HHsearch alignment for GI: 254780945 and conserved domain: COG1199
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].
Probab=96.50 E-value=0.012 Score=40.48 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=99.1
Q ss_pred CCCCEEECHHHHHHHHHHHHHHCCCHHHHC-----CCCCCCC-----CCEEEEEEC---CCHHHHHHHHHHHHCC-CCEE
Q ss_conf 776101010132278999975201011110-----2355766-----620799970---2002689999763103-8738
Q gi|254780945|r 420 APHVLLMTATPIPRTLVLTSLGDIDISKIT-----EKPAGRK-----PIKTVIIPI---NRIDEVIERLKVVLSE-GKKA 485 (700)
Q Consensus 420 ~ph~L~MtATPIPRTLal~~ygdldvS~i~-----e~P~gR~-----~I~T~~~~~---~~~~~~~~~i~~~l~~-g~q~ 485 (700)
T Consensus 403 ~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 482 (654)
T COG1199 403 VASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPGGV 482 (654)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 57599982776843559998602565312302147998676553114134445788874799999999999997479988
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCE-EEEEECHHHHCCCCCCCCCE--
Q ss_conf 999712012211121014666666686637103120146998999999999755986-99998003410468887658--
Q gi|254780945|r 486 YWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTC-KLLIATTVIEVGIDVVDASI-- 562 (700)
Q Consensus 486 y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~-~iLvaTtviEVGvdvpna~~-- 562 (700)
T Consensus 483 lvlF~Sy~--------~l~~~~~~~~~~~~~---~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 483 LVLFPSYE--------YLKRVAERLKDERST---LPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred EEEECCHH--------HHHHHHHHHHHCCCC---CEEECCCCCCHHHHHHHHHHCCCCEEEEEECCEECCEECCCCCEEE
T ss_conf 99917899--------999999986511645---3344568784699999997147864999723310315168876579
Q ss_pred EEE-----------------ECHHHCC------------HHHHHHHHHCCCCC-CCCEEEEEEECCCCC
Q ss_conf 998-----------------5852547------------46887730116678-983599997088899
Q gi|254780945|r 563 III-----------------ENAEHFG------------LAQLHQLRGRVGRG-EEISSCILLYHPPLS 601 (700)
Q Consensus 563 mvI-----------------~~aerfG------------LsqLHQLRGRVGRg-~~~s~c~l~~~~~~~ 601 (700)
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll-D~R~~ 619 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL-DKRYA 619 (654)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCC
T ss_conf 999826899899899999999998726997103458999999998743010478871699997-15332