HHsearch alignment for GI: 254780945 and conserved domain: CHL00122

>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=99.04  E-value=7e-08  Score=81.38  Aligned_cols=242  Identities=19%  Similarity=0.257  Sum_probs=161.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             14422369999997334443054588612799999999862110145786589962464225667687762134754864
Q gi|254780945|r  301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII  380 (700)
Q Consensus       301 DVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiI  380 (700)
T Consensus        97 ~TGEGKTL~atlp~ylnal~GkgvhvvTvNdYLA~RDae~m~~vy~~lGlsvg~i~~~~~~~er~~aY~------~DItY  170 (891)
T CHL00122         97 KTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLARRDSEWMGQIYRFLGLSVGLIQEDMSIEERKQNYK------ADITY  170 (891)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHC------CCCEE
T ss_conf             068857999999999997559972998064565686699999999982966702089999799999835------89279


Q ss_pred             ECHHHCC------------CCCCCCCCCEEEECCCC----------------------C----------------CCHHH
Q ss_conf             1112013------------34554444178852101----------------------3----------------35688
Q gi|254780945|r  381 GTHALFQ------------DSIQYYKLILVIVDEQH----------------------R----------------FGVQQ  410 (700)
Q Consensus       381 GTHAL~q------------~~v~F~~LgLvViDEQH----------------------R----------------FGV~Q  410 (700)
T Consensus       171 ~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPLiIsg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~  250 (891)
T CHL00122        171 VTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSILIDEARTPLIISGPVETPIDKYIVAAEIANYLEKDVHYEVDE  250 (891)
T ss_pred             ECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECH
T ss_conf             78876222566633236878840889973788640455432256885862798774478999999986437766678622


Q ss_pred             HH---HHHHCC---------------------------------------------------------------------
Q ss_conf             99---874025---------------------------------------------------------------------
Q gi|254780945|r  411 RL---KLTQKA---------------------------------------------------------------------  418 (700)
Q Consensus       411 R~---~L~~Kg---------------------------------------------------------------------  418 (700)
T Consensus       251 ~~~~v~lte~G~~~~e~~l~~~~ly~~~~~~~~~i~~al~A~~lf~~d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLHQ  330 (891)
T CHL00122        251 KNRNIILTDQGILQCEKILKIKDLYDPEDPWIPYILNAIKAKELFIKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQ  330 (891)
T ss_pred             HHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHH
T ss_conf             31578506326999986137534478543399999999999987606974899889899986788887899935647799


Q ss_pred             ---------------------------CCCCCEEECHHHHHHHHHHHHHHCCCHHHHC-CCCCCCCCCEEEEEEC--CCH
Q ss_conf             ---------------------------6776101010132278999975201011110-2355766620799970--200
Q gi|254780945|r  419 ---------------------------TAPHVLLMTATPIPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPI--NRI  468 (700)
Q Consensus       419 ---------------------------~~ph~L~MtATPIPRTLal~~ygdldvS~i~-e~P~gR~~I~T~~~~~--~~~  468 (700)
T Consensus       331 aiEaKE~v~i~~e~~t~A~IT~Qn~Fr~y~klsGMTGTA~te~~Ef~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~  410 (891)
T CHL00122        331 AIEAKENVPIQQETQTLASITYQNFFLLYPKLSGMTGTAKTEEVELEKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKW  410 (891)
T ss_pred             HHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHH
T ss_conf             99987188778887213666599998545042267567687899999985884798899998500308895778899999


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             26899997631038738999712012211121014666666686637103120146998999999999755986999980
Q gi|254780945|r  469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT  548 (700)
Q Consensus       469 ~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaT  548 (700)
T Consensus       411 ~Av~~ei~~~h~~GqPVLvGT~SVe~SE~l---s-----~~L~~~-gi~h~vLNAk~~n~~~EA~IiA~AG~~gaVTIAT  481 (891)
T CHL00122        411 KAIADECFDMHKIGRPILVGTTSVEKSELL---S-----QLLEEY-QLPHNLLNAKPENVKRESEIIAQAGRKGAITIAT  481 (891)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHHHHH---H-----HHHHHC-CCCCHHHCCCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf             999999999996799989834655889999---9-----999974-7862202388430789999999569999389715


Q ss_pred             HHHHCCCCC
Q ss_conf             034104688
Q gi|254780945|r  549 TVIEVGIDV  557 (700)
Q Consensus       549 tviEVGvdv  557 (700)
T Consensus       482 NMAGRGTDI  490 (891)
T CHL00122        482 NMAGRGTDI  490 (891)
T ss_pred             CCCCCCCCE
T ss_conf             556898784