HHsearch alignment for GI: 254780945 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=97.74 E-value=0.0072 Score=42.06 Aligned_cols=330 Identities=19% Similarity=0.218 Sum_probs=179.2
Q ss_pred HHHHHHH----HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--HCCEEEEEHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999----99984100134307886214422369999997334443--05458861279999999986211014578
Q gi|254780945|r 276 SQESAIK----DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA--GGQAVIMAPIGILAQQHYEFIKKYTQNTQ 349 (700)
Q Consensus 276 ~Q~~ai~----eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~--G~Q~alMaPTEILA~QH~~~~~~~~~~~~ 349 (700)
T Consensus 252 ~q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~ 331 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF 331 (962)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999712678777238984069837899999999998365999699996728899999999999887632
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-H---HHCCCC---CCCCCCCEEEECCCCCCCHHHHHHHHHCCC-CC
Q ss_conf 658996246422566768776213475486411-1---201334---554444178852101335688998740256-77
Q gi|254780945|r 350 IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-H---ALFQDS---IQYYKLILVIVDEQHRFGVQQRLKLTQKAT-AP 421 (700)
Q Consensus 350 i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-H---AL~q~~---v~F~~LgLvViDEQHRFGV~QR~~L~~Kg~-~p 421 (700)
T Consensus 332 ~~~----~~~s~~~Lk~~l~---~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~~a 404 (962)
T COG0610 332 NDP----KAESTSELKELLE---DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKALKKA 404 (962)
T ss_pred CCC----CCCCHHHHHHHHH---CCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 044----4457999999986---589848999710264333333200047876799986401035607899999870367
Q ss_pred CCEEECHHHHHHHHHHH---HHHC-CCHHHHCCCCCCCCCCEEE--------E---------------------------
Q ss_conf 61010101322789999---7520-1011110235576662079--------9---------------------------
Q gi|254780945|r 422 HVLLMTATPIPRTLVLT---SLGD-IDISKITEKPAGRKPIKTV--------I--------------------------- 462 (700)
Q Consensus 422 h~L~MtATPIPRTLal~---~ygd-ldvS~i~e~P~gR~~I~T~--------~--------------------------- 462 (700)
T Consensus 405 ~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (962)
T COG0610 405 IFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKI 484 (962)
T ss_pred EEEEEECCCCCCCCCCCHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08975178564022420355517447998652232357633258403123453200124566666999842279999999
Q ss_pred -----------EECCCH----HHHHHHHHHHHCCCCEEEEEECCCC---CC------CCCCCCHHHH---HHHHHHHHCC
Q ss_conf -----------970200----2689999763103873899971201---22------1112101466---6666686637
Q gi|254780945|r 463 -----------IPINRI----DEVIERLKVVLSEGKKAYWICPQIE---EK------KESNFRSVVE---RFNSLHEHFT 515 (700)
Q Consensus 463 -----------~~~~~~----~~~~~~i~~~l~~g~q~y~VcPlIe---es------e~~~~~~~~~---~~~~l~~~~~ 515 (700)
T Consensus 485 ~k~~~~~~~~~~~~~r~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 564 (962)
T COG0610 485 KKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFE 564 (962)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99875556875144889999999999998611558359999841687877678887751556665300528999861322
Q ss_pred CCEECC--CCCCCHHHHHHHHHH-HHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCC---CC
Q ss_conf 103120--146998999999999-755986999980034104688876589985852547468877301166789---83
Q gi|254780945|r 516 SSIAII--HGRMSDIDKESVMDS-FKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE---EI 589 (700)
Q Consensus 516 ~~v~~l--HGkm~~~ek~~~m~~-F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~---~~ 589 (700)
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~TmYvDK~Lk~H--~L~QAisRtNR~~~~~K~ 642 (962)
T COG0610 565 TDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKPLKYH--NLIQAISRTNRVFPGKKK 642 (962)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC
T ss_conf 320234455777777653323212757787689997762046775420126744554433--189999886458878888
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 59999708889987999999998414
Q gi|254780945|r 590 SSCILLYHPPLSKNSYTRLSVLKNTE 615 (700)
Q Consensus 590 s~c~l~~~~~~~~~~~~Rl~~l~~~~ 615 (700)
T Consensus 643 ~G~IVDf~g-~~e~~~~Al~~y~~~~ 667 (962)
T COG0610 643 FGLIVDFRG-LKEALKKALKLYSNEG 667 (962)
T ss_pred CCEEEECCC-HHHHHHHHHHHHHHCC
T ss_conf 957997814-6999999999975135