HHsearch alignment for GI: 254780945 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=92.12 E-value=1.1 Score=25.05 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=105.0
Q ss_pred CCCCEEE-EEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCE-EEEEECCC---CHHHHH
Q ss_conf 1343078-862144223699999973344430545886127999999998621101457865-89962464---225667
Q gi|254780945|r 291 KNRMLRI-LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEIITGNM---PQAHRR 365 (700)
Q Consensus 291 ~~pM~RL-LQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~-v~lLtg~~---~~~er~ 365 (700)
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~-~~L~~~~~~aVI~~-Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~ 84 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTL-RALKDEYKIAVITG-DIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNL 84 (202)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHH-HHHHHHCCEEEEEC-EEECHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHH
T ss_conf 5864899961799867899999999-99975277689964-04006559999737---7980687403876588678899
Q ss_pred HHHHHHCCC-C-CEEEEECH-----HHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHC-CC---CCCCEEECHHHHHHH
Q ss_conf 687762134-7-54864111-----2013345544441788521013356889987402-56---776101010132278
Q gi|254780945|r 366 KALERIAHG-Q-AHIIIGTH-----ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK-AT---APHVLLMTATPIPRT 434 (700)
Q Consensus 366 ~i~~~i~~G-~-~~iiIGTH-----AL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~K-g~---~ph~L~MtATPIPRT 434 (700)
T Consensus 85 ~ai~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~-d~~~v~Vid------vteGe~~P~K~gP~i~~aDllVInK~D---- 153 (202)
T COG0378 85 EAIEELVLDFPDLDLLFIESVGNLVCPFSPDLG-DHLRVVVID------VTEGEDIPRKGGPGIFKADLLVINKTD---- 153 (202)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCEECCCCCCHH-HCEEEEEEE------CCCCCCCCCCCCCCEEEEEEEEEEHHH----
T ss_conf 999998631776778999237643244680413-046999998------788888765579964674189985677----
Q ss_pred HHHHHHHCCCHHH----HCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 9999752010111----10235576662079997020026899997631
Q gi|254780945|r 435 LVLTSLGDIDISK----ITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 (700)
Q Consensus 435 Lal~~ygdldvS~----i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l 479 (700)
T Consensus 154 --La~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 154 --LAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred --HHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf --38772866999999999849999889984787868999999987640