HHsearch alignment for GI: 254780945 and conserved domain: CHL00122
>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=99.04 E-value=7e-08 Score=81.38 Aligned_cols=242 Identities=19% Similarity=0.257 Sum_probs=161.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 14422369999997334443054588612799999999862110145786589962464225667687762134754864
Q gi|254780945|r 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 (700)
Q Consensus 301 DVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiI 380 (700)
T Consensus 97 ~TGEGKTL~atlp~ylnal~GkgvhvvTvNdYLA~RDae~m~~vy~~lGlsvg~i~~~~~~~er~~aY~------~DItY 170 (891)
T CHL00122 97 KTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLARRDSEWMGQIYRFLGLSVGLIQEDMSIEERKQNYK------ADITY 170 (891)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHC------CCCEE
T ss_conf 068857999999999997559972998064565686699999999982966702089999799999835------89279
Q ss_pred ECHHHCC------------CCCCCCCCCEEEECCCC----------------------C----------------CCHHH
Q ss_conf 1112013------------34554444178852101----------------------3----------------35688
Q gi|254780945|r 381 GTHALFQ------------DSIQYYKLILVIVDEQH----------------------R----------------FGVQQ 410 (700)
Q Consensus 381 GTHAL~q------------~~v~F~~LgLvViDEQH----------------------R----------------FGV~Q 410 (700)
T Consensus 171 ~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPLiIsg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~ 250 (891)
T CHL00122 171 VTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSILIDEARTPLIISGPVETPIDKYIVAAEIANYLEKDVHYEVDE 250 (891)
T ss_pred ECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECH
T ss_conf 78876222566633236878840889973788640455432256885862798774478999999986437766678622
Q ss_pred HH---HHHHCC---------------------------------------------------------------------
Q ss_conf 99---874025---------------------------------------------------------------------
Q gi|254780945|r 411 RL---KLTQKA--------------------------------------------------------------------- 418 (700)
Q Consensus 411 R~---~L~~Kg--------------------------------------------------------------------- 418 (700)
T Consensus 251 ~~~~v~lte~G~~~~e~~l~~~~ly~~~~~~~~~i~~al~A~~lf~~d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLHQ 330 (891)
T CHL00122 251 KNRNIILTDQGILQCEKILKIKDLYDPEDPWIPYILNAIKAKELFIKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQ 330 (891)
T ss_pred HHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 31578506326999986137534478543399999999999987606974899889899986788887899935647799
Q ss_pred ---------------------------CCCCCEEECHHHHHHHHHHHHHHCCCHHHHC-CCCCCCCCCEEEEEEC--CCH
Q ss_conf ---------------------------6776101010132278999975201011110-2355766620799970--200
Q gi|254780945|r 419 ---------------------------TAPHVLLMTATPIPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPI--NRI 468 (700)
Q Consensus 419 ---------------------------~~ph~L~MtATPIPRTLal~~ygdldvS~i~-e~P~gR~~I~T~~~~~--~~~ 468 (700)
T Consensus 331 aiEaKE~v~i~~e~~t~A~IT~Qn~Fr~y~klsGMTGTA~te~~Ef~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~ 410 (891)
T CHL00122 331 AIEAKENVPIQQETQTLASITYQNFFLLYPKLSGMTGTAKTEEVELEKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKW 410 (891)
T ss_pred HHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHH
T ss_conf 99987188778887213666599998545042267567687899999985884798899998500308895778899999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 26899997631038738999712012211121014666666686637103120146998999999999755986999980
Q gi|254780945|r 469 DEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIAT 548 (700)
Q Consensus 469 ~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaT 548 (700)
T Consensus 411 ~Av~~ei~~~h~~GqPVLvGT~SVe~SE~l---s-----~~L~~~-gi~h~vLNAk~~n~~~EA~IiA~AG~~gaVTIAT 481 (891)
T CHL00122 411 KAIADECFDMHKIGRPILVGTTSVEKSELL---S-----QLLEEY-QLPHNLLNAKPENVKRESEIIAQAGRKGAITIAT 481 (891)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHH---H-----HHHHHC-CCCCHHHCCCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 999999999996799989834655889999---9-----999974-7862202388430789999999569999389715
Q ss_pred HHHHCCCCC
Q ss_conf 034104688
Q gi|254780945|r 549 TVIEVGIDV 557 (700)
Q Consensus 549 tviEVGvdv 557 (700)
T Consensus 482 NMAGRGTDI 490 (891)
T CHL00122 482 NMAGRGTDI 490 (891)
T ss_pred CCCCCCCCE
T ss_conf 556898784