HHsearch alignment for GI: 254780945 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=97.20 E-value=0.0012 Score=48.12 Aligned_cols=370 Identities=20% Similarity=0.301 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHH
Q ss_conf 75789999863024679889999999998410013430788621442236999999733444305458861279999999
Q gi|254780945|r 258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH 337 (700)
Q Consensus 258 ~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH 337 (700)
T Consensus 289 rg~R~~LfReLlgFevG~~~~~LR-NIvD-~y~~~----------~~~e~~~elvk~-----lG~GgLIfV~~d~-G~e~ 350 (1187)
T COG1110 289 RGSRLKLFRELLGFEVGSGGEGLR-NIVD-IYVES----------ESLEKVVELVKK-----LGDGGLIFVPIDY-GREK 350 (1187)
T ss_pred CCCHHHHHHHHHCCCCCCCCHHHH-HEEE-EECCC----------CCHHHHHHHHHH-----HCCCEEEEEECHH-HHHH
T ss_conf 774388999983985676403130-0044-20368----------637889999998-----4897499997177-3899
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCC------CCHH-H
Q ss_conf 98621101457865899624642256676877621347548641112013345544441788521013------3568-8
Q gi|254780945|r 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHR------FGVQ-Q 410 (700)
Q Consensus 338 ~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHR------FGV~-Q 410 (700)
T Consensus 351 aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~GeidvLVGvAsyYG~lV-------RGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 351 AEELAEYLRSHGINAELIHA-----EKEEALEDFEEGEVDVLVGVASYYGVLV-------RGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred HHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHCCCCEEEEEEECCCCCCEE-------ECCCCHHHEEEEEEECCCCE
T ss_conf 99999999866960798623-----2022456650676017998502134302-------24774345457899558740
Q ss_pred HHHHHHCCCC--CCCEEECHHHHHHHHHHHHHHCC----------------CHHHHCCCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 9987402567--76101010132278999975201----------------01111023557666207999702002689
Q gi|254780945|r 411 RLKLTQKATA--PHVLLMTATPIPRTLVLTSLGDI----------------DISKITEKPAGRKPIKTVIIPINRIDEVI 472 (700)
Q Consensus 411 R~~L~~Kg~~--ph~L~MtATPIPRTLal~~ygdl----------------dvS~i~e~P~gR~~I~T~~~~~~~~~~~~ 472 (700)
T Consensus 419 rf~l~~~~~~~~~~l~~ls~~~-~~~~~~~~~~~~~rl~~~ir~~~~~~l~~~~~l~~~~----~~~~~~~--e~v~~~~ 491 (1187)
T COG1110 419 RFRLTLEESDPKRLLYLLSALS-DREARSRLEGLAGRLRRIIRRLSPYSLLKLMKLKKRP----DVDRHLA--EEVRTLA 491 (1187)
T ss_pred EEECCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC----CCCHHHH--HHHHHHH
T ss_conf 5640412366277898987510-4654246677789999998631598877489886445----7313679--9999999
Q ss_pred HHHHHHHC-------------------CCCEEEEEECCC----CCCCCC--------------CCCHHHHHHHHHHHHCC
Q ss_conf 99976310-------------------387389997120----122111--------------21014666666686637
Q gi|254780945|r 473 ERLKVVLS-------------------EGKKAYWICPQI----EEKKES--------------NFRSVVERFNSLHEHFT 515 (700)
Q Consensus 473 ~~i~~~l~-------------------~g~q~y~VcPlI----eese~~--------------~~~~~~~~~~~l~~~~~ 515 (700)
T Consensus 492 ~~~~e~L~~e~~~k~i~e~~~~vl~~~eg~~-yi~vPD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~~~f~~L~krm~ 570 (1187)
T COG1110 492 EFVRELLKDEERVKKIAESADLVLVYEEGEL-YLEVPDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDPEVFEGLIKRMS 570 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEEECCHHHHEECCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9999998778899865404736999427835-999557466310266176654266346228999568899999999998
Q ss_pred ---CCEECCCCCCCHHHHHH----------HHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHH-------HCCHHH
Q ss_conf ---10312014699899999----------9999755986999980034104688876589985852-------547468
Q gi|254780945|r 516 ---SSIAIIHGRMSDIDKES----------VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAE-------HFGLAQ 575 (700)
Q Consensus 516 ---~~v~~lHGkm~~~ek~~----------~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~ae-------rfGLsq 575 (700)
T Consensus 571 ~~~~e~e~k--~l~evdL~el~reIdEdR~~~r~~~~g~~--------~~~~~dlvkt~L~IVESPnKARTIA~FFgrPS 640 (1187)
T COG1110 571 WKFIEIEFK--EISEVDLEELLREIDEDRERVRRVLEGKL--------KEETKDLVKTALMIVESPNKARTIASFFGRPS 640 (1187)
T ss_pred HHHCCCCEE--ECCCCCHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHCEEEEEECCHHHHHHHHHHCCCC
T ss_conf 751234230--52114799999997766899988872431--------12333211015899967718889999848962
Q ss_pred HHHHHHCCCCCCCCEEEEEEECCCCC-------HHHHHHHHHHHHHCHHHHHHHHHHH--HCCCCCCCCCHHCCCCCCCC
Q ss_conf 87730116678983599997088899-------8799999999841425899999985--20630002600069874400
Q gi|254780945|r 576 LHQLRGRVGRGEEISSCILLYHPPLS-------KNSYTRLSVLKNTEDGFLIAEEDLK--QRKEGEILGIKQSGMPKFLI 646 (700)
Q Consensus 576 LHQLRGRVGRg~~~s~c~l~~~~~~~-------~~~~~Rl~~l~~~~dGf~iAe~Dl~--lRG~G~~~G~~QsG~~~~~~ 646 (700)
T Consensus 641 ~R~~~~~~vYEv~~gD~vL~ItAS~GHv~DLvt~~g~hG----vl~~~~~~vPvY~tIKrC~dcg~q~~~~~~~cP~Cgs 716 (1187)
T COG1110 641 VRRLGGGVVYEVAIGDLVLTITASGGHVFDLVTEPGVHG----VLVKDGKYVPVYDTIKRCRDCGEQFVDSEDKCPRCGS 716 (1187)
T ss_pred EEEECCEEEEEEECCCEEEEEEECCCEEEEEECCCCCCE----EECCCCCEEEHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 355479068999618758999953871688631465210----5605870686278888885158440443235988788
Q ss_pred CCHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCH
Q ss_conf 0388759999999999999----99848463665564
Q gi|254780945|r 647 AQPELHDSLLEIARKDAKH----ILTQDPDLTSVRGQ 679 (700)
Q Consensus 647 ~d~~~d~~ll~~a~~~a~~----~~~~d~~l~~~~~~ 679 (700)
T Consensus 717 ~~v~d~~~~ve~lRelA~EvDeVlIgTDPDtEGEKIa 753 (1187)
T COG1110 717 RNVEDKTETVEALRELALEVDEILIGTDPDTEGEKIA 753 (1187)
T ss_pred CCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
T ss_conf 3202407799999998865277998179987644257