HHsearch alignment for GI: 254780945 and conserved domain: COG0556

Probab=96.01  E-value=0.039  Score=36.30  Aligned_cols=127  Identities=14%  Similarity=0.317  Sum_probs=89.0

Q ss_pred             CCCCCHHHHHHHHHHHHH--HCCCCCCEEEEEECCCCCHHHHHHH-HHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf             246798899999999984--1001343078862144223699999-9733444305458861279999999986211014
Q gi|254780945|r  270 PFSPTKSQESAIKDILQD--MSQKNRMLRILQGDVGSGKTLVALI-AMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ  346 (700)
Q Consensus       270 PF~LT~~Q~~ai~eI~~D--l~~~~pM~RLLQGDVGSGKTiVA~~-A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~  346 (700)
T Consensus       398 ~~E~e~s~~~vveQiIRPTGLlDP~ievRp~~~Qvd------DL~~EI~~r~~~~eRvLVTtLTKkmAE----dLT~Yl~  467 (663)
T COG0556         398 DYELEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVD------DLLSEIRKRVAKNERVLVTTLTKKMAE----DLTEYLK  467 (663)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHH------HHHHHHHHHHHCCCEEEEEEEHHHHHH----HHHHHHH
T ss_conf             487774558426887247788898526514877478------999999999964972999843688899----9999998


Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             5786589962464225667687762134754864111201334554444178852101335
Q gi|254780945|r  347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFG  407 (700)
Q Consensus       347 ~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFG  407 (700)
T Consensus       468 e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN-LLREGLDiPEVsLVAIlDADKeG  527 (663)
T COG0556         468 ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-LLREGLDLPEVSLVAILDADKEG  527 (663)
T ss_pred             HCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEH-HHHCCCCCCCEEEEEEEECCCCC
T ss_conf             6696478642440389999999997577874898501-33134788645579886068544