HHsearch alignment for GI: 254780945 and conserved domain: COG0553

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=96.11  E-value=0.0062  Score=42.60  Aligned_cols=317  Identities=19%  Similarity=0.260  Sum_probs=175.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC----CEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf             4679889999999998410013430788621442236999999733444305----458861279999999986211014
Q gi|254780945|r  271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG----QAVIMAPIGILAQQHYEFIKKYTQ  346 (700)
Q Consensus       271 F~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~----Q~alMaPTEILA~QH~~~~~~~~~  346 (700)
T Consensus       337 ~~lr~yq~~g~~wl~~-~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw-~~e~~k~~~  414 (866)
T COG0553         337 AELRPYQLEGVNWLSE-LLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNW-KREFEKFAP  414 (866)
T ss_pred             CCCHHHHHHHHHHHHH-HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH-HHHHHHHCC
T ss_conf             1104889986699999-87762368775752334219999999877776401357872687147777679-999986141


Q ss_pred             CCCCEEEEEECCCC-HHHHHHHHHH-HCCC---CCEEEEECHHHCCC----CCCCC--CCCEEEECCCCCCCHHHHHHHH
Q ss_conf             57865899624642-2566768776-2134---75486411120133----45544--4417885210133568899874
Q gi|254780945|r  347 NTQIIVEIITGNMP-QAHRRKALER-IAHG---QAHIIIGTHALFQD----SIQYY--KLILVIVDEQHRFGVQQRLKLT  415 (700)
Q Consensus       347 ~~~i~v~lLtg~~~-~~er~~i~~~-i~~G---~~~iiIGTHAL~q~----~v~F~--~LgLvViDEQHRFGV~QR~~L~  415 (700)
T Consensus       415 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~--ikn~~s~~  491 (866)
T COG0553         415 DLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHR--IKNDQSSE  491 (866)
T ss_pred             HHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HHCHHHHH
T ss_conf             2100-23211531121036999999986213301018999999999750205542236776989978875--40477899


Q ss_pred             H----CCCCCCCEEECHHHHHHHHHH-----------HHHH------------------CC-------------------
Q ss_conf             0----256776101010132278999-----------9752------------------01-------------------
Q gi|254780945|r  416 Q----KATAPHVLLMTATPIPRTLVL-----------TSLG------------------DI-------------------  443 (700)
Q Consensus       416 ~----Kg~~ph~L~MtATPIPRTLal-----------~~yg------------------dl-------------------  443 (700)
T Consensus       492 ~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  571 (866)
T COG0553         492 GKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP  571 (866)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             99999875543322899964560899999989985743266238999998601666543201024567789999864326


Q ss_pred             --------CHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH-------HHCC---C-----------CEEEEE------
Q ss_conf             --------0111102355766620799970200268999976-------3103---8-----------738999------
Q gi|254780945|r  444 --------DISKITEKPAGRKPIKTVIIPINRIDEVIERLKV-------VLSE---G-----------KKAYWI------  488 (700)
Q Consensus       444 --------dvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~-------~l~~---g-----------~q~y~V------  488 (700)
T Consensus       572 f~lrr~k~~~~v~~~lp~k~e~~~~~~l~~-~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~  650 (866)
T COG0553         572 FILRRTKEDVEVLKELPPKIEKVLECELSE-EQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQ  650 (866)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             765400111678874863222001147637-7999999998640337899998875210155554677778788999998


Q ss_pred             -E--C-CCCCC-CC---------------------------CCCCHHHHHH-----------------------HHHHHH
Q ss_conf             -7--1-20122-11---------------------------1210146666-----------------------666866
Q gi|254780945|r  489 -C--P-QIEEK-KE---------------------------SNFRSVVERF-----------------------NSLHEH  513 (700)
Q Consensus       489 -c--P-lIees-e~---------------------------~~~~~~~~~~-----------------------~~l~~~  513 (700)
T Consensus       651 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~  730 (866)
T COG0553         651 ICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDY  730 (866)
T ss_pred             HHCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             72186443043211121244430001102455557886153056899999888998627772348886660599999999


Q ss_pred             CC---CCEECCCCCCCHHHHHHHHHHHHCC--CEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCC
Q ss_conf             37---1031201469989999999997559--869999800341046888765899858525474688773011667898
Q gi|254780945|r  514 FT---SSIAIIHGRMSDIDKESVMDSFKNG--TCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEE  588 (700)
Q Consensus       514 ~~---~~v~~lHGkm~~~ek~~~m~~F~~g--~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~  588 (700)
T Consensus       731 l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~kagg~glnLt~a~~vi~~d~~wNp-~~e~Qa~dRa~RigQ  809 (866)
T COG0553         731 LKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP-AVELQAIDRAHRIGQ  809 (866)
T ss_pred             HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHHHCCC
T ss_conf             9855875798737875212889999986466775799753005766121456524660776366-799999987876078


Q ss_pred             CEEEEE
Q ss_conf             359999
Q gi|254780945|r  589 ISSCIL  594 (700)
Q Consensus       589 ~s~c~l  594 (700)
T Consensus       810 ~~~v~v  815 (866)
T COG0553         810 KRPVKV  815 (866)
T ss_pred             EEEEEE
T ss_conf             015999