HHsearch alignment for GI: 254780945 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.1e-32 Score=275.86 Aligned_cols=393 Identities=24% Similarity=0.349 Sum_probs=292.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHH-HHHHHHHHHHHHCCC
Q ss_conf 0246798899999999984100134307886214422369999997334443054588612799-999999862110145
Q gi|254780945|r 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI-LAQQHYEFIKKYTQN 347 (700)
Q Consensus 269 LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEI-LA~QH~~~~~~~~~~ 347 (700)
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~~~~~--~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVP-EI~Ltpq~~~rf~~rFg- 270 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSLGGFA--PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVP-EIALTPQLLARFKARFG- 270 (730)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHHHHC-
T ss_conf 311038899999999997505666--53676777885899999999999975987999956-53456999999999867-
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHCCCCCCCCCCCEEEECCCCCCCHHH----------HHHHHH
Q ss_conf 78658996246422566768776213475486411-1201334554444178852101335688----------998740
Q gi|254780945|r 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSIQYYKLILVIVDEQHRFGVQQ----------RLKLTQ 416 (700)
Q Consensus 348 ~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~q~~v~F~~LgLvViDEQHRFGV~Q----------R~~L~~ 416 (700)
T Consensus 271 --~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF---~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 271 --AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF---LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred --CCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC---CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf --87453146579278999999985597159997122330---7231257699702456432477777767899999998
Q ss_pred CCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCC----H-----HHHHHHHHHHHCCCCEEEE
Q ss_conf 256776101010132278999975201011110235576662079997020----0-----2689999763103873899
Q gi|254780945|r 417 KATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR----I-----DEVIERLKVVLSEGKKAYW 487 (700)
Q Consensus 417 Kg~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~----~-----~~~~~~i~~~l~~g~q~y~ 487 (700)
T Consensus 346 ~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ll 425 (730)
T COG1198 346 KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLL 425 (730)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 86099889826887789998665385589970354555678762587356665546775799999999999842986899
Q ss_pred EECC--------------------CC------------------------------CCCCCC--CCHHHHHHHHHHHHCC
Q ss_conf 9712--------------------01------------------------------221112--1014666666686637
Q gi|254780945|r 488 ICPQ--------------------IE------------------------------EKKESN--FRSVVERFNSLHEHFT 515 (700)
Q Consensus 488 VcPl--------------------Ie------------------------------ese~~~--~~~~~~~~~~l~~~~~ 515 (700)
T Consensus 426 flnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP 505 (730)
T COG1198 426 FLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP 505 (730)
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf 97167765400425689802489999512786479806707799989988779899997369964619999999998789
Q ss_pred C-CEECCCCCCCH--HHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHH-C----------CHHHHHHHHH
Q ss_conf 1-03120146998--9999999997559869999800341046888765899858525-4----------7468877301
Q gi|254780945|r 516 S-SIAIIHGRMSD--IDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-F----------GLAQLHQLRG 581 (700)
Q Consensus 516 ~-~v~~lHGkm~~--~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aer-f----------GLsqLHQLRG 581 (700)
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaG 585 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99479984666664356899999975799886634166642788666318999963143158884357899999999975
Q ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC-CHH----HHHHHH
Q ss_conf 166789835999970888998799999999841425899999985206300026000698744000-388----759999
Q gi|254780945|r 582 RVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIA-QPE----LHDSLL 656 (700)
Q Consensus 582 RVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~QsG~~~~~~~-d~~----~d~~ll 656 (700)
T Consensus 586 RAgR~~~~G~VvIQT~~P-~hp~i~--~~~~~dy~~F--~~~El~~R--------k~~~~PPf~~l~~v~~~~~~~~~~~ 652 (730)
T COG1198 586 RAGRAGKPGEVVIQTYNP-DHPAIQ--ALKRGDYEAF--YEQELAER--------KELGLPPFSRLAAVIASAKNEEKAL 652 (730)
T ss_pred HHCCCCCCCEEEEEECCC-CCHHHH--HHHHCCHHHH--HHHHHHHH--------HHCCCCCHHHHEEEEECCCCHHHHH
T ss_conf 532678898699996799-857999--9986699999--99999988--------8618997065446673378989999
Q ss_pred HHHHHHH---HHHHHHCCCCCCCCCHHHHH
Q ss_conf 9999999---99998484636655648899
Q gi|254780945|r 657 EIARKDA---KHILTQDPDLTSVRGQSIRI 683 (700)
Q Consensus 657 ~~a~~~a---~~~~~~d~~l~~~~~~~l~~ 683 (700)
T Consensus 653 ~~~~~~~~~l~~~~~~~~~vLGP~~a~~~r 682 (730)
T COG1198 653 EFARALRELLKEALPVDVEVLGPAPAPLAK 682 (730)
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCHHHH
T ss_conf 999999999986275565046887562677