HHsearch alignment for GI: 254780945 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.91 E-value=9e-21 Score=182.48 Aligned_cols=320 Identities=24% Similarity=0.314 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----HCC-EEEEEHH
Q ss_conf 775789999863024-6798899999999984100134307886214422369999997334443----054-5886127
Q gi|254780945|r 257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQ-AVIMAPI 330 (700)
Q Consensus 257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~----G~Q-~alMaPT 330 (700)
T Consensus 36 l~~~ll~~l~~-~gf~~pt~IQ~~~iP~~l~g------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKD-LGFEEPTPIQLAAIPLILAG------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHCHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 99999999996-59899898999658776369------997998689871789999999999740045577756997799
Q ss_pred HHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH----HCC-CCCCCCCCCEEEECCCC
Q ss_conf 999999998621101457-865899624642256676877621347548641112----013-34554444178852101
Q gi|254780945|r 331 GILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA----LFQ-DSIQYYKLILVIVDEQH 404 (700)
Q Consensus 331 EILA~QH~~~~~~~~~~~-~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA----L~q-~~v~F~~LgLvViDEQH 404 (700)
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 999999999999998624584299998998989999---987249-9899979608999986488554650189967617
Q ss_pred CC---CHHHH-HHHHHC-CCCCCCEEECHHHHHHHHHHHHHHCC-CHHHHCCCCCC----CCCCEEEEEECCCHH---HH
Q ss_conf 33---56889-987402-56776101010132278999975201-01111023557----666207999702002---68
Q gi|254780945|r 405 RF---GVQQR-LKLTQK-ATAPHVLLMTATPIPRTLVLTSLGDI-DISKITEKPAG----RKPIKTVIIPINRID---EV 471 (700)
Q Consensus 405 RF---GV~QR-~~L~~K-g~~ph~L~MtATPIPRTLal~~ygdl-dvS~i~e~P~g----R~~I~T~~~~~~~~~---~~ 471 (700)
T Consensus 185 rmld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~-~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELA-RRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH-HHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHH
T ss_conf 663887689999999738977489999824898999999-9973688079964322335300470799980856779999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 99997631038738999712012211121014666666686637103120146998999999999755986999980034
Q gi|254780945|r 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 (700)
Q Consensus 472 ~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtvi 551 (700)
T Consensus 264 L~~ll~~~~~~-~~IVF~~tk--------~~~~~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDva 333 (513)
T COG0513 264 LLKLLKDEDEG-RVIVFVRTK--------RLVEELAESLRKR-GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred HHHHHHCCCCC-EEEEEECCH--------HHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 99998278888-399995767--------7699999999978-9659997388998899999999975998989980654
Q ss_pred HCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 104688876589985852547468877301166789835999970888
Q gi|254780945|r 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 (700)
Q Consensus 552 EVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~ 599 (700)
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHR-iGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHR-IGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred HCCCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCEEEEEECCH
T ss_conf 468996667479978799980413173-45343489987279985562