HHsearch alignment for GI: 254780945 and conserved domain: COG1110

>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=99.54  E-value=6.4e-12  Score=113.07  Aligned_cols=281  Identities=21%  Similarity=0.348  Sum_probs=197.8

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
Q ss_conf             78999986302467988999999999841001343078862144223699999973344430545886127999999998
Q gi|254780945|r  260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE  339 (700)
Q Consensus       260 ~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~  339 (700)
T Consensus        70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~--SFa----iiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~  143 (1187)
T COG1110          70 EFEEFFKKATGFRPWSAQRVWAKRLVRGK--SFA----IIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYE  143 (1187)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CEE----EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf             99999998638986078899999987378--448----982788765479999999987558749999667899999999


Q ss_pred             HHHHHCCCCC-CEEEE-EECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCC------CCCCCCCEEEECCCCCC-----
Q ss_conf             6211014578-65899-62464225667687762134754864111201334------55444417885210133-----
Q gi|254780945|r  340 FIKKYTQNTQ-IIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS------IQYYKLILVIVDEQHRF-----  406 (700)
Q Consensus       340 ~~~~~~~~~~-i~v~l-Ltg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~------v~F~~LgLvViDEQHRF-----  406 (700)
T Consensus       144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFd---fifVDDVDA~Lkask  220 (1187)
T COG1110         144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFD---FIFVDDVDAILKASK  220 (1187)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCC---EEEECCHHHHHHCCC
T ss_conf             99998865378524665312366577999999986599639997478788669984045777---899804788986344


Q ss_pred             ---------CHHH------------HHHHH---------------------HCCCCCCCEEECHHHHHHHHHHHHHHCC-
Q ss_conf             ---------5688------------99874---------------------0256776101010132278999975201-
Q gi|254780945|r  407 ---------GVQQ------------RLKLT---------------------QKATAPHVLLMTATPIPRTLVLTSLGDI-  443 (700)
Q Consensus       407 ---------GV~Q------------R~~L~---------------------~Kg~~ph~L~MtATPIPRTLal~~ygdl-  443 (700)
T Consensus       221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl  300 (1187)
T COG1110         221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL  300 (1187)
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             48889998088878888889999999986322367789999998888887750477369996055787774388999983


Q ss_pred             --CHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECC
Q ss_conf             --011110235576662079997020026899997631038738999712012211121014666666686637103120
Q gi|254780945|r  444 --DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII  521 (700)
Q Consensus       444 --dvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~l  521 (700)
T Consensus       301 gFevG~~~~~--LRNIvD~y~~~-~~~e~~~elv-k~lG~GgLIfV~-------~d~G~e~aeel~e~Lr~~-Gi~a~~~  368 (1187)
T COG1110         301 GFEVGSGGEG--LRNIVDIYVES-ESLEKVVELV-KKLGDGGLIFVP-------IDYGREKAEELAEYLRSH-GINAELI  368 (1187)
T ss_pred             CCCCCCCCHH--HHHEEEEECCC-CCHHHHHHHH-HHHCCCEEEEEE-------CHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf             9856764031--30004420368-6378899999-984897499997-------177389999999999866-9607986


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEC----HHHHCCCCCCCCCEEEEE
Q ss_conf             146998999999999755986999980----034104688876589985
Q gi|254780945|r  522 HGRMSDIDKESVMDSFKNGTCKLLIAT----TVIEVGIDVVDASIIIIE  566 (700)
Q Consensus       522 HGkm~~~ek~~~m~~F~~g~~~iLvaT----tviEVGvdvpna~~mvI~  566 (700)
T Consensus       369 ~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF  412 (1187)
T COG1110         369 HA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVF  412 (1187)
T ss_pred             EC-----CCHHHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEE
T ss_conf             23-----202245665067601799850213430224774345457899