HHsearch alignment for GI: 254780945 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.86 E-value=2.6e-18 Score=163.15 Aligned_cols=334 Identities=22% Similarity=0.282 Sum_probs=216.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-HHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 988999999999841001343078862144223699999973344-4305458861279999999986211014578658
Q gi|254780945|r 274 TKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 (700)
Q Consensus 274 T~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~-~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v 352 (700)
T Consensus 17 R~YQ~~i~a~al~~-------NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 17 RLYQLNIAAKALFK-------NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred HHHHHHHHHHHHHC-------CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHE
T ss_conf 89999999998644-------83899528750799999999999874588489965895179999999999858984332
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCC-----CCCCCCCCEEEECCCCCCCHHHH-----HHHHHCCCCCC
Q ss_conf 996246422566768776213475486411120133-----45544441788521013356889-----98740256776
Q gi|254780945|r 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHRFGVQQR-----LKLTQKATAPH 422 (700)
Q Consensus 353 ~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~-----~v~F~~LgLvViDEQHRFGV~QR-----~~L~~Kg~~ph 422 (700)
T Consensus 90 ~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 90 AALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred EEECCCCCHHHHHHHHH-----HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 31117778688999875-----1778995638777687617667678058986235541376069999999998256843
Q ss_pred CEEECHHHHHHHH-HHHHHHCCCHHHHCCCCCC-------CCCCEEEEEEC---CCHHHH-------HHHHHHHHCCCCE
Q ss_conf 1010101322789-9997520101111023557-------66620799970---200268-------9999763103873
Q gi|254780945|r 423 VLLMTATPIPRTL-VLTSLGDIDISKITEKPAG-------RKPIKTVIIPI---NRIDEV-------IERLKVVLSEGKK 484 (700)
Q Consensus 423 ~L~MtATPIPRTL-al~~ygdldvS~i~e~P~g-------R~~I~T~~~~~---~~~~~~-------~~~i~~~l~~g~q 484 (700)
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 79872389998799999998379542898457885177751404248996368589999999999999999999997695
Q ss_pred EEEEECCCC------------------CCCCC-------------------C----------------------------
Q ss_conf 899971201------------------22111-------------------2----------------------------
Q gi|254780945|r 485 AYWICPQIE------------------EKKES-------------------N---------------------------- 499 (700)
Q Consensus 485 ~y~VcPlIe------------------ese~~-------------------~---------------------------- 499 (700)
T Consensus 245 ~~~~~~-~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 245 IESSSP-VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 323573-1076899999989986357617888999999999888899999985086999999999998750352077898
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHCCCCEECCCC----
Q ss_conf ----------------------------------------------------101466666668663710312014----
Q gi|254780945|r 500 ----------------------------------------------------FRSVVERFNSLHEHFTSSIAIIHG---- 523 (700)
Q Consensus 500 ----------------------------------------------------~~~~~~~~~~l~~~~~~~v~~lHG---- 523 (700)
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 75382047999999974003688961899999999997238985599996147589999999985287520688611454
Q ss_pred ----CCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEE-EEEECC
Q ss_conf ----699899999999975598699998003410468887658998585254746887730116678983599-997088
Q gi|254780945|r 524 ----RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC-ILLYHP 598 (700)
Q Consensus 524 ----km~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c-~l~~~~ 598 (700)
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI-R~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI-RSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHHCCCCCC-CCCEEEEEEECC
T ss_conf 556665888999999998657851899812322467887656799956885788-999860744557-797499999658
Q ss_pred CCC----HHHHHHHHHHHHHCHHHHHHH
Q ss_conf 899----879999999984142589999
Q gi|254780945|r 599 PLS----KNSYTRLSVLKNTEDGFLIAE 622 (700)
Q Consensus 599 ~~~----~~~~~Rl~~l~~~~dGf~iAe 622 (700)
T Consensus 482 trdeayy~~s~rke~~m~e~i~~~~~~~ 509 (542)
T COG1111 482 TRDEAYYYSSRRKEQKMIESIRGLSLEL 509 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6278999999999999999999888762