BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] (608 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 608 Score = 1249 bits (3233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 608/608 (100%), Positives = 608/608 (100%) Query: 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNK 60 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNK Sbjct: 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNK 60 Query: 61 KPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT 120 KPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT Sbjct: 61 KPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT 120 Query: 121 ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLII 180 ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLII Sbjct: 121 ETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLII 180 Query: 181 GHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAP 240 GHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAP Sbjct: 181 GHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIAP 240 Query: 241 FLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGT 300 FLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGT Sbjct: 241 FLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGT 300 Query: 301 SYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYM 360 SYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYM Sbjct: 301 SYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYM 360 Query: 361 RTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVR 420 RTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVR Sbjct: 361 RTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVR 420 Query: 421 GYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALE 480 GYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALE Sbjct: 421 GYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALE 480 Query: 481 GALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGG 540 GALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGG Sbjct: 481 GALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGG 540 Query: 541 RVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRN 600 RVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRN Sbjct: 541 RVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPRN 600 Query: 601 LAKSVTVE 608 LAKSVTVE Sbjct: 601 LAKSVTVE 608 >gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 488 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 17/216 (7%) Query: 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSE-LEKELNK 60 CG+ GI+G L L++RG +++G+ + K R G + + K Sbjct: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 Query: 61 KPLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFSSQQ 116 L GN+ I H R++T G N P + GIA+ HNG N L+K+ SS Sbjct: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 Query: 117 VFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGP 176 +F + +DTEVI L+ + KNGS + ++ + G+Y++ + + ++A + P Sbjct: 135 IFQSTSDTEVILHLIARSQKNGSCDR--FIDSLRHVQGAYAMLALTR----TKLIATRDP 188 Query: 177 ----PLIIGHGEGEMFVGSDVTALTLLTDKVTYMED 208 PLI+G G+ S+ AL + K Y+ D Sbjct: 189 IGIRPLIMGELHGKPIFCSETCALEITGAK--YIRD 222 >gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str. psy62] Length = 278 Score = 28.5 bits (62), Expect = 0.32, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 512 GTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFI 545 T +I ++ QK L I + V RGGR++F+ Sbjct: 39 NTHIIDLSQTVPMLQKALQVISDTVARGGRILFV 72 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 10 RESVGERLFKALKRLEYRG 28 R +GE KA+K+++YRG Sbjct: 250 RTEIGETCVKAMKKIDYRG 268 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.138 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 388,477 Number of Sequences: 1233 Number of extensions: 16994 Number of successful extensions: 53 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 4 length of query: 608 length of database: 328,796 effective HSP length: 79 effective length of query: 529 effective length of database: 231,389 effective search space: 122404781 effective search space used: 122404781 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)