HHsearch alignment for GI: 254780945 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=100.00 E-value=0 Score=981.72 Aligned_cols=415 Identities=34% Similarity=0.528 Sum_probs=389.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 77655554320357678775789999863024679889999999998410013430788621442236999999733444
Q gi|254780945|r 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 (700)
Q Consensus 240 l~~~r~~~~~~~~~~~~~~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~ 319 (700)
T Consensus 562 Li~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~ 641 (1139)
T COG1197 562 LIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM 641 (1139)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 99999987305687879985899999854998578789999999998860698661025657687599999999999863
Q ss_pred HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf 30545886127999999998621101457865899624642256676877621347548641112013345544441788
Q gi|254780945|r 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 (700)
Q Consensus 320 ~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV 399 (700)
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCEEECCCEEE
T ss_conf 79749999260786899899999873389825888605578899999999985698458996317647896770476489
Q ss_pred ECCCCCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 52101335688998740256776101010132278999975201011110235576662079997020026899997631
Q gi|254780945|r 400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL 479 (700)
Q Consensus 400 iDEQHRFGV~QR~~L~~Kg~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l 479 (700)
T Consensus 722 IDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~-~~ireAI~REl 800 (1139)
T COG1197 722 IDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD-LLIREAILREL 800 (1139)
T ss_pred EECHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCCCCCCCCEEEEEECCCH-HHHHHHHHHHH
T ss_conf 74435327117899987750572897417887544777774430331114799877212888715882-89999999987
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCC
Q ss_conf 0387389997120122111210146666666866371-031201469989999999997559869999800341046888
Q gi|254780945|r 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV 558 (700)
Q Consensus 480 ~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvp 558 (700)
T Consensus 801 ~RgGQvfYv~NrV~--------~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 801 LRGGQVFYVHNRVE--------SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HCCCEEEEEECCCC--------CHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf 15987999943331--------2999999999859846888852588889999999999728888898823430476777
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHCH---HHHHHHHHHHHCCCCCC
Q ss_conf 7658998585254746887730116678983599997088--899879999999984142---58999999852063000
Q gi|254780945|r 559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI 633 (700)
Q Consensus 559 na~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~--~~~~~~~~Rl~~l~~~~d---Gf~iAe~Dl~lRG~G~~ 633 (700)
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNl 952 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNL 952 (1139)
T ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHCCCCCCC
T ss_conf 87558896543345788887516547767628999962675545878999999997233237517887520100454134
Q ss_pred CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 26000698744000388759999999999999
Q gi|254780945|r 634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAKH 665 (700)
Q Consensus 634 ~G~~QsG~~~~~~~d~~~d~~ll~~a~~~a~~ 665 (700)
T Consensus 953 LG~eQSG~I~~VGf~LY--~~mLeeAI~~lk~ 982 (1139)
T COG1197 953 LGEEQSGHIESVGFDLY--MEMLEEAIAALKG 982 (1139)
T ss_pred CCCCCCCCHHEECHHHH--HHHHHHHHHHHHC
T ss_conf 67545676101229999--9999999998736