RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)



>gnl|CDD|102546 PRK06772, PRK06772, salicylate synthase Irp9; Reviewed.
          Length = 434

 Score = 31.6 bits (71), Expect = 0.19
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 142 SLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAGMLVFVPRNKVIMLKMSAEDSA 201
           S+  L + V G++ E   N    D  TV  P   +  +G    +P+N  +   M  E + 
Sbjct: 318 SVQHLGSGVSGQLAE---NKDAWDAFTVLFPS--ITASG----IPKNAALNAIMQIEKTP 368

Query: 202 KMLISGGLLIPDNISYDA 219
           + L SG +L+ D+  +DA
Sbjct: 369 RELYSGAILLLDDTRFDA 386


>gnl|CDD|163524 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA.  Members
           of this protein family are the archaeal form, MnfA, of
           tyrosine decarboxylase, and are involved in methanofuran
           biosynthesis. Members show clear homology to the
           Enterococcus form, Tdc, that is involved in tyrosine
           decarboxylation for resistance to acidic conditions.
          Length = 373

 Score = 28.1 bits (63), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 42  FDGFIVPYIPMQYNPEYYCDFSIPG 66
           F GF++P++   YNP  + DFS+PG
Sbjct: 192 FGGFVIPFLKKGYNPPPF-DFSLPG 215


>gnl|CDD|131890 TIGR02843, CyoB, cytochrome o ubiquinol oxidase, subunit I.
           Cytochrome o terminal oxidase complex is the component
           of the aerobic respiratory chain which reacts with
           oxygen, reducing it to water with the concomitant
           transport of 4 protons across the membrane. Also known
           as the cytochrome bo complex, cytochrome o ubiquinol
           oxidase contains four subunits, two heme b cofactors and
           a copper atom which is believed to be the oxygen active
           site. This complex is structurally related to the
           cytochrome caa3 oxidases which utilize cytochrome c as
           the reductant and contain heme a cofactors, as well as
           the intermediate form aa3 oxidases which also react
           directly with quinones as the reductant.
          Length = 646

 Score = 28.1 bits (63), Expect = 2.0
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 19/90 (21%)

Query: 6   FHTSISAKVRNNFFAGFIICAPIAITI-----WLSLSLIHWFDGFIVPYIPM-------- 52
           FH  I   V    FAG     P A            S   WF GF + ++P+        
Sbjct: 419 FHNVIIGGVVFGCFAGLTYWFPKAFGFKLNEKLGKRSFWCWFIGFYLAFMPLYILGFMGM 478

Query: 53  -----QY-NPEYYCDFSIPGFGLLVVIVGI 76
                 Y NPE++    I  FG  ++  GI
Sbjct: 479 TRRLNHYDNPEWHPMLIIAAFGAFLIACGI 508


>gnl|CDD|130716 TIGR01655, yxeA_fam, conserved hypothetical protein TIGR01655.
           This model represents a family of small (about 115 amino
           acids) uncharacterized proteins with N-terminal signal
           sequences, found exclusively in Gram-positive organisms.
           Most genomes that have any members of this family have
           at least two members.
          Length = 114

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 67  FGLLVVIVGINIVG--FFGRNLLGRFVFFLSESILNNTPIV 105
             LL +IV I IVG          RF +++   I N+   V
Sbjct: 6   AILLALIVVITIVGIEISHPVYSDRFNYYI--KIKNDYKEV 44


>gnl|CDD|116466 pfam07854, DUF1646, Protein of unknown function (DUF1646).  Some of
           the members of this family are hypothetical bacterial
           and archaeal proteins, but others are annotated as being
           cation transporters expressed by the archaebacterium
           Methanosarcina mazei.
          Length = 347

 Score = 26.6 bits (59), Expect = 5.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 203 MLISGGLLIPDNI 215
           +LISGG+LIP NI
Sbjct: 297 LLISGGMLIPGNI 309


>gnl|CDD|179707 PRK04011, PRK04011, peptide chain release factor 1; Provisional.
          Length = 411

 Score = 26.4 bits (59), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 160 NIGCEDMVT-VFIPPTPLPT 178
             G EDM T V  PP P+PT
Sbjct: 99  GPGTEDMETYVIEPPEPVPT 118


>gnl|CDD|162469 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
           (type V).  These P-type ATPases form a distinct clade
           but the substrate of their pumping activity has yet to
           be determined. This clade has been designated type V in.
          Length = 1054

 Score = 26.6 bits (59), Expect = 6.3
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 104 IVRHLYKSTK-QIIRTLLKEDSTSFKN--------ACLVEYPSAGFWSLCFLTTEVKGEI 154
           +VR  + ++K Q++R++L      FK           L      GF          K   
Sbjct: 336 VVRTGFSTSKGQLVRSILYPKPRVFKFYKDSFKFILFLAVLALIGFIYTIIELI--KDGR 393

Query: 155 KEKFSNIGCEDMVTVFIPPTPLPTA 179
                 +   D++T+ +PP  LP  
Sbjct: 394 PLGKIILRSLDIITIVVPPA-LPAE 417


>gnl|CDD|152330 pfam11894, DUF3414, Protein of unknown function (DUF3414).  This
           family of proteins are functionally uncharacterized.
           This protein is found in eukaryotes. Proteins in this
           family are typically between 764 to 2011 amino acids in
           length. This protein has a conserved LLG sequence motif.
          Length = 1611

 Score = 26.1 bits (58), Expect = 8.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 80  GFFGRNLLGRFVFFLSESILNNTPIVRHLY 109
            F   N+L   +    ++IL N  I+ HL 
Sbjct: 820 LFSPLNVLLSGLSSFEDAILFNLNIIAHLA 849


>gnl|CDD|183457 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate
           synthase family transferase; Provisional.
          Length = 524

 Score = 25.8 bits (58), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 7/19 (36%)

Query: 40  HWFDGFIVPYIPMQYNPEY 58
           H+FDG+       + NPEY
Sbjct: 148 HFFDGY-------KANPEY 159


>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional.
          Length = 300

 Score = 25.9 bits (57), Expect = 9.5
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 67  FGLLVVIVGINIVGFFGRNLLGRFVFFLSESI-LNNTPIVRHLYKSTKQIIRTLLKEDST 125
             +L VI+ + +  FF       F+F  S  + L+       +++  K I +T +  D+ 
Sbjct: 1   MVVLAVIIALGVAAFFA------FMFSRSPPVALDPD-----MFQHFKLIKKTEVTHDTF 49

Query: 126 SFKNA 130
            F+ A
Sbjct: 50  IFRFA 54


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,757,108
Number of extensions: 238825
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 32
Length of query: 228
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,049,753
Effective search space: 558865914
Effective search space used: 558865914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)