RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.11
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 193 LKMSAEDSAKML 204
           LK+ A+DSA  L
Sbjct: 29  LKLYADDSAPAL 40



 Score = 26.5 bits (57), Expect = 5.3
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 52 MQYNPEYYCDFSIPGFGL 69
          +Q + + Y D S P   +
Sbjct: 25 LQASLKLYADDSAPALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.8 bits (64), Expect = 1.0
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 10/47 (21%)

Query: 86  LLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLLKEDSTSFKNACL 132
           L+G+F+ ++S  +  +            Q++   L E    F+N  L
Sbjct: 60  LVGKFLGYVSSLVEPSKV------GQFDQVLNLCLTE----FENCYL 96


>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1
           complex, multisubunit tethering complex, snare proteins;
           2.60A {Saccharomyces cerevisiae}
          Length = 709

 Score = 28.4 bits (63), Expect = 1.4
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 34  LSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFGLLVVIVGINI 78
           LS   I W +G + P      N   +  F I  +  +       I
Sbjct: 154 LSTKFIGWVEGVLKPLD--HLNKRLHLIFKINEWEKMPDSELFKI 196


>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion,
           snare, coiled coil, lipoprotein, membrane,
           phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB:
           1h8m_A 1iou_A
          Length = 144

 Score = 25.9 bits (57), Expect = 7.5
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 80  GFFGRNLLGRFVFFLSESILNNTPI-VRHLYKSTKQIIRTLLKEDSTSFKNACLVEYPS 137
           GFF R+ +G+F+ F +E++ + T    R   +    I     + +          EYP 
Sbjct: 33  GFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPV 91


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,994,283
Number of extensions: 91926
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 13
Length of query: 228
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 139
Effective length of database: 3,535,514
Effective search space: 491436446
Effective search space used: 491436446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)