HHsearch alignment for GI: 254780945 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=99.54 E-value=6.4e-12 Score=113.07 Aligned_cols=281 Identities=21% Similarity=0.348 Sum_probs=197.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
Q ss_conf 78999986302467988999999999841001343078862144223699999973344430545886127999999998
Q gi|254780945|r 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 (700)
Q Consensus 260 ~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~ 339 (700)
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~--SFa----iiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGK--SFA----IIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CEE----EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 99999998638986078899999987378--448----982788765479999999987558749999667899999999
Q ss_pred HHHHHCCCCC-CEEEE-EECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCC------CCCCCCCEEEECCCCCC-----
Q ss_conf 6211014578-65899-62464225667687762134754864111201334------55444417885210133-----
Q gi|254780945|r 340 FIKKYTQNTQ-IIVEI-ITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDS------IQYYKLILVIVDEQHRF----- 406 (700)
Q Consensus 340 ~~~~~~~~~~-i~v~l-Ltg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~------v~F~~LgLvViDEQHRF----- 406 (700)
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFd---fifVDDVDA~Lkask 220 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFD---FIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCC---EEEECCHHHHHHCCC
T ss_conf 99998865378524665312366577999999986599639997478788669984045777---899804788986344
Q ss_pred ---------CHHH------------HHHHH---------------------HCCCCCCCEEECHHHHHHHHHHHHHHCC-
Q ss_conf ---------5688------------99874---------------------0256776101010132278999975201-
Q gi|254780945|r 407 ---------GVQQ------------RLKLT---------------------QKATAPHVLLMTATPIPRTLVLTSLGDI- 443 (700)
Q Consensus 407 ---------GV~Q------------R~~L~---------------------~Kg~~ph~L~MtATPIPRTLal~~ygdl- 443 (700)
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 48889998088878888889999999986322367789999998888887750477369996055787774388999983
Q ss_pred --CHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECC
Q ss_conf --011110235576662079997020026899997631038738999712012211121014666666686637103120
Q gi|254780945|r 444 --DISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAII 521 (700)
Q Consensus 444 --dvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~l 521 (700)
T Consensus 301 gFevG~~~~~--LRNIvD~y~~~-~~~e~~~elv-k~lG~GgLIfV~-------~d~G~e~aeel~e~Lr~~-Gi~a~~~ 368 (1187)
T COG1110 301 GFEVGSGGEG--LRNIVDIYVES-ESLEKVVELV-KKLGDGGLIFVP-------IDYGREKAEELAEYLRSH-GINAELI 368 (1187)
T ss_pred CCCCCCCCHH--HHHEEEEECCC-CCHHHHHHHH-HHHCCCEEEEEE-------CHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 9856764031--30004420368-6378899999-984897499997-------177389999999999866-9607986
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEC----HHHHCCCCCCCCCEEEEE
Q ss_conf 146998999999999755986999980----034104688876589985
Q gi|254780945|r 522 HGRMSDIDKESVMDSFKNGTCKLLIAT----TVIEVGIDVVDASIIIIE 566 (700)
Q Consensus 522 HGkm~~~ek~~~m~~F~~g~~~iLvaT----tviEVGvdvpna~~mvI~ 566 (700)
T Consensus 369 ~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF 412 (1187)
T COG1110 369 HA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVF 412 (1187)
T ss_pred EC-----CCHHHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEE
T ss_conf 23-----202245665067601799850213430224774345457899