HHsearch alignment for GI: 254780945 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.85 E-value=2.5e-18 Score=163.36 Aligned_cols=294 Identities=23% Similarity=0.309 Sum_probs=193.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 63024679889999999998410013430788621442236999999733444305458861279999999986211014
Q gi|254780945|r 267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ 346 (700)
Q Consensus 267 ~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~ 346 (700)
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHHHHHCC
T ss_conf 235788859999999999962225--7867999679998899999999982698---89997829999999999997348
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHCC----CCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 578658996246422566768776213475486411-12013----3455444417885210133568899874025677
Q gi|254780945|r 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQ----DSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAP 421 (700)
Q Consensus 347 ~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~q----~~v~F~~LgLvViDEQHRFGV~QR~~L~~Kg~~p 421 (700)
T Consensus 106 ~~-~~~g~~~~~~~~~~----------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~ 173 (442)
T COG1061 106 LN-DEIGIYGGGEKELE----------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA 173 (442)
T ss_pred CC-CCCCEECCCCCCCC----------C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 86-76603368723357----------7-748999838976415555403566675999752457847799999975103
Q ss_pred C-CEEECHHHHHHHHH-H--HHHHCC-----CHHHHCCCCCCCC-CCEEEEEEC--C-CHH-------------------
Q ss_conf 6-10101013227899-9--975201-----0111102355766-620799970--2-002-------------------
Q gi|254780945|r 422 H-VLLMTATPIPRTLV-L--TSLGDI-----DISKITEKPAGRK-PIKTVIIPI--N-RID------------------- 469 (700)
Q Consensus 422 h-~L~MtATPIPRTLa-l--~~ygdl-----dvS~i~e~P~gR~-~I~T~~~~~--~-~~~------------------- 469 (700)
T Consensus 174 ~~~LGLTATp~-R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPE-REDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred CEEEEEECCCC-CCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 10467714872-44877524877405755673358998337875774999986236628777403155555555543100
Q ss_pred ---------------HHHHHHHHHHC---CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC--CEECCCCCCCHHH
Q ss_conf ---------------68999976310---387389997120122111210146666666866371--0312014699899
Q gi|254780945|r 470 ---------------EVIERLKVVLS---EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDID 529 (700)
Q Consensus 470 ---------------~~~~~i~~~l~---~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~--~v~~lHGkm~~~e 529 (700)
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a------------~~i~~~~~~~~~~~~it~~t~~~e 320 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHA------------YEIAKLFLAPGIVEAITGETPKEE 320 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH------------HHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 13456777776642899999999987532688669997577999------------999998626774246657899889
Q ss_pred HHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCC-HHHHHHHHHCCCC-CCCCEEE
Q ss_conf 9999999755986999980034104688876589985852547-4688773011667-8983599
Q gi|254780945|r 530 KESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG-LAQLHQLRGRVGR-GEEISSC 592 (700)
Q Consensus 530 k~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfG-LsqLHQLRGRVGR-g~~~s~c 592 (700)
T Consensus 321 R~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~--t~S~~~~~Q~lGR~LR~~~~k~~~ 383 (442)
T COG1061 321 REAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP--TGSRRLFIQRLGRGLRPAEGKEDT 383 (442)
T ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCCCCCE
T ss_conf 999999987089529999614126657888757999779--987999999961663478899965