HHsearch alignment for GI: 254780945 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.91  E-value=9e-21  Score=182.48  Aligned_cols=320  Identities=24%  Similarity=0.314  Sum_probs=227.4

Q ss_pred             CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----HCC-EEEEEHH
Q ss_conf             775789999863024-6798899999999984100134307886214422369999997334443----054-5886127
Q gi|254780945|r  257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQ-AVIMAPI  330 (700)
Q Consensus       257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~----G~Q-~alMaPT  330 (700)
T Consensus        36 l~~~ll~~l~~-~gf~~pt~IQ~~~iP~~l~g------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PT  108 (513)
T COG0513          36 LSPELLQALKD-LGFEEPTPIQLAAIPLILAG------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT  108 (513)
T ss_pred             CCHHHHHHHHH-CCCCCCCHHHHHHCHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             99999999996-59899898999658776369------997998689871789999999999740045577756997799


Q ss_pred             HHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH----HCC-CCCCCCCCCEEEECCCC
Q ss_conf             999999998621101457-865899624642256676877621347548641112----013-34554444178852101
Q gi|254780945|r  331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----LFQ-DSIQYYKLILVIVDEQH  404 (700)
Q Consensus       331 EILA~QH~~~~~~~~~~~-~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA----L~q-~~v~F~~LgLvViDEQH  404 (700)
T Consensus       109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD  184 (513)
T COG0513         109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD  184 (513)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf             999999999999998624584299998998989999---987249-9899979608999986488554650189967617


Q ss_pred             CC---CHHHH-HHHHHC-CCCCCCEEECHHHHHHHHHHHHHHCC-CHHHHCCCCCC----CCCCEEEEEECCCHH---HH
Q ss_conf             33---56889-987402-56776101010132278999975201-01111023557----666207999702002---68
Q gi|254780945|r  405 RF---GVQQR-LKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAG----RKPIKTVIIPINRID---EV  471 (700)
Q Consensus       405 RF---GV~QR-~~L~~K-g~~ph~L~MtATPIPRTLal~~ygdl-dvS~i~e~P~g----R~~I~T~~~~~~~~~---~~  471 (700)
T Consensus       185 rmld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~-~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~  263 (513)
T COG0513         185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELA-RRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL  263 (513)
T ss_pred             HHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH-HHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHH
T ss_conf             663887689999999738977489999824898999999-9973688079964322335300470799980856779999


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf             99997631038738999712012211121014666666686637103120146998999999999755986999980034
Q gi|254780945|r  472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI  551 (700)
Q Consensus       472 ~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtvi  551 (700)
T Consensus       264 L~~ll~~~~~~-~~IVF~~tk--------~~~~~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDva  333 (513)
T COG0513         264 LLKLLKDEDEG-RVIVFVRTK--------RLVEELAESLRKR-GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA  333 (513)
T ss_pred             HHHHHHCCCCC-EEEEEECCH--------HHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf             99998278888-399995767--------7699999999978-9659997388998899999999975998989980654


Q ss_pred             HCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf             104688876589985852547468877301166789835999970888
Q gi|254780945|r  552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP  599 (700)
Q Consensus       552 EVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~  599 (700)
T Consensus       334 aRGiDi~~v~~VinyD~p~~~e~yvHR-iGRTgRaG~~G~ai~fv~~~  380 (513)
T COG0513         334 ARGLDIPDVSHVINYDLPLDPEDYVHR-IGRTGRAGRKGVAISFVTEE  380 (513)
T ss_pred             HCCCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCEEEEEECCH
T ss_conf             468996667479978799980413173-45343489987279985562