BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score =  466 bits (1198), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MKKKSFHTSISAKVRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYC 60
           MKKKSFHTSISAKVRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYC
Sbjct: 1   MKKKSFHTSISAKVRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYC 60

Query: 61  DFSIPGFGLLVVIVGINIVGFFGRNLLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLL 120
           DFSIPGFGLLVVIVGINIVGFFGRNLLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLL
Sbjct: 61  DFSIPGFGLLVVIVGINIVGFFGRNLLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLL 120

Query: 121 KEDSTSFKNACLVEYPSAGFWSLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAG 180
           KEDSTSFKNACLVEYPSAGFWSLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAG
Sbjct: 121 KEDSTSFKNACLVEYPSAGFWSLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAG 180

Query: 181 MLVFVPRNKVIMLKMSAEDSAKMLISGGLLIPDNISYDAQPESNSVKK 228
           MLVFVPRNKVIMLKMSAEDSAKMLISGGLLIPDNISYDAQPESNSVKK
Sbjct: 181 MLVFVPRNKVIMLKMSAEDSAKMLISGGLLIPDNISYDAQPESNSVKK 228


>gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 671

 Score = 27.3 bits (59), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 6   FHTSISAKVRNNFFAGFIICAPIAI-----TIWLSLSLIHWFDGFIVPYIPM 52
           FH +I   V    FAG +   P A      + W  +S   WF GF + ++P+
Sbjct: 430 FHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPL 481


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 25.4 bits (54), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 129 NACLVEYPSAGFWSLCFLTTEVKGEIKEK 157
           NAC  E+  AG   +  ++  +KG+ +EK
Sbjct: 401 NACSTEFSEAGVPVIALMSEWMKGDQQEK 429


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,789
Number of Sequences: 1233
Number of extensions: 6201
Number of successful extensions: 18
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 328,796
effective HSP length: 71
effective length of query: 157
effective length of database: 241,253
effective search space: 37876721
effective search space used: 37876721
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)