HHsearch alignment for GI: 254780945 and conserved domain: COG0556

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=99.63  E-value=7.1e-13  Score=120.57  Aligned_cols=195  Identities=19%  Similarity=0.351  Sum_probs=142.7

Q ss_pred             CCCCCEEEECCCCCCCHHHH-----------HHHHHCC-------------------CCCCCEEECHHHHHHHHHHHHHH
Q ss_conf             44441788521013356889-----------9874025-------------------67761010101322789999752
Q gi|254780945|r  392 YYKLILVIVDEQHRFGVQQR-----------LKLTQKA-------------------TAPHVLLMTATPIPRTLVLTSLG  441 (700)
Q Consensus       392 F~~LgLvViDEQHRFGV~QR-----------~~L~~Kg-------------------~~ph~L~MtATPIPRTLal~~yg  441 (700)
T Consensus       329 fp~d~Ll~IDESHv-TvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~e~s~-~  406 (663)
T COG0556         329 FPDDFLLFIDESHV-TVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYELEQSG-G  406 (663)
T ss_pred             CCCCEEEEEECCCC-CHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHCC-C
T ss_conf             88413899824446-507653201333788888987157686111379977799997459779997899748777455-8


Q ss_pred             CCCHHHHCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEC
Q ss_conf             010111102355766-6207999702002689999763103873899971201221112101466666668663710312
Q gi|254780945|r  442 DIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI  520 (700)
Q Consensus       442 dldvS~i~e~P~gR~-~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~  520 (700)
T Consensus       407 ~vveQiI--RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTt--------LTKkmAEdLT~Yl~e~-gikv~Y  475 (663)
T COG0556         407 NVVEQII--RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTT--------LTKKMAEDLTEYLKEL-GIKVRY  475 (663)
T ss_pred             CEEEEEE--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE--------EHHHHHHHHHHHHHHC-CCEEEE
T ss_conf             4268872--4778889852651487747899999999996497299984--------3688899999999866-964786


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf             01469989999999997559869999800341046888765899858525474----68877301166789835999970
Q gi|254780945|r  521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCILLY  596 (700)
Q Consensus       521 lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLRGRVGRg~~~s~c~l~~  596 (700)
T Consensus       476 lHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIl-Y  553 (663)
T COG0556         476 LHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIL-Y  553 (663)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC-CCEEEE-E
T ss_conf             42440389999999997577874898501331347886455798860685444345325999987886357-973999-7


Q ss_pred             CCCCC
Q ss_conf             88899
Q gi|254780945|r  597 HPPLS  601 (700)
Q Consensus       597 ~~~~~  601 (700)
T Consensus       554 AD~iT  558 (663)
T COG0556         554 ADKIT  558 (663)
T ss_pred             CCHHH
T ss_conf             10114