HHsearch alignment for GI: 254780945 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=96.11 E-value=0.0062 Score=42.60 Aligned_cols=317 Identities=19% Similarity=0.260 Sum_probs=175.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC----CEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 4679889999999998410013430788621442236999999733444305----458861279999999986211014
Q gi|254780945|r 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQ 346 (700)
Q Consensus 271 F~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~----Q~alMaPTEILA~QH~~~~~~~~~ 346 (700)
T Consensus 337 ~~lr~yq~~g~~wl~~-~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw-~~e~~k~~~ 414 (866)
T COG0553 337 AELRPYQLEGVNWLSE-LLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNW-KREFEKFAP 414 (866)
T ss_pred CCCHHHHHHHHHHHHH-HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH-HHHHHHHCC
T ss_conf 1104889986699999-87762368775752334219999999877776401357872687147777679-999986141
Q ss_pred CCCCEEEEEECCCC-HHHHHHHHHH-HCCC---CCEEEEECHHHCCC----CCCCC--CCCEEEECCCCCCCHHHHHHHH
Q ss_conf 57865899624642-2566768776-2134---75486411120133----45544--4417885210133568899874
Q gi|254780945|r 347 NTQIIVEIITGNMP-QAHRRKALER-IAHG---QAHIIIGTHALFQD----SIQYY--KLILVIVDEQHRFGVQQRLKLT 415 (700)
Q Consensus 347 ~~~i~v~lLtg~~~-~~er~~i~~~-i~~G---~~~iiIGTHAL~q~----~v~F~--~LgLvViDEQHRFGV~QR~~L~ 415 (700)
T Consensus 415 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~--ikn~~s~~ 491 (866)
T COG0553 415 DLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHR--IKNDQSSE 491 (866)
T ss_pred HHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HHCHHHHH
T ss_conf 2100-23211531121036999999986213301018999999999750205542236776989978875--40477899
Q ss_pred H----CCCCCCCEEECHHHHHHHHHH-----------HHHH------------------CC-------------------
Q ss_conf 0----256776101010132278999-----------9752------------------01-------------------
Q gi|254780945|r 416 Q----KATAPHVLLMTATPIPRTLVL-----------TSLG------------------DI------------------- 443 (700)
Q Consensus 416 ~----Kg~~ph~L~MtATPIPRTLal-----------~~yg------------------dl------------------- 443 (700)
T Consensus 492 ~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 492 GKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 99999875543322899964560899999989985743266238999998601666543201024567789999864326
Q ss_pred --------CHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH-------HHCC---C-----------CEEEEE------
Q ss_conf --------0111102355766620799970200268999976-------3103---8-----------738999------
Q gi|254780945|r 444 --------DISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-------VLSE---G-----------KKAYWI------ 488 (700)
Q Consensus 444 --------dvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~-------~l~~---g-----------~q~y~V------ 488 (700)
T Consensus 572 f~lrr~k~~~~v~~~lp~k~e~~~~~~l~~-~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~ 650 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSE-EQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQ 650 (866)
T ss_pred HHHHHHHHHHHHHHHCCHHHHEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 765400111678874863222001147637-7999999998640337899998875210155554677778788999998
Q ss_pred -E--C-CCCCC-CC---------------------------CCCCHHHHHH-----------------------HHHHHH
Q ss_conf -7--1-20122-11---------------------------1210146666-----------------------666866
Q gi|254780945|r 489 -C--P-QIEEK-KE---------------------------SNFRSVVERF-----------------------NSLHEH 513 (700)
Q Consensus 489 -c--P-lIees-e~---------------------------~~~~~~~~~~-----------------------~~l~~~ 513 (700)
T Consensus 651 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~ 730 (866)
T COG0553 651 ICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDY 730 (866)
T ss_pred HHCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 72186443043211121244430001102455557886153056899999888998627772348886660599999999
Q ss_pred CC---CCEECCCCCCCHHHHHHHHHHHHCC--CEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCC
Q ss_conf 37---1031201469989999999997559--869999800341046888765899858525474688773011667898
Q gi|254780945|r 514 FT---SSIAIIHGRMSDIDKESVMDSFKNG--TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE 588 (700)
Q Consensus 514 ~~---~~v~~lHGkm~~~ek~~~m~~F~~g--~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~ 588 (700)
T Consensus 731 l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~kagg~glnLt~a~~vi~~d~~wNp-~~e~Qa~dRa~RigQ 809 (866)
T COG0553 731 LKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP-AVELQAIDRAHRIGQ 809 (866)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHHHCCC
T ss_conf 9855875798737875212889999986466775799753005766121456524660776366-799999987876078
Q ss_pred CEEEEE
Q ss_conf 359999
Q gi|254780945|r 589 ISSCIL 594 (700)
Q Consensus 589 ~s~c~l 594 (700)
T Consensus 810 ~~~v~v 815 (866)
T COG0553 810 KRPVKV 815 (866)
T ss_pred EEEEEE
T ss_conf 015999