HHsearch alignment for GI: 254780945 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=99.63 E-value=7.1e-13 Score=120.57 Aligned_cols=195 Identities=19% Similarity=0.351 Sum_probs=142.7
Q ss_pred CCCCCEEEECCCCCCCHHHH-----------HHHHHCC-------------------CCCCCEEECHHHHHHHHHHHHHH
Q ss_conf 44441788521013356889-----------9874025-------------------67761010101322789999752
Q gi|254780945|r 392 YYKLILVIVDEQHRFGVQQR-----------LKLTQKA-------------------TAPHVLLMTATPIPRTLVLTSLG 441 (700)
Q Consensus 392 F~~LgLvViDEQHRFGV~QR-----------~~L~~Kg-------------------~~ph~L~MtATPIPRTLal~~yg 441 (700)
T Consensus 329 fp~d~Ll~IDESHv-TvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~e~s~-~ 406 (663)
T COG0556 329 FPDDFLLFIDESHV-TVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYELEQSG-G 406 (663)
T ss_pred CCCCEEEEEECCCC-CHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHCC-C
T ss_conf 88413899824446-507653201333788888987157686111379977799997459779997899748777455-8
Q ss_pred CCCHHHHCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEC
Q ss_conf 010111102355766-6207999702002689999763103873899971201221112101466666668663710312
Q gi|254780945|r 442 DIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAI 520 (700)
Q Consensus 442 dldvS~i~e~P~gR~-~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~ 520 (700)
T Consensus 407 ~vveQiI--RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTt--------LTKkmAEdLT~Yl~e~-gikv~Y 475 (663)
T COG0556 407 NVVEQII--RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTT--------LTKKMAEDLTEYLKEL-GIKVRY 475 (663)
T ss_pred CEEEEEE--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE--------EHHHHHHHHHHHHHHC-CCEEEE
T ss_conf 4268872--4778889852651487747899999999996497299984--------3688899999999866-964786
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 01469989999999997559869999800341046888765899858525474----68877301166789835999970
Q gi|254780945|r 521 IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGRGEEISSCILLY 596 (700)
Q Consensus 521 lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLRGRVGRg~~~s~c~l~~ 596 (700)
T Consensus 476 lHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIl-Y 553 (663)
T COG0556 476 LHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIL-Y 553 (663)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC-CCEEEE-E
T ss_conf 42440389999999997577874898501331347886455798860685444345325999987886357-973999-7
Q ss_pred CCCCC
Q ss_conf 88899
Q gi|254780945|r 597 HPPLS 601 (700)
Q Consensus 597 ~~~~~ 601 (700)
T Consensus 554 AD~iT 558 (663)
T COG0556 554 ADKIT 558 (663)
T ss_pred CCHHH
T ss_conf 10114