 (2142)
T KOG0399 489 LK--K---R------ISSRRPYGSWLSENIILLKPIKDSVLS 519 (2142)
T ss_pred HH--H---H------HHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88--7---7------762186778888765530034443110
No 103
>KOG0573 consensus
Probab=97.96 E-value=7.6e-05 Score=52.71 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCEEEEEECCCHH-HHH-H-HHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 9669999725012-799-9-999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRESV-GER-L-FKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~~~-~~~-l-~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
|||||--+.+... ... + ......+..||+|..+=...+.....+.- .+++ =|-|
T Consensus 1 MCGI~~s~~~~~~l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f-----------------~~~v--L~lr---- 57 (520)
T KOG0573 1 MCGIFLSVDKDLALNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLF-----------------ESSV--LSLR---- 57 (520)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEE-----------------ECCE--EEEE----
T ss_conf 9358986347743211110468887860358971554642566606996-----------------1326--9984----
Q ss_pred CCCCCCCCCCEEE-CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 8997002675023-889999768150689998999978988972476156788876343200102677999999887512
Q gi|254780943|r 78 GLPNKENSHPHCI-EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 78 G~~~~~NahP~~~-~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
| -.-.|||.. .+..+-.||.|+|-. +-....||-.++.++... +.++++. ..++.++|.|
T Consensus 58 G---~~t~Qpvv~d~~~vfl~NGeIyn~~-----------~s~~~~d~~~l~~~l~~~-~e~~~Il----~~i~~~qGp~ 118 (520)
T KOG0573 58 G---YLTKQPVVEDDRYVFLFNGEIYNGE-----------KSDTLFDTDILAEELSNL-KESGDIL----DIIKSLQGPW 118 (520)
T ss_pred E---EECCCCEECCCCEEEEECCEECCCC-----------CCCCCCHHHHHHHHHHCC-CCCCCHH----HHHHHCCCCC
T ss_conf 2---2036841436644898555532577-----------763212689999997418-7653388----9987416872
Q ss_pred HHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEE
Q ss_conf 220100468723899974--9-9607760896136
Q gi|254780943|r 157 SIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMF 188 (608)
Q Consensus 157 a~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~ 188 (608)
|+++.+... +++|.-|. | ..|.++.....+-
T Consensus 119 ~~iyY~~~~-~~LyfgRD~~GRrSLly~~~~~~f~ 152 (520)
T KOG0573 119 AFIYYDVRS-DKLYFGRDDIGRRSLLYSLDPFNFS 152 (520)
T ss_pred EEEEEECCC-CEEEEECCCCCCEEEEEEECCCCEE
T ss_conf 599997047-6799831655630146774267336
No 104
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=97.91 E-value=0.00017 Score=50.33 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 356551035203654307999999998625667314-----30420100-123344555057752678818999999998
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYM 360 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~a 360 (608)
.+++++|+.+|.|-|+--..+..-++.........+ ..+.+|.. -.....++|++|.+|-||.|.||+...+..
T Consensus 55 ~~~~~~vV~IGIGGS~LG~~ai~~aL~~~~~~~~~i~F~~N~Dp~~~~~~l~~l~~~~TlfiViSKSgtT~ET~~~~~~~ 134 (409)
T PRK03868 55 KQAIKNIVVIGIGGSSLGVKAIYSMLKNKKQLKRELHFLDNTDPISINKTLKKINLEETLFIVISKSGTTIETISIFKYI 134 (409)
T ss_pred HCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 52498799982552889999999984120458974999848898999999960893517999985999838999999999
Q ss_pred HHC-------CCCEEEEECCCCCCCCCCCC
Q ss_conf 630-------24424651178763100024
Q gi|254780943|r 361 RTQ-------GLTIGSLVNVLESTIARESD 383 (608)
Q Consensus 361 k~~-------g~~tiaItN~~~S~la~~aD 383 (608)
.+. .-..++||. ++|+|.+.++
T Consensus 135 ~~~~~~~~~~~~~~i~iTd-~~s~L~~~a~ 163 (409)
T PRK03868 135 LEHFKLDKLELKNFLVITD-PDSPLEQFAK 163 (409)
T ss_pred HHHHCCCCCCCCCEEEEEC-CCHHHHHHHH
T ss_conf 9972455330025799936-8416665444
No 105
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.84 E-value=0.00033 Score=48.29 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=81.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r 465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
+++|.|-|.+..+|.+.+-||.-+- +++-.+...+.-|+-+.++.++..+|++...+++.| ++..++..+.+|++++.
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r~G-~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e-~~~~~~~ak~~g~~vI~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTG-TPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE-LLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCC-CCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf 4999942679999999999999579-945754731555411347789999999979999867-99999999863785899
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCH
Q ss_conf 9565321000134662798688781
Q gi|254780943|r 545 ITDEEGLKRQDFPSIETIVLPSMGE 569 (608)
Q Consensus 545 I~~~~~~~~~~~~~~~~i~iP~~~~ 569 (608)
||+..+....+..+ .++.+|..+|
T Consensus 80 iT~~~~S~La~~ad-~~l~~~~~eE 103 (128)
T cd05014 80 ITGNPNSTLAKLSD-VVLDLPVEEE 103 (128)
T ss_pred EECCCCCHHHHHCC-EEEECCCCCC
T ss_conf 98799996799689-8997799865
No 106
>pfam00342 PGI Phosphoglucose isomerase. Phosphoglucose isomerase catalyses the interconversion of glucose-6-phosphate and fructose-6-phosphate.
Probab=97.72 E-value=0.0004 Score=47.69 Aligned_cols=115 Identities=13% Similarity=-0.040 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 2356551035203654307999999998625667314-----30420100-12334455505775267881899999999
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRY 359 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ 359 (608)
.-+++++|+.+|-|-|+---..+-..++.+..-+..+ ..+.+|.. -...-.++|++|.+|.||.|.||+...+.
T Consensus 92 ~g~~~~~vV~IGIGGS~LGp~~~~~AL~~~~~~~~~~~FvsN~Dp~~~~~~l~~ld~~~TlfiV~SKSf~T~ETl~n~~~ 171 (483)
T pfam00342 92 TGKAITDVVNIGIGGSDLGPRMVIEALKHYSENALIVFFVSNVDGTHIAEVLKKLNPETTLINVASKTFTTAETMTNARS 171 (483)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 89823438995656500769999999865336982289956898789999996089202599997788784779999999
Q ss_pred HHH----CC-------CCEEEEECCCCCCCCCCC--CCCC--CCCCCCCCCCCHHH
Q ss_conf 863----02-------442465117876310002--4101--36742001100078
Q gi|254780943|r 360 MRT----QG-------LTIGSLVNVLESTIARES--DFIF--PIKAGPEIGVASTK 400 (608)
Q Consensus 360 ak~----~g-------~~tiaItN~~~S~la~~a--D~~i--~~~aG~Ei~VasTK 400 (608)
+++ ++ -..++||.++........ +..+ +-..|--.||-|.-
T Consensus 172 ~~~wl~~~~~~~~~~~~h~vavT~~~~~a~~~g~~~~~if~~~d~VGGRfSv~SaV 227 (483)
T pfam00342 172 AREWLLKKLGEKSAVAKHFVALSTNAKKVEKFGIDPENMFAFWDWVGGRYSVWSAI 227 (483)
T ss_pred HHHHHHHHCCCHHHHHCEEEEECCCHHHHHHHCCCHHHEEECCCCCCCCEECCCCC
T ss_conf 99999983498553411489962888999974766641742554568832015755
No 107
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=97.67 E-value=0.0018 Score=43.15 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=58.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC-------CCCCEEEEECCCCCCHHHHHHHHHH----H
Q ss_conf 0352036543079999999986256673143042010012334-------4555057752678818999999998----6
Q gi|254780943|r 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVY-------SSKWASLFISQSGETADTLASLRYM----R 361 (608)
Q Consensus 293 I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~-------~~~tlvI~iSQSGeT~dti~Al~~a----k 361 (608)
.+|.|.|..+-+|+-.+.=+..-+++++.....-|.++.+... .++..+|.++-..+...+..-++.. +
T Consensus 192 piiyg~~~~~~vA~R~k~qlnEnak~~A~~~~~pE~nHneI~~~e~~~~~~~~~~~v~l~d~~d~~r~~~R~~~~~ei~~ 271 (328)
T PRK08674 192 PVIYGSGLTRPVAYRWKNQINENAKYPAFYNILPELNHNEIEGYERPQSLLRFVFVVILSDPLDHPRVKERVEITKEILG 271 (328)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 68996885579999999999887457623256631256500022366556775389995585537889999999999984
Q ss_pred HCCCCEEEEECCCCCCCCCCCC
Q ss_conf 3024424651178763100024
Q gi|254780943|r 362 TQGLTIGSLVNVLESTIARESD 383 (608)
Q Consensus 362 ~~g~~tiaItN~~~S~la~~aD 383 (608)
+++..+.-|-..-+|.|.|...
T Consensus 272 ~~~~~v~~i~~~g~s~L~rl~~ 293 (328)
T PRK08674 272 ASVIPVVEIDPRGNSPLARLLS 293 (328)
T ss_pred CCCCCEEEEECCCCCHHHHHHH
T ss_conf 3698569995899888999999
No 108
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=97.66 E-value=0.00018 Score=50.12 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-----EECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 56551035203654307999999998625667314-----304201001-233445550577526788189999999986
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI-----DVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRYMR 361 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v-----~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ak 361 (608)
+++++|+++|.|-|+-...+...++.....-+..+ ..+.++... ...-.++|++|.+|.||.|.||+...+.++
T Consensus 18 ~~~~~iv~iGiGGS~LG~k~l~~al~~~~~~~~~i~f~dn~Dp~~~~~~l~~l~~~~TlfiviSKSg~T~ETl~~~~~~~ 97 (158)
T cd05015 18 KKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLANARLAR 97 (158)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98886999814333899999999976245489569995799989999999727930149999759998689999999999
Q ss_pred H----C-----CCCEEEEECCCCCCCCCC
Q ss_conf 3----0-----244246511787631000
Q gi|254780943|r 362 T----Q-----GLTIGSLVNVLESTIARE 381 (608)
Q Consensus 362 ~----~-----g~~tiaItN~~~S~la~~ 381 (608)
+ + +...++||. ++|.+.+.
T Consensus 98 ~~l~~~~~~~~~~~~vaIT~-~~s~l~~~ 125 (158)
T cd05015 98 EWLEEAGGDDLAKHFVAITD-NGSGLLKK 125 (158)
T ss_pred HHHHHHCCHHHHHHEEEEEC-CCHHHHHH
T ss_conf 99998320355660789805-96699998
No 109
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=97.59 E-value=0.0018 Score=43.18 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-----EEEECCHHHCC-CCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 23565510352036543079999999986256673-----14304201001-2334455505775267881899999999
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKV-----EIDVSSEFRYR-DFVYSSKWASLFISQSGETADTLASLRY 359 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v-----~v~~asEf~y~-~~~~~~~tlvI~iSQSGeT~dti~Al~~ 359 (608)
.-+.++.|+.+|-|-|+---..+-..++.+..-+. +-..+.++... ...-.+.||+|.+|.||.|.||+...+.
T Consensus 126 tgk~i~~VV~IGIGGS~LGp~~~~~AL~~~~~~~~~i~FvsNvD~~~l~~~l~~ldpe~TLfiv~SKSftT~ETl~N~~~ 205 (525)
T PRK00179 126 TGKDITDVVNIGIGGSDLGPRAVIEALRPYFDNLLRVHFVSNVDPTYIAEVLKKLDPKTTLFIVISKSGTTTETATNFRI 205 (525)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHH
T ss_conf 89833438996656601769999999986466984179967888689999997289223389996698782889999999
Q ss_pred HHH----CC-------CCEEEEECCCCCCCCCCCC----CCCCC--CCCCCCCCCHH
Q ss_conf 863----02-------4424651178763100024----10136--74200110007
Q gi|254780943|r 360 MRT----QG-------LTIGSLVNVLESTIARESD----FIFPI--KAGPEIGVAST 399 (608)
Q Consensus 360 ak~----~g-------~~tiaItN~~~S~la~~aD----~~i~~--~aG~Ei~VasT 399 (608)
+|+ ++ -..++||.++...+....+ ..+++ ..|--.||-|.
T Consensus 206 a~~wl~~~~g~~~~~~~h~vavT~~~~~a~~~gi~~~~~~iF~~~d~VGGRySvwSa 262 (525)
T PRK00179 206 ARDWLLKKGGKELEAAKHFVAVTDNAKGALKFGIDEEGLETFPMWDWVGGRYSVLSA 262 (525)
T ss_pred HHHHHHHHCCCHHHHHHHEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCEECCCC
T ss_conf 999999837983436552556428857899826784424077565446773100341
No 110
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=97.56 E-value=0.00064 Score=46.31 Aligned_cols=98 Identities=20% Similarity=0.151 Sum_probs=63.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCCCEE---EECCHHHC-CCCCCCCCCEEEEECCCCCCH
Q ss_conf 235655103520365430799999999862----------5667314---30420100-123344555057752678818
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERL----------ARLKVEI---DVSSEFRY-RDFVYSSKWASLFISQSGETA 351 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~----------~~i~v~v---~~asEf~y-~~~~~~~~tlvI~iSQSGeT~ 351 (608)
..++++.|+.+|.|-||--+.++...+..+ .+..+.. ..+.++.. -...-.++|++|.+|.||.|.
T Consensus 68 ~~k~~~~vV~IGIGGS~LG~~a~~~aL~~~~~n~~~~~~~~~~~i~f~~NvDp~~l~~~l~~ld~~~TlfiViSKSgtT~ 147 (454)
T PRK00973 68 WIKNFENVVVLGIGGSALGNLALHTALLPLNYNELSKEERNGYRIFVLDNVDPEKTASILDVIDPKKTLFNVISKSGNTA 147 (454)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCH
T ss_conf 74789879995435367899999999500112310011168975999808998999999974793307999984897968
Q ss_pred HHHHHHHHHHH----CC----CCEEEEECCCCCCCCCCCC
Q ss_conf 99999999863----02----4424651178763100024
Q gi|254780943|r 352 DTLASLRYMRT----QG----LTIGSLVNVLESTIARESD 383 (608)
Q Consensus 352 dti~Al~~ak~----~g----~~tiaItN~~~S~la~~aD 383 (608)
||+...+.+|+ .| -+.+++|+...+.+...++
T Consensus 148 ETl~n~~~~r~~l~~~g~~~~~h~vaiT~~~~~~l~~~a~ 187 (454)
T PRK00973 148 ETLANYLIVRGLLEKYGLDPKKHLVFTTDPEKGELKKIAE 187 (454)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCCHHHHHHH
T ss_conf 9999999999999964956765657752675115677788
No 111
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.39 E-value=0.014 Score=36.96 Aligned_cols=140 Identities=11% Similarity=0.052 Sum_probs=77.3
Q ss_pred HHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 67798742036-14552136644999999999999742211442324314463788079871899944801468899999
Q gi|254780943|r 454 EKLCCGLAKCQ-TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNI 532 (608)
Q Consensus 454 ~~~a~~~~~~~-~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~ 532 (608)
.+..+.+.+++ ++++.|-|=+--+|+--|--|-- +..+|-=+++.|-.||-+-+|.++-.++++...+++.|- ...+
T Consensus 32 ~~av~~i~~~~G~vi~~GvGKSg~ia~KiaaTl~S-tGtps~f~hp~ea~HGDlG~i~~~D~~i~~S~SG~t~El-~~~~ 109 (321)
T PRK11543 32 VRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKEL-DLII 109 (321)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCCCEEECCCHHCCCCCCCCCCCCCEEEEEECCCCCHHH-HHHH
T ss_conf 99999998189988999276579999999999865-488654367011155665678789989999589881778-8772
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCC----CCHHHHHHHHHHH----HHHHHHHHHHHHCCCCC
Q ss_conf 9998279808999565321000134662798688----7815665899999----99999999998387798
Q gi|254780943|r 533 QEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPS----MGEIVSPIVFSLP----IQMIAYCTAVLIGTDVD 596 (608)
Q Consensus 533 ~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~----~~~~l~pl~~~ip----lQllAy~~A~~~G~dpD 596 (608)
.-++.+|.++|.|+...+.......+ -++.+|. ++--++|-..+.. .--||--+...||..++
T Consensus 110 ~~~k~~~~~ii~it~~~~S~Lak~sd-~~l~~~~~~Eacp~~LaPTtStt~~lalGDALAv~lm~~r~F~~~ 180 (321)
T PRK11543 110 PRLEDKSIALLAMTGKPTSPLGLAAK-AVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEE 180 (321)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 78876698689997899997688269-489726656666567775089999999988999999999599987
No 112
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=97.18 E-value=0.0016 Score=43.46 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=67.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH---HHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 356551035203654307999999998625667-31430420---100-1233445550577526788189999999986
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE---FRY-RDFVYSSKWASLFISQSGETADTLASLRYMR 361 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE---f~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak 361 (608)
-+.++++++.|||-|--|-.+...-|.+..+.| ..|...++ -+. ......++|++|..|+||.|.+|....++..
T Consensus 452 ~~g~t~vvl~GMGGSSLaPEVia~tf~~~~g~P~L~VLDSTDP~~V~a~~~~lDL~rTlfvVsSKSGsTvEt~s~~~~F~ 531 (950)
T PRK09533 452 AQGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTTEPNVFKDYFF 531 (950)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 66987699947873204099999872335799707996598989999998548955469999968988421399999999
Q ss_pred H----C------CCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCC
Q ss_conf 3----0------24424651178763100024101---367420011
Q gi|254780943|r 362 T----Q------GLTIGSLVNVLESTIARESDFIF---PIKAGPEIG 395 (608)
Q Consensus 362 ~----~------g~~tiaItN~~~S~la~~aD~~i---~~~aG~Ei~ 395 (608)
+ . |-+.++ +..|+|+|.+.+..-= -.++-|.||
T Consensus 532 ~~~~~a~G~~~~g~hfVa-VTDPGSpLek~A~~~g~~~vF~~dP~VG 577 (950)
T PRK09533 532 ARVKEVLGADKAGRHFVA-VTDPGSSLEKVAKEDGFAKIFHGDPSIG 577 (950)
T ss_pred HHHHHHHCCCCCCCEEEE-EECCCCHHHHHHHHCCCCEEECCCCCCC
T ss_conf 999874165680124899-9799977899999789806751797988
No 113
>PRK13937 phosphoheptose isomerase; Provisional
Probab=96.97 E-value=0.036 Score=34.16 Aligned_cols=142 Identities=20% Similarity=0.146 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HHHHHHCCCC--------------CHHH-
Q ss_conf 9999999767744677987420361455213664499999999999-----9742211442--------------3243-
Q gi|254780943|r 441 KMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----EISYLHAEGY--------------AAGE- 500 (608)
Q Consensus 441 ~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E~syihaeg~--------------~agE- 500 (608)
.++...+..+..++.+++.+.+-.++|++|.|-+-+.|.--+--|. |-..+++-+. ...+
T Consensus 20 ~~e~~~~~I~~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~i 99 (192)
T PRK13937 20 ALESLLAAIAKIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYERV 99 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHH
T ss_conf 99984999999999999999879989999686318889999999964135578985357767882877764277878999
Q ss_pred CCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 14463788079871899944801468899999999827980899956532100013466279868878156658999999
Q gi|254780943|r 501 LKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPI 580 (608)
Q Consensus 501 ~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~ipl 580 (608)
|..---++..++-.+|++.+.+.. +-++.+++..+.||.+++.++..++-...+.. +..+.+|..+...--=.-++.+
T Consensus 100 f~~ql~~~~~~gDili~iS~SGnS-~Nii~A~~~A~~~g~~~i~ltG~~gg~l~~~~-D~~i~vps~~~~~iee~H~~i~ 177 (192)
T PRK13937 100 FARQVEALGRPGDVLIGISTSGNS-PNVLAALEKARELGMTTIGLTGRDGGKMKELC-DLLLIVPSDDTPRIQEIHITIG 177 (192)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CEEEEECCCCCHHHHHHHHHHH
T ss_conf 999999557889889997799999-79999999999879979999888960578839-9899958998589999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780943|r 581 QMIA 584 (608)
Q Consensus 581 QllA 584 (608)
|.|.
T Consensus 178 H~lc 181 (192)
T PRK13937 178 HILC 181 (192)
T ss_pred HHHH
T ss_conf 9999
No 114
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.97 E-value=0.036 Score=34.14 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=88.3
Q ss_pred HHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHH
Q ss_conf 4467798742036-145521366449999999999997422114423243144637880798718999448014688999
Q gi|254780943|r 452 QIEKLCCGLAKCQ-TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLS 530 (608)
Q Consensus 452 ~i~~~a~~~~~~~-~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s 530 (608)
.+.+..+.+.+++ ++++.|-|=+--+|.--|--|-- +..+|--++..|-.||-+-++.++-.++++...+++.|- ..
T Consensus 35 ~f~~av~~i~~~kGkvi~~GvGKSg~ia~KiaaTl~S-tGtps~flhp~ea~HGDlG~i~~~D~~i~~S~SG~t~El-~~ 112 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEI-LA 112 (326)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHC-CCCCCEECCHHHCCCCCCCCCCCCCEEEEEECCCCCHHH-HH
T ss_conf 8999999998289988998386579999999999865-487515457434064655677789989999589875778-76
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC----CHHHHHHHHHHH----HHHHHHHHHHHHCCCCC
Q ss_conf 9999982798089995653210001346627986887----815665899999----99999999998387798
Q gi|254780943|r 531 NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM----GEIVSPIVFSLP----IQMIAYCTAVLIGTDVD 596 (608)
Q Consensus 531 ~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~----~~~l~pl~~~ip----lQllAy~~A~~~G~dpD 596 (608)
.+.-++.+|.++|.|+...+.......+ -++.+|.. +--++|-..+.. .--||--+...||..++
T Consensus 113 ll~~~~~~~~~iI~it~~~~S~l~~~sd-~~l~~~~~~Eacp~~laPTtStt~~lalgDala~~lm~~rgF~~~ 185 (326)
T PRK10892 113 LIPVLKRLHVPLICITGRPESSMARAAD-VHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAE 185 (326)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 4178776698589995699996688088-789657874466567775189999999998999999998499986
No 115
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.036 Score=34.10 Aligned_cols=103 Identities=21% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 03614552136644999999999999742211442324314463788079871899944801468899999999827980
Q gi|254780943|r 462 KCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGR 541 (608)
Q Consensus 462 ~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~ 541 (608)
...++++.|-|=+==+++--|-.|.-+- .+|-=...+|--||-.-+|.++-.+++|...+++.+ ..+.+.-.|.+|++
T Consensus 38 ~~gkv~V~G~GkSG~Igkk~Aa~L~s~G-~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~e-l~~~~~~aK~~g~~ 115 (202)
T COG0794 38 CKGKVFVTGVGKSGLIGKKFAARLASTG-TPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKE-LLNLAPKAKRLGAK 115 (202)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCC-CCEEEECCCHHCCCCCCCCCCCCEEEEEECCCCHHH-HHHHHHHHHHCCCC
T ss_conf 4884899868726899999999997359-955996673010377567898889999808971779-99999999975994
Q ss_pred EEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 89995653210001346627986887
Q gi|254780943|r 542 VIFITDEEGLKRQDFPSIETIVLPSM 567 (608)
Q Consensus 542 vi~I~~~~~~~~~~~~~~~~i~iP~~ 567 (608)
++.||..++.......+ -++.+|..
T Consensus 116 liaiT~~~~SsLak~aD-vvl~ip~~ 140 (202)
T COG0794 116 LIAITSNPDSSLAKAAD-VVLVIPVK 140 (202)
T ss_pred EEEEECCCCCHHHHHCC-EEEECCCC
T ss_conf 89995899986787468-69973674
No 116
>PRK02947 hypothetical protein; Provisional
Probab=96.74 E-value=0.054 Score=32.92 Aligned_cols=155 Identities=18% Similarity=0.129 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH----------
Q ss_conf 999999976774467----798742036145521366449999999999997422114423243144637----------
Q gi|254780943|r 441 KMFDVLQNIYSQIEK----LCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI---------- 506 (608)
Q Consensus 441 ~i~~~l~~~~~~i~~----~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~---------- 506 (608)
.++++.++..+.+++ +++.+.+-..+++-|.|-+.-+|+|..-.=--+..++.---+.--+.+||.
T Consensus 15 ll~~i~~~q~~~I~~Aa~~ia~si~~gg~i~~fGtGHS~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g 94 (247)
T PRK02947 15 LLERVRETQADAIKQAADLVADSIANGGRIYVFGTGHSHMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEG 94 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 99999999999999999999999975997999888516489998741147643313003411025478666531222550
Q ss_pred ---HH-----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----------CC----------CC
Q ss_conf ---88-----079871899944801468899999999827980899956532100-----------01----------34
Q gi|254780943|r 507 ---AL-----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKR-----------QD----------FP 557 (608)
Q Consensus 507 ---al-----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~-----------~~----------~~ 557 (608)
.+ +.++-.+|++...+. ..-.+-...+.|+||.+||+||+...... .+ -.
T Consensus 95 ~a~~il~~~~i~~~Dvlii~SnSG~-N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN~~p~ 173 (247)
T PRK02947 95 YAKLILDRYPIRPGDVLIIVSNSGR-NAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDNGAPK 173 (247)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEECCCCC
T ss_conf 9999998679999988999967877-768999999999869969999667881678998976671156366786579998
Q ss_pred CCCEEECCCCCH---HHHHHHHHHHHHHHHHHHH---HHHCCCCC
Q ss_conf 662798688781---5665899999999999999---98387798
Q gi|254780943|r 558 SIETIVLPSMGE---IVSPIVFSLPIQMIAYCTA---VLIGTDVD 596 (608)
Q Consensus 558 ~~~~i~iP~~~~---~l~pl~~~iplQllAy~~A---~~~G~dpD 596 (608)
++..+.+|..+. -.+.+..+..+|.+-..++ ..+|.+|.
T Consensus 174 GDA~l~i~g~~~kvgp~STi~g~~i~n~i~~e~~~~L~~~G~~pP 218 (247)
T PRK02947 174 GDAVLEIEGLEAKVGPTSTVVGVAILNAIFAEAAEELVERGIDPP 218 (247)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 765898789777757577899999999999999999997799998
No 117
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=96.67 E-value=0.06 Score=32.58 Aligned_cols=119 Identities=22% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHH--------------------CCCCCHHH
Q ss_conf 6774467798742036145521366449999999999997422114423243--------------------14463788
Q gi|254780943|r 449 IYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGE--------------------LKHGPIAL 508 (608)
Q Consensus 449 ~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE--------------------~kHGP~al 508 (608)
.+..++.+.+.+.+..++|+.|.|-+.++|.--|--|.--....-.++++-- |..---++
T Consensus 19 i~~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~~~if~~ql~~~ 98 (177)
T cd05006 19 IEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEAL 98 (177)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999987998999968740888999999873576668887017976787788888756532999999999974
Q ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCH
Q ss_conf 0798718999448014688999999998279808999565321000134662798688781
Q gi|254780943|r 509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGE 569 (608)
Q Consensus 509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~ 569 (608)
..++-.+|+|...+... -++..++..+.||.+++.+|..++....+.. +..+.+|..+.
T Consensus 99 ~~~gDili~iS~sG~s~-nii~a~~~ak~~g~~~i~ltg~~gg~l~~~~-D~~i~vps~~~ 157 (177)
T cd05006 99 GQPGDVLIGISTSGNSP-NVLKALEAAKERGMKTIALTGRDGGKLLELA-DIEIHVPSDDT 157 (177)
T ss_pred CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEECCCCCHHHHHC-CEEEEECCCCC
T ss_conf 46898899981899998-9999999999879989999878986167619-98999699985
No 118
>pfam10432 bact-PGI_C Bacterial phospho-glucose isomerase C-terminal region. This is the C-terminal half of a bacterial phospho-glucose isomerase EC:5.3.1.9 protein which is similar to eukaryote homologues to the extent that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This domain contributes a good proportion of the active catalytic site residues. This PGI uses the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate. It is associated with family SIS, pfam01380.
Probab=96.25 E-value=0.11 Score=30.88 Aligned_cols=128 Identities=19% Similarity=0.134 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCC-----CCEEEEEECCCHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079-----8718999448014
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITE-----GTFVIAIAPYDRF 524 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~-----~~~vi~i~~~~~~ 524 (608)
+...+++|.++.+.-.++ -|.+...++|.=-.--|-|-+-++|-.-.--|+-|--+..-+. +..++++-.+++
T Consensus 5 ~N~Ak~LA~~l~~~iPvi-y~~~~~~~~A~R~k~qlnENaK~~a~~~~lPE~nHNeivg~~~~~~~~~~~~v~l~d~~d- 82 (154)
T pfam10432 5 KNPAKRLASELAGYIPVI-YGSPLYRAAAYRFKNQLNENAKYPAFSGELPEANHNEIVGLEGPFSLLRLRVVLLRDRED- 82 (154)
T ss_pred CCHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCC-
T ss_conf 179999999981888889-968853799999999999973887565789852210010205755567727999816985-
Q ss_pred HHHH---HHHHHHH-HHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf 6889---9999999-8279808999565321000134662798688781566589999-9999999999983877988
Q gi|254780943|r 525 FQKT---LSNIQEI-VTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSL-PIQMIAYCTAVLIGTDVDQ 597 (608)
Q Consensus 525 ~~k~---~s~~~Ei-~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~i-plQllAy~~A~~~G~dpD~ 597 (608)
.+++ ..-.+|+ +.|+..++.|..+++ ..+.-+++.+ ..-+.|||+|+.+|+||..
T Consensus 83 ~~~~~~R~~~~~~i~~~~~~~v~~i~~~g~------------------s~l~rl~~li~lgD~~S~yLA~~~gvDP~~ 142 (154)
T pfam10432 83 DPRTKRRADITEEIAEDRGVNVIEIEAEGG------------------SPLERLASLIYLGDFASVYLALIRGVDPEP 142 (154)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCC------------------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 688999999999999866986699946999------------------899999999999999999999981979641
No 119
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=96.15 E-value=0.12 Score=30.54 Aligned_cols=120 Identities=22% Similarity=0.178 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH-----HHHHHHHCCCC--------------CHHH-CCCCCHH
Q ss_conf 76774467798742036145521366449999999999-----99742211442--------------3243-1446378
Q gi|254780943|r 448 NIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKI-----KEISYLHAEGY--------------AAGE-LKHGPIA 507 (608)
Q Consensus 448 ~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKl-----kE~syihaeg~--------------~agE-~kHGP~a 507 (608)
..+...+.+.+.+.+-..+++.|.|-+.+.|.--|--| +|--.++|-+. ...+ |..---+
T Consensus 26 ~I~~aa~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~~~vF~rQl~a 105 (196)
T PRK10886 26 AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRA 105 (196)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999998799799986847488999999999646556898840566326705654311667799999999998
Q ss_pred HHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCEEECCCCC
Q ss_conf 80798718999448014688999999998279808999565321000134--66279868878
Q gi|254780943|r 508 LITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFP--SIETIVLPSMG 568 (608)
Q Consensus 508 li~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~--~~~~i~iP~~~ 568 (608)
+-.++-.+|++.+.+... -.+.+++..+.||-++|.++..++-...+.. .+-.|.+|..+
T Consensus 106 lg~~gDiLi~iStSGnS~-Nii~Ai~~A~~~g~~~i~ltG~~gg~l~~l~~~~Di~I~vps~~ 167 (196)
T PRK10886 106 LGHAGDVLLAISTRGNSR-DIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred HCCCCCEEEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEECCCCC
T ss_conf 567999899994899998-99999999998899899997688623665157679899869998
No 120
>PRK13936 phosphoheptose isomerase; Provisional
Probab=96.15 E-value=0.12 Score=30.54 Aligned_cols=119 Identities=23% Similarity=0.203 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HHHHHHCCC--------------CCHHH-CCCCCHHH
Q ss_conf 67744677987420361455213664499999999999-----974221144--------------23243-14463788
Q gi|254780943|r 449 IYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----EISYLHAEG--------------YAAGE-LKHGPIAL 508 (608)
Q Consensus 449 ~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E~syihaeg--------------~~agE-~kHGP~al 508 (608)
.+...+.+++.+.+-..+|+.|.|-+.+.|.--|--|. |-..++|-+ |...+ |..---++
T Consensus 29 i~~aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~g~~~vf~rQl~a~ 108 (197)
T PRK13936 29 IAQAVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDYSYNEVFSKQVRAL 108 (197)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999987998999968789999999999986654127888755764367401101027878999999999983
Q ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCEEECCCCC
Q ss_conf 0798718999448014688999999998279808999565321000134--66279868878
Q gi|254780943|r 509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFP--SIETIVLPSMG 568 (608)
Q Consensus 509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~--~~~~i~iP~~~ 568 (608)
..++-.+|+|.+.+.. +-.+..++..+.||.+++.++..++-...+.. .+-.|.+|...
T Consensus 109 ~~~gDili~iS~SGnS-~Nii~A~~~A~~~g~~~i~ltG~dgg~l~~l~~~~Di~i~vps~~ 169 (197)
T PRK13936 109 GQPGDVLLAISTSGNS-ANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPHDR 169 (197)
T ss_pred CCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEECCCCC
T ss_conf 8999989999699999-899999999998599599998168535675256689899819997
No 121
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=95.69 E-value=0.18 Score=29.22 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----H-----------HHHHHC--CCCCHHH-CCCCCH
Q ss_conf 99767744677987420361455213664499999999999-----9-----------742211--4423243-144637
Q gi|254780943|r 446 LQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----E-----------ISYLHA--EGYAAGE-LKHGPI 506 (608)
Q Consensus 446 l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E-----------~syiha--eg~~agE-~kHGP~ 506 (608)
++..+..++.+.+.+.+...+|+.|.|-+.+.|.--|--|. | .+.+-| .-|...+ |.+---
T Consensus 27 ~~~I~~aa~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~Lsd~s~lTa~~ND~g~e~iF~~Ql~ 106 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVE 106 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999987997999968588999999999874631446665432532767775010076648899999999
Q ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf 88079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r 507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG 568 (608)
Q Consensus 507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~ 568 (608)
++..++-.+|+|.+.+.. +-++.+++..+.||.+++.++..++-...... +-.+.+|..+
T Consensus 107 ~~~~~gDvLi~iS~SGnS-~Nii~A~~~Ak~~g~~~i~ltG~~GG~l~~l~-D~~i~Vps~~ 166 (192)
T PRK00414 107 AVGREGDVLLGISTSGNS-GNIIKAIEAAREKGMKVITLTGKDGGKMAGLA-DIEIRVPHFG 166 (192)
T ss_pred HHCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CEEEEECCCC
T ss_conf 817899999997689999-99999999999889989999779961477608-9799918999
No 122
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=95.46 E-value=0.22 Score=28.68 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=70.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCC--CEEEECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 51035203654307999999998625667--31430420100-1233445550577526788189999999986302442
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLK--VEIDVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTI 367 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~--v~v~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~t 367 (608)
++|+|||+... +....+-+-++ ++.+ +.-+.+.-|.. .-....+.+++|.+-..-+. .|++.|+..|.++
T Consensus 68 ~~ILfVgtk~q--a~~~v~~~A~~-~g~~yv~~RWlgG~LTN~~l~~~~ePdlliV~Dp~~e~----~AV~EA~~l~IPv 140 (204)
T PRK04020 68 EKILVVSSRQY--GQKPVKKFAEV-VGAKAITGRFIPGTLTNPSLKGYIEPDVLVVTDPRGDA----QAVKEAIEIGIPV 140 (204)
T ss_pred CEEEEEECCHH--HHHHHHHHHHH-HCCEEECCCCCCCCCCCHHHCCCCCCCEEEEECCCCCH----HHHHHHHHCCCCE
T ss_conf 84999979899--99999999999-69906826227986568313025689989997886304----8999998769998
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4651178763100024101367420011000788899999999999997762120015776322
Q gi|254780943|r 368 GSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQEREL 431 (608)
Q Consensus 368 iaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~ 431 (608)
+||+++-.. -...|+.||.|- -| --+--+.+.+||-...+.+|.++.++..++
T Consensus 141 IaivDTn~d--p~~Vdy~IP~ND---ds------~~SI~Li~~lLa~ail~~kg~~~~~~~~~v 193 (204)
T PRK04020 141 VALCDTDNL--TSNVDLVIPTNN---KG------RKALALIYWLLAREILRERGEIKPDEDLPV 193 (204)
T ss_pred EEEECCCCC--CHHCCEEEECCC---CC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 998279989--111573651688---30------738999999999999997397776668878
No 123
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=95.26 E-value=0.19 Score=29.13 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=30.8
Q ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCEEECCC
Q ss_conf 0798718999448014688999999998279808999565321-000134662798688
Q gi|254780943|r 509 ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGL-KRQDFPSIETIVLPS 566 (608)
Q Consensus 509 i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~-~~~~~~~~~~i~iP~ 566 (608)
++.++.+|++.=.+.|.| |+++.++...|++++++||+.+-. +..+..+++++.+|.
T Consensus 70 v~~~~~lIAvSYSGNT~E-Tl~~~e~A~~~~~~~~aITSGG~L~e~A~e~g~~~i~iP~ 127 (338)
T TIGR02128 70 VDGKTLLIAVSYSGNTEE-TLSAVEEAKKKGAKVIAITSGGKLEEMAKEEGLDVIKIPK 127 (338)
T ss_pred CCCCEEEEEEECCCCHHH-HHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCEEEECC
T ss_conf 898517999861786689-9999999986579559994485388630114875688288
No 124
>PRK13938 phosphoheptose isomerase; Provisional
Probab=95.17 E-value=0.27 Score=28.06 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH-----HHHHHCCC--------------CCHHH-CCCCCH
Q ss_conf 97677446779874203614552136644999999999999-----74221144--------------23243-144637
Q gi|254780943|r 447 QNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKE-----ISYLHAEG--------------YAAGE-LKHGPI 506 (608)
Q Consensus 447 ~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE-----~syihaeg--------------~~agE-~kHGP~ 506 (608)
+..+.-.+.+.+-+.+-..+|+.|.|-+.+.|.--|--|.- =.-++|.+ |...+ |.+---
T Consensus 29 ~~i~~~~~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~vF~rQl~ 108 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALE 108 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999879989999686889999999999863335789984745447880788887624789999999999
Q ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf 88079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r 507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG 568 (608)
Q Consensus 507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~ 568 (608)
++..++-.+|.|.+.+... -++.+++..+.+|.+++.++..++-...+..+ ..+.+|..+
T Consensus 109 al~~~gDvLi~iStSGnS~-NIi~A~~~Ak~~g~~~i~ltG~~gg~l~~l~D-~~i~vps~~ 168 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSM-SVLRAAKTARELGVTVVAMTGESGGQLAEFAD-FLINVPSRD 168 (196)
T ss_pred HCCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC-EEEEECCCC
T ss_conf 7168999899977999999-99999999998799899998899631775489-899938998
No 125
>KOG1268 consensus
Probab=94.96 E-value=0.31 Score=27.66 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHC-
Q ss_conf 79998759999999997---6------7744677987420361455213664499999999999974221144232431-
Q gi|254780943|r 432 IRSLVEIPRKMFDVLQN---I------YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGEL- 501 (608)
Q Consensus 432 ~~~L~~lp~~i~~~l~~---~------~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~- 501 (608)
.+++-.-|+.+.....- . -.-.+..-.....+++++++|.|.+|-.|+-.---|.|++-++.--=-|.+|
T Consensus 315 qKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDfl 394 (670)
T KOG1268 315 QKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASDFL 394 (670)
T ss_pred HHHHHHCCHHHHHHCCCEECCCCCEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
T ss_conf 66776174577775056131466446615764411455311564799844408888777899999856975622144567
Q ss_pred -CCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--CCCCCEEECCC-----CCHHHHH
Q ss_conf -446378807987189994480146889999999982798089995653210001--34662798688-----7815665
Q gi|254780943|r 502 -KHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQD--FPSIETIVLPS-----MGEIVSP 573 (608)
Q Consensus 502 -kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~--~~~~~~i~iP~-----~~~~l~p 573 (608)
|-+|+ =.+-.+||+...+++.+.+ -+++=.+.|||-++.|++.-+..... ..+++.=.=|+ +..+.+-
T Consensus 395 DR~~pi---fRdDvc~FvSqSGETaDtl-laL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpEigvAsTKaYTSQ 470 (670)
T KOG1268 395 DRNTPI---FRDDVCFFVSQSGETADTL-LALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQ 470 (670)
T ss_pred HCCCCC---EECCEEEEEECCCCHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEECHHHHHH
T ss_conf 507982---0055799992687628899-999988863966998752557620023344223057874453311477899
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q gi|254780943|r 574 IVFSLPIQMIAYCTAV 589 (608)
Q Consensus 574 l~~~iplQllAy~~A~ 589 (608)
+ |.+-+||.+++.
T Consensus 471 ~---i~lvm~aL~~s~ 483 (670)
T KOG1268 471 Y---IALVMFALWMSE 483 (670)
T ss_pred H---HHHHHHHHHHCC
T ss_conf 9---999999999641
No 126
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=94.93 E-value=0.19 Score=29.06 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=45.8
Q ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCEEECCCCC
Q ss_conf 880798718999448014688999999998279808999565321-00013466279868878
Q gi|254780943|r 507 ALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGL-KRQDFPSIETIVLPSMG 568 (608)
Q Consensus 507 ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~-~~~~~~~~~~i~iP~~~ 568 (608)
.-+++++.||++.-.+++.| +++.+++.+.||+++++||+.+.. +..+......+.+|...
T Consensus 39 ~~v~~~~lvi~~S~SGnTeE-tl~~~~~a~~~ga~vi~itsGG~L~~~a~~~~~p~v~iP~g~ 100 (119)
T cd05017 39 AFVDRKTLVIAVSYSGNTEE-TLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEECCCCC
T ss_conf 75587878999928979689-999999999859909998499559999988799989879999
No 127
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.83 E-value=0.32 Score=27.49 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999986302442465117876310-0024101367420011000788899999999999997762120015776322
Q gi|254780943|r 353 TLASLRYMRTQGLTIGSLVNVLESTIA-RESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQEREL 431 (608)
Q Consensus 353 ti~Al~~ak~~g~~tiaItN~~~S~la-~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~ 431 (608)
....++.+|++|+++|.|--.. |..| +.+|..|++.-|-+.+. +|.|+-..+ ..+..+.+-.+++
T Consensus 195 ~~~~l~~a~~~GaklIvVDPr~-t~tA~~~AD~wl~irPGTD~AL-----------~lam~~vii--~e~l~D~~Fv~~~ 260 (609)
T cd02751 195 SYYYLKQAKDAGVRFICIDPRY-TDTAAVLAAEWIPIRPGTDVAL-----------MLAMAHTLI--TEDLHDQAFLARY 260 (609)
T ss_pred HHHHHHHHHHCCCEEEEECCCC-CCHHHHHCCEEECCCCCCCHHH-----------HHHHHHHHH--HCCCCCHHHHHHH
T ss_conf 7899999998889799989988-8255661388857689967999-----------999999999--8788317888763
Q ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 79998--------------75999999999767744677987420361455213664
Q gi|254780943|r 432 IRSLV--------------EIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSS 474 (608)
Q Consensus 432 ~~~L~--------------~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~ 474 (608)
...+. ..|+..+++-.-..+.++++|+.+...+.++..|.|.+
T Consensus 261 t~Gfde~~~~v~g~~Dg~~~TPE~aa~itGVpa~~I~~~A~~~a~~~~~i~~g~g~~ 317 (609)
T cd02751 261 TVGFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIASKRTMIAQGWGLQ 317 (609)
T ss_pred CCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 546699987642664467689999987778899999999999974687899777434
No 128
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=94.67 E-value=0.35 Score=27.25 Aligned_cols=121 Identities=22% Similarity=0.345 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC--------------CCHHHHHH---HHHHHHHHHHHH-CCCCC
Q ss_conf 8759999999997677446779874203614552136--------------64499999---999999974221-14423
Q gi|254780943|r 436 VEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRG--------------SSYPLALE---GALKIKEISYLH-AEGYA 497 (608)
Q Consensus 436 ~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G--------------~~y~~A~E---gALKlkE~syih-aeg~~ 497 (608)
+.+|-+++.++++...-++-+.+.|.+--+.+++|.| |.|++--| |=+==-|-+-.| +||.+
T Consensus 30 ~~v~~Av~~~lpdi~~Avd~i~~~~~~GGRLiY~GAGTSGRLGvLDAvECPPTy~v~~~lV~Gi~AGG~~A~~~a~EG~E 109 (291)
T TIGR00274 30 KLVPLAVEEVLPDIAAAVDVIVEAFQKGGRLIYIGAGTSGRLGVLDAVECPPTYGVSPELVVGIIAGGEEAILHAVEGAE 109 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCC
T ss_conf 43799998742889999999999986798089876875331022356468489898821014203001688611336744
Q ss_pred HHHCC-CCCHHH----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 24314-463788----079871899944801468899999999827980899956532100013466
Q gi|254780943|r 498 AGELK-HGPIAL----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSI 559 (608)
Q Consensus 498 agE~k-HGP~al----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~ 559 (608)
+-. -|--+| +.++-.||-|+-.++ .+-....++=-|++|+++|.|+..+........+.
T Consensus 110 --D~~~~G~~dL~~i~lt~~DvvvgIaASGr-TPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~~Ad~ 173 (291)
T TIGR00274 110 --DSEEAGANDLKNIRLTKNDVVVGIAASGR-TPYVIGALEYARKLGAKTIAIACNPESAVSKQADV 173 (291)
T ss_pred --CCHHHHHHHHHHCCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf --23588899987322563476888817897-57899999999970782577741774223121443
No 129
>LOAD_sis consensus
Probab=94.58 E-value=0.28 Score=27.95 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 3614552136644999999999999742-211442324314463788079871899944801468899999999827980
Q gi|254780943|r 463 CQTLLYVGRGSSYPLALEGALKIKEISY-LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGR 541 (608)
Q Consensus 463 ~~~~~~lG~G~~y~~A~EgALKlkE~sy-ihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~ 541 (608)
.++++++|.|-+.-.|.-.+-++.|... +........+|.+-..... ++..++++...+++.+- +.+++..+.+|++
T Consensus 2 ~~rii~ig~ggSs~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~SG~t~e~-~~a~~~~~~~~~~ 79 (90)
T LOAD_sis 2 AGRVVFIGAGGSALGAQLLAKALAERGAVIFVSVNVADEFLARVLALL-DDDLLVIISKSGGTTET-LLAALLAKKRGAK 79 (90)
T ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCEEEEECCCCCCHHH-HHHHHHHHHCCCE
T ss_conf 842999997019999999999999997499769974531106688789-78889998789888999-9999999988993
Q ss_pred EEEEECCCC
Q ss_conf 899956532
Q gi|254780943|r 542 VIFITDEEG 550 (608)
Q Consensus 542 vi~I~~~~~ 550 (608)
++.+++..+
T Consensus 80 ~i~it~~~~ 88 (90)
T LOAD_sis 80 TIAITNVAG 88 (90)
T ss_pred EEEEECCCC
T ss_conf 999968888
No 130
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=94.42 E-value=0.38 Score=27.01 Aligned_cols=123 Identities=10% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--EEEECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 565510352036543079999999986256673--1430420100-1233445550577526788189999999986302
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKV--EIDVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRTQG 364 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v--~v~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g 364 (608)
.+...|+|||+-. ++-...+-+- +.+|.+. .-+.+.-|.. ....+.+..++|.+-.--+. .|++.|...|
T Consensus 69 ~~~~~Il~V~tr~--~~q~aV~kfA-~~tG~~~i~~Rw~pGtlTN~i~~~f~eP~lliV~DP~~d~----~AV~EA~~~n 141 (242)
T PTZ00254 69 ENPADVVVVSSRP--YGQRAILKFS-QYTGASFIAGRFTPGTFTNQIQKKFQEPRLLIVTDPRTDH----QAIREASYVN 141 (242)
T ss_pred CCCCCEEEEECCH--HHHHHHHHHH-HHHCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH----HHHHHHHHCC
T ss_conf 4799779998388--9879999999-9979942405127866468766524688889996675440----8999999859
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 4424651178763100024101367420011000788899999999999997762120015776
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQE 428 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~ 428 (608)
.+|+|+|++-. ++ +..|+.||.|- |+--+--+...|||-+.-+.||.++.+..
T Consensus 142 IPvIal~DTds-~p-~~VD~~IP~Nd---------ds~~SI~Li~~lLArevl~~rG~i~r~~~ 194 (242)
T PTZ00254 142 IPVIALCDTDA-PL-EYVDIAIPCNN---------RGKKSIAMMYWLLAREVLRLRGTIPRSEP 194 (242)
T ss_pred CCEEEEECCCC-CC-CCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98898616999-95-32656765688---------30768999999999999983688788898
No 131
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.23 E-value=0.45 Score=26.52 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 7446779874203614552136
Q gi|254780943|r 451 SQIEKLCCGLAKCQTLLYVGRG 472 (608)
Q Consensus 451 ~~i~~~a~~~~~~~~~~~lG~G 472 (608)
+.|+++|+.+...+..+..|.|
T Consensus 296 ~~I~~lA~~~a~~~~~i~~g~g 317 (609)
T cd02769 296 ETIRELARRFASKRTMIMAGWS 317 (609)
T ss_pred HHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999999836975898775
No 132
>TIGR01012 Sa_S2_E_A ribosomal protein S2; InterPro: IPR005707 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the ribosomal protein of the eukaryotic cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=94.00 E-value=0.087 Score=31.46 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE--EECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6551035203654307999999998625667314--30420100123-34455505775267881899999999863024
Q gi|254780943|r 289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI--DVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v--~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
+...|.++..= .-|+-+=.-|-+.+|...-+ +.|.-|..-.. ...+.. ||.|+-=--= -.|++.|-+-|.
T Consensus 61 NP~~I~vvS~R---~Yg~~pV~~f~~~tG~~~I~GRf~PGT~TNp~~~~f~EP~-vv~vtDPR~D---~Qa~~EA~~vgi 133 (197)
T TIGR01012 61 NPEDILVVSAR---IYGQKPVLKFAEVTGARAIAGRFIPGTFTNPALKEFREPE-VVVVTDPRAD---HQALKEASEVGI 133 (197)
T ss_pred CCCCEEEEECC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCE-EEEECCCCCC---CCHHHHHHCCCC
T ss_conf 82111344015---2224689999876088745665437776402331367873-7997588766---212120001589
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 4246511787631000241013674200110007888999999999999977621200157763
Q gi|254780943|r 366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQER 429 (608)
Q Consensus 366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~ 429 (608)
+++|+|++.+ ..+..|.+||+|- |+=-|=-++-+|||-+..+.||.++.++.-
T Consensus 134 P~vALcDTd~--~~~~vDl~IP~NN---------KG~~s~al~yWlLaRe~L~~RG~i~~~~~~ 186 (197)
T TIGR01012 134 PIVALCDTDN--SLRYVDLVIPTNN---------KGRRSLALIYWLLAREILRMRGVISADEDL 186 (197)
T ss_pred CEEEEECCCC--CCCCCCEEECCCC---------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6689875887--5000240107986---------136899999999999999753740479874
No 133
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=93.92 E-value=0.51 Score=26.12 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-------H-HHHHHCCCCCH-------H
Q ss_conf 9875999999999767744677987420361455213664499999999999-------9-74221144232-------4
Q gi|254780943|r 435 LVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-------E-ISYLHAEGYAA-------G 499 (608)
Q Consensus 435 L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-------E-~syihaeg~~a-------g 499 (608)
=+.++..+.+.+++....++.+++.+..-.++|++|.|.+=-++.--|.-+- | +.++.|-|..+ .
T Consensus 30 d~~v~~Av~~~lp~I~~~v~~~~~~l~~gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~~liAGG~~Al~~~~Ega 109 (273)
T PRK05441 30 DKKVALAVEKALPQIAAAVDAIAAALRSGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGA 109 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCC
T ss_conf 89999999998789999999999999759829997476158899988986487668998991446768899986361102
Q ss_pred --HCCCCCHHH----HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC-HHHH
Q ss_conf --314463788----079871899944801468899999999827980899956532100013466279868878-1566
Q gi|254780943|r 500 --ELKHGPIAL----ITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG-EIVS 572 (608)
Q Consensus 500 --E~kHGP~al----i~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~-~~l~ 572 (608)
...-|-..+ +.++-.||.|+-.++ .+-+...++..+.+|+.++.|++..+.......+. .|. |.++ |.++
T Consensus 110 ED~~~~g~~dl~~~~~~~~DvvIgIaASG~-TPyv~~al~~A~~~ga~ti~I~~n~~s~l~~~ad~-~I~-~~tGpEvit 186 (273)
T PRK05441 110 EDDAELGAADLKAINLTAKDVVVGIAASGR-TPYVIGALEYAREIGALTIAISCNPGSPISKEADI-AIE-VVVGPEVLT 186 (273)
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCE-EEE-ECCCCCCCC
T ss_conf 468889999999828996578999936889-71899999999986995799853896200010681-375-178843002
Q ss_pred H-------HHHHHHHHHHHHHHHHHHCC
Q ss_conf 5-------89999999999999998387
Q gi|254780943|r 573 P-------IVFSLPIQMIAYCTAVLIGT 593 (608)
Q Consensus 573 p-------l~~~iplQllAy~~A~~~G~ 593 (608)
. -..=+.|-+++--+.+.+|.
T Consensus 187 GSTRmKAGTAqK~iLNmiST~~mi~lGk 214 (273)
T PRK05441 187 GSTRMKAGTAQKLVLNMISTGVMIKLGK 214 (273)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6665452259999999998999998086
No 134
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=93.83 E-value=0.53 Score=26.00 Aligned_cols=124 Identities=15% Similarity=0.019 Sum_probs=69.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHC---CCCEEEEEECCCHHHHHHH
Q ss_conf 4677987420361455213664499999999999974221144232431446378807---9871899944801468899
Q gi|254780943|r 453 IEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALIT---EGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 453 i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~---~~~~vi~i~~~~~~~~k~~ 529 (608)
.+++|..+.+.--+ +.|.+...++|.=-.--|-|-+-++|-.-..-|+-|.-+.--+ ...+++++..++.-..++.
T Consensus 3 Ak~LA~~l~~~iPv-Iy~~~~~~~~A~R~k~qlnENaK~~a~~~~lPE~nHNeivgw~~~~~~~~~~~~~~d~~d~~r~~ 81 (132)
T cd05637 3 AKELALELAGRIPI-IYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIK 81 (132)
T ss_pred HHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 89999997089878-99786328999999999999718973347786200345531356655585799964888337899
Q ss_pred H--HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf 9--9999982798089995653210001346627986887815665899999-9999999999838779
Q gi|254780943|r 530 S--NIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLP-IQMIAYCTAVLIGTDV 595 (608)
Q Consensus 530 s--~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~ip-lQllAy~~A~~~G~dp 595 (608)
- .+.....++..+..+.. +-+..+.-+++.|- .-+.|||+|+.+|+||
T Consensus 82 ~r~~~~~~~~~~~~~~~v~~------------------~g~s~l~rl~~li~l~D~~S~yLA~~~gvDP 132 (132)
T cd05637 82 LRIVITKFEEGGIPYEVIES------------------VGASPLARLLSLIYLGDLASVYLALLRGVDP 132 (132)
T ss_pred HHHHHHHHHHCCCCEEEEEC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999886415986799968------------------9998999999999999999999999808898
No 135
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=93.42 E-value=0.61 Score=25.56 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998630244246511787631000241013674200110007888999999999999977621200157763227
Q gi|254780943|r 353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI 432 (608)
Q Consensus 353 ti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~ 432 (608)
....++.+|++|++++.| +-..|..++.+|..+++..|-+.++ ++.|+-..+ ..+..+.+-..++.
T Consensus 175 ~~~~~~~a~~~Gaklivv-dPr~t~ta~~Ad~~l~irPGTD~al-----------~la~~~~ii--~e~~~D~~fv~~~t 240 (501)
T cd02766 175 LMRIIQEARKRGAKVVVI-DPYRTATAARADLHIQIRPGTDGAL-----------ALGVAKVLF--REGLYDRDFLARHT 240 (501)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCCCCHHHHHCEECCCCCCCCHHH-----------HHHHHHHHH--HCCCCCCCHHHHHC
T ss_conf 899999999879979996-6887717886287004679977999-----------852213998--77995332577751
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCH
Q ss_conf 999875--------99999999976774467798742036-14552136644
Q gi|254780943|r 433 RSLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQ-TLLYVGRGSSY 475 (608)
Q Consensus 433 ~~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~-~~~~lG~G~~y 475 (608)
..+..+ |+.+.+.-.-..+.++++|+.+...+ .+++.|.|.+.
T Consensus 241 ~Gfe~l~~~v~~~tpe~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~ 292 (501)
T cd02766 241 EGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQR 292 (501)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHCC
T ss_conf 6099999876549999987770999999999999741468648984550022
No 136
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=93.16 E-value=0.68 Score=25.26 Aligned_cols=121 Identities=26% Similarity=0.266 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----H------------HHHHHCCC--CCHHH-CCCCC
Q ss_conf 99767744677987420361455213664499999999999-----9------------74221144--23243-14463
Q gi|254780943|r 446 LQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIK-----E------------ISYLHAEG--YAAGE-LKHGP 505 (608)
Q Consensus 446 l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlk-----E------------~syihaeg--~~agE-~kHGP 505 (608)
.+........+++-|.+-+.++..|.|-+++-|+--|--|. | .|.+-|-| |.-.+ |-+.-
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqv 103 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999976997999769852451899999986078752789873686426377765650455889999999
Q ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC
Q ss_conf 788079871899944801468899999999827980899956532100013466279868878
Q gi|254780943|r 506 IALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG 568 (608)
Q Consensus 506 ~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~ 568 (608)
-|+-.++-.++.|.|.+.. +-.+..++..+.+|-+||++|..++-......+ ..|.+|...
T Consensus 104 eA~g~~GDvLigISTSGNS-~nVi~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D-~~i~VPs~~ 164 (176)
T COG0279 104 EALGQPGDVLIGISTSGNS-KNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLD-VEIRVPSTD 164 (176)
T ss_pred HHCCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-EEEECCCCC
T ss_conf 9527888789998179997-789999999987698799995588750001131-578658886
No 137
>KOG2446 consensus
Probab=90.91 E-value=0.63 Score=25.49 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=48.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-----ECCHHH-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 3565510352036543079999999986256673143-----042010-0123344555057752678818999999998
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID-----VSSEFR-YRDFVYSSKWASLFISQSGETADTLASLRYM 360 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~-----~asEf~-y~~~~~~~~tlvI~iSQSGeT~dti~Al~~a 360 (608)
=+++..|+=||.|.|.---+...-.+..+..--..+. .+.... .-...-++.||+|.+|.++.|++|+.-++.+
T Consensus 147 gk~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaeta 226 (546)
T KOG2446 147 GKKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETA 226 (546)
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 97534689943465443429999862357888841798716880518999853496535999995675858888639999
Q ss_pred HH
Q ss_conf 63
Q gi|254780943|r 361 RT 362 (608)
Q Consensus 361 k~ 362 (608)
|+
T Consensus 227 k~ 228 (546)
T KOG2446 227 KE 228 (546)
T ss_pred HH
T ss_conf 99
No 138
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.67 E-value=1.3 Score=23.37 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=60.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999986302442465117876310002410136742001100078889999999999999776212001577632279
Q gi|254780943|r 354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIR 433 (608)
Q Consensus 354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~ 433 (608)
...++.++++|++++.| +-..|..+..+|..+++.-|-+.++ ++.|+-..+ ..+..+.+-..++..
T Consensus 180 ~~~~~~a~~~Gaklivi-dPr~t~ta~~Ad~~l~i~PGTD~AL-----------~lai~~~ii--~~~~~D~~fi~~~t~ 245 (477)
T cd02759 180 GHWLVAAMKRGAKLIVV-DPRLTWLAARADLWLPIRPGTDAAL-----------ALGMLNVII--NEGLYDKDFVENWCY 245 (477)
T ss_pred HHHHHHHHHCCCEEEEE-ECCCCCHHHHHCEEEECCCCCCHHH-----------HHHHHHHHH--HCCCCCHHHHHHCCC
T ss_conf 99999999769959998-2688826886153242177762998-----------866666887--668758045663356
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCH
Q ss_conf 99875--------9999999997677446779874203614-552136644
Q gi|254780943|r 434 SLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQTL-LYVGRGSSY 475 (608)
Q Consensus 434 ~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~~~-~~lG~G~~y 475 (608)
.+..+ |+..++.-.-..+.++++|+.+.+.+.. +..|.|...
T Consensus 246 gfd~l~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~i~~g~g~~~ 296 (477)
T cd02759 246 GFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAIDQ 296 (477)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHCC
T ss_conf 299999853348977766663998999999999997179789995722313
No 139
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.90 E-value=1.5 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 31000241013674200
Q gi|254780943|r 377 TIARESDFIFPIKAGPE 393 (608)
Q Consensus 377 ~la~~aD~~i~~~aG~E 393 (608)
.-|+.||++||...--|
T Consensus 453 eTa~~ADiVLPa~t~~E 469 (617)
T cd02770 453 PSARYADILLPDTTELE 469 (617)
T ss_pred CCHHHCCEEECCCCHHH
T ss_conf 34531728935886321
No 140
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=89.78 E-value=0.34 Score=27.35 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCCCHHHHH-HHHHHH-HCCCCEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HHH
Q ss_conf 788189999-999986-3024424651178763100----02410136742001100078889999999999-----999
Q gi|254780943|r 347 SGETADTLA-SLRYMR-TQGLTIGSLVNVLESTIAR----ESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM-----AIY 415 (608)
Q Consensus 347 SGeT~dti~-Al~~ak-~~g~~tiaItN~~~S~la~----~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll-----al~ 415 (608)
+=||==++. -|..|| ++|++.| ++-.-..+++| .||..|.+..|-.++|.. | ++-+++ --.
T Consensus 173 ~~esHPvv~~~l~~AKk~nGaKii-V~DpR~t~taksahi~AD~~i~~k~GTdial~n-----a--~a~viI~egL~Dk~ 244 (694)
T TIGR01591 173 PAESHPVVASKLMRAKKRNGAKII-VIDPRKTETAKSAHIIADLFIPLKPGTDIALLN-----A--VANVIIEEGLYDKE 244 (694)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCHHHHHHHCCCEEEECCCCHHHHHHH-----H--HHHEEECCCCCCHH
T ss_conf 655543689999999850897899-975888602322111011065179970899997-----3--20024227861668
Q ss_pred HHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf 7762120-015776322799987599999999976774467798742036145-52136
Q gi|254780943|r 416 AGKVRGY-INEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLL-YVGRG 472 (608)
Q Consensus 416 l~~~~g~-i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~-~lG~G 472 (608)
+=..|-. ...+++++.++. +-.|+.++++-.-..+.|+++|+.++++++.- +=|=|
T Consensus 245 Fi~~R~~W~~F~E~r~~V~~-~yTpE~vE~ITgV~~d~Ir~~A~~yA~a~~~Ai~wGlG 302 (694)
T TIGR01591 245 FIEKRTDWEGFEEFREIVKG-KYTPEYVEKITGVPADLIREIARMYAKAGSAAILWGLG 302 (694)
T ss_pred HHHHHCCCCCHHHHHHHHCC-CCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89751487853788877504-78753222125788889999999983589679995550
No 141
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.14 E-value=1.7 Score=22.56 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89999999986302442465117876310002410136742001100078889999999999999776212001577632
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE 430 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~ 430 (608)
.....-++.+|++|+++|.| +-..|..++.+|..+++.-|-+.++ ++.|+-..+ ..+..+.+-..+
T Consensus 178 p~~~~~~~~a~~~GaklIvi-DPr~t~ta~~Ad~~l~irPGtD~al-----------~la~~~~ii--~~gl~D~~fl~~ 243 (539)
T cd02762 178 PDRVLRLKAAKDRGGSLVVI-DPRRTETAKLADEHLFVRPGTDAWL-----------LAAMLAVLL--AEGLTDRRFLAE 243 (539)
T ss_pred HHHHHHHHHHHHCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCHHHH-----------HHHHHHHHH--HHCCHHHHHHHH
T ss_conf 79999999999779989998-5868848998756740588846999-----------999987766--510005777776
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCH
Q ss_conf 279998759--------99999999767744677987420361455-2136644
Q gi|254780943|r 431 LIRSLVEIP--------RKMFDVLQNIYSQIEKLCCGLAKCQTLLY-VGRGSSY 475 (608)
Q Consensus 431 ~~~~L~~lp--------~~i~~~l~~~~~~i~~~a~~~~~~~~~~~-lG~G~~y 475 (608)
+...+..+- +..++.-.-..+.++++|+.+...+...+ .+.|...
T Consensus 244 ~t~G~e~l~~~~~~~tpe~~a~itGV~~~~I~~~A~~~a~~~~~~i~~~~G~~~ 297 (539)
T cd02762 244 HCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQT 297 (539)
T ss_pred HCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 415499999998608988887652998899999999985389789996666663
No 142
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.18 E-value=1.9 Score=22.13 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=61.8
Q ss_pred CEEEEECC-CCCC-HHHHHHHHHHHHCCCCEEEEECCCCC----------------CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 50577526-7881-89999999986302442465117876----------------310002410136742001100078
Q gi|254780943|r 339 WASLFISQ-SGET-ADTLASLRYMRTQGLTIGSLVNVLES----------------TIARESDFIFPIKAGPEIGVASTK 400 (608)
Q Consensus 339 tlvI~iSQ-SGeT-~dti~Al~~ak~~g~~tiaItN~~~S----------------~la~~aD~~i~~~aG~Ei~VasTK 400 (608)
++++.+-| -|++ .-....++.||++|+++|.|--..+- .-++.||..+.+..|-.++++
T Consensus 165 d~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~~~lt~~t~~Ad~~l~irpGtD~Al~--- 241 (574)
T cd02767 165 DLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGDIALL--- 241 (574)
T ss_pred CEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHCCCCCCHHHCEEECCCCCCHHHHH---
T ss_conf 88999777867868899999999998889699988975056664157554200034430544044056889589999---
Q ss_pred HHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8899999999999997762---12001577632279998759--------999999997677446779874203614552
Q gi|254780943|r 401 AFTCQLLVLVIMAIYAGKV---RGYINEEQERELIRSLVEIP--------RKMFDVLQNIYSQIEKLCCGLAKCQTLLYV 469 (608)
Q Consensus 401 sftaql~~l~llal~l~~~---~g~i~~~~~~~~~~~L~~lp--------~~i~~~l~~~~~~i~~~a~~~~~~~~~~~l 469 (608)
+.++-..+... .+.++.+-.+++...+..+. +.+++.---..+.++++|+.+...+..+++
T Consensus 242 --------~gi~~~lie~d~~~~~~~D~~FI~~~t~Gfee~~~~v~~~~~e~v~~~tGv~~e~I~~~A~~~a~a~~~ii~ 313 (574)
T cd02767 242 --------NGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREEIEAFAAMYAKSERVVFV 313 (574)
T ss_pred --------HHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf --------999999997365457866889998744679999999874999999988698999999999998337882799
Q ss_pred -ECCCC
Q ss_conf -13664
Q gi|254780943|r 470 -GRGSS 474 (608)
Q Consensus 470 -G~G~~ 474 (608)
|.|+.
T Consensus 314 wgmGit 319 (574)
T cd02767 314 WGMGIT 319 (574)
T ss_pred ECCCCC
T ss_conf 644544
No 143
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.80 E-value=2 Score=21.97 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=60.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--
Q ss_conf 999998630244246511787631000241013674200110007888999999999999977621200157763227--
Q gi|254780943|r 355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI-- 432 (608)
Q Consensus 355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~-- 432 (608)
..+..+|++|++++.| +-.-|..+..||..+++.-|-+.++ ++.|+-..+ ..+..+.+-..++.
T Consensus 190 ~~i~~ar~~GaklivI-DPr~t~ta~~AD~~l~irPGTD~aL-----------~la~~~~ii--~e~~~D~~fv~~~t~~ 255 (461)
T cd02750 190 HFLTEARYNGAKVVVV-SPDYSPSAKHADLWVPIKPGTDAAL-----------ALAMAHVII--KEKLYDEDYLKEYTDL 255 (461)
T ss_pred HHHHHHHHCCCEEEEE-CCCCCHHHHHHCCCCCCCCCCHHHH-----------HHHHHHHHH--HCCCCCHHHHHHHHCC
T ss_conf 9999999779979992-6999878997270468799961999-----------999999998--7688189999987385
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 99987599999999976774467798742036-1455213664
Q gi|254780943|r 433 RSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQ-TLLYVGRGSS 474 (608)
Q Consensus 433 ~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~-~~~~lG~G~~ 474 (608)
..+.--|+..++.-.-..+.++++|+.+...+ .+++.|.|..
T Consensus 256 ~~~~ytpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~G~~ 298 (461)
T cd02750 256 PFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGIN 298 (461)
T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHC
T ss_conf 3321999999988795999999999999867993898172534
No 144
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.66 E-value=2 Score=22.01 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=29.0
Q ss_pred ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 3889999768150689998999978988972476156788876
Q gi|254780943|r 90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLE 132 (608)
Q Consensus 90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~ 132 (608)
..++.|+=+|+=.+..+++.- .+.|....| +.|+++.++.
T Consensus 67 ~~d~vV~Sp~I~~~~p~~~~a-~~~gi~v~~--~~e~l~~~~~ 106 (459)
T PRK00421 67 GADVVVVSSAIKPDNPELVAA-RELGIPVVR--RAEMLAELMR 106 (459)
T ss_pred CCCEEEECCCCCCCCHHHHHH-HHCCCCEEE--HHHHHHHHHH
T ss_conf 999999899859989999999-987997988--9999999982
No 145
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.71 E-value=2.9 Score=20.91 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999986302442465117876310002410136742001
Q gi|254780943|r 354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
...++.++++|++++.| +-..|..++.+|..+++..|-+.
T Consensus 175 ~~~i~~a~~~Gak~vvi-DPr~t~ta~~Ad~~l~irPGtD~ 214 (512)
T cd02753 175 ARRIKRAKRNGAKLIVA-DPRRTELARFADLHLQLRPGTDV 214 (512)
T ss_pred HHHHHHHHHCCCEEEEE-CCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999998789879994-68667078875524256889428
No 146
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=84.21 E-value=3 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 442465117876310002410136742001
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
.-.+...+.--++=++.||++||...--|.
T Consensus 574 ld~iV~~D~~mt~Ta~yADiVLPaat~~Ek 603 (912)
T TIGR03479 574 LELIVDINFRMDSTAMYADIVLPAAWHYEK 603 (912)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCHHHH
T ss_conf 997999825128178764200666416552
No 147
>PRK08350 hypothetical protein; Provisional
Probab=84.13 E-value=1.3 Score=23.41 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55505775267881899999999863024424651178763100024101367420
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
.|++.|=+-|=|+-++|++|++.||+.|..++-=--.-++.=+..+|..+-++||.
T Consensus 254 aNaILIK~NQIGTlTETleai~lA~~~g~~~viSHRSGETEDt~IADLAVa~~~gq 309 (341)
T PRK08350 254 YNALSIKPINLGTLTDLYNFVNDVKSEKITPILAEAKYEPADETLPHLALGLRCPA 309 (341)
T ss_pred CCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf 77079822222129999999999998799489985789864016999999718982
No 148
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=83.52 E-value=1.4 Score=23.11 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55505775267881899999999863024424651178763100024101367420
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
-++++|=..|-|+-.||+++++.||+.|..++.=-..-++.-+-.+|..+-++||.
T Consensus 201 ~NaiLiK~NQiGTlset~e~~~~ak~~g~~~ivShRSGETeD~~iaDLAVg~~a~~ 256 (296)
T pfam00113 201 CNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSGETEDTFIADLVVGLNAGQ 256 (296)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf 77169712111019999999999998696499866988776522999888608881
No 149
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=83.03 E-value=3.3 Score=20.45 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=56.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCC------------------CCCCCEEEEECCC-C-CC
Q ss_conf 035203654307999999998625--667314304201001233------------------4455505775267-8-81
Q gi|254780943|r 293 LLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFV------------------YSSKWASLFISQS-G-ET 350 (608)
Q Consensus 293 I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~------------------~~~~tlvI~iSQS-G-eT 350 (608)
.|..|.|||-=|+...+-++..+. .+| .+|...|.... +..-|++|++-|- | ..
T Consensus 156 fYtSGRG~SNEaay~~qLfaR~~GsNNlp----DcS~mCH~pS~vaL~~SiG~G~g~v~l~D~~~~D~~v~iG~n~gtN~ 231 (824)
T TIGR01701 156 FYTSGRGTSNEAAYLYQLFARSLGSNNLP----DCSNMCHEPSSVALKKSIGIGKGSVLLEDFEHTDLLVLIGSNAGTNH 231 (824)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 11144632689999999999872778713----33543168611234220232303677300005837999545489888
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 899999999863024424651178763100024101
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
+-.+..|..+|++|+++|.|-=-.+--|-|..+=-.
T Consensus 232 PR~l~~L~~a~~rG~KiI~iNPl~E~GL~rF~~P~~ 267 (824)
T TIGR01701 232 PRMLKELIKAKKRGAKIIAINPLRERGLERFASPQI 267 (824)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCC
T ss_conf 436889999996398399975885501130167887
No 150
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=82.01 E-value=1.8 Score=22.29 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=61.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH------HHC---C---CCC-C-------------------CCC
Q ss_conf 1035203654307999999998625667-31430420------100---1---233-4-------------------455
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE------FRY---R---DFV-Y-------------------SSK 338 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE------f~y---~---~~~-~-------------------~~~ 338 (608)
..|-.--|..+.+.....||-+-..+.| ++.+.|.. |.. . ... + .-+
T Consensus 251 y~y~~~~~~~~s~~e~i~~y~~l~~kYPIisIEDp~~E~D~~gw~~lt~~lg~~~qiVGDDL~vTn~~rl~~gi~~~~~n 330 (408)
T cd03313 251 YVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAAN 330 (408)
T ss_pred EEEECCCCCEECHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 14735888510899999999999975987788568872127899999986598079988742447889986056517663
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 505775267881899999999863024424651178763100024101367420
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
+++|=+.|-|+-.||+++++.||+.|..++.=--.-++.=.-.+|..+-++||.
T Consensus 331 aiLiK~NQiGTvset~ea~~la~~~g~~~ivShRSGETeD~~IaDLAVg~ga~~ 384 (408)
T cd03313 331 ALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf 799805457729999999999998698799978998865017999898708980
No 151
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=81.47 E-value=2.2 Score=21.74 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5505775267881899999999863024424651178763100024101367420
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
++++|=+.|-|+-.||+++++.||+.|..++.=--.-++.-.-.+|..+-++||.
T Consensus 347 naiLIK~NQiGTlset~eai~~A~~~g~~~ivShRSGETeD~~iaDLAVg~ga~~ 401 (442)
T PTZ00081 347 NALLLKVNQIGSITEAIEACKLCMKNGWGVMVSHRSGETEDTFIADLVVGLGTGQ 401 (442)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
T ss_conf 6389833232209999999999998798799957988766300888777448982
No 152
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.05 E-value=3.9 Score=19.97 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 5505775267881899999999863024424651178763100024101367
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
.+++|.+.+.-+. .|+++|+..|.+++||+++- .--...|+.||.+
T Consensus 128 Pdliiv~d~~~~~----~ai~Ea~~l~IPvI~i~Dtn--~~p~~idypIP~N 173 (193)
T cd01425 128 PDLVIVLDPRKEH----QAIREASKLGIPVIAIVDTN--CDPDLIDYPIPAN 173 (193)
T ss_pred CCEEEEECCCCCH----HHHHHHHHHCCCEEEEECCC--CCCCCCCEEEECC
T ss_conf 9989998898416----89999986187557885089--9966587787588
No 153
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=80.51 E-value=2.3 Score=21.56 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=60.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCH---------HH--C-------------CCC--------CCCCCCE
Q ss_conf 35203654307999999998625667-31430420---------10--0-------------123--------3445550
Q gi|254780943|r 294 LVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSE---------FR--Y-------------RDF--------VYSSKWA 340 (608)
Q Consensus 294 ~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asE---------f~--y-------------~~~--------~~~~~tl 340 (608)
.+-+-|.++.+.....||-+-..+.| +..+.|.. |. . .++ .-.-+++
T Consensus 255 ~~~~~~~~~s~~eli~~y~~l~~~YPI~sIEDp~~EdD~~gw~~lt~~lg~k~~iVGDDL~vTn~~rl~kgi~~~~~Nai 334 (427)
T PRK00077 255 VLEGEGKVLTSEEQIDYLAELVDKYPIVSIEDGLDENDWDGWALLTERLGDKVQLVGDDLFVTNPKILKEGIEKGAANSI 334 (427)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 65477764588999999999998799778746888226899999999709967998884134688999725540766479
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5775267881899999999863024424651178763100024101367420
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
+|=+.|-|+-.+|++|++.||+.|..++.=--.-++.=+-.+|..+-++||.
T Consensus 335 LiK~NQiGTvset~eai~la~~~g~~~ivShRSGETeD~~IaDLAVg~ga~~ 386 (427)
T PRK00077 335 LIKVNQIGTLTETLEAIELAKRAGYTAVISHRSGETEDTTIADLAVATNAGQ 386 (427)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCH
T ss_conf 9844346739999999999998698799978989866215999898608973
No 154
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=80.14 E-value=3.1 Score=20.62 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=39.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 45550577526788189999999986302442465117876310002410136742
Q gi|254780943|r 336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG 391 (608)
Q Consensus 336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG 391 (608)
.+-+++|.|--|+...-.-..++.|+++|+++ .|.|-..+++...+|.+|.-.||
T Consensus 203 ~~~DlllviGTSl~V~Paa~l~~~a~~~g~~v-viIN~~~T~~D~~ad~~i~~~~~ 257 (260)
T cd01409 203 AEADALLVLGSSLMVYSGYRFVLAAAEAGLPI-AIVNIGPTRADHLATLKVDARCG 257 (260)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCCCCCCEEEEEECCHH
T ss_conf 70998999837851243678999999879939-99899999998644499927722
No 155
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=79.69 E-value=4.3 Score=19.67 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE-CCC-CCCCCCCCCCCCCCC
Q ss_conf 4455505775267881899999999863024424651-178-763100024101367
Q gi|254780943|r 335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV-NVL-ESTIARESDFIFPIK 389 (608)
Q Consensus 335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt-N~~-~S~la~~aD~~i~~~ 389 (608)
+++-+-|..+|.+-+..+.++.++...++|...++|+ |.+ +.++...+|+.|.+.
T Consensus 79 ~t~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~ 135 (172)
T pfam10740 79 ITETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLK 135 (172)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECC
T ss_conf 775576999769999789999999999869988998168888876144402667647
No 156
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=79.18 E-value=2.6 Score=21.16 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCC-CEEEECC---H---HHC-----CC--------CCCC-------------CCCEEE
Q ss_conf 203654307999999998625667-3143042---0---100-----12--------3344-------------555057
Q gi|254780943|r 296 SSCGTSYLAGLVGKFWFERLARLK-VEIDVSS---E---FRY-----RD--------FVYS-------------SKWASL 342 (608)
Q Consensus 296 vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~as---E---f~y-----~~--------~~~~-------------~~tlvI 342 (608)
+--|.++-......||.+-..+.| ++.+.+. + |.. .+ ...+ .|++.|
T Consensus 254 ~~~~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~~~aNaiLI 333 (423)
T COG0148 254 VLEGESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILI 333 (423)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCEECCHHHHHHHHHHCCCCEEEE
T ss_conf 63376468799999999999769978970898843078999999860983899767542328899998887456753899
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 752678818999999998630244246511787631000241013674200
Q gi|254780943|r 343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE 393 (608)
Q Consensus 343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E 393 (608)
-+-|=|+-++|++|++.|++.|.+++----.-++.=+..+|..+-++||.=
T Consensus 334 K~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqI 384 (423)
T COG0148 334 KPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQI 384 (423)
T ss_pred ECHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 520023189999999999987980887537788664338889998189801
No 157
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=78.74 E-value=4 Score=19.92 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 45550577526788189999999986302442465117876310002410136742
Q gi|254780943|r 336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG 391 (608)
Q Consensus 336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG 391 (608)
.+-+++|.+--|..+.-.-..++.++++|++++ +.|...++..+.+|.++.-.|+
T Consensus 163 ~~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iIN~~~T~~d~~ad~~i~g~~~ 217 (224)
T cd01412 163 AKADLFLVIGTSGVVYPAAGLPEEAKERGARVI-EINPEPTPLSPIADFAFRGKAG 217 (224)
T ss_pred HHCCEEEEECCCCEEHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCEEEECCHH
T ss_conf 719979998988555677789999997699499-9889999997635889988899
No 158
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=77.63 E-value=4.9 Score=19.26 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCC-CEEEEECCCCHH
Q ss_conf 4467798742036-145521366449
Q gi|254780943|r 452 QIEKLCCGLAKCQ-TLLYVGRGSSYP 476 (608)
Q Consensus 452 ~i~~~a~~~~~~~-~~~~lG~G~~y~ 476 (608)
.+.++++.+++++ ..+|.|-|+.+.
T Consensus 234 ~i~e~a~~mKna~Fg~if~GlGlt~S 259 (429)
T COG1029 234 EIEELADMMKNAKFGAIFVGLGLTSS 259 (429)
T ss_pred HHHHHHHHHHCCCCCEEEEECCEEEC
T ss_conf 99999999863981249983020003
No 159
>PRK09939 putative oxidoreductase; Provisional
Probab=77.47 E-value=5 Score=19.22 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.3
Q ss_pred HCCCCCEEEEEEEEC
Q ss_conf 315874348999958
Q gi|254780943|r 25 EYRGYDSSGMATICD 39 (608)
Q Consensus 25 e~RG~Ds~Gia~~~~ 39 (608)
|-.|.|--|.|.-+.
T Consensus 43 q~~gfdCp~Cawp~p 57 (759)
T PRK09939 43 KPEGFDCPGCAWPDP 57 (759)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 999987998889899
No 160
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.21 E-value=5.1 Score=19.18 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=35.3
Q ss_pred EEEEEECC---CCEEEECCC--CCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEEC-CCCCCCCCC
Q ss_conf 38999749---960776089--61366137620111110379827651889730574100-333222100
Q gi|254780943|r 168 SIIVARKG---PPLIIGHGE--GEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIY-DSQGYEIER 231 (608)
Q Consensus 168 ~i~~ar~g---sPL~iG~~~--~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~-~~~~~~~~~ 231 (608)
-+|+.-|+ +-=+||.-+ ..+-=.-|-+..--=..++..+.||+.+.+-+.+++.. ++...+.+.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred EEEEECCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCEEEEECCCCEEEEECCCEECCCCCCCCCCCH
T ss_conf 7995227877787448998520000021233467768211588359868999578644055557542343
No 161
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=76.82 E-value=3 Score=20.75 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=42.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 555057752678818999999998630244246511787-63100024101367420
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE-STIARESDFIFPIKAGP 392 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~-S~la~~aD~~i~~~aG~ 392 (608)
.|++.|=+=|=|+=+||++|++.|+++|+.+| |....| +.=+..||..+=+++|.
T Consensus 335 ANsILIK~NQIGTlTET~~Av~lA~~~gY~~v-iSHRSGETEDttIADLAVA~~aGq 390 (430)
T TIGR01060 335 ANSILIKLNQIGTLTETLDAVELAKKAGYTAV-ISHRSGETEDTTIADLAVALNAGQ 390 (430)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 62477502777548889999999996698489-971578983126999999833887
No 162
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=76.74 E-value=3.1 Score=20.65 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC----CCCCCCCC-CCCCCCCCCCCCCCCCHH
Q ss_conf 577526788189999999986302442465117----87631000-241013674200110007
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNV----LESTIARE-SDFIFPIKAGPEIGVAST 399 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~----~~S~la~~-aD~~i~~~aG~Ei~VasT 399 (608)
|++.|-||.|+=.-+.++..+++|+++..|=-. .+-.|-.. .|..=.-.||-|.-|-++
T Consensus 4 i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~AGA~~v~~~~ 67 (165)
T TIGR00176 4 IVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHREAGADAVIVAS 67 (165)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCEEEEEC
T ss_conf 8962588678999999999970799508986089888756527998731332104362788667
No 163
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.60 E-value=5.4 Score=19.00 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=11.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 244246511787631000241013674200
Q gi|254780943|r 364 GLTIGSLVNVLESTIARESDFIFPIKAGPE 393 (608)
Q Consensus 364 g~~tiaItN~~~S~la~~aD~~i~~~aG~E 393 (608)
|++++.| +-..|..+..+|..+++.-|-+
T Consensus 188 Gaklvvi-dPr~t~ta~~Ad~~l~irPGtD 216 (565)
T cd02754 188 GAKIIVV-DPRRTRTADIADLHLPIRPGTD 216 (565)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHCCCCCH
T ss_conf 9889995-6887818998664500489932
No 164
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=75.24 E-value=5.7 Score=18.82 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 505775267881899999999863024424651178763100024101367
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
+++|.+.+.-+. .|+++|+..|.+++||+++-..+ ...|+.||.+
T Consensus 139 d~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn~~p--~~idypIP~N 183 (205)
T pfam00318 139 DLVIVVDPNKEH----IAIKEASKLGIPVIAIVDTNCDP--DLIDYPIPGN 183 (205)
T ss_pred CEEEEECCCCCH----HHHHHHHHCCCCEEEECCCCCCC--CCCCEEEECC
T ss_conf 869985786453----89999987599756540599995--4387788578
No 165
>pfam11004 DUF2843 Protein of unknown function (DUF2843). This bacterial family of proteins has no known function.
Probab=75.10 E-value=3.5 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 54307999999998625667314304
Q gi|254780943|r 300 TSYLAGLVGKFWFERLARLKVEIDVS 325 (608)
Q Consensus 300 TSy~Aal~~~~~~e~~~~i~v~v~~a 325 (608)
.--||+|.|+|++|+-.-+|+....-
T Consensus 239 qv~HAamsGQ~mLEQTfyLp~~a~~~ 264 (281)
T pfam11004 239 QVSHAAMSGQHMLEQTFYLPPEAMKD 264 (281)
T ss_pred CCHHHHHCCHHHHHHHHCCCHHHCCC
T ss_conf 40777751077665130178878218
No 166
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=74.23 E-value=4.5 Score=19.52 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=44.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 445550577526788189999999986302442465117876310002410136742
Q gi|254780943|r 335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG 391 (608)
Q Consensus 335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG 391 (608)
..+-+++|.|--|+...-.-.-.+.++++|+++ .|.|-..+++...+|..|.-.||
T Consensus 212 ~~~aDlllviGTSl~V~PA~~l~~~a~~~g~~v-viiN~~~T~~D~~ad~~i~~~~~ 267 (285)
T PRK05333 212 LDAADAVLVVGSSLMVYSGYRFCVWAARQGKPI-AALNLGRTRADPLLTLKVEASCA 267 (285)
T ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCCCCEEEEEECCHH
T ss_conf 862999999787842252136899999779929-99899899998535399918899
No 167
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.94 E-value=5.1 Score=19.17 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 889999768150689998999978988972476156
Q gi|254780943|r 91 EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEV 126 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEv 126 (608)
-++.|+=.|+=.+..+++. ..+.|....| |.|+
T Consensus 73 ~d~vV~SPgI~~~~p~~~~-a~~~~i~v~~--~~el 105 (450)
T PRK02472 73 FDLMVKNPGIPYDNPMVEE-ALEKGIPIIT--EVEL 105 (450)
T ss_pred CCEEEECCCCCCCCHHHHH-HHHCCCCEEE--HHHH
T ss_conf 8799989987999999999-9986996743--8788
No 168
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=73.76 E-value=6.2 Score=18.58 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 5057752678818999999998630244246511787631000241013674
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a 390 (608)
+++|.+.+.-|. .|++.|++.|.+++||+++-..| ...|+.||.|-
T Consensus 159 d~viv~d~~~e~----~AV~EA~kl~IPvI~ivDTn~dP--~~idypIP~ND 204 (255)
T PRK05299 159 DALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCDP--DGVDYPIPGND 204 (255)
T ss_pred CEEEEECCCCCH----HHHHHHHHCCCCEEEEECCCCCC--CCCCEEECCCC
T ss_conf 879984785337----99999997599888762489996--65865533775
No 169
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=73.52 E-value=5.6 Score=18.90 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=37.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 44555057752678818999999998630244246511787631000241013
Q gi|254780943|r 335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
..+-+++|.+--|+...-.-.-++.|+++|+++ .+.|...+++...+|.+|.
T Consensus 153 ~~~aDlllviGTSl~V~Paa~l~~~a~~~g~~v-viiN~~~T~~d~~ad~~i~ 204 (206)
T cd01410 153 ACRADLFLCLGTSLQVTPAANLPLKAARAGGRL-VIVNLQPTPKDKLADLVIH 204 (206)
T ss_pred HHHCCEEEEECCCCEECCHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCEEEE
T ss_conf 984998999767955522767899999759909-9989999999842248983
No 170
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.04 E-value=6.4 Score=18.46 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999986302442465117876310002410136742001100078889999999999999776212
Q gi|254780943|r 355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRG 421 (608)
Q Consensus 355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g 421 (608)
.|++.|+..|.+++|++++-.+| ...|+.||.|- ++--|--+.+.++|-.+.+.++
T Consensus 170 iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~Nd---------da~rsi~Li~~~lA~ai~e~r~ 225 (252)
T COG0052 170 IAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGND---------DAIRSIALIYWLLARAILEGRG 225 (252)
T ss_pred HHHHHHHHCCCCEEEEECCCCCC--CCCCEEECCCC---------HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999997599989984189997--65765522887---------0898999999999999998743
No 171
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=72.00 E-value=5.8 Score=18.76 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=34.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 5550577526788189999999986302442465117876310002410136742
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAG 391 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG 391 (608)
+-+++|.+--|+...-.-.-++.++++|++++ +.|...+++...+|.++.-.||
T Consensus 177 ~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vv-iiN~~~t~~d~~ad~~i~g~~~ 230 (239)
T PRK00481 177 EADLFIVIGTSLVVYPAAGLPHEARAHGAKTV-EINLEPTPLDSQFDLVIRGKAG 230 (239)
T ss_pred CCCEEEEECCCCEECCHHHHHHHHHHCCCEEE-EECCCCCCCCCCCCEEEECCHH
T ss_conf 29989996788554067776999997699099-9829999998733889979899
No 172
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=71.94 E-value=6.8 Score=18.29 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHHHCCC
Q ss_conf 65510352036543-0799999999862566
Q gi|254780943|r 289 NISGLLVSSCGTSY-LAGLVGKFWFERLARL 318 (608)
Q Consensus 289 ~~~~I~~vGcGTSy-~Aal~~~~~~e~~~~i 318 (608)
+.+.++|||==+|= |||+.|.||.++-+.+
T Consensus 168 ~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t 198 (566)
T TIGR02477 168 KLDGLVIIGGDDSNTNAALLAEYFAKKGLKT 198 (566)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8964899747986799999999999738992
No 173
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.43 E-value=7 Score=18.22 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999986302442465117876310002410136742001100078889999999999999776212001577632279
Q gi|254780943|r 354 LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIR 433 (608)
Q Consensus 354 i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~ 433 (608)
...++.++++|++.+.| +-..|.++..+|..+++.-|-+.++ ++.|+...+. .+..+.+-..++..
T Consensus 176 ~~~~~~a~~~Gaklivi-dPr~t~ta~~Ad~~l~irPGtD~al-----------~~a~~~~ii~--e~l~D~~fv~~~t~ 241 (454)
T cd02755 176 ARRLMKALENGAKVVVV-DPRFSELASKADEWIPIKPGTDLAF-----------VLALIHVLIS--ENLYDAAFVEKYTN 241 (454)
T ss_pred HHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHCCCCCCCHHHH-----------HHHHHHHHHH--CCCCCHHHHHHHCC
T ss_conf 99999999759979997-1777648896543407799965999-----------9888788987--68867688998556
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCC-E-EEEECCC
Q ss_conf 99875--------999999999767744677987420361-4-5521366
Q gi|254780943|r 434 SLVEI--------PRKMFDVLQNIYSQIEKLCCGLAKCQT-L-LYVGRGS 473 (608)
Q Consensus 434 ~L~~l--------p~~i~~~l~~~~~~i~~~a~~~~~~~~-~-~~lG~G~ 473 (608)
.+..+ |+...++-.-..+.++++|+.+...+. . +..|.|.
T Consensus 242 g~~~~~~~~~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~~~~~~g~~~ 291 (454)
T cd02755 242 GFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAAAPHAVVDPGWRG 291 (454)
T ss_pred CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 29999999763498999876299799999999999705996999778662
No 174
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.40 E-value=5.8 Score=18.79 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=26.6
Q ss_pred CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 2010012334455505775267881899999999863024424651178
Q gi|254780943|r 326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
+||.|+..--..-.++++|+-.+.-.|.-..++..++.|..++=+|++.
T Consensus 28 TEF~YR~~~~~~A~V~vGi~~~~~~~e~~~l~~~L~~~gy~~~DlsdnE 76 (85)
T cd04906 28 TEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred EEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf 0357743787637999998727957899999999998799717787688
No 175
>KOG2670 consensus
Probab=70.34 E-value=7.3 Score=18.09 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 5505775267881899999999863024424651178-76310002410136742001
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL-ESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~-~S~la~~aD~~i~~~aG~Ei 394 (608)
++|.+-+-|=|.-+++++|.+.+++.|--++ +.... +..=...+|.++-+.+|.=.
T Consensus 340 N~LLlKvNQIGtvtEsieA~~~a~~~GwgvM-vSHRSGETeDtFIaDL~VGl~tgqIK 396 (433)
T KOG2670 340 NALLLKVNQIGTVTESIEAAKLARSAGWGVM-VSHRSGETEDTFIADLVVGLGTGQIK 396 (433)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 4157530115304999999999987596078-75257886430266633210124012
No 176
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=70.18 E-value=7.4 Score=18.03 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=9.6
Q ss_pred CCCCCEEEECCCCCCC
Q ss_conf 0896136613762011
Q gi|254780943|r 182 HGEGEMFVGSDVTALT 197 (608)
Q Consensus 182 ~~~~~~~vaSd~~al~ 197 (608)
...=+.+++||..-|+
T Consensus 84 iatmGvIvg~dipMfl 99 (472)
T COG2213 84 IATMGVIVGADIPMFL 99 (472)
T ss_pred EEEEEEEECCCCHHHH
T ss_conf 2444666437826888
No 177
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=69.60 E-value=2.3 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986302442465117876310002410136742001
Q gi|254780943|r 357 LRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 357 l~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
|...|+.|.++|-= ||| ..|--++-.-|+|.
T Consensus 146 L~~t~~LGY~~vFW------SlA-y~DW~~D~Q~G~~~ 176 (225)
T TIGR02884 146 LAYTKELGYKTVFW------SLA-YKDWEVDKQKGKEY 176 (225)
T ss_pred HHHHHHCCCCEEEE------EEE-ECCCCCCCCCCHHH
T ss_conf 99999748821100------122-02677698778777
No 178
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=69.33 E-value=7.7 Score=17.91 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6889999999982798089995653210001346627986887815665899999999999
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAY 585 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy 585 (608)
+|+. ++.|.+..|=.|++|.|..-. .+.. .+.+|.+++-.-++-..+ +++|=
T Consensus 168 ~E~I--Av~EA~kLgIPvvA~vDTNCd--Pd~v---D~~IPgNDDairSi~L~~--~~~Ad 219 (227)
T TIGR01011 168 KEKI--AVAEARKLGIPVVAIVDTNCD--PDVV---DYPIPGNDDAIRSIRLLT--SLIAD 219 (227)
T ss_pred CCHH--HHHHHHHCCCCEEEEECCCCC--CCCC---CCCCCCCCCHHHHHHHHH--HHHHH
T ss_conf 1068--999973379978987047888--8866---502579730589999999--99999
No 179
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=68.44 E-value=8 Score=17.79 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=12.3
Q ss_pred CCCCCC-C-CCCCCCCCCCCCCCHH
Q ss_conf 310002-4-1013674200110007
Q gi|254780943|r 377 TIARES-D-FIFPIKAGPEIGVAST 399 (608)
Q Consensus 377 ~la~~a-D-~~i~~~aG~Ei~VasT 399 (608)
.|||+. | -++++..|-|--.|+|
T Consensus 137 ~iA~~~Pdr~VVf~aiGFETTaP~T 161 (384)
T TIGR00075 137 KIAKENPDRKVVFFAIGFETTAPTT 161 (384)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 9998687994799961551261469
No 180
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=67.99 E-value=4.8 Score=19.36 Aligned_cols=109 Identities=26% Similarity=0.326 Sum_probs=65.3
Q ss_pred EEECC--CCCCHHHHHHHHHHHHCCCCCEEEEC------CHHHCCCC--CCCCCCEEEEECCCCCCHHH--------HHH
Q ss_conf 52036--54307999999998625667314304------20100123--34455505775267881899--------999
Q gi|254780943|r 295 VSSCG--TSYLAGLVGKFWFERLARLKVEIDVS------SEFRYRDF--VYSSKWASLFISQSGETADT--------LAS 356 (608)
Q Consensus 295 ~vGcG--TSy~Aal~~~~~~e~~~~i~v~v~~a------sEf~y~~~--~~~~~tlvI~iSQSGeT~dt--------i~A 356 (608)
|-|+| =|=--+|.|+| .-+.+.|-+-+. -||.-.+. ---++++| .++-|=+|+=. ...
T Consensus 164 FAGSGVGKSTLLGMiAr~---t~ADV~VIALIGERGREV~EFiE~~LG~eGl~kSVV-VVATSD~spl~R~~aA~~A~~i 239 (439)
T TIGR02545 164 FAGSGVGKSTLLGMIARY---TEADVNVIALIGERGREVKEFIEDDLGEEGLKKSVV-VVATSDESPLMRIRAAYAATAI 239 (439)
T ss_pred ECCCCHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEE-EEECCCCCHHHHHHHHHHHHHH
T ss_conf 337744478898887506---658878998444656643135543035110254079-9827998689998888999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99986302442465117876310002410136742001100-----0788899999999-9999977
Q gi|254780943|r 357 LRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA-----STKAFTCQLLVLV-IMAIYAG 417 (608)
Q Consensus 357 l~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va-----sTKsftaql~~l~-llal~l~ 417 (608)
.++.|++|..++-+-- ||+|.|- |-+|||.| +||+||.++..++ -|.=..|
T Consensus 240 AEYFRDqGk~VLL~~D----SlTRFAm------AqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG 296 (439)
T TIGR02545 240 AEYFRDQGKDVLLLMD----SLTRFAM------AQREIGLAAGEPPTTKGYPPSVFSELPRLLERAG 296 (439)
T ss_pred HHHHHHCCCCEEEEEC----HHHHHHH------HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999864983477621----1788998------9889998717876667897048999999998708
No 181
>pfam10079 DUF2317 Uncharacterized protein conserved in bacteria (DUF2317). Members of this family of hypothetical bacterial proteins have no known function.
Probab=67.67 E-value=6.3 Score=18.53 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999899997898897247615678887634320010267799999988751222010046872
Q gi|254780943|r 104 FSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPH 167 (608)
Q Consensus 104 ~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~~p~ 167 (608)
-..++.-|..--..+....-++-+..++...+.++.++.+|+..++..+=|.|.+++++.++|.
T Consensus 174 ~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~y~~~~tl~~af~~l~~~LF~~~GLvilD~~d~~ 237 (541)
T pfam10079 174 TEGLREVLEEFFAELGETEYTEELLELLEEAYLESETLADAFARLMNELFADYGLVLLDSDDPE 237 (541)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCCHH
T ss_conf 8999999999998748984199999999999756899999999999999856897998899999
No 182
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=66.60 E-value=8.7 Score=17.55 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88189999999986302442465117876310002410136742001
Q gi|254780943|r 348 GETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 348 GeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
-.+..+.+|++. ...+.+...--+.-++.||++||-..--|.
T Consensus 402 pd~~~~~~al~k-----ldfvVv~D~~~teTa~~ADvVLPaat~~Er 443 (567)
T cd02765 402 PDRDRWLKVMKN-----LDFIVVVDIFHTPTVRYADIVLPAAHWFEV 443 (567)
T ss_pred CCHHHHHHHHHC-----CCCEEEEECEECHHHHHCCEEECCCCCCEE
T ss_conf 068999999861-----482898504637657756876246540125
No 183
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=66.23 E-value=5.9 Score=18.73 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 18999999998630244246511787
Q gi|254780943|r 350 TADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 350 T~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
-+.+.++++.+|.+|.+|..||||.-
T Consensus 107 ~p~m~~~i~~~~~~Gfkt~~lTNN~~ 132 (228)
T TIGR02247 107 LPEMVKAIKSLRAKGFKTALLTNNFY 132 (228)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 87899999999757775888616730
No 184
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.12 E-value=8.9 Score=17.48 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=23.5
Q ss_pred CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 8899997681506899989999789889724761567
Q gi|254780943|r 91 EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVI 127 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi 127 (608)
-++.|+=-|+=.+..++++ ..++|....| |-|..
T Consensus 77 ~d~vV~SPGI~~~~p~l~~-a~~~gi~vis--eiel~ 110 (476)
T PRK00141 77 YSIVVTSPGWRPDSPLLVD-AQSAGLEVIG--DVELA 110 (476)
T ss_pred CCEEEECCCCCCCCHHHHH-HHHCCCCEEE--HHHHH
T ss_conf 9999989978997999999-9987995771--99999
No 185
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=64.59 E-value=9.5 Score=17.29 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=36.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4555057752678818999999998630244246511787631000241013
Q gi|254780943|r 336 SSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 336 ~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
.+-+++|.+--|+.+.-.-.-.+.|+++|++++ +.|-..+++...+|.+|.
T Consensus 170 ~~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iiN~~~T~~D~~adl~I~ 220 (222)
T cd01413 170 KEADLFIVLGSSLVVYPANLLPLIAKENGAKLV-IVNADETPFDYIADLVIQ 220 (222)
T ss_pred HCCCEEEEECCCCEEHHHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCEEEE
T ss_conf 739989997878645216578999997699199-989999999844228983
No 186
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=63.13 E-value=10 Score=17.11 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=35.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 036543079999999986256673143042010012334455505775267881899999999863--024424651178
Q gi|254780943|r 297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRT--QGLTIGSLVNVL 374 (608)
Q Consensus 297 GcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~--~g~~tiaItN~~ 374 (608)
|+|||--.+-.-+-.+.+ .++.+.|...+- .+ ...+.++| |+|-+ ..+.||+ -++..++|.|-.
T Consensus 10 GmGSSaMgas~lrk~lk~-~gl~i~V~n~aI---~~-lp~dadlV--Vt~~~-------L~~rAk~~~p~a~~i~v~nfL 75 (87)
T cd05567 10 GMGSSAMGASVLRKKLKK-AGLEIPVTNSAI---DE-LPSDADLV--VTHAS-------LTDRAKKKAPQAQHLSVDNFL 75 (87)
T ss_pred CCCHHHHHHHHHHHHHHH-CCCCCEEEEEEH---HH-CCCCCCEE--EEHHH-------HHHHHHHHCCCCEEEEHHHHC
T ss_conf 985899999999999998-499836998016---54-99864388--86699-------999999768998899658725
Q ss_pred CCCC
Q ss_conf 7631
Q gi|254780943|r 375 ESTI 378 (608)
Q Consensus 375 ~S~l 378 (608)
+++-
T Consensus 76 ~~~~ 79 (87)
T cd05567 76 NTPE 79 (87)
T ss_pred CCHH
T ss_conf 8877
No 187
>pfam05198 IF3_N Translation initiation factor IF-3, N-terminal domain.
Probab=62.76 E-value=10 Score=17.06 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=39.7
Q ss_pred CEEEEECCCCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 505775267881---8999999998630244246511787631000241013
Q gi|254780943|r 339 WASLFISQSGET---ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 339 tlvI~iSQSGeT---~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
.-|-.|...|+- ..+-+|++.|++.|.-.+-|..+.+-|+.|..|+.-+
T Consensus 13 ~~VrlI~~~G~~lGv~~~~eAl~~A~~~~LDLV~vs~~a~PPVcki~DygK~ 64 (76)
T pfam05198 13 REVRLIDEDGEQLGVVSRAEALRLAEEKGLDLVEISPNADPPVCKIMDYGKF 64 (76)
T ss_pred CEEEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHH
T ss_conf 9999988999296617699999999984996899899999988899627118
No 188
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=60.45 E-value=10 Score=17.08 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=6.6
Q ss_pred HHHHHHCCCEEEEEEC
Q ss_conf 9999827980899956
Q gi|254780943|r 532 IQEIVTRGGRVIFITD 547 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~~ 547 (608)
+++++ -||+.++.-.
T Consensus 160 ~~QL~-~gGrLV~Pvg 174 (205)
T PRK13944 160 VRQLK-DGGVLVIPVE 174 (205)
T ss_pred HHHCC-CCCEEEEEEC
T ss_conf 98548-7979999987
No 189
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=60.09 E-value=2.9 Score=20.83 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=27.1
Q ss_pred CCEEEEEE--CCC---HHHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 87189994--480---1468-899999999827980899956532
Q gi|254780943|r 512 GTFVIAIA--PYD---RFFQ-KTLSNIQEIVTRGGRVIFITDEEG 550 (608)
Q Consensus 512 ~~~vi~i~--~~~---~~~~-k~~s~~~Ei~arg~~vi~I~~~~~ 550 (608)
+.|.+++. |+. +.-| ...+++.++|+||+.|++||....
T Consensus 483 G~P~lvvLDEPNsNLD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~ 527 (556)
T TIGR01842 483 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 527 (556)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 798378732889876617899999999999867972899841068
No 190
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=59.96 E-value=11 Score=16.74 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76310002410136742001100078889999999-----9-99999776212001577632279998759999999997
Q gi|254780943|r 375 ESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQN 448 (608)
Q Consensus 375 ~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~ 448 (608)
+....+.-|..+-++|-+|.+-||| ||+.++.- | -++..++-..|-+..-.-++.++-|..+-+.+.. ..
T Consensus 217 ~~~~~~~ld~~liLHADHE~gNaST--ft~rvv~St~sD~ysaisAai~aL~GPLHGGANe~Vl~ml~~i~~~~g~--~~ 292 (426)
T cd06103 217 DEEFTDLMRLYLTLHSDHEGGNVSA--HTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGK--DV 292 (426)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CC
T ss_conf 8289999999998964314887205--7776663468879999999988715887677289999999999987288--88
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 677446779874203614552136
Q gi|254780943|r 449 IYSQIEKLCCGLAKCQTLLYVGRG 472 (608)
Q Consensus 449 ~~~~i~~~a~~~~~~~~~~~lG~G 472 (608)
..+.++++.++..+.+.. +.|-|
T Consensus 293 s~e~v~~~v~~~l~~~~~-imGfG 315 (426)
T cd06103 293 SDEELEKYIWDTLNSGRV-VPGYG 315 (426)
T ss_pred CHHHHHHHHHHHHHCCCC-CCCCC
T ss_conf 889999999998716994-32678
No 191
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=59.53 E-value=11 Score=16.73 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=10.3
Q ss_pred EEECCCCHHHHHHHH
Q ss_conf 521366449999999
Q gi|254780943|r 468 YVGRGSSYPLALEGA 482 (608)
Q Consensus 468 ~lG~G~~y~~A~EgA 482 (608)
+=|+|+..|+.++..
T Consensus 337 VRG~GLmlG~e~~~~ 351 (402)
T TIGR00707 337 VRGKGLMLGIELEAP 351 (402)
T ss_pred EECCEEEEEEEECCC
T ss_conf 323123465564278
No 192
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=59.44 E-value=10 Score=17.07 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=7.0
Q ss_pred HHHHHHCCCEEEEEEC
Q ss_conf 9999827980899956
Q gi|254780943|r 532 IQEIVTRGGRVIFITD 547 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~~ 547 (608)
++++ +-||+.++...
T Consensus 162 ~~qL-~~gGrLV~Pig 176 (213)
T PRK00312 162 LDQL-AEGGILVAPIG 176 (213)
T ss_pred HHHC-CCCCEEEEEEC
T ss_conf 9845-32979999980
No 193
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=58.81 E-value=12 Score=16.60 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCC--EEEECCHHHCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999986256673--143042010012--334455505775267881899999999863024424651
Q gi|254780943|r 309 KFWFERLARLKV--EIDVSSEFRYRD--FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV 371 (608)
Q Consensus 309 ~~~~e~~~~i~v--~v~~asEf~y~~--~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt 371 (608)
.-|++++..... .|.---||...+ ..+..+-.||.|.-.-++.-|-+.+++||++|+.|++--
T Consensus 75 v~Fi~rl~~~~f~r~V~a~pE~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~ 141 (217)
T COG4015 75 VDFIKRLGRVHFGRRVEAFPENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTISTN 141 (217)
T ss_pred HHHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 8999984757877412036332560105564388899995489854107999999997096476238
No 194
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=57.52 E-value=12 Score=16.46 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=7.2
Q ss_pred HHHHHHCCCEEEEEE
Q ss_conf 999982798089995
Q gi|254780943|r 532 IQEIVTRGGRVIFIT 546 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~ 546 (608)
+++++ -||+.++.-
T Consensus 160 ~~qL~-~gGrLv~pv 173 (205)
T pfam01135 160 IDQLK-EGGRLVIPV 173 (205)
T ss_pred HHHCC-CCCEEEEEE
T ss_conf 99628-797899998
No 195
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=56.75 E-value=13 Score=16.37 Aligned_cols=38 Identities=21% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 55057752678818999999998630244246511787
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
+=+|-+=.|+|-|+|++.|+=.-.-..-.-+-+||+.+
T Consensus 110 ~ivVmGGt~PGhtTDAVAA~lAE~~~ad~L~~~TnVDG 147 (232)
T TIGR02076 110 KIVVMGGTEPGHTTDAVAALLAEFLEADLLINATNVDG 147 (232)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 87986687898528999999976626872699822685
No 196
>TIGR01694 MTAP methylthioadenosine phosphorylase; InterPro: IPR010044 This entry represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterised and its crystal structure has been described , . A misleading characterisation is found for a Sulfolobus solfataricus enzyme which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme . This explains the finding that the characterised enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this misnaming of this enzyme has been carried forward to several publications including a crystal structure . Related sequences include: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilise the MTA/SAH nucleotidase enzyme and a kinase to do this reaction; and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbour-joining trees) and lacks some of the conserved active site residues. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=56.08 E-value=9.9 Score=17.16 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC
Q ss_conf 3445550577526788189999999986302-4424651178763100024101
Q gi|254780943|r 334 VYSSKWASLFISQSGETADTLASLRYMRTQG-LTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 334 ~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g-~~tiaItN~~~S~la~~aD~~i 386 (608)
..+..+++.+.- -|==-+|.+=.++.|+-| +.+|+.|+.|+-.||||++..-
T Consensus 166 ~~~~G~~~yvc~-eGPRFsT~AEs~~~~~~Gk~~~vGMT~~PEa~LARElel~Y 218 (263)
T TIGR01694 166 VHDGGDLTYVCT-EGPRFSTRAESRLFKSWGKADVVGMTGLPEAVLARELELCY 218 (263)
T ss_pred EEECCCEEEEEE-ECCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHH
T ss_conf 787587899983-16876738999999981287575265268999987405567
No 197
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=56.07 E-value=13 Score=16.30 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=15.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 56551035203654307999999
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKF 310 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~ 310 (608)
+.-++|+=||+||-|+||+.++.
T Consensus 74 ~pg~rVLEIGTGSGYqAAlLA~L 96 (317)
T PRK13943 74 DKGMRVLEIGGGTGYNAAVMSRV 96 (317)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH
T ss_conf 99986899657743899999998
No 198
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=55.64 E-value=13 Score=16.25 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=16.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 50577526788189999999986302442465117876310002410
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFI 385 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~ 385 (608)
+++|.|--|+...-.-.-++.++++|++++ +.|-..++....+|.+
T Consensus 169 DlllvvGTSl~V~pa~~l~~~a~~~g~~vi-iiN~~~t~~d~~ad~~ 214 (218)
T cd01407 169 DLLLVIGTSLQVYPAAGLPLYAPERGAPVV-IINLEPTPADRKADLV 214 (218)
T ss_pred CEEEEECCCCEECCHHHHHHHHHHCCCCEE-EECCCCCCCCCEEEEE
T ss_conf 979995678576327789999997699199-9879999998710289
No 199
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=55.27 E-value=14 Score=16.21 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 577526788189999999986302442465117
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNV 373 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~ 373 (608)
+++-|.||.|+=+-..++..+++|.++-.|=..
T Consensus 6 ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~ 38 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPALSARGLRVAVIKHD 38 (159)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 996799999999999999999779859899734
No 200
>CHL00067 rps2 ribosomal protein S2
Probab=54.36 E-value=14 Score=16.12 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 505775267881899999999863024424651178763100024101367
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
+++|.+.+.-|.. |++.|++.|.+++||+++-..| ...|+.||.+
T Consensus 159 d~iii~d~~~e~~----ai~Ea~kL~IPvIaivDTn~~p--~~idypIP~N 203 (227)
T CHL00067 159 DIVIIVDQQEEYT----ALRECIKLGIPTISIVDTNCDP--DLADIPIPAN 203 (227)
T ss_pred CEEEEECCCCCHH----HHHHHHHCCCCEEEEEECCCCC--CCCCEEEECC
T ss_conf 7699967753379----9999987599989996389997--7577675378
No 201
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=53.96 E-value=14 Score=16.07 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf 677999999887512220100-4687238999749960776089613661376
Q gi|254780943|r 142 KETMQKLMQCLTGSYSIAVIF-EDDPHSIIVARKGPPLIIGHGEGEMFVGSDV 193 (608)
Q Consensus 142 ~~ai~~~~~~l~G~ya~~il~-~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~ 193 (608)
.||+..++|-.+ .|+.-.-. .++.-+|+++. |. +-|++=+..-.|||.
T Consensus 111 aEAvEtA~KLAR-~WgY~~K~ip~~kA~ii~~~-GN--FhGRTlgA~S~Std~ 159 (426)
T TIGR01885 111 AEAVETALKLAR-KWGYEVKGIPRNKAKIIAAS-GN--FHGRTLGAVSASTDS 159 (426)
T ss_pred HHHHHHHHHHHH-HHCCCCCCCCCCCEEEEEEC-CC--CCCHHHHHHHHCCCC
T ss_conf 347999999999-74413578557623899853-88--733035443202672
No 202
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=53.78 E-value=8.6 Score=17.60 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=29.9
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHH
Q ss_conf 7526788189999999986302442465117876310002410136----742001100078889
Q gi|254780943|r 343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI----KAGPEIGVASTKAFT 403 (608)
Q Consensus 343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~----~aG~Ei~VasTKsft 403 (608)
.|..=||=+ ++.+|.|++.|..|+|+= |+..|.+-++..= +.||- +|.|||.
T Consensus 6 lIANRGEIA--~RIiRAC~ElGi~TVAVy----S~aD~dalHV~LADEavCIGea---~S~kSYL 61 (451)
T TIGR00514 6 LIANRGEIA--LRIIRACKELGIATVAVY----STADRDALHVLLADEAVCIGEA---PSAKSYL 61 (451)
T ss_pred EEECCHHHH--HHHHHHHHHCCCCEEEEC----CHHHHHHHHHHHHCCCCCCCCC---HHHCCCC
T ss_conf 995260678--899998886498639860----0441332343430253006862---2112441
No 203
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=53.61 E-value=6.3 Score=18.54 Aligned_cols=142 Identities=21% Similarity=0.302 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCC
Q ss_conf 99999887512220100468723899974996077608961366137620111110379827651889730574100333
Q gi|254780943|r 146 QKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQ 225 (608)
Q Consensus 146 ~~~~~~l~G~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~ 225 (608)
-.++..+.+-|-.+-|+...|+. +|| |+ +.|-||+..+.--.--++ |+..|-.-|+...+.+
T Consensus 32 m~~I~qLi~rYn~vSmdTEFpGv--vAr---Pi-------G~FkSs~dyhYQtlraNV------D~LkiIQlGlsLSDe~ 93 (299)
T COG5228 32 MAVIRQLISRYNHVSMDTEFPGV--VAR---PI-------GTFKSSVDYHYQTLRANV------DFLKIIQLGLSLSDEN 93 (299)
T ss_pred HHHHHHHHHHCCCEEECCCCCCE--EEC---CC-------CCCCCCCHHHHHHHHCCC------CHHHHHHEEEEECCCC
T ss_conf 99999999757800431556740--302---43-------334354227889886051------0320200000410302
Q ss_pred CCCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECC------
Q ss_conf 22210001100012100001407899999974178999998715747664521111000023565510352036------
Q gi|254780943|r 226 GYEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCG------ 299 (608)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcG------ 299 (608)
|++ +.-...|.. +|.+=..|||+-| +.+.-+...+++...... .++...++.+ +++++|
T Consensus 94 GN~---P~~~sTWQF------NF~F~l~~dmya~-ESieLL~ksgIdFkkHe~-~GI~v~eF~e----lLm~SGLvm~e~ 158 (299)
T COG5228 94 GNK---PNGPSTWQF------NFEFDLKKDMYAT-ESIELLRKSGIDFKKHEN-LGIDVFEFSE----LLMDSGLVMDES 158 (299)
T ss_pred CCC---CCCCCEEEE------EEEECCHHHHCCH-HHHHHHHHCCCCHHHHHH-CCCCHHHHHH----HHHCCCCEECCC
T ss_conf 999---999732688------8875501200356-889999980887556766-3978999999----986267232141
Q ss_pred ---CCCCHHHHHHHHHHHHCCCCC
Q ss_conf ---543079999999986256673
Q gi|254780943|r 300 ---TSYLAGLVGKFWFERLARLKV 320 (608)
Q Consensus 300 ---TSy~Aal~~~~~~e~~~~i~v 320 (608)
-+||+|.--.|++.-++..|.
T Consensus 159 VtWitfHsaYDfgyLikilt~~pl 182 (299)
T COG5228 159 VTWITFHSAYDFGYLIKILTNDPL 182 (299)
T ss_pred EEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 579995210008999999836988
No 204
>PRK07574 formate dehydrogenase; Provisional
Probab=52.86 E-value=11 Score=16.89 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=23.6
Q ss_pred CCEECCHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 6815068999899997898897247615
Q gi|254780943|r 98 NGIIENFSRLKKEHFSSQQVFLTETDTE 125 (608)
Q Consensus 98 NG~I~N~~elr~~l~~~g~~f~s~tDsE 125 (608)
=|.++|-.-||+.|+.+||.+...+|.+
T Consensus 51 lg~~~~elglr~~le~~gh~~v~t~dk~ 78 (385)
T PRK07574 51 LGSVSGELGLRTFLEERGHELVVTSDKD 78 (385)
T ss_pred EEECCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 2223330105888985591699965888
No 205
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=52.65 E-value=15 Score=15.93 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=11.0
Q ss_pred HHHHCCCCCHHHCC
Q ss_conf 42211442324314
Q gi|254780943|r 489 SYLHAEGYAAGELK 502 (608)
Q Consensus 489 syihaeg~~agE~k 502 (608)
.+||++||.+||+|
T Consensus 88 G~iWa~Gy~sgelk 101 (229)
T COG4229 88 GMIWAHGYESGELK 101 (229)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 68987204457504
No 206
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.99 E-value=15 Score=15.86 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999863024424651178763100024101367420011
Q gi|254780943|r 356 SLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIG 395 (608)
Q Consensus 356 Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~ 395 (608)
.+..+|++|++++.|- -.-|..++.+|..|++..|-+.+
T Consensus 185 ~~~~ak~~GaklIvID-Pr~t~ta~~AD~wl~irPGTD~A 223 (523)
T cd02757 185 RIWGGKMDQAKVVVVD-PRLSNTAAKADEWLPIKPGEDGA 223 (523)
T ss_pred HHHHHHHCCCEEEEEC-CCCCHHHHHHHCCCCCCCCCHHH
T ss_conf 9999986798599971-63472788863235878897799
No 207
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=51.33 E-value=16 Score=15.79 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=34.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCC
Q ss_conf 77526788189999999986302442465117876--310002410136742
Q gi|254780943|r 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLES--TIARESDFIFPIKAG 391 (608)
Q Consensus 342 I~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S--~la~~aD~~i~~~aG 391 (608)
|.|--.||. .+++++.+|+.|..+++|-.++++ +-.+.+|..+.+..|
T Consensus 4 vLIanrGei--A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~ 53 (109)
T pfam00289 4 VLVANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPG 53 (109)
T ss_pred EEEECCCHH--HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCC
T ss_conf 999888799--99999999986997999963344152256650576534799
No 208
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=51.31 E-value=14 Score=16.10 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8999999998630244246511787
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
.-++++++.+|+.|...+.|||-.|
T Consensus 29 ~Gv~~~l~~~K~~Gy~L~lvTNQSG 53 (178)
T TIGR00213 29 DGVIDALRELKKLGYKLVLVTNQSG 53 (178)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6699999998745827889874565
No 209
>pfam09147 DUF1933 Domain of unknown function (DUF1933). Members of this family are predominantly found in carbapenam synthetase, and are composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined.
Probab=51.26 E-value=16 Score=15.79 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCEECCHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--C
Q ss_conf 6815068999899997-898897247615678887634320010267799999988751222010046872389997--4
Q gi|254780943|r 98 NGIIENFSRLKKEHFS-SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR--K 174 (608)
Q Consensus 98 NG~I~N~~elr~~l~~-~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~~p~~i~~ar--~ 174 (608)
=|.|+|-.-||.-... +|. -..-+|.|++..+..++ | ..++..-+|.|+|-+=++ .+.+.+.. +
T Consensus 54 IGsiyNr~~L~~lag~~eg~-a~v~nD~ElL~~i~~~l---G-------~~aL~LAEGdfcffiEdk--ng~L~liTds~ 120 (201)
T pfam09147 54 IGSLYNKRLLRHLAGHFEGG-VPVVNDAEILYLISTQL---G-------SAALGLAEGDFCFFIEDR--NGTLTVITESR 120 (201)
T ss_pred EEEECCHHHHHHHHHEEECC-CEEECCHHHHHHHHHHH---H-------HHHHHHHCCCEEEEEECC--CCCEEEEECCC
T ss_conf 98740188999865215266-23335188999999986---0-------455544147468999658--97389996578
Q ss_pred C-CCEEEECCCCCE
Q ss_conf 9-960776089613
Q gi|254780943|r 175 G-PPLIIGHGEGEM 187 (608)
Q Consensus 175 g-sPL~iG~~~~~~ 187 (608)
| +|.++=+.+.-|
T Consensus 121 G~~pv~lV~~~~~W 134 (201)
T pfam09147 121 GQNPVYLVQAGDRW 134 (201)
T ss_pred CCCEEEEEECCCEE
T ss_conf 98617998248778
No 210
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=51.20 E-value=12 Score=16.53 Aligned_cols=84 Identities=26% Similarity=0.344 Sum_probs=49.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCCCEE------------------------EECCHHHCC-CCCC-CCCCEEEE
Q ss_conf 51035203654307999999998625-667314------------------------304201001-2334-45550577
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLA-RLKVEI------------------------DVSSEFRYR-DFVY-SSKWASLF 343 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~-~i~v~v------------------------~~asEf~y~-~~~~-~~~tlvI~ 343 (608)
..|+++|.|+| +|.+.||+-+-. .+.|-+ ..|.||+.. ..+. +.++ ...
T Consensus 22 ~DViiVGAGpS---GLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv~~pA~~~L~e~gI~~~d~~d-g~~ 97 (283)
T TIGR00292 22 SDVIIVGAGPS---GLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVVEKPAKEILDEFGIRYEDEGD-GYV 97 (283)
T ss_pred CCEEEECCCCC---HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCEEECCC-CEE
T ss_conf 06679878974---66899999842998069998511026898664222456136514046888865981335688-548
Q ss_pred ECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
Q ss_conf 526788189999999986302-44246511787631000
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQG-LTIGSLVNVLESTIARE 381 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g-~~tiaItN~~~S~la~~ 381 (608)
|..|=|-..|+.+ .|=+.| ++.+--+.+++ -+.|.
T Consensus 98 Vads~e~~s~l~s--~a~~aGn~Ki~~~~~vED-l~~R~ 133 (283)
T TIGR00292 98 VADSAEFISTLAS--KALQAGNAKIFNGVSVED-LILRD 133 (283)
T ss_pred EEHHHHHHHHHHH--HHHCCCCCEEEEEEEEEE-EEECC
T ss_conf 7236768999999--986588731433368887-78768
No 211
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=51.19 E-value=16 Score=15.78 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310002410136742001100078889999999-----9-9999977621200157763227999875999999999767
Q gi|254780943|r 377 TIARESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIY 450 (608)
Q Consensus 377 ~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~ 450 (608)
...+.-|..+-++|-+|=+-||| ||+.++.- | -++..++-..|-+..-.-++.++-|..+-+.+... ..+
T Consensus 219 ~~~~~l~l~liLHADHeG~N~St--ft~rvv~StlsD~Yssiaaai~aL~GPLHGgANq~Vl~~l~~m~~~ig~~--~~~ 294 (428)
T cd06106 219 DFVDLLRLYIALHGDHEGGNVSA--HTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSK--ATD 294 (428)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC--CCH
T ss_conf 99999999898862136887317--77766634788689999998887268765775899999999999980898--768
Q ss_pred HHHHHHHHHHHCCCCEEEEECC--------CCHHHHHHHHHHH
Q ss_conf 7446779874203614552136--------6449999999999
Q gi|254780943|r 451 SQIEKLCCGLAKCQTLLYVGRG--------SSYPLALEGALKI 485 (608)
Q Consensus 451 ~~i~~~a~~~~~~~~~~~lG~G--------~~y~~A~EgALKl 485 (608)
+.++++..+..+.+.. +.|.| +=+.+-+|-|.|.
T Consensus 295 e~v~~yv~~~l~~g~~-i~GfGHrVyk~~DPRa~~lk~~a~~~ 336 (428)
T cd06106 295 QDIRDYLWKTLKSGRV-VPGYGHAVLRKPDPRFTALMEFAQTR 336 (428)
T ss_pred HHHHHHHHHHHCCCCE-EECCCEECCCCCCCHHHHHHHHHHHH
T ss_conf 9999999985446986-32026010357994799999999998
No 212
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=49.79 E-value=16 Score=15.66 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 5057752678818999999998630-244246511787
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQ-GLTIGSLVNVLE 375 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~-g~~tiaItN~~~ 375 (608)
..+|..|+||.|+- ..+|-+ .++++++|.++.
T Consensus 18 kaIv~~T~sG~tA~-----~iS~~RP~~pI~a~T~~~~ 50 (117)
T pfam02887 18 KAIVVLTESGRTAR-----LVSKYRPGAPIIAVTPNEG 50 (117)
T ss_pred CEEEEECCCCHHHH-----HHHHHCCCCCEEEECCCHH
T ss_conf 99999889877999-----9995499986899659989
No 213
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=49.63 E-value=17 Score=15.62 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=61.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 356551035203654307999999998625---66731430420100123344555057752678818999999998630
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLA---RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQ 363 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~---~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~ 363 (608)
+++.+++.++--+-|+|.--..+. |++++ ++...+. .+ +.+..+.+.++.|.+++ .|.+..++.+|++
T Consensus 114 lkkYkkl~lv~~~~~~~p~~~~~g-f~~Fc~~~~~~~~i~--~~--~~~~~i~kg~~yi~~~d----~dlv~vik~~~~~ 184 (247)
T cd06276 114 LKKYKKLILVFPNKTAIPKEIKRG-FERFCKDYNIETEII--ND--YENREIEKGDLYIILSD----TDLVFLIKKARES 184 (247)
T ss_pred HHCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHCCCEEEE--EC--CCCCEEECCEEEEEECH----HHHHHHHHHHHHC
T ss_conf 732128999918998897899999-999999709854643--12--46640405629999771----8999999999984
Q ss_pred CCCE---EEEECCCCCCCCCCCCCCCC
Q ss_conf 2442---46511787631000241013
Q gi|254780943|r 364 GLTI---GSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 364 g~~t---iaItN~~~S~la~~aD~~i~ 387 (608)
|..+ ++|..--+.++++..+-.+-
T Consensus 185 gl~ip~DisiIgfdd~~~~~~~~p~LT 211 (247)
T cd06276 185 GLLLGKDIGIISYNDTPLKEILRNGIT 211 (247)
T ss_pred CCCCCCCEEEEEECCHHHHHHCCCCCE
T ss_conf 999987369997577428974589861
No 214
>KOG3459 consensus
Probab=49.04 E-value=11 Score=16.75 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCCCHHHCCCCCHHHH----CCCCEEEEEECCC
Q ss_conf 4423243144637880----7987189994480
Q gi|254780943|r 494 EGYAAGELKHGPIALI----TEGTFVIAIAPYD 522 (608)
Q Consensus 494 eg~~agE~kHGP~ali----~~~~~vi~i~~~~ 522 (608)
|--..+||.|||++++ +..++|++.+-++
T Consensus 14 ~~~e~~ef~~Gpls~~~~~~~~~~~vLi~cRnn 46 (114)
T KOG3459 14 EVPEEEEFNTGPLSVLPASVKNNTQVLINCRNN 46 (114)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 153334468686136477764285068883244
No 215
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=47.96 E-value=12 Score=16.50 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 788189999999986302442465
Q gi|254780943|r 347 SGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 347 SGeT~dti~Al~~ak~~g~~tiaI 370 (608)
.|.|+ +.+.+.|++.|+..+.+
T Consensus 331 GGNtA--mD~ARTA~RlGA~~Vti 352 (652)
T PRK12814 331 GGNTA--IDAARTALRLGAESVTI 352 (652)
T ss_pred CCCHH--HHHHHHHHHCCCCEEEE
T ss_conf 88138--99999998748975899
No 216
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=47.59 E-value=18 Score=15.41 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHH--HHHHHCCCCCH-HHCCCCCHHHH--CCCCEEEEEECCCHH--HHHHHHHHHHHHHCCCEE------
Q ss_conf 999999999999--74221144232-43144637880--798718999448014--688999999998279808------
Q gi|254780943|r 476 PLALEGALKIKE--ISYLHAEGYAA-GELKHGPIALI--TEGTFVIAIAPYDRF--FQKTLSNIQEIVTRGGRV------ 542 (608)
Q Consensus 476 ~~A~EgALKlkE--~syihaeg~~a-gE~kHGP~ali--~~~~~vi~i~~~~~~--~~k~~s~~~Ei~arg~~v------ 542 (608)
|+=+=+.|...+ -+|.+|.+.++ .-|+ +|+- ..+.|.+++.++..+ .|++.+.++++ +|||+|
T Consensus 482 P~EqLa~LRa~PN~~vwRP~D~~E~aaa~~---~a~~kas~~~Pt~L~LtRQnLp~l~~T~~~~~~~-~KGgYv~~d~~~ 557 (675)
T TIGR00232 482 PIEQLASLRAIPNLSVWRPADGNETAAAYK---YALEKASQDAPTVLILTRQNLPQLERTESSLEKV-LKGGYVLKDSKG 557 (675)
T ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHH---HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH-HCCCCEEECCCC
T ss_conf 022302332203531623787327899999---9999620589807998057777766427899986-339807872587
Q ss_pred ----EEEECCCCC---------CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf ----999565321---------000134662798688781566589999999999999998387798897986475379
Q gi|254780943|r 543 ----IFITDEEGL---------KRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 (608)
Q Consensus 543 ----i~I~~~~~~---------~~~~~~~~~~i~iP~~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PRnLaKsVTVE 608 (608)
|+|++.... ...+...+.++-+|..+-+. -|=-+|.-++. |.|-.|-||||
T Consensus 558 ~Pd~iliAtGSEV~La~~a~~~L~~~~~kvrVVS~P~~~~f~--------~Qd~~Y~~svl-------p~~V~k~~~~E 621 (675)
T TIGR00232 558 EPDIILIATGSEVQLAVEAAKKLAAENIKVRVVSMPSFDLFD--------KQDEEYRESVL-------PANVTKRLAIE 621 (675)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--------HCCHHHHHHHC-------CCHHHHHHHHH
T ss_conf 940899852736899999999998549857999658646666--------12289887307-------20123546653
No 217
>KOG0830 consensus
Probab=46.66 E-value=15 Score=15.90 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999863024424651178763100024101367420011000788899999999999997762120015
Q gi|254780943|r 355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINE 425 (608)
Q Consensus 355 ~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~ 425 (608)
.++..+---+.+|+++||+. |+| +..|..++++- |+-.+-.+..+||+-...+++|.++.
T Consensus 103 q~~~E~s~~n~p~ialcnTD-SpL-~~VDIAIPcNN---------KG~hSVgl~ww~LareVLrmrgtis~ 162 (254)
T KOG0830 103 QPLTEASYVNLPTIALCNTD-SPL-CYVDIAIPCNN---------KGAHSVGVMWWMLAREVLRMRGTISR 162 (254)
T ss_pred HHHHHHHHCCCCEEEEECCC-CCC-CEEEEEEECCC---------CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 03444420477448874488-841-00133311378---------87522001445412799998754344
No 218
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.49 E-value=8.7 Score=17.54 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=23.1
Q ss_pred ECCCCCCHHHHHHHHHHHHC---CCCCEEEECCHHHCC
Q ss_conf 03654307999999998625---667314304201001
Q gi|254780943|r 297 SCGTSYLAGLVGKFWFERLA---RLKVEIDVSSEFRYR 331 (608)
Q Consensus 297 GcGTSy~Aal~~~~~~e~~~---~i~v~v~~asEf~y~ 331 (608)
|+|-|+.|++.++|+..+-. .+++++..++=..|+
T Consensus 13 GVGKS~va~~LaQY~~~~~~~~~~iDTDpvN~tf~~yk 50 (241)
T PRK13886 13 GVGKSMIAATIAQYKAGKGQKPLCIDTDPVNATFEGYK 50 (241)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCC
T ss_conf 63099999999999983599985560899970534214
No 219
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=46.47 E-value=5.7 Score=18.82 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=8.4
Q ss_pred EEEEECCCCCCH
Q ss_conf 057752678818
Q gi|254780943|r 340 ASLFISQSGETA 351 (608)
Q Consensus 340 lvI~iSQSGeT~ 351 (608)
-+-+.-+||.|.
T Consensus 334 Pik~FDrSGwty 345 (516)
T PRK00960 334 PIKFFDKSGWTY 345 (516)
T ss_pred CEEEEECCCCEE
T ss_conf 657885588626
No 220
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=45.12 E-value=10 Score=17.04 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=40.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 57752678818999999998630244246511787631000241013
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
-+.+..+|=.-+|-.=.+..|..|+.+++.|++|+-.|||++....-
T Consensus 173 GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya 219 (262)
T COG0005 173 GVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVA 219 (262)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 38998328876899999999985888135767848787676278178
No 221
>pfam00585 Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase. Threonine dehydratases pfam00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the pfam01842 domain.
Probab=44.86 E-value=19 Score=15.13 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 689998999978988972476156
Q gi|254780943|r 103 NFSRLKKEHFSSQQVFLTETDTEV 126 (608)
Q Consensus 103 N~~elr~~l~~~g~~f~s~tDsEv 126 (608)
+..+|.+.|...|+.+.-.||.|+
T Consensus 63 e~~~l~~~L~~~gy~~~dls~ne~ 86 (91)
T pfam00585 63 DLDEFIERLEKLGYDYVDLSDNEA 86 (91)
T ss_pred HHHHHHHHHHHCCCCEEECCCCHH
T ss_conf 999999999975998088879999
No 222
>KOG1184 consensus
Probab=44.81 E-value=19 Score=15.12 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=5.6
Q ss_pred CEEEECCCCC
Q ss_conf 6077608961
Q gi|254780943|r 177 PLIIGHGEGE 186 (608)
Q Consensus 177 PL~iG~~~~~ 186 (608)
|-+||.--+.
T Consensus 162 PVYi~vP~n~ 171 (561)
T KOG1184 162 PVYIGVPANL 171 (561)
T ss_pred CEEEECCCCC
T ss_conf 8599821430
No 223
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=44.54 E-value=19 Score=15.18 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 68899999999827980899956532100013466279868
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP 565 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP 565 (608)
.......+++++.+|..+++++.+.. ..+. ++.++.+-
T Consensus 125 ~~~l~~~l~~l~~~g~TvI~vtHd~~--~~~~-aDrii~l~ 162 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLD--VLSS-ADWIIDFG 162 (176)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHH--HHHH-CCEEEEEC
T ss_conf 99999999999987998999947879--9983-99999945
No 224
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=16 Score=15.69 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=6.4
Q ss_pred HHHHHHCCCEE-EEEE
Q ss_conf 99998279808-9995
Q gi|254780943|r 532 IQEIVTRGGRV-IFIT 546 (608)
Q Consensus 532 ~~Ei~arg~~v-i~I~ 546 (608)
+++++. ||+. +.+.
T Consensus 156 l~QL~~-gGrlv~PvG 170 (209)
T COG2518 156 LDQLKP-GGRLVIPVG 170 (209)
T ss_pred HHHCCC-CCEEEEEEC
T ss_conf 985065-988999985
No 225
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=44.04 E-value=20 Score=15.04 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCEEEEECCEECC--HHHHHHHHHHCCC-EEEE------------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8899997681506--8999899997898-8972------------47615678887634320010267799999988751
Q gi|254780943|r 91 EGIAVTHNGIIEN--FSRLKKEHFSSQQ-VFLT------------ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 91 ~~~~vvHNG~I~N--~~elr~~l~~~g~-~f~s------------~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
.-++++||=++.= |.|+|+++-++-. -|.| .+||- |+ + ..+|+.-+++++-|
T Consensus 56 PTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAYvP~~Dty-----IE----K----daSINdeIerlR~S 122 (667)
T TIGR00631 56 PTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTY-----IE----K----DASINDEIERLRLS 122 (667)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCE-----EE----C----CCCHHHHHHHHHHH
T ss_conf 84998577767999999998638677245255203237873214798841-----30----4----55300467677889
Q ss_pred HHHHHHCCCCCCEEEEEE------CCCC-----EEEECCCCCEE----EECCCCCCCCCCCEEEECCC------CEEEEE
Q ss_conf 222010046872389997------4996-----07760896136----61376201111103798276------518897
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVAR------KGPP-----LIIGHGEGEMF----VGSDVTALTLLTDKVTYMED------GDWAII 214 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar------~gsP-----L~iG~~~~~~~----vaSd~~al~~~t~~~~~L~d------gei~~i 214 (608)
=.-.++.++ |-|++|. =|+| +++-...|.-+ +...... +.|.++=+.++. ||++.|
T Consensus 123 AT~SLl~Rr--DVIVVASVScIYGLG~P~~Y~~~~~~l~vG~~~~~~~ll~~LV~-lqY~RNd~~f~RG~FRvrGDVvEI 199 (667)
T TIGR00631 123 ATKSLLERR--DVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE-LQYERNDVDFQRGTFRVRGDVVEI 199 (667)
T ss_pred HHHHHCCCC--CEEEEEEEEEECCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHH-HCEEECCEECCCCCEEEEEEEEEE
T ss_conf 888642378--78999875520688882556422786540785588999988634-030571234057712576318986
Q ss_pred EC
Q ss_conf 30
Q gi|254780943|r 215 RN 216 (608)
Q Consensus 215 ~~ 216 (608)
=+
T Consensus 200 fP 201 (667)
T TIGR00631 200 FP 201 (667)
T ss_pred EC
T ss_conf 34
No 226
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=44.02 E-value=17 Score=15.48 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC
Q ss_conf 889999999982798089995653210001346627986
Q gi|254780943|r 526 QKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL 564 (608)
Q Consensus 526 ~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i 564 (608)
..+...+++++.+|-.+++|+.+-+. .. .+++++.+
T Consensus 209 ~~l~~~l~~l~~~G~Tvi~itH~l~~--~~-~aD~IivL 244 (261)
T cd03271 209 KKLLEVLQRLVDKGNTVVVIEHNLDV--IK-CADWIIDL 244 (261)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECHHH--HH-HCCEEEEC
T ss_conf 99999999999789999998477889--97-38999993
No 227
>pfam00901 Orbi_VP5 Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion.
Probab=43.94 E-value=20 Score=15.03 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=24.9
Q ss_pred HHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHH--HHHHHHHHHHHHHHCCC
Q ss_conf 9827980899956532100013466279868878156658999--99999999999983877
Q gi|254780943|r 535 IVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFS--LPIQMIAYCTAVLIGTD 594 (608)
Q Consensus 535 i~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~~~l~pl~~~--iplQllAy~~A~~~G~d 594 (608)
.|+|+.+.|-+++-.-...-+-...+...+- .++.+.--+.- +-+|-=+-.-|+.-|.-
T Consensus 446 ~RS~~~hPIYlGsm~Y~iSY~ql~~NA~riv-~~~elQ~HiLRGPlhfQRraIl~AL~~Gvk 506 (508)
T pfam00901 446 QRSRGSHPIYLGSMHYDISYAQLKRNAQRIV-NDPELQMHVLRGPLHFQRRAILNALKHGVK 506 (508)
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 8534679845316665100999998899882-889999999718488899999999974755
No 228
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=43.60 E-value=14 Score=16.16 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.3
Q ss_pred CCEEEEECCEECCHHHHH
Q ss_conf 889999768150689998
Q gi|254780943|r 91 EGIAVTHNGIIENFSRLK 108 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~elr 108 (608)
.++++|+||.|.|-..+-
T Consensus 33 DRisLV~~GqiinK~~I~ 50 (179)
T PRK11582 33 DRITLVRRGQIVNKIAIS 50 (179)
T ss_pred HHHEEEECCEEECHHHHH
T ss_conf 563022357655389987
No 229
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=43.30 E-value=20 Score=14.96 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=33.9
Q ss_pred CEEEEECCEE----CCHHHHHHHHHHCCC--EEEECCCHHHHHHHHHHHHH
Q ss_conf 8999976815----068999899997898--89724761567888763432
Q gi|254780943|r 92 GIAVTHNGII----ENFSRLKKEHFSSQQ--VFLTETDTEVIACLLEKFIK 136 (608)
Q Consensus 92 ~~~vvHNG~I----~N~~elr~~l~~~g~--~f~s~tDsEvi~~li~~~~~ 136 (608)
.+.+===||| ..+...+++.++.|+ .|..+||-|+.+..+...++
T Consensus 83 ~illYVGGNlvVGk~df~dV~~rFkeMGfDRVfap~t~~E~v~~~~k~dln 133 (134)
T TIGR01501 83 AILLYVGGNLVVGKTDFEDVEKRFKEMGFDRVFAPQTDLEAVVDALKKDLN 133 (134)
T ss_pred CEEEEECCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 279987676655776736788887645873323698582278999987506
No 230
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102 Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) . Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation . SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=42.89 E-value=21 Score=14.92 Aligned_cols=247 Identities=16% Similarity=0.207 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC----CCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-
Q ss_conf 7899999974178999998715747664521----11100002356551035203654307999999998625667314-
Q gi|254780943|r 248 YRHFMEKEIYEQPEAISRVLSHYINLSDHTI----IPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEI- 322 (608)
Q Consensus 248 y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v- 322 (608)
|+-|=.-=-.|-+..||++.+=++.+.+... +.+.+++ -=+-|==.|||-+-+.|-|+--++.=++
T Consensus 32 f~twk~~t~~eR~~lLr~Wy~Lm~enkddLA~liT~E~GKPL---------~eA~GEv~YaA~ylEWfaEEA~RvyG~~~ 102 (454)
T TIGR01780 32 FKTWKNTTAKERSSLLRKWYELMLENKDDLAKLITLENGKPL---------KEAKGEVLYAASYLEWFAEEAKRVYGDTI 102 (454)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 688871383123789999999988447899999876368962---------67201022332456555300552444413
Q ss_pred ----------------------EECCHHHCCC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ----------------------3042010012------334455505775267881899999999863024424651178
Q gi|254780943|r 323 ----------------------DVSSEFRYRD------FVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 323 ----------------------~~asEf~y~~------~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
+.|..|.-.+ +-+-....+|.-=-+-+=...++-.+.|.+.|.+- ++-|+.
T Consensus 103 ~~s~~~~~r~~v~kQPVGV~a~ITPWNFPaAMITRKagaALAAGCT~i~KPA~~TPlsALaLA~LA~~AG~P~-GVlnVi 181 (454)
T TIGR01780 103 PSSLQSDKRLLVIKQPVGVCAAITPWNFPAAMITRKAGAALAAGCTVIIKPAEQTPLSALALARLAEEAGIPK-GVLNVI 181 (454)
T ss_pred CCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCC-CCCEEE
T ss_conf 6787778637997268766154278887236777334467630682786378888478999999998578999-841356
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7631--0002410136742001100078889999999999-----------99977621200157763227999875999
Q gi|254780943|r 375 ESTI--ARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM-----------AIYAGKVRGYINEEQERELIRSLVEIPRK 441 (608)
Q Consensus 375 ~S~l--a~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ll-----------al~l~~~~g~i~~~~~~~~~~~L~~lp~~ 441 (608)
-|+- |.....+| ..-|=+. ==|||.+.-+-=+| +++||-.-=-|-.++ ..+-++
T Consensus 182 ~g~~~~a~~~G~~L--t~~P~Vr---K~sFTGST~vGKiLM~qsA~tvKkvS~ELGGnAPfIVF~D--------Ad~D~A 248 (454)
T TIGR01780 182 TGSANDAEEVGKVL--TTSPLVR---KVSFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDD--------ADIDQA 248 (454)
T ss_pred CCCCCCHHHHCCEE--CCCCCEE---EEEECCCCHHHHHHHHHHHHHHCEEHHHCCCCCCEEECCC--------CCHHHH
T ss_conf 17640435515000--2688477---6541377178999999613222121232078988302599--------887689
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHH-HHHHC-CCCCHHHCCCCCHHHHCCC
Q ss_conf 9999997677446779874203-------6145521366449999999999997-42211-4423243144637880798
Q gi|254780943|r 442 MFDVLQNIYSQIEKLCCGLAKC-------QTLLYVGRGSSYPLALEGALKIKEI-SYLHA-EGYAAGELKHGPIALITEG 512 (608)
Q Consensus 442 i~~~l~~~~~~i~~~a~~~~~~-------~~~~~lG~G~~y~~A~EgALKlkE~-syiha-eg~~agE~kHGP~ali~~~ 512 (608)
++.++ |.+|.+. +|+| +=++ +--|-|-||.|- .-++- .|+.. ---|||+ |
T Consensus 249 VE~a~----------AsKFRn~GQTCVCaNRly-Vh~~----v~D~Fa~kL~e~V~kl~vG~Gld~-g~t~GPl--I--- 307 (454)
T TIGR01780 249 VEGAM----------ASKFRNAGQTCVCANRLY-VHDS----VYDEFAKKLAEAVKKLKVGDGLDE-GVTVGPL--I--- 307 (454)
T ss_pred HHHHH----------HHHHCCCCCEEECCCEEE-EECC----CCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCC--C---
T ss_conf 99999----------874527996377266346-3156----204889999986331336787588-8412664--3---
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7189994480146889999999982798089995
Q gi|254780943|r 513 TFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFIT 546 (608)
Q Consensus 513 ~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~I~ 546 (608)
+.+..+|..+.+++--++||+|+.=+
T Consensus 308 --------~~~a~~KVe~Hi~DAv~KGAkVv~GG 333 (454)
T TIGR01780 308 --------NEKAVEKVEKHIADAVEKGAKVVTGG 333 (454)
T ss_pred --------CHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf --------65778988998998987299898626
No 231
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675 This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=42.82 E-value=13 Score=16.30 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=48.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHC--CCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 20365430799999999862566731430420100--123344555057752-678818999999998630244246511
Q gi|254780943|r 296 SSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRY--RDFVYSSKWASLFIS-QSGETADTLASLRYMRTQGLTIGSLVN 372 (608)
Q Consensus 296 vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y--~~~~~~~~tlvI~iS-QSGeT~dti~Al~~ak~~g~~tiaItN 372 (608)
++.-..-|+-.+|.+.|-+-.|+.++++.-.-+.| -+|-+-.|---|.|| |||.| ..+..+++.| |-=
T Consensus 285 ~n~~~~~~~PyVG~~AFAHKGGvHvSAv~r~p~TYEHI~P~LVGN~R~I~vSe~aG~S----Nvl~K~~~~G-----~~~ 355 (543)
T TIGR00977 285 VNLPLDENMPYVGESAFAHKGGVHVSAVKRNPKTYEHIDPELVGNKRKIVVSELAGKS----NVLEKLKEFG-----IEI 355 (543)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCH----HHHHHHHHHC-----HHC
T ss_conf 5488534678236632202586577655058874234586431771379982355731----4899998704-----010
Q ss_pred CCCCCCCCC
Q ss_conf 787631000
Q gi|254780943|r 373 VLESTIARE 381 (608)
Q Consensus 373 ~~~S~la~~ 381 (608)
.+.||-.|.
T Consensus 356 D~~~P~~r~ 364 (543)
T TIGR00977 356 DEKSPKVRK 364 (543)
T ss_pred CCCCCHHHH
T ss_conf 578806899
No 232
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.54 E-value=21 Score=14.89 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 881899999999863024424651178763100024101367
Q gi|254780943|r 348 GETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 348 GeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
.+|..+.++++. ..-|.....--|..+..||.+||-.
T Consensus 529 ~n~~~~~e~~~k-----lpfIV~~D~y~sETa~yADlVLPdt 565 (760)
T cd02760 529 WDTATLVDNIAK-----FPFTVSFAYTEDETNWMADVLLPEA 565 (760)
T ss_pred CCHHHHHHHHHC-----CCEEEEEECCCCHHHHHCCEECCCC
T ss_conf 688899999856-----9959998788786777321721666
No 233
>PRK09569 type I citrate synthase; Reviewed
Probab=41.87 E-value=21 Score=14.82 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00241013674200110007888999999-----99-9999977621200157763227999875999999999767744
Q gi|254780943|r 380 RESDFIFPIKAGPEIGVASTKAFTCQLLV-----LV-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQI 453 (608)
Q Consensus 380 ~~aD~~i~~~aG~Ei~VasTKsftaql~~-----l~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i 453 (608)
+..+..+-++|-+|-|-||| ||+.++. +| -++..++-..|-+..-.-++.++-|..+-+.+... +...+.+
T Consensus 222 ~~~rl~liLHADHE~gN~ST--ft~rvv~StlsD~y~siaagi~aL~GPLHGgANq~vl~~l~~~~e~i~~~-~~~~e~i 298 (437)
T PRK09569 222 DVARMYFILHSDHESGNVSA--HTTHLVASALSDAYYAYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLNGV-EPTKEEL 298 (437)
T ss_pred HHHHHHHHHHHCCCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCHHHH
T ss_conf 99999998972136787117--88887751587689999999998358765670589999999999980686-3559999
Q ss_pred HHHHHHHHCCCCEEEEECC
Q ss_conf 6779874203614552136
Q gi|254780943|r 454 EKLCCGLAKCQTLLYVGRG 472 (608)
Q Consensus 454 ~~~a~~~~~~~~~~~lG~G 472 (608)
+++.++-.+.+. .+.|.|
T Consensus 299 ~~~i~~~l~~g~-~i~GfG 316 (437)
T PRK09569 299 TRALWDTLNAGQ-VIPGYG 316 (437)
T ss_pred HHHHHHHHCCCC-CCCCCC
T ss_conf 999997233488-224668
No 234
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=41.75 E-value=22 Score=14.81 Aligned_cols=81 Identities=10% Similarity=0.156 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHCCCCCCE-EEEEECCCCEEEECCCCCEEEEC--------CCCCCCCCCC---EEEE
Q ss_conf 102677999999887-512220100468723-89997499607760896136613--------7620111110---3798
Q gi|254780943|r 139 SSKKETMQKLMQCLT-GSYSIAVIFEDDPHS-IIVARKGPPLIIGHGEGEMFVGS--------DVTALTLLTD---KVTY 205 (608)
Q Consensus 139 ~~~~~ai~~~~~~l~-G~ya~~il~~~~p~~-i~~ar~gsPL~iG~~~~~~~vaS--------d~~al~~~t~---~~~~ 205 (608)
....+-++++-+++. =.-|+ ++|.+.|+- +.-...+-|+.|-.|+.-.+.++ +..--+.|-+ =+-.
T Consensus 60 ~~~i~~vR~~~~~~~~~~vaI-~lDtkGPeIR~g~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~~~~v~Y~~gYnl~~~ 138 (513)
T TIGR01064 60 GKRIENVREASEKLGGRPVAI-LLDTKGPEIRTGEIKGDGEVKLKKGDKVILTTDVKYKGEGSEEKVSVDYKGGYNLVKD 138 (513)
T ss_pred HHHHHHHHHHHHHHCCCCEEE-EEECCCCEEEEEECCCCCCEEECCCCEEEEECCHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 999999999999719950899-9726887799874178875686278879982571342034778668716786556540
Q ss_pred CCCCEEEEEECCCCE
Q ss_conf 276518897305741
Q gi|254780943|r 206 MEDGDWAIIRNSGLT 220 (608)
Q Consensus 206 L~dgei~~i~~~~~~ 220 (608)
++.|+.+.|+++.++
T Consensus 139 v~~G~~iLvDDG~i~ 153 (513)
T TIGR01064 139 VVEGDKILVDDGKIS 153 (513)
T ss_pred CCCCCEEEEECCEEE
T ss_conf 268888987667799
No 235
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=41.61 E-value=18 Score=15.33 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=14.4
Q ss_pred HHHH-HHHHHH-HHHHCCCCCEEEE
Q ss_conf 1279-999999-9763158743489
Q gi|254780943|r 12 SVGE-RLFKAL-KRLEYRGYDSSGM 34 (608)
Q Consensus 12 ~~~~-~l~~~L-~~Le~RG~Ds~Gi 34 (608)
++.+ .|..|| +-|.-|||+=|=.
T Consensus 9 ~AGKs~l~AaLCRiL~rrGy~VAPF 33 (502)
T TIGR00313 9 SAGKSLLTAALCRILARRGYRVAPF 33 (502)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4028999999999985278812785
No 236
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=41.56 E-value=13 Score=16.39 Aligned_cols=92 Identities=21% Similarity=0.424 Sum_probs=49.0
Q ss_pred ECCCCEEEEEECCCCEECCCCCCCCC--CHHHHHCCCCCHHCCCHHHHH---HHHHHHHCHHHHHHHHHCCCCCCCCC-C
Q ss_conf 82765188973057410033322210--001100012100001407899---99997417899999871574766452-1
Q gi|254780943|r 205 YMEDGDWAIIRNSGLTIYDSQGYEIE--RPIQIVQIAPFLIGKGNYRHF---MEKEIYEQPEAISRVLSHYINLSDHT-I 278 (608)
Q Consensus 205 ~L~dgei~~i~~~~~~i~~~~~~~~~--~~~~~i~~~~~~~~kg~y~hf---m~kEI~EQP~~l~~~i~~~~~~~~~~-~ 278 (608)
.+.+.|=..+.++|++..=-+..++. |-+. =+-|..--| .||.|- ++|||||. .+=+++. ..... +
T Consensus 533 ~~p~KD~~~L~eGGiTLSGGQRARIsLARAvY-KDADLYLLD-SPF~~LDv~TEKeIFE~--ClCKL~~----~KTRIlV 604 (1534)
T TIGR01271 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVY-KDADLYLLD-SPFTHLDVVTEKEIFES--CLCKLLS----NKTRILV 604 (1534)
T ss_pred HCCCCCCEEECCCCEECCCCHHHHHHHHHHHH-HHHHHHHHC-CCCCHHCCCCCHHHHHH--HHHHHHC----CCCEEEE
T ss_conf 35444760214777642474057888888775-420023213-78311012213567888--8998841----7851888
Q ss_pred CCCCHHCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 1110000235655103520365430799
Q gi|254780943|r 279 IPNIFNYDFANISGLLVSSCGTSYLAGL 306 (608)
Q Consensus 279 ~~~~~~~~~~~~~~I~~vGcGTSy~Aal 306 (608)
...+ ..+++.|+|++..-|.+|+=|.
T Consensus 605 TSKl--EHLKkADKILlLH~G~cYFYG~ 630 (1534)
T TIGR01271 605 TSKL--EHLKKADKILLLHEGVCYFYGT 630 (1534)
T ss_pred ECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 4223--5413115166554570124247
No 237
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=41.01 E-value=22 Score=14.73 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5057752678818999999998630244246511
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVN 372 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN 372 (608)
-++++-+.||+|+=.-..+.+++++|.+.+.+.+
T Consensus 3 v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~~~ 36 (122)
T pfam03205 3 VLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKH 36 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999489998999999999999987994489998
No 238
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=40.98 E-value=22 Score=14.73 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 5775267881899999999863024424651178
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
+++-|-||.|+=.-..+...+++|.++-.|=...
T Consensus 7 ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~ 40 (170)
T PRK10751 7 IAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40 (170)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9946999999999999999998798499994577
No 239
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328 These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=40.90 E-value=11 Score=16.73 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99999999827980899956532
Q gi|254780943|r 528 TLSNIQEIVTRGGRVIFITDEEG 550 (608)
Q Consensus 528 ~~s~~~Ei~arg~~vi~I~~~~~ 550 (608)
....+++++.||-+++++||...
T Consensus 104 ~~~gL~~L~~~G~~l~iLSNg~~ 126 (207)
T TIGR01428 104 VPAGLRALKERGLRLAILSNGSP 126 (207)
T ss_pred CHHHHHHHHHCCCEEEEECCCCH
T ss_conf 18899999764323652148986
No 240
>PRK05339 hypothetical protein; Provisional
Probab=40.85 E-value=22 Score=14.71 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 555057752678818999999998630244246511787631
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTI 378 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~l 378 (608)
.+-+.++||+||+|+- ++-.|. +|.++.=+-=+|+.++
T Consensus 149 ADiiLvGVSRtsKTPt---S~YLA~-~G~KvAN~PLvpe~~l 186 (273)
T PRK05339 149 ADVILVGVSRTSKTPT---SLYLAN-KGIKAANYPLVPEVPL 186 (273)
T ss_pred CCEEEEECCCCCCCCH---HHHHHH-CCCCEEEECCCCCCCC
T ss_conf 8899982255789837---899985-5852241077799999
No 241
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=40.61 E-value=22 Score=14.69 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred CCEEEEECCEECC--HHHHHHHHHHCCC-EEEEC------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8899997681506--8999899997898-89724------------7615678887634320010267799999988751
Q gi|254780943|r 91 EGIAVTHNGIIEN--FSRLKKEHFSSQQ-VFLTE------------TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 91 ~~~~vvHNG~I~N--~~elr~~l~~~g~-~f~s~------------tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
.-+.++||-++.. |.|+|.++-.+-. -|.|- ||+- |+ -..++..-+.+++-+
T Consensus 60 PtLVlahNKTLAAQLy~Efk~fFP~NaVEYFVSYyDYYQPEAYip~tDtY-----IE--------KdssIN~eId~lR~s 126 (657)
T PRK05298 60 PTLVLAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTY-----IE--------KDSSINEEIERLRLS 126 (657)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCE-----EE--------CCCHHHHHHHHHHHH
T ss_conf 75997665889999999999768887179985144566971114788852-----42--------363466999999999
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 222010046872389997
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVAR 173 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar 173 (608)
-.-.++.++ |.|++|.
T Consensus 127 AT~SLl~Rr--DVIVVAS 142 (657)
T PRK05298 127 ATKSLLERR--DVIVVAS 142 (657)
T ss_pred HHHHHHCCC--CEEEEEE
T ss_conf 999885479--8699973
No 242
>PRK06769 hypothetical protein; Validated
Probab=40.40 E-value=14 Score=16.08 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8999999998630244246511787
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
..+.+|++..+++|..++.|||-++
T Consensus 31 ~~~~~ai~~L~~~g~~i~vvTNQsg 55 (175)
T PRK06769 31 PFTKASLQKLKAKNIKIFSFTNQPG 55 (175)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 8889999999986995999968821
No 243
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.33 E-value=12 Score=16.46 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8899999999827980899956
Q gi|254780943|r 526 QKTLSNIQEIVTRGGRVIFITD 547 (608)
Q Consensus 526 ~k~~s~~~Ei~arg~~vi~I~~ 547 (608)
+.+...+++++..|-.++++|.
T Consensus 182 ~~i~~ll~~l~~~G~Tii~vtH 203 (286)
T PRK13641 182 KEMMQIFKDYQKAGHTVILVTH 203 (286)
T ss_pred HHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999963999999915
No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=40.13 E-value=23 Score=14.64 Aligned_cols=28 Identities=21% Similarity=0.603 Sum_probs=23.4
Q ss_pred CEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 1366137620111110379827651889
Q gi|254780943|r 186 EMFVGSDVTALTLLTDKVTYMEDGDWAI 213 (608)
Q Consensus 186 ~~~vaSd~~al~~~t~~~~~L~dgei~~ 213 (608)
-.+++-|..-+..++++++.|+||+++.
T Consensus 187 il~itH~l~~v~~~~Drv~vm~~G~iv~ 214 (491)
T PRK10982 187 IVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred EEEECCCHHHHHHCCCEEEECCCCEEEE
T ss_conf 6786243674421586789756974985
No 245
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=39.38 E-value=23 Score=14.56 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 5505775267881899999999863024424651178763100024
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESD 383 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD 383 (608)
..++|..-|.=-..|+.++++.+++.+.++++++.++..-....|+
T Consensus 27 ~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENMs~~~c~~c~ 72 (81)
T pfam10609 27 GAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENMSYFVCPDCG 72 (81)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 7699809859999999999999998499618999779753689999
No 246
>PRK12483 threonine dehydratase; Reviewed
Probab=39.32 E-value=23 Score=14.55 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=22.7
Q ss_pred CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 2010012334455505775267881899999999863024424651178
Q gi|254780943|r 326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
.||.|+-..-..--++++++-++...+.-..++..++.|..++-+|+++
T Consensus 372 tEF~YR~~~~~~A~ifvgi~~~~~~~~~~~~~~~l~~~g~~~~Dls~ne 420 (521)
T PRK12483 372 TEFNYRYHDAREAHLFVGVQTHPRHDSRAQLLASLRAQGFPVLDLTDNE 420 (521)
T ss_pred EEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf 5777314588847999987627815699999999997799547466577
No 247
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=38.89 E-value=23 Score=14.65 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=21.4
Q ss_pred EEEECCCCCCCCCCCEEEECCCCEEEEEECC
Q ss_conf 3661376201111103798276518897305
Q gi|254780943|r 187 MFVGSDVTALTLLTDKVTYMEDGDWAIIRNS 217 (608)
Q Consensus 187 ~~vaSd~~al~~~t~~~~~L~dgei~~i~~~ 217 (608)
.+++-| .-+..++++++.|+||+|+.=++.
T Consensus 198 i~vtHd-~~~a~~a~Rii~~~dG~iv~d~~~ 227 (648)
T PRK10535 198 IIVTHD-PQVAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred EEECCC-HHHHHHCCEEEEEECCEEECCCCC
T ss_conf 997648-699964997999958989737996
No 248
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=38.57 E-value=24 Score=14.48 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=25.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 52678818999999998630244246511787631000241013674
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a 390 (608)
.||+|.+..+.++|+--++.. ..|++...+ |.-++.||++||=..
T Consensus 502 ~~~~~~~~~~~e~LkD~~klp-liV~~D~~~-~ETa~yADyILPDtt 546 (735)
T cd02758 502 YGAPGLVKQVEEKLKDPKKLP-LFIAIDAFI-NETSAYADYIVPDTT 546 (735)
T ss_pred HCCCCCHHHHHHHHCCHHHCC-EEEEEECCC-CHHHHHCCEEECCCC
T ss_conf 608886799999845840289-699985786-766773868615635
No 249
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.20 E-value=24 Score=14.44 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=22.6
Q ss_pred CCEEEEECCEECCHHH---HHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 8899997681506899---98999978988972476156788876
Q gi|254780943|r 91 EGIAVTHNGIIENFSR---LKKEHFSSQQVFLTETDTEVIACLLE 132 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~e---lr~~l~~~g~~f~s~tDsEvi~~li~ 132 (608)
-+++|+=-|+=.+..+ +-....++|....| |-|..+..+.
T Consensus 70 ~d~vV~SPGI~p~~p~~~~~l~~A~~~gi~i~~--eiel~~~~~~ 112 (501)
T PRK02006 70 VELVALSPGLSPLEPALAALLAAARERGIPVWG--ELELFAQALA 112 (501)
T ss_pred CCEEEECCEECCCCCCHHHHHHHHHHCCCCEEE--HHHHHHHHHH
T ss_conf 999998990088885431999999987995876--8999998876
No 250
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=37.79 E-value=25 Score=14.40 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=29.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 0365430799999999862566731430420100123344555057752678818999999998630244246511787
Q gi|254780943|r 297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 297 GcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
|.|||.-.-+..+..+++ .+++++++..+ +.-. ..+.-+++ +.|+ | -.+.....+.++++|.|-.+
T Consensus 9 GlGSS~mlkm~i~~vl~~-lgi~~~v~h~d-i~~a--~~~~~Dii-it~~-----~---la~~~~~~~~~vi~l~n~~d 74 (86)
T cd05563 9 GLGSSLMLKMNVEKVLKE-LGIEAEVEHTD-LGSA--KASSADII-VTSK-----D---LASLLADGGAKVIGLKNIMD 74 (86)
T ss_pred CCCHHHHHHHHHHHHHHH-CCCCCEEEEEE-HHHC--CCCCCCEE-EECH-----H---HHHHHHCCCCEEEEEECCCC
T ss_conf 943899999999999998-69982799802-6446--87889999-9878-----9---98663117982999835789
No 251
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=37.58 E-value=25 Score=14.37 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5103520365430799999999862566731430
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDV 324 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~ 324 (608)
..|.++|.|+| +|.++|++.+ .++.+.++.
T Consensus 26 ~DVvIVGaGps---GLtAAy~LAk-~g~Kv~i~E 55 (257)
T PRK04176 26 VDVAIVGAGPS---GLTAAYYLAK-AGLKVAVFE 55 (257)
T ss_pred CCEEEECCCCH---HHHHHHHHHH-CCCEEEEEE
T ss_conf 68899888827---9999999986-896599997
No 252
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.50 E-value=19 Score=15.13 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999982798089995
Q gi|254780943|r 528 TLSNIQEIVTRGGRVIFIT 546 (608)
Q Consensus 528 ~~s~~~Ei~arg~~vi~I~ 546 (608)
+...+++++..|-.++++|
T Consensus 184 i~~ll~~l~~~G~Tii~vT 202 (280)
T PRK13649 184 LMTIFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHHCCCEEEEEC
T ss_conf 9999999986399999987
No 253
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=37.31 E-value=14 Score=16.04 Aligned_cols=60 Identities=8% Similarity=0.124 Sum_probs=36.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH----HHHHCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45550577526788189999999----9863024424651-1787631000241013674200110
Q gi|254780943|r 336 SSKWASLFISQSGETADTLASLR----YMRTQGLTIGSLV-NVLESTIARESDFIFPIKAGPEIGV 396 (608)
Q Consensus 336 ~~~tlvI~iSQSGeT~dti~Al~----~ak~~g~~tiaIt-N~~~S~la~~aD~~i~~~aG~Ei~V 396 (608)
+++-++|+-|.==.|.-+|-||. ..|+++++++++. =+-++++.-.|+..+. -+|.|.+.
T Consensus 234 ~~~~vligPSNPvtSIGpILal~Gire~Lrda~~kVVavSPIvG~~~vsGpA~Klm~-A~G~dvsa 298 (359)
T TIGR01819 234 DADVVLIGPSNPVTSIGPILALPGIREALRDATVKVVAVSPIVGDKPVSGPAGKLMA-AVGVDVSA 298 (359)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCC-CCCCCCCH
T ss_conf 599899778668111322327256899998369738997164068887584342042-23436344
No 254
>PRK11587 putative phosphatase; Provisional
Probab=37.11 E-value=23 Score=14.60 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=15.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999998630244246511787631000241013
Q gi|254780943|r 353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 353 ti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
+...++.|+..|.++++|+...++.=-..+|.++.
T Consensus 164 S~~gi~AA~~AG~~~v~V~~~~~~~~~~~Ad~vi~ 198 (218)
T PRK11587 164 APAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVLH 198 (218)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEEC
T ss_conf 78889999986998999879997457624999989
No 255
>pfam01924 HypD Hydrogenase formation hypA family. HypD is involved in hydrogenase formation. It contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into hypD resulted in R. leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas.
Probab=36.82 E-value=8.3 Score=17.71 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCEEEEECCCCC-CCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999986302442465117876-310002--41013674200110007888999999999999977621200157763227
Q gi|254780943|r 356 SLRYMRTQGLTIGSLVNVLES-TIARES--DFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELI 432 (608)
Q Consensus 356 Al~~ak~~g~~tiaItN~~~S-~la~~a--D~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~ 432 (608)
.|..+|.+|+.+-.+-.-.++ .+|+.- ..++....|-|--.++| ++..+-| ..++.-+ =.++
T Consensus 95 SL~~ara~GadVriVYSpldAl~iA~~nP~k~vVF~avGFETTaP~~-------A~~i~~a----~~~~~~N----f~vl 159 (355)
T pfam01924 95 SLLDARAEGADVRIVYSPLDALKIARENPDKEVVFFAIGFETTAPAT-------AAAILQA----KAEGLKN----FSVL 159 (355)
T ss_pred CHHHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHH----HHCCCCC----EEEE
T ss_conf 99999858997899958899999999789985999943655565799-------9999999----9809995----8997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCHHHCCCCCHHHH-
Q ss_conf 999875999999999767744677987420361455213664499999999999974221--14423243144637880-
Q gi|254780943|r 433 RSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLH--AEGYAAGELKHGPIALI- 509 (608)
Q Consensus 433 ~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syih--aeg~~agE~kHGP~ali- 509 (608)
...+.+|..++.++++-+..++.+ +..-.-..++|......++.|= .++ --||+..++..|-..++
T Consensus 160 ~~hkl~pPa~~~ll~~~~~~idgf---i~PGHVstI~G~~~y~~l~~~y--------~~P~VVaGFEp~DiL~~i~~lv~ 228 (355)
T pfam01924 160 SNHVLVPPAMEALLEDPEVRIDGF---IGPGHVSTIIGTEPYEFLAEEY--------GVPVVVAGFEPLDILQAILMLVR 228 (355)
T ss_pred EECCCCHHHHHHHHHCCCCCCCEE---EECCEEEEEECHHHHHHHHHHC--------CCCEEECCCCHHHHHHHHHHHHH
T ss_conf 702414899999981999875458---7368667884513669999982--------99866437896999999999999
Q ss_pred --CCCCEEEE
Q ss_conf --79871899
Q gi|254780943|r 510 --TEGTFVIA 517 (608)
Q Consensus 510 --~~~~~vi~ 517 (608)
.++.+-+.
T Consensus 229 q~~~g~~~v~ 238 (355)
T pfam01924 229 QLNEGRAEVE 238 (355)
T ss_pred HHHCCCCEEE
T ss_conf 9977985399
No 256
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=36.66 E-value=26 Score=14.28 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 51035203654307999999998625667314304
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVS 325 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~a 325 (608)
..+.++|.|.| +|.++|++-+ .+..+.++..
T Consensus 18 ~DV~IVGaGps---GL~aA~~LAk-~g~KV~i~E~ 48 (229)
T pfam01946 18 SDVVIVGAGPS---GLTAAYYLAK-KGLKVAIIER 48 (229)
T ss_pred CCEEEECCCCH---HHHHHHHHHH-CCCEEEEEEC
T ss_conf 68899887817---9999999987-8985999964
No 257
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075 In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=36.51 E-value=26 Score=14.26 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHHHHHHCCCCCEEE-ECCHHHCCCCC-CCC------CCEEEE---EC-----CCC---CC---HHHHHHHHHHHHCCCC
Q ss_conf 999986256673143-04201001233-445------550577---52-----678---81---8999999998630244
Q gi|254780943|r 309 KFWFERLARLKVEID-VSSEFRYRDFV-YSS------KWASLF---IS-----QSG---ET---ADTLASLRYMRTQGLT 366 (608)
Q Consensus 309 ~~~~e~~~~i~v~v~-~asEf~y~~~~-~~~------~tlvI~---iS-----QSG---eT---~dti~Al~~ak~~g~~ 366 (608)
-+.+++++|.++... +- . .|.+.. +.+ -++||. .| ++| .. +.+++.++..-++|.+
T Consensus 18 ~~A~~k~~Gv~~~~Vhik-q-w~~D~~r~~~~rsvfD~D~VvlPGGFSyGDYLRaGAIAa~rvk~p~~~~V~~~A~~G~p 95 (264)
T TIGR01737 18 VYALEKLLGVDAEIVHIK-Q-WYEDKSRLSDQRSVFDYDAVVLPGGFSYGDYLRAGAIAALRVKSPIMQEVREFAEKGKP 95 (264)
T ss_pred HHHHHHHCCCCEEEEEEE-E-CHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCE
T ss_conf 999997149983799865-2-10000478766417873348866877723577799999875030889999999955982
Q ss_pred EEEEECCC
Q ss_conf 24651178
Q gi|254780943|r 367 IGSLVNVL 374 (608)
Q Consensus 367 tiaItN~~ 374 (608)
+|||||--
T Consensus 96 VLGiCNGF 103 (264)
T TIGR01737 96 VLGICNGF 103 (264)
T ss_pred EEEEECHH
T ss_conf 89976647
No 258
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=36.26 E-value=20 Score=15.03 Aligned_cols=92 Identities=22% Similarity=0.356 Sum_probs=48.0
Q ss_pred EECCCCCCCCCCCCCCCEEECCEEE--EECCEECCHHHHHHHHHHCCCEEEEC-CCHHHHHHHHHHHHH---HCCH---H
Q ss_conf 1045438899700267502388999--97681506899989999789889724-761567888763432---0010---2
Q gi|254780943|r 71 HTRWATHGLPNKENSHPHCIEGIAV--THNGIIENFSRLKKEHFSSQQVFLTE-TDTEVIACLLEKFIK---NGSS---K 141 (608)
Q Consensus 71 HtR~AT~G~~~~~NahP~~~~~~~v--vHNG~I~N~~elr~~l~~~g~~f~s~-tDsEvi~~li~~~~~---~~~~---~ 141 (608)
-+||-.+|........+ ..+.+.+ =||-.+.--.-.+. ..+-+.+.|. -|.|+++.++..+=- .|.+ -
T Consensus 7 T~r~~~~~~~~~~~~~~-~~~p~I~a~WH~~ll~~~~~~~~--~~~~~~lvS~s~DGeiia~~~~~~G~~~IRGSs~rgg 83 (189)
T cd07983 7 TLRWRVIGDESADALIA-QGEPVILAFWHGRLLLMPYLFRR--RKRIAALISRSKDGEIIARVLERLGIRVVRGSSSRGG 83 (189)
T ss_pred EEEEEEECCHHHHHHHH-CCCCEEEEEECHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 64899999327888754-69989999977887767987246--7874999800535338999999819815644555581
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6779999998875122201004687
Q gi|254780943|r 142 KETMQKLMQCLTGSYSIAVIFEDDP 166 (608)
Q Consensus 142 ~~ai~~~~~~l~G~ya~~il~~~~p 166 (608)
..|++.+++.++..+++++. -|.|
T Consensus 84 ~~al~~~~~~lk~g~~i~it-pDGP 107 (189)
T cd07983 84 AAALREMLRALKDGYNIAIT-PDGP 107 (189)
T ss_pred HHHHHHHHHHHHCCCEEEEE-CCCC
T ss_conf 99999999999779859994-6899
No 259
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699 Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.
Probab=36.05 E-value=25 Score=14.31 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCC--CCCCCCCC
Q ss_conf 577526788189999999986302442465-117876--31000241
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSL-VNVLES--TIARESDF 384 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaI-tN~~~S--~la~~aD~ 384 (608)
++-||| +|.+++...|+.|-++++| |...-| ++|+++|.
T Consensus 247 ~~~vp~-----~~~~~~~k~~~~G~Ri~aVGTTsvRslE~~a~~~~~ 288 (364)
T TIGR00113 247 YLEVPQ-----ETVEALEKTRESGGRIIAVGTTSVRSLESAAQEADE 288 (364)
T ss_pred HEECCH-----HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 012687-----899999999970983999876147779888763047
No 260
>pfam00265 TK Thymidine kinase.
Probab=35.94 E-value=26 Score=14.20 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=40.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50577526788189999999986302442465117876310002410136742001
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
++.++---||.|++.++.++..+.+|-+++.++-..+ .|..+..+-.+.|-+.
T Consensus 4 ~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D---~R~~~~~i~Sh~g~~~ 56 (175)
T pfam00265 4 ELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAID---NRYGTGKVVTHDGISM 56 (175)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCEEECCCCCCC
T ss_conf 9999251778999999999999987993999946112---7789996988999811
No 261
>PRK09224 threonine dehydratase; Reviewed
Probab=35.80 E-value=27 Score=14.19 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=24.0
Q ss_pred CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 2010012334455505775267881899999999863024424651178
Q gi|254780943|r 326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
.||.|+-..-..-..+++|+-++...|.-..++..++.|..++-+|++.
T Consensus 355 tEF~YR~~~~~~A~ifvgi~~~~~~~e~~~~~~~l~~~g~~~~Dls~nE 403 (504)
T PRK09224 355 TEFNYRYADAKNAHIFVGVQLSRGREERAEIIAQLREHGYPVVDLSDDE 403 (504)
T ss_pred EEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf 5777213689843899999845877899999999997799547446438
No 262
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.71 E-value=21 Score=14.82 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=8.5
Q ss_pred HHHHHHHHHHC-CCCC-CCCCCC
Q ss_conf 99999999838-7798-897986
Q gi|254780943|r 582 MIAYCTAVLIG-TDVD-QPRNLA 602 (608)
Q Consensus 582 llAy~~A~~~G-~dpD-~PRnLa 602 (608)
-|++.+. .+| +..+ .|+...
T Consensus 250 ~l~~~L~-~~g~~~~~~~p~t~~ 271 (288)
T PRK13643 250 HFADQLQ-KTGAVTFEKLPITRA 271 (288)
T ss_pred HHHHHHH-HCCCCCCCCCCCCHH
T ss_conf 9999999-769988677989899
No 263
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=35.53 E-value=25 Score=14.41 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 4688999999998279808999565
Q gi|254780943|r 524 FFQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 524 ~~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
....+...+++++..|..++++|.+
T Consensus 169 ~~~~i~~~l~~l~~~g~tii~itHd 193 (211)
T cd03225 169 GRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999999999789999999259
No 264
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.42 E-value=27 Score=14.14 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 6899989999789889724761567
Q gi|254780943|r 103 NFSRLKKEHFSSQQVFLTETDTEVI 127 (608)
Q Consensus 103 N~~elr~~l~~~g~~f~s~tDsEvi 127 (608)
+..+|.+.|.+.|+.+.-.||-|+.
T Consensus 53 e~~~l~~~l~~~gy~~~d~t~n~~~ 77 (81)
T cd04907 53 DLDELKERLDALGYPYQEETDNPAY 77 (81)
T ss_pred HHHHHHHHHHHCCCCCEECCCCHHH
T ss_conf 8999999999869983887699999
No 265
>PRK07208 hypothetical protein; Provisional
Probab=35.34 E-value=27 Score=14.14 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=6.1
Q ss_pred CCCEEEEECC
Q ss_conf 3614552136
Q gi|254780943|r 463 CQTLLYVGRG 472 (608)
Q Consensus 463 ~~~~~~lG~G 472 (608)
...+++.||-
T Consensus 420 ~~~I~~~GR~ 429 (474)
T PRK07208 420 FPNLHLVGRN 429 (474)
T ss_pred CCCEEEECCC
T ss_conf 7998990658
No 266
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=34.41 E-value=28 Score=14.04 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHCCCCCEEEEEEEEC-----CEEEEEEC
Q ss_conf 9976315874348999958-----92999945
Q gi|254780943|r 21 LKRLEYRGYDSSGMATICD-----GKIQCVRA 47 (608)
Q Consensus 21 L~~Le~RG~Ds~Gia~~~~-----~~i~~~K~ 47 (608)
-.+|+-||+ .+.+.++.. |.+..++.
T Consensus 16 Ay~L~k~~p-~~~i~lfE~~~r~GG~l~T~~~ 46 (444)
T COG1232 16 AYRLQKAGP-DVEVTLFEADDRVGGLLRTVKI 46 (444)
T ss_pred HHHHHHHCC-CCCEEEEECCCCCCCEEEEEEE
T ss_conf 999998589-9867998348877865899831
No 267
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=34.19 E-value=15 Score=15.94 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 267881899999999863024424651178763100024101
Q gi|254780943|r 345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
--.|-.-+|..=.+..|..|+.+++.|+.|+-.|||++....
T Consensus 160 ~~eGPrFeT~AE~r~~r~~GaDvVGMT~~PEa~LARE~gi~Y 201 (289)
T PRK08931 160 CMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICY 201 (289)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf 965798786999999998098933677447999998728853
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=34.06 E-value=28 Score=14.00 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=22.7
Q ss_pred CEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 1366137620111110379827651889
Q gi|254780943|r 186 EMFVGSDVTALTLLTDKVTYMEDGDWAI 213 (608)
Q Consensus 186 ~~~vaSd~~al~~~t~~~~~L~dgei~~ 213 (608)
-.+++-+..-+..++++++.|+||.++.
T Consensus 196 il~isH~l~~v~~~aDrv~vl~~G~iv~ 223 (513)
T PRK13549 196 CIYISHKLNEVKAISDTICVIRDGRHIG 223 (513)
T ss_pred EEEEECCHHHHHCCCCEEEECCCCCEEE
T ss_conf 9999457143030098740448985885
No 269
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=34.05 E-value=28 Score=14.00 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=31.9
Q ss_pred CEEEEECCCCCCH----H--HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 1035203654307----9--999999986256673143042010012334455505775267881899999999863024
Q gi|254780943|r 292 GLLVSSCGTSYLA----G--LVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 292 ~I~~vGcGTSy~A----a--l~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
.|+++|.||+++. . ..++.+.+++-..++ ..+ |.. - -..++-++++...+.|+
T Consensus 1 giL~v~hGs~~~dpy~~~ie~~a~~i~~~~~~~~v--~~~--f~e---------------~--~~P~i~eai~~l~~~G~ 59 (101)
T cd03409 1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPY--YVG--FQS---------------G--LGPDTEEAIRELAEEGY 59 (101)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE--EHH--HHH---------------H--CCCCHHHHHHHHHHCCC
T ss_conf 96999669997666089999999999988799824--143--797---------------7--19999999999997698
Q ss_pred CEEEEE
Q ss_conf 424651
Q gi|254780943|r 366 TIGSLV 371 (608)
Q Consensus 366 ~tiaIt 371 (608)
+.+.++
T Consensus 60 ~~ivvv 65 (101)
T cd03409 60 QRVVIV 65 (101)
T ss_pred CEEEEE
T ss_conf 679998
No 270
>PRK06242 flavodoxin; Provisional
Probab=33.97 E-value=28 Score=13.99 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=21.8
Q ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 550577526-788189999999986302442465117
Q gi|254780943|r 338 KWASLFISQ-SGETADTLASLRYMRTQGLTIGSLVNV 373 (608)
Q Consensus 338 ~tlvI~iSQ-SGeT~dti~Al~~ak~~g~~tiaItN~ 373 (608)
++++|.-|+ .|.|.-+-+|+.. +.++..+.+...
T Consensus 2 K~~IvY~S~~tGNT~KvA~aiae--~l~~~~~~~~~~ 36 (150)
T PRK06242 2 KALIVYVSIHHGNTEKIAKAMAE--VLNADVIKPTDI 36 (150)
T ss_pred CEEEEEEECCCCCHHHHHHHHHH--HCCCCEEEECCC
T ss_conf 68999995688979999999997--659739974458
No 271
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=33.93 E-value=28 Score=13.99 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=6.4
Q ss_pred HHHHHCCCCC
Q ss_conf 9976315874
Q gi|254780943|r 21 LKRLEYRGYD 30 (608)
Q Consensus 21 L~~Le~RG~D 30 (608)
-..|+.+|++
T Consensus 14 A~~L~~~G~~ 23 (430)
T TIGR03467 14 AVELARAGVR 23 (430)
T ss_pred HHHHHHCCCC
T ss_conf 9999878998
No 272
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.85 E-value=28 Score=13.98 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=7.2
Q ss_pred CEEEEECCCCCCH
Q ss_conf 5057752678818
Q gi|254780943|r 339 WASLFISQSGETA 351 (608)
Q Consensus 339 tlvI~iSQSGeT~ 351 (608)
..+|+-|=||+|+
T Consensus 34 ~aiiG~NGsGKST 46 (273)
T PRK13647 34 TAILGPNGAGKST 46 (273)
T ss_pred EEEECCCCCHHHH
T ss_conf 9999999975999
No 273
>CHL00199 infC translation initiation factor 3; Provisional
Probab=33.67 E-value=29 Score=13.96 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.3
Q ss_pred EEEEECCCCC---CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 0577526788---18999999998630244246511787631000241013
Q gi|254780943|r 340 ASLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 340 lvI~iSQSGe---T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
-|-.|+-.|+ ...+-+|++.|++.|.-.+-|..+.+-|+++.-|+.=+
T Consensus 26 ~VrlI~~~G~~lGv~~~~eAl~~A~~~gLDLVevsp~a~PPVcKimDygK~ 76 (182)
T CHL00199 26 QVRVIDDSGSQLGIFTSEQALQLAKKQGLDLVLVSEKSDPPVCRIIDYGKY 76 (182)
T ss_pred EEEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEHHHH
T ss_conf 899998999386607199999999984998899889999987898655668
No 274
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=33.64 E-value=29 Score=13.95 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8999999998630244246511787
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
..+++|++..+++|..++.|||-++
T Consensus 32 ~g~~~al~~l~~~g~~~~ivTNQsG 56 (181)
T PRK08942 32 PGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 7889999999987996999958713
No 275
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=33.42 E-value=29 Score=13.93 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=54.2
Q ss_pred HHHHHHHCCC-CCEEEECCHHHCCCC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 9999862566-731430420100123---344555057752678818999999998630244246511787631000241
Q gi|254780943|r 309 KFWFERLARL-KVEIDVSSEFRYRDF---VYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDF 384 (608)
Q Consensus 309 ~~~~e~~~~i-~v~v~~asEf~y~~~---~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~ 384 (608)
.-|+...... ......|.-|+|.-. .-.++..|.. -||-..+++|...+.++|.--.-+..+++---++....
T Consensus 359 ~~~l~~~~~~~~~~~~tP~~F~~~L~~~Ar~~~krIVlp---Eg~d~rvl~Aa~~~~~~gia~~iLlG~~~~i~~~~~~~ 435 (702)
T PRK05632 359 TDWLESRLATPRSRRLSPPAFRYQLTERARAAKKRIVLP---EGDEPRTLKAAAICAERGIADCVLLGNPEEIRRVAAAQ 435 (702)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC---CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC
T ss_conf 999999865778888590999999999997479879967---98986999999999986980599978999999999975
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0136742001100
Q gi|254780943|r 385 IFPIKAGPEIGVA 397 (608)
Q Consensus 385 ~i~~~aG~Ei~Va 397 (608)
.+.+..|-|+==+
T Consensus 436 gl~l~~~~~iidp 448 (702)
T PRK05632 436 GVDLPDGLEIIDP 448 (702)
T ss_pred CCCCCCCCEEECC
T ss_conf 9997579889897
No 276
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.41 E-value=21 Score=14.96 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 889999999982798-08999565
Q gi|254780943|r 526 QKTLSNIQEIVTRGG-RVIFITDE 548 (608)
Q Consensus 526 ~k~~s~~~Ei~arg~-~vi~I~~~ 548 (608)
..+...++++...++ .++.||.+
T Consensus 177 ~~i~~ll~~L~~~~~~Tii~iTHd 200 (277)
T PRK13642 177 SEIMRVIHEIKDKYHLTVLSITHD 200 (277)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999999998169899999458
No 277
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=33.30 E-value=29 Score=13.92 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCEEEEE-----CCCCCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 5505775-----26788189999999986302---44246511787631000241013674
Q gi|254780943|r 338 KWASLFI-----SQSGETADTLASLRYMRTQG---LTIGSLVNVLESTIARESDFIFPIKA 390 (608)
Q Consensus 338 ~tlvI~i-----SQSGeT~dti~Al~~ak~~g---~~tiaItN~~~S~la~~aD~~i~~~a 390 (608)
++|++.. .+|+.|.++.++++.-++.| .+.+..+..--|..++.||++||-..
T Consensus 423 k~L~~~~aN~~w~s~~n~~~v~~~L~d~d~~g~~KipfIVv~D~f~SETa~yADlILPdTT 483 (679)
T cd02763 423 DTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAFADLVLPDTT 483 (679)
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCEEECCCC
T ss_conf 1444631353213688828899874411334243577699982666705652738704775
No 278
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=33.19 E-value=29 Score=13.91 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEC
Q ss_conf 6889999999982798089995653210001346627986
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVL 564 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~i 564 (608)
...+...+.++..+|..+++++..+....... .+.++.+
T Consensus 179 ~~~i~~~l~~l~~~~~~vi~~~H~~~~~~~~~-~Drv~vl 217 (226)
T cd03234 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRL-FDRILLL 217 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH-CCEEEEE
T ss_conf 99999999999978999999988898999997-9999999
No 279
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=32.94 E-value=29 Score=13.88 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----H-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 000241013674200110007888999999-----9-99999977621200157763227999875999
Q gi|254780943|r 379 ARESDFIFPIKAGPEIGVASTKAFTCQLLV-----L-VIMAIYAGKVRGYINEEQERELIRSLVEIPRK 441 (608)
Q Consensus 379 a~~aD~~i~~~aG~Ei~VasTKsftaql~~-----l-~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~ 441 (608)
+|.-|..+-++|-+|-.-||| ||+-+++ + .-++..++-.+|-+-.-.-.+.++.|..+.+.
T Consensus 195 ~rald~~LILhADH~~~NaST--ftaRvvaST~sD~ysaisaaIgaL~GPLHGGAne~vl~ml~eI~~~ 261 (406)
T cd06113 195 AKLLDLCLVLHAEHGGGNNST--FTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIKVMEMLEDIKEN 261 (406)
T ss_pred HHHHHHHHHHHCCCCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999962437776016--6655553478878999999998646865458489999999999985
No 280
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=32.86 E-value=29 Score=13.87 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCCCCCEEEE--ECCCCCCH--HHHHHHHHHHHCCCCEEEE
Q ss_conf 3445550577--52678818--9999999986302442465
Q gi|254780943|r 334 VYSSKWASLF--ISQSGETA--DTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 334 ~~~~~tlvI~--iSQSGeT~--dti~Al~~ak~~g~~tiaI 370 (608)
.+.+.-+||. -|=||+|+ -.+.+|+.+++....+++-
T Consensus 27 ~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~ 67 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ 67 (220)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 77176479843788984688999887625655560478220
No 281
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=32.67 E-value=30 Score=13.85 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=37.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH--CCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 510352036543079999999986256673143042010--01233445550577526788189999999
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFR--YRDFVYSSKWASLFISQSGETADTLASLR 358 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~--y~~~~~~~~tlvI~iSQSGeT~dti~Al~ 358 (608)
--++|++++..--...+.+-. +-.+++|.+...-++. +.+..++.+.+.|+||-+|.+.-.-..++
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a--~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir 140 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAA--RERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLR 140 (210)
T ss_pred CEEEEEECCCHHHHHHHHHHH--HHHCCCEEECCCCCCCCEEECEEECCCCEEEEEECCCCCHHHHHHHH
T ss_conf 249999169989999999999--99399356048846585660105435887999977997749999999
No 282
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=32.59 E-value=30 Score=13.84 Aligned_cols=127 Identities=21% Similarity=0.197 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 01407899999974178999998715747664521111000023565510352036543079999999986256673143
Q gi|254780943|r 244 GKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEID 323 (608)
Q Consensus 244 ~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~ 323 (608)
-+|.|+|+..+|=--.-|.|++.++..+.... --+-.+|+.|..||----=+-+- .+-+...
T Consensus 488 Plg~y~~l~~~e~~~d~E~~~~~~~~li~~a~--------------~lNK~Vv~tG~~hy~~~~d~i~r----~il~~s~ 549 (1264)
T TIGR01405 488 PLGNYAHLIEKEQVKDKEALKEIIKKLIKLAK--------------ELNKPVVATGDVHYIEPEDKIYR----KILVASQ 549 (1264)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------------HCCCEEEEECCCCCCCHHHHHHH----HHHCCCC
T ss_conf 87650789861378777789999999999998--------------61977999678421786787645----3100277
Q ss_pred ECCHHHCCCCCCCC--CCEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCC--CCCCCC
Q ss_conf 04201001233445--550577526788189999999986302--44246511787631000241--013674
Q gi|254780943|r 324 VSSEFRYRDFVYSS--KWASLFISQSGETADTLASLRYMRTQG--LTIGSLVNVLESTIARESDF--IFPIKA 390 (608)
Q Consensus 324 ~asEf~y~~~~~~~--~tlvI~iSQSGeT~dti~Al~~ak~~g--~~tiaItN~~~S~la~~aD~--~i~~~a 390 (608)
--....++.....+ ++..+-=-.==+|.+.++.+-..-+.- |.-|.|+|.- .||...+. +-|+.-
T Consensus 550 G~~~~~nr~~~~k~~~~~~~~P~~~~rTT~EML~ef~fLgee~~~a~eiVveNtN--~ia~~~e~~di~Pi~~ 620 (1264)
T TIGR01405 550 GLENKLNRLANYKEDAREVYLPELHFRTTEEMLDEFSFLGEEKLLAREIVVENTN--KIADQIEEDDIQPIKD 620 (1264)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHCCCCH--HHHHHHCCCCCEECCC
T ss_conf 8886547666665435533387058616488999987404646766442003602--5775513058633378
No 283
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=32.50 E-value=22 Score=14.74 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999998387798897
Q gi|254780943|r 581 QMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 581 QllAy~~A~~~G~dpD~PR 599 (608)
--|++.+ ..+|++.+.+.
T Consensus 266 ~~l~~~L-~~~g~~~~~~~ 283 (304)
T PRK13651 266 LNFVNKL-IKKGIPISKVT 283 (304)
T ss_pred HHHHHHH-HHCCCCCCCCC
T ss_conf 9999999-97699999868
No 284
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=32.46 E-value=30 Score=13.83 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCH---HHHHHHHHHHHCC-CCEEEEECCCC
Q ss_conf 5057752678818---9999999986302-44246511787
Q gi|254780943|r 339 WASLFISQSGETA---DTLASLRYMRTQG-LTIGSLVNVLE 375 (608)
Q Consensus 339 tlvI~iSQSGeT~---dti~Al~~ak~~g-~~tiaItN~~~ 375 (608)
--++++|=+||-+ +.-+-++..|+.| .+|.-|||..-
T Consensus 80 pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 80 PDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 87799937988334648899999998607950899938976
No 285
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=32.39 E-value=30 Score=13.82 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCCE--------EEECC---HH-H--C-CCCCCCCCCEEEEECCCCC
Q ss_conf 235655103520-365430799999999862566731--------43042---01-0--0-1233445550577526788
Q gi|254780943|r 286 DFANISGLLVSS-CGTSYLAGLVGKFWFERLARLKVE--------IDVSS---EF-R--Y-RDFVYSSKWASLFISQSGE 349 (608)
Q Consensus 286 ~~~~~~~I~~vG-cGTSy~Aal~~~~~~e~~~~i~v~--------v~~as---Ef-~--y-~~~~~~~~tlvI~iSQSGe 349 (608)
...+.+.|.+++ +-=+==+|+..+-|+..|.=.++. +-+|| -| | . .+-+.-+|+=+| +=|.|.
T Consensus 163 vVNRcd~i~~~~~sam~NEe~wl~~kw~r~LGl~~~e~QA~i~H~pTVAsLApsfGRGAMTNnWvDikNsdli-~v~GgN 241 (1043)
T TIGR01553 163 VVNRCDSIAIVVASAMDNEEAWLTQKWLRALGLVAVENQARICHAPTVASLAPSFGRGAMTNNWVDIKNSDLI-LVMGGN 241 (1043)
T ss_pred EEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEE-EECCCC
T ss_conf 7864233366763253036899999999870621211036023433155431555766642551411036688-971778
Q ss_pred CHHH----HHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1899----99999986-3024424651178763100024101367420011
Q gi|254780943|r 350 TADT----LASLRYMR-TQGLTIGSLVNVLESTIARESDFIFPIKAGPEIG 395 (608)
Q Consensus 350 T~dt----i~Al~~ak-~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~ 395 (608)
=+|- ..-+=.|| ++||++|.|==.= .-=|-.||...+++.|-.|+
T Consensus 242 PAEnHP~gFkWai~Akek~GAkiI~iDPRf-nRTa~vaDl~apiRsGsDIa 291 (1043)
T TIGR01553 242 PAENHPVGFKWAIKAKEKKGAKIIVIDPRF-NRTAAVADLYAPIRSGSDIA 291 (1043)
T ss_pred CCCCCCCCCEEHHHHHCCCCCEEEEECCCC-CCCHHHCEEEEECCCCCHHH
T ss_conf 720267651002211113787799978898-71010011332168983388
No 286
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.31 E-value=30 Score=13.81 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=38.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHH
Q ss_conf 752678818999999998630244246511787631000241013674200---11000788899
Q gi|254780943|r 343 FISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTC 404 (608)
Q Consensus 343 ~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsfta 404 (608)
+-=-||+|.+.+..++..+.+|.+++..+-..++ |..-..+--++|.+ +.+.+++....
T Consensus 11 gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~---R~~~~~V~Sr~G~~~~A~~i~~~~~i~~ 72 (201)
T COG1435 11 GPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT---RYGVGKVSSRIGLSSEAVVIPSDTDIFD 72 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCEEEECCCCCCCCEECCCHHHHHH
T ss_conf 1576863599999999999759808998525335---3564336531587665356387578999
No 287
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=31.96 E-value=29 Score=13.92 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=17.6
Q ss_pred EEEECCCCCCCCCCCEEEECCCCEEEEEE
Q ss_conf 36613762011111037982765188973
Q gi|254780943|r 187 MFVGSDVTALTLLTDKVTYMEDGDWAIIR 215 (608)
Q Consensus 187 ~~vaSd~~al~~~t~~~~~L~dgei~~i~ 215 (608)
.++.-|..-...|+++++.|++|.++...
T Consensus 192 I~vtHDL~lA~~~cDrVivl~~GrIva~G 220 (409)
T PRK09536 192 VAAIHDLNLAARYCDELVLLADGRVHDAG 220 (409)
T ss_pred EEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 99956899999869999999899899871
No 288
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.84 E-value=31 Score=13.76 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHH----HHHHHHHHHHHHCCCEEE
Q ss_conf 5213664499999999999974221144232431446378807987189994480146----889999999982798089
Q gi|254780943|r 468 YVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFF----QKTLSNIQEIVTRGGRVI 543 (608)
Q Consensus 468 ~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~----~k~~s~~~Ei~arg~~vi 543 (608)
++|.|.+-+-|++-|.+.-. +|+- .....++++.+++... .......++++..|-.++
T Consensus 83 y~gG~T~tg~AL~~a~~~~~---------------~~~r---~~~~kvlvliTDG~S~~~~~~~~~~aa~~lr~~GV~if 144 (186)
T cd01480 83 YIGGGTFTDCALKYATEQLL---------------EGSH---QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIF 144 (186)
T ss_pred CCCCCCHHHHHHHHHHHHHH---------------HCCC---CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 35898629999999999986---------------1367---89853899984587666740669999999998798999
Q ss_pred EEE
Q ss_conf 995
Q gi|254780943|r 544 FIT 546 (608)
Q Consensus 544 ~I~ 546 (608)
+|+
T Consensus 145 aVG 147 (186)
T cd01480 145 FVA 147 (186)
T ss_pred EEE
T ss_conf 999
No 289
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=31.82 E-value=30 Score=13.79 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 6889999999982798089995653
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDEE 549 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~~ 549 (608)
...+...++++..+|..++++|.+-
T Consensus 172 ~~~i~~ll~~l~~~g~Tii~vTHd~ 196 (214)
T cd03292 172 TWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 9999999999985099999989898
No 290
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=31.68 E-value=31 Score=13.74 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 68899999999827980899956532100013466279868
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP 565 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP 565 (608)
.+.....+++++..|-.+++|+.+.. ... .+++++.+-
T Consensus 175 ~~~i~~~i~~l~~~G~Tvi~VsHd~~--~~~-~aDriivm~ 212 (226)
T cd03270 175 NDRLIETLKRLRDLGNTVLVVEHDED--TIR-AADHVIDIG 212 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECHH--HHH-HCCEEEEEC
T ss_conf 99999999999976998999972578--998-489999944
No 291
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.41 E-value=31 Score=13.71 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 999999999838779889
Q gi|254780943|r 581 QMIAYCTAVLIGTDVDQP 598 (608)
Q Consensus 581 QllAy~~A~~~G~dpD~P 598 (608)
--|++.+-...|.++|..
T Consensus 247 ~~l~~~L~~~~g~~~~~~ 264 (285)
T PRK13636 247 GHLMEILKEKDGFVFDEL 264 (285)
T ss_pred HHHHHHHHHHCCCCCCCC
T ss_conf 999999988309998999
No 292
>KOG2495 consensus
Probab=31.36 E-value=31 Score=13.70 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCC--CHHHHHHHHHHHHCCC
Q ss_conf 07899999974178999998715747664521111000023565510352036543--0799999999862566
Q gi|254780943|r 247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSY--LAGLVGKFWFERLARL 318 (608)
Q Consensus 247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy--~Aal~~~~~~e~~~~i 318 (608)
.|.|| +|||.++-+.-++++... ++..++++.+...++.-++++||-|-+= +||-..-|+.+.+..+
T Consensus 180 e~~~F-LKEv~dAqeIR~~~~~~l----e~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~ 248 (491)
T KOG2495 180 ENAHF-LKEVEDAQEIRRKVIDNL----EKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKI 248 (491)
T ss_pred HCHHH-HHHHHHHHHHHHHHHHHH----HHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 01046-664367999999999888----8752589985775405789998888762245677787787889986
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=30.95 E-value=32 Score=13.66 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=23.1
Q ss_pred CEEEECCCCCCCCCCCEEEECCCCEEEEEE
Q ss_conf 136613762011111037982765188973
Q gi|254780943|r 186 EMFVGSDVTALTLLTDKVTYMEDGDWAIIR 215 (608)
Q Consensus 186 ~~~vaSd~~al~~~t~~~~~L~dgei~~i~ 215 (608)
-.+++-+..-+..++++++.|++|+++...
T Consensus 222 ii~isH~l~~~~~~~Drv~vl~~G~iv~~g 251 (520)
T TIGR03269 222 MVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251 (520)
T ss_pred EEEECCCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 999748699999869999999899899993
No 294
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=30.93 E-value=32 Score=13.66 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24424651178763100024101367420011000788899999999999997762-12001577632279998759999
Q gi|254780943|r 364 GLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKV-RGYINEEQERELIRSLVEIPRKM 442 (608)
Q Consensus 364 g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~-~g~i~~~~~~~~~~~L~~lp~~i 442 (608)
+++.+.| ...-|.-+..||.-+++..|.+..+ ++.|. -.+... ......+..... .....|+..
T Consensus 233 ~~rlvvv-Dpr~S~Tga~AD~~l~irPgtd~al-----------alama-~~ii~~~~~~~~~~~~~~~--~~~~~pe~~ 297 (524)
T cd02764 233 MSRLVAA-ESVYTLTGANADVRLAIRPSQEKAF-----------ALGLA-HKLIKKGAGSSLPDFFRAL--NLAFKPAKV 297 (524)
T ss_pred CCEEEEE-CCCCCCHHHHCCEEECCCCCCHHHH-----------HHHHH-HHHHHCCCCCCCHHHHHHH--HHHCCHHHH
T ss_conf 4149997-2678856875255758689719999-----------99999-9998678864336889976--411388788
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999997677446779874203614552136
Q gi|254780943|r 443 FDVLQNIYSQIEKLCCGLAKCQTLLYVGRG 472 (608)
Q Consensus 443 ~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G 472 (608)
.+.-....++++++|+.+.....-.++..|
T Consensus 298 ~~itgv~~~~I~~lA~~la~~~~s~vv~G~ 327 (524)
T cd02764 298 AELTVDLDKALAALAKALAAAGKSLVVAGS 327 (524)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 553398699999999999846996899887
No 295
>pfam08493 AflR Aflatoxin regulatory protein. This domain is found in the aflatoxin regulatory protein (AflR) which is involved in the regulation of the biosynthesis of aflatoxin in the fungal genus Aspergillus. It occurs together with the fungal Zn(2)-Cys(6) binuclear cluster domain (pfam00172).
Probab=30.76 E-value=32 Score=13.64 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 781566589999999999999998387798897
Q gi|254780943|r 567 MGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 567 ~~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR 599 (608)
.++|+-.++..|.|-+|++|+|.+|+.-++.-|
T Consensus 215 ~D~YvlslvsLivlKVlgwY~Aaar~q~~~~~~ 247 (275)
T pfam08493 215 QDGYVLSLVSLIVLKVLGWYVAAARDQISSTVR 247 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 575026789999999999999986256786655
No 296
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=30.74 E-value=23 Score=14.67 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 688999999998279808999565
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
...+...+.+++.+|..+++++.+
T Consensus 179 ~~~i~~~l~~l~~~G~tii~vsHd 202 (236)
T cd03219 179 TEELAELIRELRERGITVLLVEHD 202 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999999999659999999174
No 297
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=30.57 E-value=32 Score=13.62 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=23.8
Q ss_pred ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEEC
Q ss_conf 036543-079999999986256673143042010---0123344555057752
Q gi|254780943|r 297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFIS 345 (608)
Q Consensus 297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iS 345 (608)
|||||- ||..+-++ .|++ +.+|.-|. |++ .++-.-|.|-++
T Consensus 56 GcGSSREhA~~aL~~-----~Gi~--aVIA~SFa~IF~rN-~iNnGLlpI~lP 100 (129)
T cd01674 56 GTGSSREQAATALLA-----KGIP--LVVSGSFGNIFSRN-SINNALLSIELP 100 (129)
T ss_pred CCCCCHHHHHHHHHH-----CCCC--EEEECHHHHHHHHH-HHHCCCCEEECH
T ss_conf 767348899999998-----4997--99985299999977-787188868764
No 298
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=30.54 E-value=22 Score=14.70 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999863024424651178763
Q gi|254780943|r 352 DTLASLRYMRTQGLTIGSLVNVLEST 377 (608)
Q Consensus 352 dti~Al~~ak~~g~~tiaItN~~~S~ 377 (608)
++...++..|..|++.+-+||-.+|-
T Consensus 92 ~v~~pir~lk~LGv~~li~tnAaGsl 117 (272)
T PRK08202 92 AVTFPVRVMKALGVETLIVTNAAGGL 117 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 83049999998499689995687566
No 299
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.52 E-value=32 Score=13.61 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 555057752678818999999998630244246511787631000241013
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
+-+++|.|--|++..-.-.-+.. +++|++++ +.|-..++....||.+|.
T Consensus 171 ~aDlllviGTSl~V~Pa~~l~~~-~~~g~~~i-~IN~~~T~~D~~adlvI~ 219 (225)
T cd01411 171 KADLLVIVGTSFVVYPFAGLIDY-RQAGANLI-AINKEPTQLDSPATLVIK 219 (225)
T ss_pred CCCEEEEECCCCEEHHHHHHHHH-HHCCCCEE-EECCCCCCCCCCCCEEEE
T ss_conf 49999997948486416679999-87899599-989999999865338982
No 300
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=30.37 E-value=32 Score=13.59 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8999999998630244246511787
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
..+.++++..++.|..++-|||-.+
T Consensus 32 p~V~~~L~~L~~~gY~iVIvTNQ~G 56 (158)
T pfam08645 32 PSVPEKLKKLHEDGYKIVIFTNQGG 56 (158)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7889999999988987999947753
No 301
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.20 E-value=32 Score=13.57 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 55505775267881899999999863024424651178763100024
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESD 383 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD 383 (608)
+||| |.--+.--|.+..+-+..+|+.|++.+-+.|+..+-.++.+.
T Consensus 36 DNTL-v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~ 81 (175)
T COG2179 36 DNTL-VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE 81 (175)
T ss_pred CCCE-ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 6751-104699899999999999986597799981897888876665
No 302
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.16 E-value=33 Score=13.57 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=6.8
Q ss_pred EEEEECCCCCCH
Q ss_conf 035203654307
Q gi|254780943|r 293 LLVSSCGTSYLA 304 (608)
Q Consensus 293 I~~vGcGTSy~A 304 (608)
.++-++|-.-|+
T Consensus 275 ~i~~~mG~tqh~ 286 (649)
T cd02752 275 TILYAMGWTQHT 286 (649)
T ss_pred EEEECCCHHHHH
T ss_conf 899736331320
No 303
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=30.09 E-value=33 Score=13.56 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 613661376201111103798276518897
Q gi|254780943|r 185 GEMFVGSDVTALTLLTDKVTYMEDGDWAII 214 (608)
Q Consensus 185 ~~~~vaSd~~al~~~t~~~~~L~dgei~~i 214 (608)
.-.|++-|..-+..++++++.|++|+++.-
T Consensus 221 tvl~ItHdl~~v~~~aDrv~Vm~~G~ive~ 250 (623)
T PRK10261 221 GVIFITHDMGVVAEIADRVLVMYQGEAVET 250 (623)
T ss_pred CCEEECCCHHHHHCCCCEEEEEECCEEEEE
T ss_conf 520553778998524774799768878985
No 304
>KOG2535 consensus
Probab=30.03 E-value=33 Score=13.55 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCC-CHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCCCCCCCCC-CCCCCHH
Q ss_conf 788-1899999999863024424651--178763100024101367420-0110007
Q gi|254780943|r 347 SGE-TADTLASLRYMRTQGLTIGSLV--NVLESTIARESDFIFPIKAGP-EIGVAST 399 (608)
Q Consensus 347 SGe-T~dti~Al~~ak~~g~~tiaIt--N~~~S~la~~aD~~i~~~aG~-Ei~VasT 399 (608)
||- |+++-+|+++..+.-.++++|| ..|+=.+-+.-+--+..+|.. ||||-|+
T Consensus 201 SGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~ 257 (554)
T KOG2535 201 SGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSV 257 (554)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 278754789998740312340356896127742212669999860871378510035
No 305
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=30.03 E-value=32 Score=13.64 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECC
Q ss_conf 98625667314304201001233445550577526
Q gi|254780943|r 312 FERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQ 346 (608)
Q Consensus 312 ~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQ 346 (608)
++.+..+|=..+.|.-|... ......|-|+--|
T Consensus 29 ~~Al~~v~Re~F~P~~fk~~--AY~~~al~ig~~q 61 (228)
T TIGR00080 29 LDALKSVPREEFVPEAFKEA--AYEDAALEIGYGQ 61 (228)
T ss_pred HHHHHCCCCCCCCCHHHHHC--CCCCCCCCCCCCC
T ss_conf 99974187623367166637--8525520025676
No 306
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=30.02 E-value=33 Score=13.55 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 55057752678818999999998630244246511787631000241013674
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~a 390 (608)
.+++|.+.+.=|. -|++.|++.|.++++|+.+--.| ...|+.||-|-
T Consensus 160 PDlvfViD~~kE~----iAV~EA~kLgIPvIaIvDTN~dP--~~IdYpIPgND 206 (332)
T PRK12311 160 PDLIFVIDTNKED----IAIQEAQRLGIPVAAIVDTNCDP--KGITYLVPGND 206 (332)
T ss_pred CCEEEEECCCCCH----HHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCCC
T ss_conf 9989996897338----99999998097989997389998--65775684865
No 307
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=29.98 E-value=23 Score=14.56 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=23.7
Q ss_pred ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf 036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r 297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ 346 (608)
Q Consensus 297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ 346 (608)
|||||- ||..+.+. .|+. +++|.-|. |++.. +-.-|-|..++
T Consensus 73 GcGSSREHApwALk~-----~Gi~--~VIA~SFAdIFy~Na~-nnG~Lpi~~~~ 118 (191)
T COG0066 73 GCGSSREHAPWALKD-----YGIR--AVIAPSFADIFYRNAI-NNGLLPIVLAE 118 (191)
T ss_pred CCCCCHHHHHHHHHH-----CCEE--EEEECCHHHHHHHHHH-HCCCCCEECCH
T ss_conf 788527789999997-----5924--9993629999870156-50867555183
No 308
>KOG1985 consensus
Probab=29.71 E-value=33 Score=13.52 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 876343200102677999999887512
Q gi|254780943|r 130 LLEKFIKNGSSKKETMQKLMQCLTGSY 156 (608)
Q Consensus 130 li~~~~~~~~~~~~ai~~~~~~l~G~y 156 (608)
++.+....+..+-.|++.+.+.+....
T Consensus 396 ~F~~~~~t~~alGpALkaaf~li~~~G 422 (887)
T KOG1985 396 MFQDTRSTGSALGPALKAAFNLIGSTG 422 (887)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 876426764334799999999876328
No 309
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=29.54 E-value=33 Score=13.50 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCE
Q ss_conf 510352036543079999999986256673143042010012334455505775267881899999-99986302442
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLAS-LRYMRTQGLTI 367 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~A-l~~ak~~g~~t 367 (608)
++|-+||+| =|||+++|++.+ .|..|.|+.+.+- ...-+..+|-.===..++++. ++..++.|...
T Consensus 538 kKVAVIGsG---PAGLaAA~~Lar-~Gh~VTVFEk~~~-------~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f 604 (1012)
T TIGR03315 538 HKVAVIGAG---PAGLSAGYFLAR-AGHPVTVFEKKEK-------PGGVVKNIIPEFRISAESIQKDIELVKFHGVEF 604 (1012)
T ss_pred CEEEEECCC---HHHHHHHHHHHH-CCCCEEEEECCCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 889998977---899999999997-7995699815897-------885478558877789999999999999689699
No 310
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=29.42 E-value=33 Score=13.49 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=70.9
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCC-CEEE-----ECCCCEEEEEECCCCEECCCCCCC
Q ss_conf 1222010046872389997499607760896136613762011111-0379-----827651889730574100333222
Q gi|254780943|r 155 SYSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLT-DKVT-----YMEDGDWAIIRNSGLTIYDSQGYE 228 (608)
Q Consensus 155 ~ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t-~~~~-----~L~dgei~~i~~~~~~i~~~~~~~ 228 (608)
+||++++.+.-=++++.+==..= +-+++.+=-+|..+|.+.. .++. .++|=|+++|+.+.-+ ++
T Consensus 10 s~A~a~~~~g~a~E~vliDin~~----ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc~daD~vVITAG~~Q------KP 79 (302)
T TIGR01771 10 STAFALLNQGLADEIVLIDINKD----KAEGEAMDLQHAASFLPTPGVKVRAGDYSDCKDADLVVITAGAPQ------KP 79 (302)
T ss_pred HHHHHHHHCCCCCEEEEEECCHH----HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCCEEEEECCCCC------CC
T ss_conf 99999973150318878834757----789878655222222378611776189799638978999327775------34
Q ss_pred CCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC-CCCCHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 10001100012100001407899999974178999998715747664521-11100002356551035203654307999
Q gi|254780943|r 229 IERPIQIVQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTI-IPNIFNYDFANISGLLVSSCGTSYLAGLV 307 (608)
Q Consensus 229 ~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~I~~vGcGTSy~Aal~ 307 (608)
=+.+.+.++-| ++ ++|+|- |++.+...++.+-.-.+++ .....-+++..+.+=.++|+||..=.|-
T Consensus 80 GEtRL~Lv~~N--------~~--I~K~Iv--~~v~k~gf~gI~lvatNPVDIlTy~~~klSGfP~~rVIGSGT~LDTaR- 146 (302)
T TIGR01771 80 GETRLELVDRN--------VK--IMKSIV--PEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTAR- 146 (302)
T ss_pred CCCHHHHHHHH--------HH--HHHHHH--HHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH-
T ss_conf 88879999988--------99--999985--465413898479998663158999999874787200775066135589-
Q ss_pred HHHHHHHHCCCCCEEEEC
Q ss_conf 999998625667314304
Q gi|254780943|r 308 GKFWFERLARLKVEIDVS 325 (608)
Q Consensus 308 ~~~~~e~~~~i~v~v~~a 325 (608)
-+|++-+.++++.+...|
T Consensus 147 fR~~l~~~~~v~p~sVha 164 (302)
T TIGR01771 147 FRYLLAEKLGVDPQSVHA 164 (302)
T ss_pred HHHHHHHHHCCCCCCCCC
T ss_conf 999999985798442120
No 311
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=29.23 E-value=28 Score=14.03 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 818999999998630244246511787
Q gi|254780943|r 349 ETADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 349 eT~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
-..++.++++..|++|.++..+||.+.
T Consensus 25 ~~pg~~e~l~~L~~~G~~v~ivTn~~~ 51 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 985899999999987997999929889
No 312
>KOG2969 consensus
Probab=29.20 E-value=34 Score=13.46 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=9.5
Q ss_pred CCCCCHHHHH-HHHHHHHCCCCEEEE
Q ss_conf 6788189999-999986302442465
Q gi|254780943|r 346 QSGETADTLA-SLRYMRTQGLTIGSL 370 (608)
Q Consensus 346 QSGeT~dti~-Al~~ak~~g~~tiaI 370 (608)
-||..+-..+ +++..-+.|..-=+|
T Consensus 44 isgkkaliaena~efVPehGFsE~aI 69 (264)
T KOG2969 44 ISGKKALIAENALEFVPEHGFSEDAI 69 (264)
T ss_pred ECCHHHHHHHHHHHHCHHCCCCHHHH
T ss_conf 24346888898998562118868889
No 313
>PRK07116 flavodoxin; Provisional
Probab=28.73 E-value=34 Score=13.41 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5505775267881899999999863024424651
Q gi|254780943|r 338 KWASLFISQSGETADTLASLRYMRTQGLTIGSLV 371 (608)
Q Consensus 338 ~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt 371 (608)
++||+.-|+||.|..+-+. .++.-|+.++-|.
T Consensus 2 K~LVvYyS~tGnTk~vA~~--I~~~~gaDi~eI~ 33 (158)
T PRK07116 2 KILVAYFSATGTTKKVAEK--LAEVTGGDLYEIT 33 (158)
T ss_pred CEEEEEECCCCCHHHHHHH--HHHHHCCCEEEEE
T ss_conf 7899998998809999999--9998799979998
No 314
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.51 E-value=35 Score=13.38 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=26.4
Q ss_pred ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 388999976815068999899997898897247615678887
Q gi|254780943|r 90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLL 131 (608)
Q Consensus 90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li 131 (608)
.-+++|+=.|+=.+..++..- .+.|..+.+ |.|+...+.
T Consensus 77 ~~d~vv~SPgI~~~~p~~~~a-~~~gi~v~~--e~el~~~~~ 115 (458)
T PRK01710 77 GFDVIFKTPSMRIDSPELVKA-KEEGAYITS--EMEEFIKYC 115 (458)
T ss_pred CCCEEEECCCCCCCCHHHHHH-HHCCCCEEC--HHHHHHHHC
T ss_conf 888899899879989999999-987993740--999998637
No 315
>PRK05868 hypothetical protein; Validated
Probab=28.47 E-value=35 Score=13.38 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.2
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999458658998
Q gi|254780943|r 42 IQCVRAQGKLSEL 54 (608)
Q Consensus 42 i~~~K~~g~i~~l 54 (608)
+.+.+..|..+.+
T Consensus 50 ~~vL~~mGl~d~~ 62 (372)
T PRK05868 50 LDVLERMGLLAAA 62 (372)
T ss_pred HHHHHHCCCHHHH
T ss_conf 9999987897899
No 316
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.33 E-value=29 Score=13.92 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999998387798897
Q gi|254780943|r 580 IQMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 580 lQllAy~~A~~~G~dpD~PR 599 (608)
...|++.+....|++.+.|.
T Consensus 237 ~~~l~~~L~~~~g~~~~~~~ 256 (276)
T PRK13634 237 TVKFKRALEEKFGISFPKPT 256 (276)
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999896599999888
No 317
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=28.14 E-value=35 Score=13.34 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 88999999998279808999565
Q gi|254780943|r 526 QKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 526 ~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
..+...+++++.+|-.+++++.+
T Consensus 175 ~~i~~li~~l~~~g~tvi~vtHd 197 (255)
T PRK11231 175 VELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99999999998689999999378
No 318
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.08 E-value=28 Score=14.03 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999983877988
Q gi|254780943|r 580 IQMIAYCTAVLIGTDVDQ 597 (608)
Q Consensus 580 lQllAy~~A~~~G~dpD~ 597 (608)
+..|+..+ ..+|++...
T Consensus 249 ~~~l~~~L-~~~g~~~~~ 265 (287)
T PRK13637 249 VTYLVRKL-RKKGFNIPD 265 (287)
T ss_pred HHHHHHHH-HHCCCCCCC
T ss_conf 99999999-975999998
No 319
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=28.01 E-value=27 Score=14.11 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEEE--CCC-----CEEEECCCCCEEEE-
Q ss_conf 7615678887634320010267799999988751222010046---872389997--499-----60776089613661-
Q gi|254780943|r 122 TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED---DPHSIIVAR--KGP-----PLIIGHGEGEMFVG- 190 (608)
Q Consensus 122 tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~---~p~~i~~ar--~gs-----PL~iG~~~~~~~va- 190 (608)
.|++=+.-||+--++.=..+.. ..++.+-+.+..-+ +-++|...| +|. --.+-..|++..--
T Consensus 185 ~~~~~m~PLFd~I~~hvPaP~~-------~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk~Gq~V~~~~~d~g~~~~~ 257 (609)
T TIGR01394 185 DDSEDMAPLFDAILRHVPAPKG-------DLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDDGTIENG 257 (609)
T ss_pred CCHHHHHHHHHHHHHCCCCCCC-------CCCCCHHHEEEECCCCCCCCEEEEEEEEECEECCCCEEEEEECCCCEEEEE
T ss_conf 7220178999898640688898-------887624210001101467766999987505654686479872469689777
Q ss_pred --CCCCCCCCCCCEEE-ECCCCEEEEEE-CCCCEE
Q ss_conf --37620111110379-82765188973-057410
Q gi|254780943|r 191 --SDVTALTLLTDKVT-YMEDGDWAIIR-NSGLTI 221 (608)
Q Consensus 191 --Sd~~al~~~t~~~~-~L~dgei~~i~-~~~~~i 221 (608)
|+.-++.+..+.-+ .-+.|||+.|. -..+.|
T Consensus 258 ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~~~~I 292 (609)
T TIGR01394 258 RISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINI 292 (609)
T ss_pred EEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCC
T ss_conf 76454201571100045579877899907798873
No 320
>pfam09194 Endonuc-BsobI Restriction endonuclease BsobI. Members of this family of prokaryotic restriction endonucleases recognize the double-stranded sequence CYCGRG (where Y = T/C, and R = A/G) and cleave after C-1. They catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates.
Probab=27.91 E-value=35 Score=13.31 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=59.9
Q ss_pred ECCCCCCHHH---HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5267881899---9999998630244246511787631000241013674200110007888999999999999977621
Q gi|254780943|r 344 ISQSGETADT---LASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVR 420 (608)
Q Consensus 344 iSQSGeT~dt---i~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~ 420 (608)
++++-..+|. +..+.+-.+.+.+|+-..+++ .-.-+..|.++ .+|-||. ++.-|.++ -.-.| +.+|+.+
T Consensus 164 ~~~~~dd~eie~~lrglsW~~~~~~RTliYN~~V-pivkkNvDicL-fn~~~~~-~~~~k~~~--~~~~Y---iALGELK 235 (316)
T pfam09194 164 RDAPEDDPELELLLRGLSWLNNGQPRTLIYNNTV-PLVKKNIDICL-FNCDPTQ-LANQKILQ--SPDLY---IALGELK 235 (316)
T ss_pred HHCCCCCHHHHHHHHCCEECCCCCCEEEEEECCC-CCCCCCCCEEE-ECCCHHH-HHHHHHHC--CHHHH---HHHHHHC
T ss_conf 5078864778999722422158984069994255-20147653698-5388787-64301213--88988---6676650
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 200157763227999875999999999767744677987420361455213664499999
Q gi|254780943|r 421 GYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALE 480 (608)
Q Consensus 421 g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~E 480 (608)
|-|+....++.-+- . ..+|.+ +++.-.......+.||+|.-+--.+|.|
T Consensus 236 GGIDPAGADEHWKT---A----ntAL~R----ir~aF~~~~~~p~tFFIGAAIE~~MA~E 284 (316)
T pfam09194 236 GGIDPAGADEHWKT---A----NTALQR----IRDAFSKISLSPYTFFIGAAIEKSMAEE 284 (316)
T ss_pred CCCCCCCCCHHHHH---H----HHHHHH----HHHHHHHCCCCCEEEEEHHHHHHHHHHH
T ss_conf 79898887602567---9----999999----9999984689972776358888889999
No 321
>PHA01735 hypothetical protein
Probab=27.87 E-value=35 Score=13.30 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=24.2
Q ss_pred CCCC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 6788--18999999998630244246511787631000241
Q gi|254780943|r 346 QSGE--TADTLASLRYMRTQGLTIGSLVNVLESTIARESDF 384 (608)
Q Consensus 346 QSGe--T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~ 384 (608)
+||| |.|.-.|.++.|..+..-+++ .+|||...++.
T Consensus 26 ksGeAttaDL~aA~~~LKdN~I~gva~---egsPL~~La~~ 63 (76)
T PHA01735 26 KSGEATTADLRAACDWLKSNDITGVAV---DGSPLAKLAGL 63 (76)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEC---CCCHHHHHHHH
T ss_conf 078887999999999999879662367---99869999875
No 322
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=27.85 E-value=22 Score=14.75 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 267881899999999863024424651178763100024101
Q gi|254780943|r 345 SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 345 SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
.-.|-.-+|..=.+..|.-|+.+++.|+.|+-.|||++....
T Consensus 163 ~~~GP~feT~AE~r~~r~~GaDvVGMT~vPEa~LARE~gi~y 204 (290)
T PRK07432 163 CMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAY 204 (290)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf 833798787999999998198822687447999998759965
No 323
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=27.58 E-value=36 Score=13.27 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=36.5
Q ss_pred EEEEECCCCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 05775267881---8999999998630244246511787631000241013
Q gi|254780943|r 340 ASLFISQSGET---ADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFP 387 (608)
Q Consensus 340 lvI~iSQSGeT---~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~ 387 (608)
-|-.|...|+- ..+-+|++.|++.|...+-|....+-|+++.-|+.=+
T Consensus 19 ~VrlI~~dG~~lGv~~~~eAl~~A~~~~LDLV~vs~~~~PPVcKi~dygK~ 69 (175)
T PRK00028 19 EVRLIGDDGEQLGVVSIREALRLAEEAGLDLVEISPNAKPPVCKIMDYGKF 69 (175)
T ss_pred EEEEECCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHH
T ss_conf 899998999698846499999999981994899878999986898507789
No 324
>PRK10908 cell division protein FtsE; Provisional
Probab=27.57 E-value=36 Score=13.27 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 46889999999982798089995653
Q gi|254780943|r 524 FFQKTLSNIQEIVTRGGRVIFITDEE 549 (608)
Q Consensus 524 ~~~k~~s~~~Ei~arg~~vi~I~~~~ 549 (608)
..+.....++++...|..++++|.+-
T Consensus 172 ~~~~v~~~l~~l~~~g~tvl~vtHd~ 197 (222)
T PRK10908 172 LSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99999999999986199999994799
No 325
>TIGR01070 mutS1 DNA mismatch repair protein MutS; InterPro: IPR005748 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair.
Probab=27.26 E-value=36 Score=13.23 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4101367420011000788899999999999
Q gi|254780943|r 383 DFIFPIKAGPEIGVASTKAFTCQLLVLVIMA 413 (608)
Q Consensus 383 D~~i~~~aG~Ei~VasTKsftaql~~l~lla 413 (608)
|..+.+=.||-.|-=|| |.=|++...+||
T Consensus 602 nr~~lliTGPNM~GKST--YmRQtALIallA 630 (863)
T TIGR01070 602 NRRLLLITGPNMGGKST--YMRQTALIALLA 630 (863)
T ss_pred CCEEEEEECCCCCCHHH--HHHHHHHHHHHH
T ss_conf 85688886687975317--999999999999
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=27.23 E-value=36 Score=13.23 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=22.9
Q ss_pred CEEEECCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 13661376201111103798276518897
Q gi|254780943|r 186 EMFVGSDVTALTLLTDKVTYMEDGDWAII 214 (608)
Q Consensus 186 ~~~vaSd~~al~~~t~~~~~L~dgei~~i 214 (608)
-.+++-+..-+..++++++.|+||.++.-
T Consensus 193 il~isH~l~~~~~~~Drv~vl~~G~iv~~ 221 (501)
T PRK11288 193 ILYVSHRMEEIFALCDAITVFRDGRYVAT 221 (501)
T ss_pred EEEECCCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 26513328999975887897118859976
No 327
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.21 E-value=30 Score=13.76 Aligned_cols=68 Identities=15% Similarity=-0.005 Sum_probs=40.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCE
Q ss_conf 65510352036543079999999986256673143042010012334455505775267881899999-99986302442
Q gi|254780943|r 289 NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLAS-LRYMRTQGLTI 367 (608)
Q Consensus 289 ~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~A-l~~ak~~g~~t 367 (608)
+-++|-+||+| =|+|.++|++.+ .|..|.++.+.+- ...-|.-+|-.-==..++++. ++..++.|...
T Consensus 438 ~GkKVAVIGsG---PAGLsaA~~La~-~G~~VtVFE~~~~-------~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~ 506 (760)
T PRK12778 438 NGIKVAVIGSG---PAGLSFAGDMAK-YGYDVTVFEALHE-------IGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTF 506 (760)
T ss_pred CCCEEEEECCC---HHHHHHHHHHHH-CCCEEEEEECCCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 89989998977---899999999997-7990699805888-------897576548611087899999999998649799
No 328
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.19 E-value=36 Score=13.22 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=25.0
Q ss_pred ECCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 3889999768150689998999978988972476156788
Q gi|254780943|r 90 IEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIAC 129 (608)
Q Consensus 90 ~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~ 129 (608)
.-++.|+--|+=.+..+++. ..++|.... +|.|+.+.
T Consensus 68 ~~d~vV~SPGI~~~~p~~~~-a~~~~i~i~--~eiel~~~ 104 (438)
T PRK04663 68 EADLVVTNPGIALATPEIQP-VLAKGIPVV--GDIELFAW 104 (438)
T ss_pred CCCEEEECCCCCCCCHHHHH-HHHCCCCEE--CHHHHHHH
T ss_conf 89999989976998989999-998699370--38899976
No 329
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=27.09 E-value=37 Score=13.21 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.3
Q ss_pred CC-CCEEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 03-61455213664--49999999999997
Q gi|254780943|r 462 KC-QTLLYVGRGSS--YPLALEGALKIKEI 488 (608)
Q Consensus 462 ~~-~~~~~lG~G~~--y~~A~EgALKlkE~ 488 (608)
+. ++..+|-.|+- -|+++=++-+|++|
T Consensus 94 ~isenL~vi~sG~vPPNPt~LL~s~~F~~l 123 (207)
T TIGR01007 94 NISENLDVITSGPVPPNPTELLQSSNFKTL 123 (207)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 546787275178878775478888999999
No 330
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=26.98 E-value=24 Score=14.54 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 67881899999999863024424651178763100024101
Q gi|254780943|r 346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
-+|-+-+|..=.+..|..|+.+++.|+.|+-.+||++....
T Consensus 156 ~~GP~fET~AEir~~r~~GaDvVGMTtvPEv~lAre~gi~y 196 (264)
T PRK07823 156 IQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCY 196 (264)
T ss_pred EECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCE
T ss_conf 87898788999999998299984487228999998769965
No 331
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=26.83 E-value=37 Score=13.18 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=9.4
Q ss_pred CCCCEEEEECCCC
Q ss_conf 6551035203654
Q gi|254780943|r 289 NISGLLVSSCGTS 301 (608)
Q Consensus 289 ~~~~I~~vGcGTS 301 (608)
...++.++|+|-+
T Consensus 144 ~~~~v~vvGgG~~ 156 (364)
T TIGR03169 144 GTKRLAVVGGGAA 156 (364)
T ss_pred CCCCEEEECCCHH
T ss_conf 9964589785817
No 332
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=26.70 E-value=37 Score=13.17 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=30.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 577526788189999999986302442465117876--3100024101367420011
Q gi|254780943|r 341 SLFISQSGETADTLASLRYMRTQGLTIGSLVNVLES--TIARESDFIFPIKAGPEIG 395 (608)
Q Consensus 341 vI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S--~la~~aD~~i~~~aG~Ei~ 395 (608)
+++-|-||.|+=+-+.++..+++|.++..|=-...- .-....|..-.-.||.+..
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa~~~ 63 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQV 63 (161)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCEE
T ss_conf 996279973428999999997579379999865877777889876610003566349
No 333
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=26.68 E-value=37 Score=13.16 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=84.4
Q ss_pred CCCCCCCCEEEEECCC------CCCHHHH---HHHHHHHHCCCCCEEE----ECCH-HH-CCCCCCCCCCEEEEEC---C
Q ss_conf 0235655103520365------4307999---9999986256673143----0420-10-0123344555057752---6
Q gi|254780943|r 285 YDFANISGLLVSSCGT------SYLAGLV---GKFWFERLARLKVEID----VSSE-FR-YRDFVYSSKWASLFIS---Q 346 (608)
Q Consensus 285 ~~~~~~~~I~~vGcGT------Sy~Aal~---~~~~~e~~~~i~v~v~----~asE-f~-y~~~~~~~~tlvI~iS---Q 346 (608)
....+.+-+|++|.=. |---|+. =+-+|+....+.-... .--| |. |.-....++-|+|.=+ .
T Consensus 602 ~k~~n~k~~y~lG~NDGv~P~~~~e~GilsD~eR~~L~~~~q~~L~~~~~~~~~dE~Fl~Y~A~t~ase~L~~SYplaD~ 681 (1192)
T TIGR02773 602 AKMSNTKVIYLLGVNDGVLPARSKEEGILSDEERELLEQKGQVELSSTSKEKLLDEQFLVYTAFTSASERLKVSYPLADA 681 (1192)
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 00058726999745776568887767754689999998516501263023321157899999870785536885213561
Q ss_pred CCCCHHHHHHHHHHHHC--CCCEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 78818999999998630--244246511787--63100024101367420011000788899999999999997-76212
Q gi|254780943|r 347 SGETADTLASLRYMRTQ--GLTIGSLVNVLE--STIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYA-GKVRG 421 (608)
Q Consensus 347 SGeT~dti~Al~~ak~~--g~~tiaItN~~~--S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l-~~~~g 421 (608)
-|++..-=.-++..++. +.+.-.+++.++ |---+..-..-+. .|++++.. -|..|. +....
T Consensus 682 EGk~~~pS~~i~rl~~lFp~~k~~~~~~~~~~~sD~~~l~~v~~~~---------~t~~~l~~-----~L~~w~~~~~~~ 747 (1192)
T TIGR02773 682 EGKSLRPSIIIHRLKELFPKLKESLLLVEPEDVSDEEQLSYVSAKL---------PTLSELTS-----QLKKWKRGYPIS 747 (1192)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCH---------HHHHHHHH-----HHHHHCCCCCCC
T ss_conf 2412475637899998602231112010542112224576514621---------67899999-----999843156766
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC--CCCE-EEEECCCCHHHH-----HHHHHHHH
Q ss_conf -0015776322799987599999999976------7744677987420--3614-552136644999-----99999999
Q gi|254780943|r 422 -YINEEQERELIRSLVEIPRKMFDVLQNI------YSQIEKLCCGLAK--CQTL-LYVGRGSSYPLA-----LEGALKIK 486 (608)
Q Consensus 422 -~i~~~~~~~~~~~L~~lp~~i~~~l~~~------~~~i~~~a~~~~~--~~~~-~~lG~G~~y~~A-----~EgALKlk 486 (608)
-+=.+.|+.+.+. ......++.+|... ..-=+..++.|.. .+++ .=+.|=-.|.-| -.=.||++
T Consensus 748 ~~vW~~vY~~y~~~-~~~~~~~~~vl~gL~Y~N~~~~l~~~~~~~LYgdnk~~I~~SVSRlE~Y~~CpF~hfa~yGLkl~ 826 (1192)
T TIGR02773 748 DDVWWDVYQWYREE-DKWKKKLEYVLSGLVYDNKTKKLQKEKAKKLYGDNKERIQASVSRLEKYNACPFAHFAQYGLKLK 826 (1192)
T ss_pred CCHHHHHHHHHHCC-CHHHHHHHHHHHCCEEECCCCCCCHHHHHHCCCCCCCEEEEEEECCHHHCCCCHHHHHHCCCCCC
T ss_conf 51258778886207-82212288886052221664427978997316744114723440100001783255650253200
Q ss_pred HHHHHHCCCCCHHHCCCCCHHHHC
Q ss_conf 974221144232431446378807
Q gi|254780943|r 487 EISYLHAEGYAAGELKHGPIALIT 510 (608)
Q Consensus 487 E~syihaeg~~agE~kHGP~ali~ 510 (608)
|=..--=|+.--|+|.|+-+..|.
T Consensus 827 ER~~Y~L~apDlG~~fH~~L~~Is 850 (1192)
T TIGR02773 827 ERKIYKLEAPDLGQLFHEALKEIS 850 (1192)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 255256799636789999999999
No 334
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=26.55 E-value=37 Score=13.15 Aligned_cols=21 Identities=10% Similarity=0.390 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899999999863024424651
Q gi|254780943|r 351 ADTLASLRYMRTQGLTIGSLV 371 (608)
Q Consensus 351 ~dti~Al~~ak~~g~~tiaIt 371 (608)
.--|.|+++||+.+.+-+|||
T Consensus 389 EGKI~Ai~yAREN~iPFLGIC 409 (571)
T TIGR00337 389 EGKIRAIKYARENNIPFLGIC 409 (571)
T ss_pred HHHHHHHHHHHHCCCCEEEHH
T ss_conf 247899999876369733021
No 335
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=26.48 E-value=31 Score=13.74 Aligned_cols=11 Identities=36% Similarity=0.226 Sum_probs=4.8
Q ss_pred EEEECCCCCCH
Q ss_conf 57752678818
Q gi|254780943|r 341 SLFISQSGETA 351 (608)
Q Consensus 341 vI~iSQSGeT~ 351 (608)
+|+-|=||+|+
T Consensus 35 iiGpNGaGKST 45 (262)
T PRK09984 35 LLGPSGSGKST 45 (262)
T ss_pred EECCCCCHHHH
T ss_conf 99899960999
No 336
>PRK00758 GMP synthase subunit A; Validated
Probab=26.44 E-value=38 Score=13.13 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10352036543079999999986256673143042010012334455505775267881899999999863024424651
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLV 371 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaIt 371 (608)
||+++=+|+||.- ..+++ +++ .+..+.+... +....+ .....+- |.+|-.-...+.-.+.+..++.+.+++|||
T Consensus 1 kIlviD~~dsft~-ni~~~-l~~-~g~~v~v~~~-~~~~~~-i~~~~dg-iilS~GP~~~~~~~~~~~i~~~~iPiLGIC 74 (184)
T PRK00758 1 KILVINNGGQYNH-LIHRT-LRY-LGVDAKIIPN-TTPLEE-IKAEPDG-IILSGGPEIERAGNCEEYLLELDVPILGIC 74 (184)
T ss_pred CEEEEECCCHHHH-HHHHH-HHH-CCCEEEEEEC-CCCHHH-HHHCCCE-EEECCCCCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 9999989863899-99999-997-8992899959-898999-9638998-998899983332206999986599889971
No 337
>KOG0898 consensus
Probab=26.30 E-value=25 Score=14.42 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.6
Q ss_pred CEEECCEEEEECCEECCHHHHHHHH
Q ss_conf 5023889999768150689998999
Q gi|254780943|r 87 PHCIEGIAVTHNGIIENFSRLKKEH 111 (608)
Q Consensus 87 P~~~~~~~vvHNG~I~N~~elr~~l 111 (608)
|-..|.++.||||.-.|..|+|-+.
T Consensus 94 PEMvGs~VGVyNGK~FnqvEiKPEM 118 (152)
T KOG0898 94 PEMVGSMVGVYNGKTFNQVEIKPEM 118 (152)
T ss_pred HHHHCCEEEEECCCCCCEEECCHHH
T ss_conf 8662635777617523313314788
No 338
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=26.27 E-value=38 Score=13.11 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8999999998279808999565321
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEEGL 551 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~~~ 551 (608)
...+.+.++|+||+.+++|+.....
T Consensus 510 AL~~Ai~~~k~rG~~vvviaHRPs~ 534 (580)
T COG4618 510 ALAAAILAAKARGGTVVVIAHRPSA 534 (580)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999999999769879999267778
No 339
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.05 E-value=38 Score=13.09 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHHCCCCEEE
Q ss_conf 5550577526788189-99999998630244246
Q gi|254780943|r 337 SKWASLFISQSGETAD-TLASLRYMRTQGLTIGS 369 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~d-ti~Al~~ak~~g~~tia 369 (608)
.+-..|+||++|+|.- ..-|++..|..+.+.+.
T Consensus 145 ADvILvGVSRtsKTPtS~YLA~q~ikaAN~PlVp 178 (273)
T COG1806 145 ADVILVGVSRTSKTPTSLYLALQGIKAANYPLVP 178 (273)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHCCHHCCCCCCC
T ss_conf 5889994046789806999987120330678578
No 340
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.04 E-value=38 Score=13.09 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=20.7
Q ss_pred ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf 036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r 297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ 346 (608)
Q Consensus 297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ 346 (608)
|||||- ||..+-+ ..|++ +..|.-|. |++. ++-.-|.|.+++
T Consensus 28 G~GSSREhA~~al~-----~~Gi~--~VIa~SFa~If~~N~-~n~GlLpi~~~~ 73 (91)
T cd01577 28 GCGSSREHAPWALK-----DAGIR--AVIAESFARIFFRNA-INNGLLPVTLAD 73 (91)
T ss_pred CCCCCHHHHHHHHH-----HCCCE--EEEEHHHHHHHHHHH-HHCCCCEEEECH
T ss_conf 77852899999999-----84954--999723999999988-877851288688
No 341
>PRK05638 threonine synthase; Validated
Probab=25.99 E-value=38 Score=13.08 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88189999999986302442465
Q gi|254780943|r 348 GETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 348 GeT~dti~Al~~ak~~g~~tiaI 370 (608)
|.-.+...+++..|+.|-..+++
T Consensus 281 ~~P~~~~~~l~avr~sgG~~vaV 303 (443)
T PRK05638 281 KNPVMKEKVIEAIRESGGTAVVV 303 (443)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEC
T ss_conf 89889999999999839989982
No 342
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=25.90 E-value=38 Score=13.07 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=6.7
Q ss_pred HCCCCEEEEEEC
Q ss_conf 079871899944
Q gi|254780943|r 509 ITEGTFVIAIAP 520 (608)
Q Consensus 509 i~~~~~vi~i~~ 520 (608)
|.+++-|..|-.
T Consensus 690 iKRG~~V~vI~~ 701 (794)
T TIGR02865 690 IKRGAKVEVIRS 701 (794)
T ss_pred EEECCEEEEEEE
T ss_conf 666788999862
No 343
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=25.77 E-value=22 Score=14.77 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCEEEEECCEECCHHHHH---HHHHH-CCCEEEE--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 889999768150689998---99997-8988972--47615678887634320010267799999988751222010046
Q gi|254780943|r 91 EGIAVTHNGIIENFSRLK---KEHFS-SQQVFLT--ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED 164 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~elr---~~l~~-~g~~f~s--~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ya~~il~~~ 164 (608)
...+||-.=.++=.+.|+ ++|.. ..+.|.. ++|.+-. ++.-+....|+.| +..+=+|-=|+-|.-..
T Consensus 140 ~EaSlv~G~~~y~~~~L~~vv~fl~ql~~~~L~~~t~~~~~~~---~~~s~~~~~DL~d----v~GQ~~akRAleIAaAG 212 (505)
T TIGR00368 140 EEASLVDGLNVYGADHLKEVVKFLEQLGSEKLPPRTNTKAKSI---INVSLIIDLDLKD----VKGQQHAKRALEIAAAG 212 (505)
T ss_pred CCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH---HHHCCHHHCCCCC----CCCHHHCCHHHHHHHHC
T ss_conf 5202663874020474899999997623101777545553103---4413201044322----54510110267775313
Q ss_pred CCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 8723899974996077608961366137620111110379827651889
Q gi|254780943|r 165 DPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAI 213 (608)
Q Consensus 165 ~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~ 213 (608)
.-|.|++ |.| |.|.++.+|=..+|++- |.|-|..+
T Consensus 213 GHNlll~---GPP-----GsGKTmla~r~~giLP~------L~~~EalE 247 (505)
T TIGR00368 213 GHNLLLL---GPP-----GSGKTMLASRLQGILPP------LTNEEALE 247 (505)
T ss_pred CCCEEEE---CCC-----CCCHHHHHHHHHCCCCC------CCCHHHHH
T ss_conf 5643767---824-----96268999875105786------45126666
No 344
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=25.68 E-value=39 Score=13.04 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=52.3
Q ss_pred EEECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEEEC
Q ss_conf 52036543-07999999998625667314304201001233445550577526788189999-99998630244246511
Q gi|254780943|r 295 VSSCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLA-SLRYMRTQGLTIGSLVN 372 (608)
Q Consensus 295 ~vGcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~-Al~~ak~~g~~tiaItN 372 (608)
-+|.|||- ++.+.|+=+..+|..-.| +-||.-|-.|+-+..=. -+|...+.|.+++-+||
T Consensus 313 TvG~GT~~~~s~~~AkE~~~~L~~~~V------------------DaVIlTST~GTCTRCGATMVKEIERaG~PvV~~C~ 374 (433)
T TIGR01918 313 TVGNGTTVAESKQFAKEFVKELLEGGV------------------DAVILTSTKGTCTRCGATMVKEIERAGIPVVHMCT 374 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCC------------------CEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEECC
T ss_conf 247735578788899999999982798------------------88998168885544556200012316987476402
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCHH
Q ss_conf 787631000241013674200-110007
Q gi|254780943|r 373 VLESTIARESDFIFPIKAGPE-IGVAST 399 (608)
Q Consensus 373 ~~~S~la~~aD~~i~~~aG~E-i~VasT 399 (608)
..-=+++--|+..+|+=+=|- .|=|||
T Consensus 375 ~~Pia~TVGAN~IvPtIaIP~PLGdPa~ 402 (433)
T TIGR01918 375 VIPIALTVGANRIVPTIAIPHPLGDPAL 402 (433)
T ss_pred EEEECCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 0100001364423363253888878768
No 345
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=25.56 E-value=39 Score=13.03 Aligned_cols=52 Identities=8% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCCCCEEEEECCCCC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 445550577526788--1899999999863024424651178763100024101
Q gi|254780943|r 335 YSSKWASLFISQSGE--TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 335 ~~~~tlvI~iSQSGe--T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
+..-+-++..-=+|. ..-.+.|+++||+.+.+.+|||--.+..+-..|-.++
T Consensus 53 L~~~dgilvpgGFG~rG~eGki~Ai~yARen~iPfLGIClGmQ~aviE~ARnvl 106 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVL 106 (235)
T ss_pred HHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 730697895788887764588999999997399725441034322689998752
No 346
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=25.50 E-value=39 Score=13.02 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 555057752678818999999998630244246511787
Q gi|254780943|r 337 SKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 337 ~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
.+-+.+++|++|+|+- ++-.|. +|.++.-+-=+|+
T Consensus 138 ADiiLvGVSRtsKTP~---S~YLA~-~G~KvAN~PLvp~ 172 (255)
T pfam03618 138 ADIILVGVSRTSKTPT---SLYLAN-KGIKVANYPLVPE 172 (255)
T ss_pred CCEEEEECCCCCCCCH---HHHHHH-CCCCEEEECCCCC
T ss_conf 8899982255789837---899985-5852241167799
No 347
>TIGR02860 spore_IV_B stage IV sporulation protein B; InterPro: IPR014219 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else. The members of this entry belong to MEROPS peptidase family S55 (SpoIVB peptidase, clan PA)..
Probab=25.39 E-value=32 Score=13.59 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCE-----EECCEEEEECCE-ECCHHHHHHHHHHCC
Q ss_conf 750-----238899997681-506899989999789
Q gi|254780943|r 86 HPH-----CIEGIAVTHNGI-IENFSRLKKEHFSSQ 115 (608)
Q Consensus 86 hP~-----~~~~~~vvHNG~-I~N~~elr~~l~~~g 115 (608)
+|= .-||..+-=||. |.+-.++.....+.|
T Consensus 142 sPg~~AGi~~GD~I~~iNg~~i~~~~d~~~~i~~~g 177 (423)
T TIGR02860 142 SPGEEAGIQIGDIILKINGEKIKNMEDIAKLINKAG 177 (423)
T ss_pred CCHHHCCEEEEEEEEEECCCHHCCHHHHHHHHHHHH
T ss_conf 636547845610899988811035345688887543
No 348
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=25.33 E-value=39 Score=13.00 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.1
Q ss_pred ECCCCEEEECCCCCEEEECCCCCC
Q ss_conf 749960776089613661376201
Q gi|254780943|r 173 RKGPPLIIGHGEGEMFVGSDVTAL 196 (608)
Q Consensus 173 r~gsPL~iG~~~~~~~vaSd~~al 196 (608)
+.|+||+.-+...++++.|=.++-
T Consensus 52 k~G~pLF~dK~np~i~f~SPvsG~ 75 (257)
T pfam05896 52 KAGQPLFEDKKNPGVKFTAPASGT 75 (257)
T ss_pred ECCCEEEEEECCCCCEEECCCCEE
T ss_conf 558757997369884685678738
No 349
>PRK10637 cysG siroheme synthase; Provisional
Probab=25.29 E-value=39 Score=12.99 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCCCEEEEECCCCC--CHHHHHHHHHHHHCCCCCEEEE---CCHHHCCCCCCCCCCEEEEECCC-CC---C-HHHHHHHH
Q ss_conf 65510352036543--0799999999862566731430---42010012334455505775267-88---1-89999999
Q gi|254780943|r 289 NISGLLVSSCGTSY--LAGLVGKFWFERLARLKVEIDV---SSEFRYRDFVYSSKWASLFISQS-GE---T-ADTLASLR 358 (608)
Q Consensus 289 ~~~~I~~vGcGTSy--~Aal~~~~~~e~~~~i~v~v~~---asEf~y~~~~~~~~tlvI~iSQS-Ge---T-~dti~Al~ 358 (608)
+--+|+|||+|--. .--+-+...+++ -++-++. +.++.. ...++.-.|.+... |. + .+..+.+.
T Consensus 214 ~~g~v~lvgaGpGd~~llT~~a~~~l~~---Advv~~d~lv~~~il~---~~~~~ae~i~vgK~~g~~~~~q~~i~~llv 287 (457)
T PRK10637 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQ---ADVVVYDRLVSDDIMN---LVRRDADRVFVGKRAGYHCVPQEEINQILL 287 (457)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH---CCEEEECCCCCHHHHH---HCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 8977999950899855779999999975---9999982779989996---447898899960678888878999999999
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 9863024424651
Q gi|254780943|r 359 YMRTQGLTIGSLV 371 (608)
Q Consensus 359 ~ak~~g~~tiaIt 371 (608)
..-+.|-+++=+-
T Consensus 288 ~~a~~G~~VvRLk 300 (457)
T PRK10637 288 REAQKGKRVVRLK 300 (457)
T ss_pred HHHHCCCEEEEEE
T ss_conf 9985899799984
No 350
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.23 E-value=39 Score=12.99 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH-HCCCEEEEEECC
Q ss_conf 88999999998-279808999565
Q gi|254780943|r 526 QKTLSNIQEIV-TRGGRVIFITDE 548 (608)
Q Consensus 526 ~k~~s~~~Ei~-arg~~vi~I~~~ 548 (608)
..+.+.++++. ..|-.+++||.+
T Consensus 181 ~~i~~~l~~l~~e~g~TvI~itHd 204 (283)
T PRK13640 181 EQILKLIRKLMKDNNLTIISITHD 204 (283)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 999999999997069899999788
No 351
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=40 Score=12.96 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=39.9
Q ss_pred EEEECCCCC---CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 577526788---189999999986302442465117876310002410136
Q gi|254780943|r 341 SLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPI 388 (608)
Q Consensus 341 vI~iSQSGe---T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~ 388 (608)
|-.|.+-|| ...+-+||+.|.+.|.-.+-|..+..-|.++.-|+.=+.
T Consensus 21 vrlIg~~Geq~Giv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYGKfk 71 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGKFK 71 (176)
T ss_pred EEEECCCCCEECCEEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCHH
T ss_conf 999888996874140999999999759988998689999844862052067
No 352
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.96 E-value=40 Score=12.95 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=19.6
Q ss_pred CHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 201001233445550577526788189999999986302442
Q gi|254780943|r 326 SEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTI 367 (608)
Q Consensus 326 sEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~t 367 (608)
+||.|+..-.....++++++-... .|.-.-++..++.|...
T Consensus 26 TeF~YR~~~~~~a~vlvGi~~~~~-~d~~~l~~~L~~~gy~~ 66 (68)
T cd04885 26 TEFHYRNQGGDEARVLVGIQVPDR-EDLAELKERLEALGYPY 66 (68)
T ss_pred EEEEEEECCCCEEEEEEEEEECCH-HHHHHHHHHHHHCCCCE
T ss_conf 589997069860679999995988-88999999999839970
No 353
>pfam05176 ATP-synt_10 ATP10 protein. ATP 10 is essential for the assembly of a functional mitochondrial ATPase complex.
Probab=24.79 E-value=26 Score=14.19 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.9
Q ss_pred CCCHHHHCCCCEEE
Q ss_conf 46378807987189
Q gi|254780943|r 503 HGPIALITEGTFVI 516 (608)
Q Consensus 503 HGP~ali~~~~~vi 516 (608)
-|-+-|||++.-+=
T Consensus 220 vGYvyLvD~~~rIR 233 (255)
T pfam05176 220 VGYVYLVDHNCRIR 233 (255)
T ss_pred EEEEEEECCCCCEE
T ss_conf 35899987987187
No 354
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.68 E-value=40 Score=12.92 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 89999999982798089995653
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEE 549 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~ 549 (608)
.....+++++.+|..+++||...
T Consensus 134 ~i~~~l~~l~~~~~Tvi~vtH~~ 156 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99999997864898999984799
No 355
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=24.63 E-value=40 Score=12.91 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 4688999999998279808999565
Q gi|254780943|r 524 FFQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 524 ~~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
....+...+++++..|..+++++..
T Consensus 146 ~~~~i~~~l~~l~~~g~tvi~~tH~ 170 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999999999689899999588
No 356
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=24.38 E-value=31 Score=13.67 Aligned_cols=42 Identities=14% Similarity=0.391 Sum_probs=21.4
Q ss_pred ECCCCC-CHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECC
Q ss_conf 036543-079999999986256673143042010---01233445550577526
Q gi|254780943|r 297 SCGTSY-LAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQ 346 (608)
Q Consensus 297 GcGTSy-~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQ 346 (608)
|||||- ||.. .+.. .|++ +++|+-|. |.+. +.-+-|.|.+++
T Consensus 78 GCGSSREhAvw----AL~d-~Gir--~VIA~SFadIF~~Nc-~kNGlLpI~L~~ 123 (201)
T PRK01641 78 GCGSSREHAPW----ALAD-YGFR--VVIAPSFADIFYGNC-FKNGLLPIVLPE 123 (201)
T ss_pred CCCCCHHHHHH----HHHH-CCCC--EEEECHHHHHHHHHH-HHCCCCEEECCH
T ss_conf 77750889999----9998-5998--999725999999889-874976065099
No 357
>KOG3015 consensus
Probab=24.18 E-value=34 Score=13.45 Aligned_cols=18 Identities=50% Similarity=0.564 Sum_probs=13.9
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 742001100078889999
Q gi|254780943|r 389 KAGPEIGVASTKAFTCQL 406 (608)
Q Consensus 389 ~aG~Ei~VasTKsftaql 406 (608)
.+|-|.+|+++|+|...+
T Consensus 208 Lagle~~v~s~KSfVia~ 225 (283)
T KOG3015 208 LAGLEFAVASLKSFVIAL 225 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999
No 358
>TIGR02919 TIGR02919 conserved hypothetical protein TIGR02919; InterPro: IPR014268 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=24.09 E-value=41 Score=12.84 Aligned_cols=128 Identities=17% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCHHHCCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC----------------------CCCCC
Q ss_conf 4201001233--44555057752678818999999998630244246511787----------------------63100
Q gi|254780943|r 325 SSEFRYRDFV--YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLE----------------------STIAR 380 (608)
Q Consensus 325 asEf~y~~~~--~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~----------------------S~la~ 380 (608)
.+=|.|.-.. -..+..+| ++-|=-=.-+=+.++....-.-++.|+|--.. ..|-+
T Consensus 273 ~lGY~Y~~~k~N~~~k~~li-LTNSDQI~~le~iV~~~pd~~FhIAA~TEMS~KLm~l~~Y~NV~LYP~i~~~~i~~Lyq 351 (448)
T TIGR02919 273 QLGYLYPFKKDNKYRKQVLI-LTNSDQIEHLEEIVQALPDYEFHIAALTEMSSKLMSLSKYDNVKLYPNISRQKIQELYQ 351 (448)
T ss_pred ECCCCCCCCCCCCCCCCEEE-ECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 24420368647678876576-03732335799999857897046543501317761578835524376777778988873
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH------HCCCHHHHH-----HHHHHHHHHHH---HHHHHHH
Q ss_conf 02410136742001100078889999999999999-776------212001577-----63227999875---9999999
Q gi|254780943|r 381 ESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIY-AGK------VRGYINEEQ-----ERELIRSLVEI---PRKMFDV 445 (608)
Q Consensus 381 ~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~-l~~------~~g~i~~~~-----~~~~~~~L~~l---p~~i~~~ 445 (608)
.||..++++=|-||.=|==.||-=|+|.|. .. .+. ........+ ..++++-|+.+ +..+++.
T Consensus 352 ~cDIYLDIN~GNEil~AvR~AF~ynlLIlg---f~eT~Hn~~~i~~~N~F~~~~eitme~~~Li~~l~~l~~~~~~~~~~ 428 (448)
T TIGR02919 352 LCDIYLDINHGNEILNAVRRAFEYNLLILG---FEETAHNRDFIASENIFEHNEEITMEVEQLISILKELLNDPNQFREL 428 (448)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHCCCCCEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 142344123457378899887564477777---76213553220601274565412211899999999973186679999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99767744677
Q gi|254780943|r 446 LQNIYSQIEKL 456 (608)
Q Consensus 446 l~~~~~~i~~~ 456 (608)
|.+....+..+
T Consensus 429 L~~Q~~~A~~~ 439 (448)
T TIGR02919 429 LEQQREHANEI 439 (448)
T ss_pred HHHHHHHCCCC
T ss_conf 99999864876
No 359
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=23.77 E-value=38 Score=13.12 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=15.3
Q ss_pred EEEECCCCCCCCCCCEEEECCCCEEE
Q ss_conf 36613762011111037982765188
Q gi|254780943|r 187 MFVGSDVTALTLLTDKVTYMEDGDWA 212 (608)
Q Consensus 187 ~~vaSd~~al~~~t~~~~~L~dgei~ 212 (608)
.|++--..-....++++..|..|..+
T Consensus 194 i~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 194 IFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred EEEECCHHHHHHHHCEEEEEECCEEE
T ss_conf 99935089999763736998577488
No 360
>TIGR01487 SPP-like SPP-like hydrolase, Archaeal; InterPro: IPR006382 This group of Archaeal sequences is most closely related to the sucrose-phosphate phosphatases (SPP) from plants and cyanobacteria. If it should be shown that the proteins in this family possess sucrose-phosphatase activity then SPP would represent a broad family of functionally related proteins..
Probab=23.75 E-value=42 Score=12.80 Aligned_cols=39 Identities=10% Similarity=0.294 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1899999999863024424651178763100024101367
Q gi|254780943|r 350 TADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIK 389 (608)
Q Consensus 350 T~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~ 389 (608)
+.+.+++++.+++.|.+++-+|.+. +++++.+-..|.+.
T Consensus 22 ~~~A~e~iRk~~k~GI~V~LvtGN~-~~f~~al~~~i~~~ 60 (223)
T TIGR01487 22 SLRAIEAIRKAEKKGIKVSLVTGNV-VPFARALAVLIGVS 60 (223)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHCCC
T ss_conf 8889999986752783699980882-79988888750688
No 361
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.73 E-value=42 Score=12.80 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=5.4
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99863024424651
Q gi|254780943|r 358 RYMRTQGLTIGSLV 371 (608)
Q Consensus 358 ~~ak~~g~~tiaIt 371 (608)
+..+.+|++.+.++
T Consensus 114 ~~l~~r~a~sv~i~ 127 (178)
T COG0634 114 DLLKERGAKSVRIA 127 (178)
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99975699768999
No 362
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.56 E-value=42 Score=12.78 Aligned_cols=23 Identities=0% Similarity=-0.117 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999998387798897986
Q gi|254780943|r 580 IQMIAYCTAVLIGTDVDQPRNLA 602 (608)
Q Consensus 580 lQllAy~~A~~~G~dpD~PRnLa 602 (608)
+.-|++.+-...|++...|+.+-
T Consensus 241 ~~~l~~~L~~~~~~~~~~~~t~~ 263 (275)
T PRK13639 241 VAHLIELLNKEDNLGIKMGYTIG 263 (275)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99999999753699888874699
No 363
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=23.47 E-value=42 Score=12.76 Aligned_cols=116 Identities=8% Similarity=0.131 Sum_probs=58.1
Q ss_pred HHHHHHHHHHCHHHHHHHH--HC---CCC-----CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHH---HHHH
Q ss_conf 8999999741789999987--15---747-----664521111000023565510352036543079999999---9862
Q gi|254780943|r 249 RHFMEKEIYEQPEAISRVL--SH---YIN-----LSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFW---FERL 315 (608)
Q Consensus 249 ~hfm~kEI~EQP~~l~~~i--~~---~~~-----~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~---~e~~ 315 (608)
..+-.++|..-++.+++.- ++ |.+ ..+....++..+.-+++..+|.+-|.=...-... -+.. ++++
T Consensus 359 ~~~~~~~~~~c~~~~~k~ATLeF~RdRKSMSV~~~~~~lfvKGAPE~~L~rct~I~~~g~~VPL~~~~-k~~il~~~~~~ 437 (800)
T TIGR01116 359 KSLKSRPILGCNSLWKKKATLEFTRDRKSMSVLVKSNKLFVKGAPEEVLERCTHILLKGSAVPLTEKM-KNTILASIKEM 437 (800)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCHHHHHHHCCEEEECCCCCCCCHHH-HHHHHHHHHHH
T ss_conf 76662024312566640201130565210227881651244477246772335532057013478467-89999999987
Q ss_pred CC--CCCEEEECCHHHCCCCCCCCCCEEEEECCCC----CCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 56--6731430420100123344555057752678----818999999998630244246511787
Q gi|254780943|r 316 AR--LKVEIDVSSEFRYRDFVYSSKWASLFISQSG----ETADTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 316 ~~--i~v~v~~asEf~y~~~~~~~~tlvI~iSQSG----eT~dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
+. ++|- | |.|+ ++|-.+++=-=| ==.|+-+|++.||+.|.+++-||.+--
T Consensus 438 ~~~aLRCL---A--~A~~-----~Es~Ltf~G~vGl~DPPR~EV~~ai~~CR~AGIrVImITGD~K 493 (800)
T TIGR01116 438 SSEALRCL---A--LAFK-----EESKLTFIGVVGLLDPPRPEVADAIEKCREAGIRVIMITGDNK 493 (800)
T ss_pred HHHHHHHH---H--HEEC-----CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 64132411---0--0121-----4678678888506894816899999988737978999847982
No 364
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=23.35 E-value=43 Score=12.75 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCEEEEECCEEC--CHHHHHHHHHHCCC-EEEEC------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 889999768150--68999899997898-89724------------7615678887634320010267799999988751
Q gi|254780943|r 91 EGIAVTHNGIIE--NFSRLKKEHFSSQQ-VFLTE------------TDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 91 ~~~~vvHNG~I~--N~~elr~~l~~~g~-~f~s~------------tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
..++++||-++. =|.|+|.++-.+.. .|.|= |||- |+ + ..++..-+.+++-|
T Consensus 59 PtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAYvp~tDty-----IE----K----dasiNdeId~mR~S 125 (663)
T COG0556 59 PTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTY-----IE----K----DASINDEIDRLRHS 125 (663)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCE-----EE----C----CCCHHHHHHHHHHH
T ss_conf 71998255547999999999768676458886400146851345777735-----75----3----65067899999999
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 222010046872389997
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVAR 173 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar 173 (608)
-.-.++.++ |-|++|.
T Consensus 126 At~sLleR~--DVIVVaS 141 (663)
T COG0556 126 ATRSLLERR--DVIVVAS 141 (663)
T ss_pred HHHHHHCCC--CEEEEEE
T ss_conf 888775047--8699998
No 365
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=23.35 E-value=43 Score=12.75 Aligned_cols=13 Identities=38% Similarity=0.189 Sum_probs=6.5
Q ss_pred CEEEEECCCCCCH
Q ss_conf 5057752678818
Q gi|254780943|r 339 WASLFISQSGETA 351 (608)
Q Consensus 339 tlvI~iSQSGeT~ 351 (608)
..+++-|=||+|+
T Consensus 30 ~aliG~sGsGKST 42 (248)
T PRK11264 30 VAIIGPSGSGKTT 42 (248)
T ss_pred EEEECCCCCCHHH
T ss_conf 9999999980999
No 366
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=23.23 E-value=31 Score=13.73 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 67881899999999863024424651178763100024101
Q gi|254780943|r 346 QSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 346 QSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
-.|-.-+|..=++..|..|+.+++.|..|+-.+||++....
T Consensus 159 ~~GPrfET~AEi~~~r~~GaDvVGMStvPEv~lAre~gi~y 199 (261)
T PRK08666 159 TEGPRFETAAEIRMYRILGGDLVGMTQVPEAVLARELEMCY 199 (261)
T ss_pred EECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCE
T ss_conf 88998897999999998289940477357999998769967
No 367
>TIGR01138 cysM cysteine synthase B; InterPro: IPR005858 Cysteine synthase B (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK (IPR005859 from INTERPRO) in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=23.12 E-value=43 Score=12.72 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCHHH-CCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf 6543079999999986256673143042010-012334--4555057752678818999999998630244--2465117
Q gi|254780943|r 299 GTSYLAGLVGKFWFERLARLKVEIDVSSEFR-YRDFVY--SSKWASLFISQSGETADTLASLRYMRTQGLT--IGSLVNV 373 (608)
Q Consensus 299 GTSy~Aal~~~~~~e~~~~i~v~v~~asEf~-y~~~~~--~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~--tiaItN~ 373 (608)
-||=|.+.+.+. .-.+.|.++...-|.... -+...+ ..-.|++.--..|.---..-+.+..++..-+ .+===|+
T Consensus 68 ATSGNTGIALAM-~aA~~G~~~~L~MP~N~s~ERk~~~~AyGA~L~L~~~~~G~~GA~~l~~~l~~~~~~Kyv~LDQf~N 146 (300)
T TIGR01138 68 ATSGNTGIALAM-VAALKGYKMELLMPDNVSEERKAAMKAYGAELILVDKEEGMEGARDLARELVQKGEGKYVLLDQFNN 146 (300)
T ss_pred CCCCCHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 168867899999-9985594289977877457999999862954898442356156899999999737985699740569
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 876310002410136742001
Q gi|254780943|r 374 LESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 374 ~~S~la~~aD~~i~~~aG~Ei 394 (608)
++.+-|- |...||||
T Consensus 147 p~Np~AH------y~sTG~EI 161 (300)
T TIGR01138 147 PDNPKAH------YYSTGPEI 161 (300)
T ss_pred CCCCCCC------EEECCCHH
T ss_conf 8886455------33168000
No 368
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=23.11 E-value=43 Score=12.72 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999986-3024424651178763100024101367420
Q gi|254780943|r 353 TLASLRYMR-TQGLTIGSLVNVLESTIARESDFIFPIKAGP 392 (608)
Q Consensus 353 ti~Al~~ak-~~g~~tiaItN~~~S~la~~aD~~i~~~aG~ 392 (608)
+++-++..+ +.|...+-||.+.+ ..++.||.+.-|.||.
T Consensus 192 Il~ll~~l~~e~~~siilITHDl~-vva~~aDrv~VMYaG~ 231 (316)
T COG0444 192 ILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGR 231 (316)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCE
T ss_conf 999999999854978999948889-9997456689987758
No 369
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=23.00 E-value=43 Score=12.70 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002410136742001100078889999999-----9-9999977621200157763227999875999999999767744
Q gi|254780943|r 380 RESDFIFPIKAGPEIGVASTKAFTCQLLVL-----V-IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQI 453 (608)
Q Consensus 380 ~~aD~~i~~~aG~Ei~VasTKsftaql~~l-----~-llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i 453 (608)
+.-|..+-++|-+|=+-||| ||+.++.- | -++..++-..|-+..-.-++.++-|..+-+.+... ...+.+
T Consensus 220 ~~l~~~liLHADHEG~N~ST--~t~rvvgStlsd~ysaiaagi~aL~GPLHGGANq~Vl~ml~~i~~~~G~~--~s~e~v 295 (427)
T cd06105 220 ELMRLYLTIHSDHEGGNVSA--HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKD--VSDEQL 295 (427)
T ss_pred HHHHHHHHHHHHHCCCCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCHHHH
T ss_conf 99999999976503787006--78888862587488999998887068765675899999999999971888--878999
Q ss_pred HHHHHHHHCCCCEEEEECC
Q ss_conf 6779874203614552136
Q gi|254780943|r 454 EKLCCGLAKCQTLLYVGRG 472 (608)
Q Consensus 454 ~~~a~~~~~~~~~~~lG~G 472 (608)
+++.++..+.+. .+.|.|
T Consensus 296 ~~~v~~~l~~~~-~imGfG 313 (427)
T cd06105 296 REYVWKTLNSGR-VVPGYG 313 (427)
T ss_pred HHHHHHHHCCCC-CCCCCC
T ss_conf 999998654698-424788
No 370
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=22.90 E-value=43 Score=12.69 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=74.1
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCEEEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-----CCCCCCC
Q ss_conf 56673143042010012334455505775----26788189999999986302442465117876310-----0024101
Q gi|254780943|r 316 ARLKVEIDVSSEFRYRDFVYSSKWASLFI----SQSGETADTLASLRYMRTQGLTIGSLVNVLESTIA-----RESDFIF 386 (608)
Q Consensus 316 ~~i~v~v~~asEf~y~~~~~~~~tlvI~i----SQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la-----~~aD~~i 386 (608)
.||.+....+.+.......+.++|-+|.+ +-..+-.|.-...+.|+++|+.++ |=|+-.+|+- --+|.++
T Consensus 128 ~Gi~~~~vd~~d~~~~~~ai~~~Tklv~~EspsNP~l~v~Di~~ia~iA~~~g~~~v-VDNTfatP~~~~Pl~~GaDiVv 206 (397)
T PRK07504 128 YGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAEIANQAGAKLV-VDNVFATPLFQKPLELGAHIVV 206 (397)
T ss_pred CCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCEECCCHHHHHHHHHCCCEEE-EECCCCCCCCCCHHHHCCCEEE
T ss_conf 785899878988588997458775399985489997451371999999998299599-7366221112684562888799
Q ss_pred CCC----CCCC---CCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 367----4200---110-00788899999999999997762120015776322799987599999999976774467798
Q gi|254780943|r 387 PIK----AGPE---IGV-ASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCC 458 (608)
Q Consensus 387 ~~~----aG~E---i~V-asTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~ 458 (608)
.-. +|.- -|| +..+.|..+.+..++ ..+| ..++..+..-.++.|+.++--+++- .+...++|+
T Consensus 207 hS~TKyi~GHsDvlgGvv~~~~~~~~~~~~~~~--~~~G---~~~~p~~a~l~lRGL~TL~lRm~r~----~~nA~~iA~ 277 (397)
T PRK07504 207 YSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF--RHTG---PSLSPFNAWVLLKGLETLAVRVRQQ----TESAAAIAD 277 (397)
T ss_pred EECCCCCCCCCCEEEEEEECCHHHHHHHHHHHH--HHCC---CCCCHHHHHHHHCCCCCHHHHHHHH----HHHHHHHHH
T ss_conf 742521258876254699555899999999999--9718---8788378899871677299999999----999999999
Q ss_pred HHHCCC---CEEEEE
Q ss_conf 742036---145521
Q gi|254780943|r 459 GLAKCQ---TLLYVG 470 (608)
Q Consensus 459 ~~~~~~---~~~~lG 470 (608)
+|.... .+++-|
T Consensus 278 ~L~~hp~V~~V~yPg 292 (397)
T PRK07504 278 FLAGHPKVARVIYPG 292 (397)
T ss_pred HHHHCCCCCEEECCC
T ss_conf 997389955797989
No 371
>pfam08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal. This domain is found to the C-terminus of pfam02670 domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases which catalyse the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
Probab=22.80 E-value=22 Score=14.72 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=13.2
Q ss_pred CCCCCCEEEEECCCCCCH
Q ss_conf 356551035203654307
Q gi|254780943|r 287 FANISGLLVSSCGTSYLA 304 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~A 304 (608)
..++++|+++|+|..+.-
T Consensus 20 ~~~I~kI~LTASGGPF~~ 37 (84)
T pfam08436 20 KKEVEKLILTASGGPFRD 37 (84)
T ss_pred HHHEEEEEEECCCHHHHH
T ss_conf 512007999756742650
No 372
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family; InterPro: IPR011268 This entry describes a subset of the phosphorylase family. The entry excludes the methylthioadenosine phosphorylases (MTAP, IPR010044 from INTERPRO), which are believed to play a specific role in the recycling of methionine from methylthioadenosine. This entry consists of three clades of purine phosphorylases based on a neighbour-joining tree using the MTAP family as an out group. The highest-branching clade (IPR011269 from INTERPRO) consists of a group of sequences from both Gram-positive and Gram-negative bacteria which have been shown to act as purine nucleotide phosphorylases but whose physiological substrate and role in vivo remain unknown . Of the two remaining clades, one is xanthosine phosphorylase (XAPA, IPR010943 from INTERPRO); it is limited to certain gammaproteobacteria and constitutes a special purine phosphorylase found in a specialised operon for xanthosine catabolism . The enzyme also acts on the same purines (inosine and guanosine) as the other characterised members of this subfamily, but is only induced when xanthosine must be degraded. The remaining and largest clade consists of purine nucleotide phosphorylases (PNPH, IPR011270 from INTERPRO) from metazoa and bacteria which act primarily on guanosine and inosine, and do not act on adenosine. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterised with respect to substrate range. ; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=22.75 E-value=44 Score=12.67 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHCCC--CCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC--
Q ss_conf 430799999999862566--7314304201001233445550577526788189999999986302442465117876--
Q gi|254780943|r 301 SYLAGLVGKFWFERLARL--KVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLES-- 376 (608)
Q Consensus 301 Sy~Aal~~~~~~e~~~~i--~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S-- 376 (608)
|--.|-.++-+|-++.+. ||-+ .+--|+||+-..+..+. -..+|.+|..|++++-+||--||
T Consensus 38 s~V~GH~G~Lv~G~Lgg~rvpV~~-m~GRfH~YEGn~d~~~v-------------t~PvR~mk~lGv~~lvvTNAAGg~n 103 (266)
T TIGR01697 38 STVVGHAGELVFGRLGGKRVPVVV-MQGRFHYYEGNYDMAAV-------------TFPVRVMKLLGVEILVVTNAAGGLN 103 (266)
T ss_pred CCCCCCCCCEEEEEECCEEEEEEE-EECCCCCCCCCCCHHHH-------------HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 784342210577766571146888-50772356789666677-------------6899999866920899974661206
Q ss_pred ------CCCCCCCCCCCCC
Q ss_conf ------3100024101367
Q gi|254780943|r 377 ------TIARESDFIFPIK 389 (608)
Q Consensus 377 ------~la~~aD~~i~~~ 389 (608)
.|...+|+.-++.
T Consensus 104 ~~~~~GdLm~i~DHIN~~~ 122 (266)
T TIGR01697 104 ADFKPGDLMIIKDHINLPG 122 (266)
T ss_pred CCCCCCCEEEEECHHHCCC
T ss_conf 7889853799711211440
No 373
>PRK06186 hypothetical protein; Validated
Probab=22.74 E-value=44 Score=12.67 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 1899999999863024424651178
Q gi|254780943|r 350 TADTLASLRYMRTQGLTIGSLVNVL 374 (608)
Q Consensus 350 T~dti~Al~~ak~~g~~tiaItN~~ 374 (608)
+.--+.|+++||+.+.+.+|||--.
T Consensus 68 ~eGki~Ai~yARen~iP~LGICLGm 92 (229)
T PRK06186 68 EDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred HHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf 6389999999987699878642778
No 374
>KOG2947 consensus
Probab=22.54 E-value=44 Score=12.64 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=6.5
Q ss_pred EEEEECCCCCCHHHH
Q ss_conf 035203654307999
Q gi|254780943|r 293 LLVSSCGTSYLAGLV 307 (608)
Q Consensus 293 I~~vGcGTSy~Aal~ 307 (608)
|-.+|.|.+++|+.+
T Consensus 254 VD~lg~~DtF~A~vI 268 (308)
T KOG2947 254 VDTLGAGDTFNAGVI 268 (308)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 123047771017889
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=44 Score=12.64 Aligned_cols=27 Identities=19% Similarity=0.505 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 146889999999982798089995653
Q gi|254780943|r 523 RFFQKTLSNIQEIVTRGGRVIFITDEE 549 (608)
Q Consensus 523 ~~~~k~~s~~~Ei~arg~~vi~I~~~~ 549 (608)
...+|-...++|.+..+..++.++...
T Consensus 181 ~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 181 AFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 999999999999997598799997887
No 376
>PRK06062 hypothetical protein; Provisional
Probab=22.28 E-value=31 Score=13.68 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=13.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 775267881899999999863024-424651
Q gi|254780943|r 342 LFISQSGETADTLASLRYMRTQGL-TIGSLV 371 (608)
Q Consensus 342 I~iSQSGeT~dti~Al~~ak~~g~-~tiaIt 371 (608)
.+..+.|-++|.+-.-|-. ..|. +.-++.
T Consensus 250 fa~e~~gv~PDiv~~gK~l-~gG~~Plsav~ 279 (434)
T PRK06062 250 FAIEHFDVVPDLITFAKGV-NSGYVPLGGVA 279 (434)
T ss_pred CCCCCCCCCCCHHEEHHHH-CCCCCCEEEEE
T ss_conf 2100589797621010331-48877617887
No 377
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=22.25 E-value=45 Score=12.60 Aligned_cols=28 Identities=36% Similarity=0.707 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 51035203654307999999998625667314
Q gi|254780943|r 291 SGLLVSSCGTSYLAGLVGKFWFERLARLKVEI 322 (608)
Q Consensus 291 ~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v 322 (608)
..+.++|.|.| +|.+.||+-+ .++.|-+
T Consensus 31 sDViIVGaGPs---GLtAAyyLAk-~g~kV~i 58 (262)
T COG1635 31 SDVIIVGAGPS---GLTAAYYLAK-AGLKVAI 58 (262)
T ss_pred CCEEEECCCCC---HHHHHHHHHH-CCCEEEE
T ss_conf 26799876850---5789999986-7964999
No 378
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.04 E-value=45 Score=12.57 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=18.7
Q ss_pred CCEEEEECCEECCHH----HHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 889999768150689----998999978988972476156788
Q gi|254780943|r 91 EGIAVTHNGIIENFS----RLKKEHFSSQQVFLTETDTEVIAC 129 (608)
Q Consensus 91 ~~~~vvHNG~I~N~~----elr~~l~~~g~~f~s~tDsEvi~~ 129 (608)
-+..|+-=|+=.++. .++ ...+.|....| |.|..+.
T Consensus 66 ~~~iV~SPGIp~~~p~~~~~v~-~a~~~gi~v~s--eielf~~ 105 (457)
T PRK01390 66 FAALVLSPGVPLTHPKPHWTVD-LARAAGVEVIG--DIELFCR 105 (457)
T ss_pred CCEEEECCCCCCCCCCCHHHHH-HHHHCCCEEEE--HHHHHHH
T ss_conf 8789999988865667319999-99985991860--0899999
No 379
>pfam08981 consensus
Probab=21.96 E-value=45 Score=12.56 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=12.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 526788189999999986302442465117
Q gi|254780943|r 344 ISQSGETADTLASLRYMRTQGLTIGSLVNV 373 (608)
Q Consensus 344 iSQSGeT~dti~Al~~ak~~g~~tiaItN~ 373 (608)
-|-||+|+. .+++..+..+...+.+|..
T Consensus 32 ASssG~TA~--k~~e~~~~~~~~lvvVth~ 59 (181)
T pfam08981 32 ASSSGETAL--KAAEALEGTNLNVVVVTHH 59 (181)
T ss_pred EECCCHHHH--HHHHHHCCCCCEEEEEECC
T ss_conf 807877999--9998713589559999464
No 380
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.91 E-value=45 Score=12.56 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 688999999998279808999565
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
...+...+++++..|-.+++||.+
T Consensus 188 ~~~i~~ll~~l~~~g~tii~vtHd 211 (257)
T PRK10619 188 VGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999999999759999999489
No 381
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.91 E-value=39 Score=13.05 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=7.2
Q ss_pred HHHHHHHHCCC--CEEEEECC
Q ss_conf 99999863024--42465117
Q gi|254780943|r 355 ASLRYMRTQGL--TIGSLVNV 373 (608)
Q Consensus 355 ~Al~~ak~~g~--~tiaItN~ 373 (608)
+-++..++.++ +++.+.+.
T Consensus 114 ef~~~~~~~~~l~~tv~v~~t 134 (274)
T cd01132 114 QVVKTLEEHGAMEYTIVVAAT 134 (274)
T ss_pred HHHHHHHHCCCCCCCEEEECC
T ss_conf 999987605762011477404
No 382
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952 Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. 2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=21.87 E-value=35 Score=13.39 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=53.8
Q ss_pred EEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCH-HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 97305741003332221000110001210000140-78999999741789999987157476645211110000235655
Q gi|254780943|r 213 IIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGN-YRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANIS 291 (608)
Q Consensus 213 ~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~-y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 291 (608)
.-..+.|.+|..+-..-.++...-+.....+.+++ |.|--.+|+=.. |+|++|+.+.+..=+..+.+ .+++=+
T Consensus 103 KYGeeQV~~WRRSfDv~PPpld~~d~~~psi~~D~RYa~~~~~~lP~t-EsLk~T~~RvlPYW~d~I~p-----~l~~GK 176 (248)
T TIGR01258 103 KYGEEQVKIWRRSFDVPPPPLDEKDPRSPSIGKDPRYAGLDPKVLPLT-ESLKDTVARVLPYWNDEIAP-----ELKSGK 176 (248)
T ss_pred HHCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCHHHEEHH-----HHHCCC
T ss_conf 606010301221357851789888776765567831005774357755-57788996506531111013-----544689
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1035203654307999999998625
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERLA 316 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~~ 316 (608)
+|+|+|.|=|.=|= +| +|+.+.
T Consensus 177 ~VLI~AHGNSLRAL--vK-hL~~~S 198 (248)
T TIGR01258 177 RVLIAAHGNSLRAL--VK-HLEGIS 198 (248)
T ss_pred EEEEEECCHHHHHH--HH-HHHCCC
T ss_conf 79998228048999--99-861279
No 383
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=21.83 E-value=35 Score=13.36 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHH--CCCCCEEEECCHHHCCCCCCCCCCE--EEEECCCCCCHHHHHHH-HHHHH------CCCCE
Q ss_conf 799999999862--5667314304201001233445550--57752678818999999-99863------02442
Q gi|254780943|r 304 AGLVGKFWFERL--ARLKVEIDVSSEFRYRDFVYSSKWA--SLFISQSGETADTLASL-RYMRT------QGLTI 367 (608)
Q Consensus 304 Aal~~~~~~e~~--~~i~v~v~~asEf~y~~~~~~~~tl--vI~iSQSGeT~dti~Al-~~ak~------~g~~t 367 (608)
||++=+|..|++ .+.|-=...|+| +.| .|||++ +| ..|.| |.||+ +|=+|
T Consensus 8 A~fAEeYIveSIWn~~FPPGSiLPAE----------RELsElIGVTR--TT--LREVLQRLARDGWLTIQHGKPT 68 (275)
T TIGR02812 8 AGFAEEYIVESIWNNRFPPGSILPAE----------RELSELIGVTR--TT--LREVLQRLARDGWLTIQHGKPT 68 (275)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHH----------HHHHHHCCCCC--CH--HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 42354433221016434658987246----------65754237663--03--7899988764113436588998
No 384
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=21.75 E-value=46 Score=12.54 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCEEEECCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 61366137620111110379827651889
Q gi|254780943|r 185 GEMFVGSDVTALTLLTDKVTYMEDGDWAI 213 (608)
Q Consensus 185 ~~~~vaSd~~al~~~t~~~~~L~dgei~~ 213 (608)
.-.+++-|..-+..++++++.|+||.++.
T Consensus 193 til~isH~l~~~~~~~drv~vl~~G~iv~ 221 (501)
T PRK10762 193 GIVYISHRMKEIFEICDDVTVLRDGQFIG 221 (501)
T ss_pred CEEEECCCHHHHHHCCCCCEEECCCEEEE
T ss_conf 14775142576642146411312781897
No 385
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.63 E-value=46 Score=12.52 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 688999999998279808999565
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
.+.+...+++++..|..+++++.+
T Consensus 173 ~~~i~~~l~~l~~~g~tii~vsH~ 196 (237)
T PRK11614 173 IQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999999679999999475
No 386
>TIGR00110 ilvD dihydroxy-acid dehydratase; InterPro: IPR004404 Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster . This family represents dihydroxy-acid dehydratase (DAD). It contains a catalytically essential [4Fe-4S] cluster and catalyses the fourth step in valine and isoleucine biosynthesis.; GO: 0004160 dihydroxy-acid dehydratase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=21.43 E-value=29 Score=13.90 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEE-E--------CCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEE
Q ss_conf 8875122201004687238999-7--------499607760896136613762011111037982765188973057410
Q gi|254780943|r 151 CLTGSYSIAVIFEDDPHSIIVA-R--------KGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTI 221 (608)
Q Consensus 151 ~l~G~ya~~il~~~~p~~i~~a-r--------~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i 221 (608)
.++|.-++.==|+..|+-|.++ | .|=|+.-|+...+.---|+...+.+--+-+....+|+|-.=..+.++-
T Consensus 96 ~~Dg~v~Ip~CDKi~PGmlMAa~RlNiP~I~V~GGPm~pG~~~~Gsskig~~~~~~s~fea~G~~~agk~~e~~l~~~E~ 175 (601)
T TIGR00110 96 RFDGLVCIPSCDKITPGMLMAALRLNIPSIFVTGGPMLPGRTKLGSSKIGEKIDLVSVFEAVGEYAAGKISEEELEEIER 175 (601)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 16937981568973379999999718988997288787663236621015410154440201111278858889999986
Q ss_pred ------------CCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHHCH-HHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf ------------033322210001100012100001407899999974178-9999987157476645211110000235
Q gi|254780943|r 222 ------------YDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEKEIYEQP-EAISRVLSHYINLSDHTIIPNIFNYDFA 288 (608)
Q Consensus 222 ------------~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~kEI~EQP-~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 288 (608)
|+.|--..--+.-=+++.-.....- .|==-++|.++- +.|.++++.++..++..+++.-.- ..+
T Consensus 176 ~ACPg~GSC~GmFTANtM~cLtEaLGLSLP~~~t~~A--~~~ek~~~~~~sG~~ive~~~~~i~q~D~s~LP~~I~-t~~ 252 (601)
T TIGR00110 176 SACPGCGSCSGMFTANTMACLTEALGLSLPGCSTSLA--TSAEKKEIAKKSGKRIVELVKKNIKQDDESVLPRDIL-TKE 252 (601)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHC-CHH
T ss_conf 0686787554122787899999997521545645368--6878999999988999999997300141002641102-577
Q ss_pred CCCC--EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEECCHHHCCCCCC-----CCCCE-EEEECCCCCCHHHHHHHHH
Q ss_conf 6551--0352036543079999999986256-673143042010012334-----45550-5775267881899999999
Q gi|254780943|r 289 NISG--LLVSSCGTSYLAGLVGKFWFERLAR-LKVEIDVSSEFRYRDFVY-----SSKWA-SLFISQSGETADTLASLRY 359 (608)
Q Consensus 289 ~~~~--I~~vGcGTSy~Aal~~~~~~e~~~~-i~v~v~~asEf~y~~~~~-----~~~tl-vI~iSQSGeT~dti~Al~~ 359 (608)
-++| .+.++.|-|=|+-|=.--.-++ ++ ++.+.+.=-|...+-|.+ ..+.. ++=+-++|-...++.-|..
T Consensus 253 AFENAi~~d~A~GGSTNTVLHllAiA~e-ag~v~~~lddfd~~s~~vP~l~~~~P~g~~~H~~DLh~AGGi~~vlk~L~~ 331 (601)
T TIGR00110 253 AFENAITLDMALGGSTNTVLHLLAIANE-AGGVDLSLDDFDELSRKVPHLASLAPAGKYVHMEDLHRAGGIPAVLKELDR 331 (601)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7889999999717960689999999610-687021765798873018736887689853789862012888899999985
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCCCCCHHHHHH
Q ss_conf 8630244246511787631000241013-----------6742001100078889
Q gi|254780943|r 360 MRTQGLTIGSLVNVLESTIARESDFIFP-----------IKAGPEIGVASTKAFT 403 (608)
Q Consensus 360 ak~~g~~tiaItN~~~S~la~~aD~~i~-----------~~aG~Ei~VasTKsft 403 (608)
..--.--++.| .|.||....+.+-. .+|||- |+-.|++|+
T Consensus 332 ~~~lh~~~~TV---tG~Tl~E~~~~~~~~~~qD~~~~~~FRaGPa-GiRttqaFs 382 (601)
T TIGR00110 332 EGLLHKDALTV---TGKTLGEIIEQAKVIPPQDEELKKFFRAGPA-GIRTTQAFS 382 (601)
T ss_pred CCCCCCCCEEE---CCCCHHHHHHCCCCCCCHHHHHHHHHHCCCC-CCHHHHHHH
T ss_conf 35000463031---3772888885155668715899998504875-310111211
No 387
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=21.35 E-value=47 Score=12.48 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44246511787631000241013674200
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPE 393 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~E 393 (608)
-.+|.+...++ .-++.+|.+||.-+=-|
T Consensus 462 ~~vVv~D~~~t-~Ta~~ADivLPa~~~~E 489 (765)
T COG0243 462 EFVVVIDIFMT-ETAKYADIVLPATTFLE 489 (765)
T ss_pred CEEEEEECCCC-CHHHHHHEECCCCCCCC
T ss_conf 83999957878-32776423267776534
No 388
>pfam06718 DUF1203 Protein of unknown function (DUF1203). This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=21.17 E-value=47 Score=12.46 Aligned_cols=45 Identities=29% Similarity=0.567 Sum_probs=19.7
Q ss_pred CCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 15874348999958929999458658998875210347865446510454388
Q gi|254780943|r 26 YRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATHG 78 (608)
Q Consensus 26 ~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~G 78 (608)
-||||+.|.-+ ++.+. -. +.+....+.+..+ ..++.-|+|.|.+|
T Consensus 64 lR~Y~a~~~iv--~g~v~--~~-~~~~~~~~~~~a~---p~Va~Vhvr~a~~g 108 (116)
T pfam06718 64 LRGYNADGRIV--TGRLV--PG-GDLEAAAEELLAR---PDVAYVHVRSARNG 108 (116)
T ss_pred EEEECCCCCEE--EEEEE--CC-CCHHHHHHHHHCC---CCEEEEEEECCCCC
T ss_conf 87107788777--41475--17-4488999998669---77028996215788
No 389
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=21.12 E-value=47 Score=12.45 Aligned_cols=83 Identities=8% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHHHH-CCCCCEEE----ECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 9999999862-56673143----042010012334455505775267881899999999863024424651178763100
Q gi|254780943|r 306 LVGKFWFERL-ARLKVEID----VSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIAR 380 (608)
Q Consensus 306 l~~~~~~e~~-~~i~v~v~----~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~ 380 (608)
...--.+.++ +.+|.+|. .+.+| -+.+...+.-.|.+= -=-|..+.+.+++.|+.|++- +|+=+|+.|+.-
T Consensus 46 p~v~~~~r~~g~~~P~DVHLMv~~pd~~--~~~Fa~aGA~~I~vH-~Ea~~h~~R~l~~Ik~~G~~A-G~v~NP~TPl~~ 121 (216)
T TIGR01163 46 PPVLEALRKYGTKLPIDVHLMVENPDRY--IEDFAEAGADIITVH-AEATEHIHRLLQLIKELGAKA-GIVLNPATPLEA 121 (216)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHH--HHHHHHHCCCEEEEE-CCCCCCHHHHHHHHHHCCCCE-EEEECCCCCHHH
T ss_conf 7899988740795212663035785777--889997089989984-377626799999999718970-688679999878
Q ss_pred ------CCCCCCCCCCCC
Q ss_conf ------024101367420
Q gi|254780943|r 381 ------ESDFIFPIKAGP 392 (608)
Q Consensus 381 ------~aD~~i~~~aG~ 392 (608)
.+|.+|.|..-|
T Consensus 122 ~~~~L~~~D~VLlMSVnP 139 (216)
T TIGR01163 122 LEYVLEDVDLVLLMSVNP 139 (216)
T ss_pred HHHHHHHCCEEEEEEEEC
T ss_conf 998987629899887607
No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.09 E-value=47 Score=12.44 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 688999999998279808999565
Q gi|254780943|r 525 FQKTLSNIQEIVTRGGRVIFITDE 548 (608)
Q Consensus 525 ~~k~~s~~~Ei~arg~~vi~I~~~ 548 (608)
.......+.+++.+|..++.++.+
T Consensus 140 ~~~i~~~i~~l~~~g~tvi~isHd 163 (182)
T cd03215 140 KAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999999789999999687
No 391
>KOG0685 consensus
Probab=21.05 E-value=47 Score=12.44 Aligned_cols=10 Identities=30% Similarity=0.102 Sum_probs=6.2
Q ss_pred CCEEEEEECC
Q ss_conf 8718999448
Q gi|254780943|r 512 GTFVIAIAPY 521 (608)
Q Consensus 512 ~~~vi~i~~~ 521 (608)
+-|.|+++..
T Consensus 454 ~~p~I~FAGE 463 (498)
T KOG0685 454 GRPQILFAGE 463 (498)
T ss_pred CCCEEEECCC
T ss_conf 8706997444
No 392
>TIGR00105 L31 ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=21.02 E-value=47 Score=12.44 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=11.3
Q ss_pred CCCCEEECCEEEE-ECCEEC
Q ss_conf 2675023889999-768150
Q gi|254780943|r 84 NSHPHCIEGIAVT-HNGIIE 102 (608)
Q Consensus 84 NahP~~~~~~~vv-HNG~I~ 102 (608)
++|||+.|..-++ =.|=++
T Consensus 42 ~CHPFYtG~~~~~~t~GRVe 61 (77)
T TIGR00105 42 KCHPFYTGKQKIVDTGGRVE 61 (77)
T ss_pred CCCCCEECCEEEEECCCCHH
T ss_conf 98894204403674266413
No 393
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain . The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=20.90 E-value=35 Score=13.36 Aligned_cols=30 Identities=17% Similarity=0.449 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHCCCC-----CEEEECCHHHCC
Q ss_conf 4307999999998625667-----314304201001
Q gi|254780943|r 301 SYLAGLVGKFWFERLARLK-----VEIDVSSEFRYR 331 (608)
Q Consensus 301 Sy~Aal~~~~~~e~~~~i~-----v~v~~asEf~y~ 331 (608)
.||-|++.+.++ +..+|+ -.-+.++|..||
T Consensus 302 ~YFia~~~~FL~-~igkI~~dklRFrqH~~~E~AHY 336 (606)
T TIGR00389 302 AYFIALVKRFLL-EIGKINPDKLRFRQHLKNEMAHY 336 (606)
T ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999998-65278878852331360045565
No 394
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=20.84 E-value=48 Score=12.41 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=87.0
Q ss_pred EECCCCCCHHH-HHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCEEEEE-C---CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 20365430799-99999986256673143042010012334455505775-2---6788189999999986302442465
Q gi|254780943|r 296 SSCGTSYLAGL-VGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFI-S---QSGETADTLASLRYMRTQGLTIGSL 370 (608)
Q Consensus 296 vGcGTSy~Aal-~~~~~~e~~~~i~v~v~~asEf~y~~~~~~~~tlvI~i-S---QSGeT~dti~Al~~ak~~g~~tiaI 370 (608)
+.....|.... ..+.++.++ ||.+.-..+.+.......+.++|-+|.+ | -..+-.|.-...+.|+++|+.++ +
T Consensus 92 v~~~~~Yg~t~~~~~~~l~~~-GI~~~~vd~~d~~~~~~~i~~~Tklv~~EspsNP~l~v~Di~~ia~ia~~~gi~~v-v 169 (379)
T PRK06176 92 LLGDDVYGGTFRLFDKVLVKN-GLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTI-V 169 (379)
T ss_pred EEECCCCCCHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEE-E
T ss_conf 981898887767459876447-84999867867688996568774599997799987601585899999997698799-7
Q ss_pred ECCCCCCCCC-----CCCCCCCCC----CCCC---CCCCHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 1178763100-----024101367----4200---110007-88899999999999997762120015776322799987
Q gi|254780943|r 371 VNVLESTIAR-----ESDFIFPIK----AGPE---IGVAST-KAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVE 437 (608)
Q Consensus 371 tN~~~S~la~-----~aD~~i~~~----aG~E---i~VasT-Ksftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~ 437 (608)
=|+-.+|+-. -+|.++.-. .|.- -|+..+ +....+.+..+. ..+| ..++..+..-+.+.|+.
T Consensus 170 DNT~atP~~~~Pl~~GaDiVihS~TKyi~GhsD~l~G~vv~~~~~~~~~~~~~~--~~~G---~~l~p~~a~ll~rGL~T 244 (379)
T PRK06176 170 DNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ--NAIG---GVLGPQDSWLLQRGIKT 244 (379)
T ss_pred ECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHH--HHCC---CCCCHHHHHHHHHCCCC
T ss_conf 367215133262341898899954501147877402388349689999999999--7507---77784678999722252
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEE--ECCCCHHHHH
Q ss_conf 599999999976774467798742036---14552--1366449999
Q gi|254780943|r 438 IPRKMFDVLQNIYSQIEKLCCGLAKCQ---TLLYV--GRGSSYPLAL 479 (608)
Q Consensus 438 lp~~i~~~l~~~~~~i~~~a~~~~~~~---~~~~l--G~G~~y~~A~ 479 (608)
++-.+++.- +...++|++|...+ .+++= -..+++.+|.
T Consensus 245 L~lR~~~~~----~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~la~ 287 (379)
T PRK06176 245 LGLRMEAHQ----KNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAK 287 (379)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHH
T ss_conf 899999999----9999999998719982679898999994399999
No 395
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=20.80 E-value=45 Score=12.56 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0267799999988
Q gi|254780943|r 140 SKKETMQKLMQCL 152 (608)
Q Consensus 140 ~~~~ai~~~~~~l 152 (608)
|+.++...+.++|
T Consensus 261 ~p~~~y~~l~~EL 273 (296)
T TIGR02729 261 DPIEDYETLRNEL 273 (296)
T ss_pred CHHHHHHHHHHHH
T ss_conf 8899999999999
No 396
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=20.73 E-value=48 Score=12.39 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=5.1
Q ss_pred CEEEEEECCC
Q ss_conf 9299994586
Q gi|254780943|r 40 GKIQCVRAQG 49 (608)
Q Consensus 40 ~~i~~~K~~g 49 (608)
|.|...+..|
T Consensus 44 G~I~T~~~~g 53 (466)
T PRK12416 44 GKIHSVEEKD 53 (466)
T ss_pred CEEEEEEECC
T ss_conf 7798997399
No 397
>PRK10372 L-ascorbate-specific enzyme IIA component of PTS; Provisional
Probab=20.72 E-value=43 Score=12.71 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 467798742036145521366449999
Q gi|254780943|r 453 IEKLCCGLAKCQTLLYVGRGSSYPLAL 479 (608)
Q Consensus 453 i~~~a~~~~~~~~~~~lG~G~~y~~A~ 479 (608)
++.+-+........+++|-|...|=|.
T Consensus 44 i~ami~~~~~~GpY~vi~~giAiPHa~ 70 (154)
T PRK10372 44 YQAILDGVEQFGPYFVIAPGLAMPHGR 70 (154)
T ss_pred HHHHHHHHHHHCCEEEEECCEEECCCC
T ss_conf 999999998639839971787703477
No 398
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=48 Score=12.39 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHCCCE---EE-ECCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH------HHHHHHHHCCCCCCEEEE
Q ss_conf 689998999978988---97-2476156788876343200-102677999999887------512220100468723899
Q gi|254780943|r 103 NFSRLKKEHFSSQQV---FL-TETDTEVIACLLEKFIKNG-SSKKETMQKLMQCLT------GSYSIAVIFEDDPHSIIV 171 (608)
Q Consensus 103 N~~elr~~l~~~g~~---f~-s~tDsEvi~~li~~~~~~~-~~~~~ai~~~~~~l~------G~ya~~il~~~~p~~i~~ 171 (608)
|+.++|+-+ .|.. |. |.-|.=-+...++..++++ .++..+...+.+.++ -.=+.++. -+|+.++.
T Consensus 34 narKvRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~Dk~lr~LEAmllV--ad~~~~l~ 109 (178)
T COG5405 34 NARKVRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTDKYLRKLEAMLLV--ADKTHILI 109 (178)
T ss_pred CHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE--ECCCCEEE
T ss_conf 489898760--78388874354016999999999999875680899999998756101588886624478--67885899
Q ss_pred EE-CCC---C--EEEECCCCCEEEECCCCCCCCCCCEEEECCC-----------CEEEEEECCCCEE
Q ss_conf 97-499---6--0776089613661376201111103798276-----------5188973057410
Q gi|254780943|r 172 AR-KGP---P--LIIGHGEGEMFVGSDVTALTLLTDKVTYMED-----------GDWAIIRNSGLTI 221 (608)
Q Consensus 172 ar-~gs---P--L~iG~~~~~~~vaSd~~al~~~t~~~~~L~d-----------gei~~i~~~~~~i 221 (608)
.. +|- | =+++.|.+++|.=|-..||.++++ |.. +||++.+++.+.+
T Consensus 110 isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~----lsA~eIa~~sl~iA~eiciyTN~ni~v 172 (178)
T COG5405 110 ITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTE----LSAREIAEKSLKIAGDICIYTNHNIVV 172 (178)
T ss_pred EECCCCEECCCCCEEEECCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHEEEEECCCCEEE
T ss_conf 952762565788868872783389999999986369----999999999986553188853995799
No 399
>PRK04296 thymidine kinase; Provisional
Probab=20.62 E-value=48 Score=12.38 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=39.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50577526788189999999986302442465117876310002410136742001
Q gi|254780943|r 339 WASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEI 394 (608)
Q Consensus 339 tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei 394 (608)
.+.++.--||.|++.++.++..+.+|-+++.+.-..+ .|..+..+-.+.|-++
T Consensus 5 ~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D---~Ry~~~~I~Sh~g~~~ 57 (197)
T PRK04296 5 YFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAID---DRYGEGKVVSRIGLSR 57 (197)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCCEECCCCCEE
T ss_conf 9999342788899999999999987995999985344---6577785786789834
No 400
>KOG0294 consensus
Probab=20.52 E-value=48 Score=12.36 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCCCCCEEEECCCCE-EEEEECCCCEECCCCCCCCC
Q ss_conf 111110379827651-88973057410033322210
Q gi|254780943|r 196 LTLLTDKVTYMEDGD-WAIIRNSGLTIYDSQGYEIE 230 (608)
Q Consensus 196 l~~~t~~~~~L~dge-i~~i~~~~~~i~~~~~~~~~ 230 (608)
|..+...+..++.|| ++++..+++.+|......+-
T Consensus 167 L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~ 202 (362)
T KOG0294 167 LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF 202 (362)
T ss_pred CCCCCEEEEECCCCCEEEEEECCEEEEEECCCHHHH
T ss_conf 577520568747898799983145668960626676
No 401
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=20.52 E-value=48 Score=12.36 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=9.8
Q ss_pred HHHHHHHHHH-HHCCCEEEEEECC
Q ss_conf 8899999999-8279808999565
Q gi|254780943|r 526 QKTLSNIQEI-VTRGGRVIFITDE 548 (608)
Q Consensus 526 ~k~~s~~~Ei-~arg~~vi~I~~~ 548 (608)
.+++..++++ +.+|-.+++||.+
T Consensus 177 ~~il~ll~~l~~~~g~tii~vTHD 200 (254)
T PRK10418 177 ARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 999999999999709979999699
No 402
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=20.30 E-value=49 Score=12.33 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEECCHHHCCCCC
Q ss_conf 7417899999871574766452111100002356551035203654307999999998625667-314304201001233
Q gi|254780943|r 256 IYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLK-VEIDVSSEFRYRDFV 334 (608)
Q Consensus 256 I~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~-v~v~~asEf~y~~~~ 334 (608)
+=|-++.+.++|++- -..+|..++ =|+.|-||--+-.-+.. .||+ -+++.|.-+.-
T Consensus 253 VGEp~~~m~~il~~~-----~PLlP~dKP--------RYLMGvG~p~~l~~ai~------~GiDmFDCV~PtR~aR---- 309 (415)
T TIGR00430 253 VGEPKDDMLRILEHT-----APLLPKDKP--------RYLMGVGTPEDLLDAIR------RGIDMFDCVMPTRNAR---- 309 (415)
T ss_pred CCCCHHHHHHHHHHH-----HCCCCCCCC--------CCCCCCCCHHHHHHHHH------HCCCHHHCCCHHHHCC----
T ss_conf 258889988899875-----035777688--------40205488899999998------1674100452011115----
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4455505775267881899999999863024424651178----763100024101367420011000788899999999
Q gi|254780943|r 335 YSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVL----ESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLV 410 (608)
Q Consensus 335 ~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~----~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ 410 (608)
..+|++.-...|.. ++-..+.|=|-. .|||.++|||.. -|.||=-.+--+
T Consensus 310 --~G~lfv~Pa~GGnv------------rnkf~~~ikNA~y~~D~~P~d~~C~Cy~------------Ck~YSRAYL~HL 363 (415)
T TIGR00430 310 --NGTLFVTPAEGGNV------------RNKFRINIKNAKYKDDTRPVDEECDCYT------------CKNYSRAYLRHL 363 (415)
T ss_pred --CCEEEEECCCCCCC------------CCEEEEEECCCCCCCCCCCCCCCCCCCC------------CCCHHHHHHHHH
T ss_conf --83378632788620------------1213676246463247768887777631------------441127898788
Q ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf -----999997762120015776322799987599999999976--7744677987
Q gi|254780943|r 411 -----IMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNI--YSQIEKLCCG 459 (608)
Q Consensus 411 -----llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~--~~~i~~~a~~ 459 (608)
||.+.|+-. . -+.-+.+|-+.+++++.+- .+..+...++
T Consensus 364 ~r~~EllG~rL~s~---------H-Nl~f~~rL~~~iR~AI~~d~f~~F~~~f~~~ 409 (415)
T TIGR00430 364 IRAKELLGARLASL---------H-NLHFLLRLMEKIRQAILEDRFLSFREEFLEK 409 (415)
T ss_pred HHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 86317999999778---------8-9999999999998875368733058999997
No 403
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.08 E-value=49 Score=12.30 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=7.4
Q ss_pred HHHHHHHHH-HCCCEEEEEEC
Q ss_conf 999999998-27980899956
Q gi|254780943|r 528 TLSNIQEIV-TRGGRVIFITD 547 (608)
Q Consensus 528 ~~s~~~Ei~-arg~~vi~I~~ 547 (608)
+.+.+++++ ..|-.++++|.
T Consensus 184 i~~ll~~l~~~~g~TiI~iTH 204 (286)
T PRK13646 184 VMRLLKSLQTDENKAIILISH 204 (286)
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999953989999913
No 404
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=20.05 E-value=40 Score=12.96 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 7881899999999863024424651178763100024101
Q gi|254780943|r 347 SGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIF 386 (608)
Q Consensus 347 SGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i 386 (608)
.|-.-+|-.=++..|..|+.+++.|..|+-.+||+++...
T Consensus 160 ~GP~fET~AEir~~~~~GaDvVGMStvpEvilAre~gl~~ 199 (245)
T PRK09136 160 QGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPY 199 (245)
T ss_pred ECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCE
T ss_conf 7998888999999998399975577448999999779977
No 405
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=20.04 E-value=14 Score=16.16 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=18.5
Q ss_pred CCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 44555057752678818-999999998630244246511787
Q gi|254780943|r 335 YSSKWASLFISQSGETA-DTLASLRYMRTQGLTIGSLVNVLE 375 (608)
Q Consensus 335 ~~~~tlvI~iSQSGeT~-dti~Al~~ak~~g~~tiaItN~~~ 375 (608)
.++..+.+++ |||. +++++++-.++.|+..+.|.-...
T Consensus 214 ~TKSgiMlGL---GEt~~Ev~e~m~DLr~~gvdilTiGQYlq 252 (306)
T COG0320 214 PTKSGLMVGL---GETDEEVIEVMDDLRSAGVDILTIGQYLQ 252 (306)
T ss_pred CCCCCEEEEC---CCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 3112135505---77689999999999985998997300147
No 406
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=50 Score=12.30 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCEECCCCCCCCCCHHHHHCCCCCHHCCCHHHHHHHH
Q ss_conf 99607760896136613762011111037982765188973057410033322210001100012100001407899999
Q gi|254780943|r 175 GPPLIIGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAPFLIGKGNYRHFMEK 254 (608)
Q Consensus 175 gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~dgei~~i~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~kg~y~hfm~k 254 (608)
++|++ .++.-||++-...+.-...++. ++=+++-..+++.-+. ..|....-+ .++.....- .-|| |+|
T Consensus 30 q~~f~--~g~KlYfcTantK~~yKqik~n---p~vefcg~~kdg~~vr-lrg~a~f~~--nielkk~al--e~yP--~Lk 97 (132)
T COG5015 30 QVMFV--EGEKLYFCTANTKPYYKQIKKN---PEVEFCGMDKDGVMVR-LRGRAEFVE--NIELKKLAL--EIYP--VLK 97 (132)
T ss_pred CCEEE--ECCEEEEEECCCHHHHHHHHHC---CCEEEEEECCCCEEEE-EEEEEEECC--CHHHHHHHH--HHCH--HHH
T ss_conf 42465--0888999917984789987539---9717987657845999-961387515--367899886--6463--567
Q ss_pred HHHHCHH
Q ss_conf 9741789
Q gi|254780943|r 255 EIYEQPE 261 (608)
Q Consensus 255 EI~EQP~ 261 (608)
|||+.|+
T Consensus 98 eiy~tdd 104 (132)
T COG5015 98 EIYPTDD 104 (132)
T ss_pred HHCCCCC
T ss_conf 4120899
Done!