HHsearch alignment for GI: 254780945 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=100.00 E-value=0 Score=1842.93 Aligned_cols=660 Identities=47% Similarity=0.780 Sum_probs=644.1
Q ss_pred CCCCHHCHHCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEEEE
Q ss_conf 97102021017721367858899999887401246885548987870897401344446478889987899999998975
Q gi|254780945|r 1 MRPSFLNPLFAPLSTFRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHS 80 (700)
Q Consensus 1 mrp~~l~~L~~pI~~LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr~~~~~I~~l~~g~~vti~g~V~~~~ 80 (700)
T Consensus 1 ~~~~~~~~-~~~l~~l~gig~~~a~~l~~L------gi~tv~DLL~~~P~~YeD~~~~~~i~~~~~g~~vti~g~V~~~~ 73 (677)
T COG1200 1 MMLSLLDP-FVPLSTLKGIGPKTAEKLKKL------GIHTVQDLLLYLPRRYEDRTLLPGIAEARPGEIVTIEGTVLSHE 73 (677)
T ss_pred CCCCCCCC-CCCHHHHCCCCHHHHHHHHHC------CCCCHHHHHHHCCCCHHHCCCCCCHHHCCCCCEEEEEEEEEEEE
T ss_conf 97331356-543255238687789999871------98759999986862142146567843537786699999997640
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCC
Q ss_conf 42158983389999818936999995188789987328988899998997318779997786896264334444411000
Q gi|254780945|r 81 SFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVY 160 (700)
Q Consensus 81 ~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~vsGKv~~~~~~~qi~hPe~~~~~~~~~~~~~I~PIY 160 (700)
T Consensus 74 ~~~~~~~~~l~v~~~d~~~~l~l~fFn~~-~~l~~~~~~G~~v~v~Gk~~~~~~~~~~~hpe~~~~~~~~~~~~~i~PvY 152 (677)
T COG1200 74 KFPFGKRKLLKVTLSDGTGVLTLVFFNFP-AYLKKKLKVGERVIVYGKVKRFKGGLQITHPEYIVNDDGSELEERLTPVY 152 (677)
T ss_pred CCCCCCCCEEEEEEECCCEEEEEEEECCC-HHHHHHCCCCCEEEEEEEEEECCCCEEEECCEEEECCCCCCCCCCEEEEE
T ss_conf 25778873499999629689999997866-88884187998899999895036835887666783278765556235511
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000004543001345787404-68433897786205699988999862045896565667999999987666666677
Q gi|254780945|r 161 SLPTGLSVDLFKKIIVEALSRLP-VLPEWIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIA 239 (700)
Q Consensus 161 plt~GLsqk~irk~I~~aL~~~~-~i~E~LP~~ll~k~~L~s~~eAL~~IH~P~~~~dle~~~~ArkRLafeELl~~QL~ 239 (700)
T Consensus 153 ~~t~gl~~~~lrk~i~~aL~~~~~~l~e~lp~~l~~k~~l~~~~~al~~lH~P~~~~~~~---~~~rRL~f~Ell~~ql~ 229 (677)
T COG1200 153 PLTEGLKQKTLRKLIQQALEVLPSELEELLPEELLEKYGLPSLDEALRTLHFPKDEEDLK---RARRRLAFEELLALQLS 229 (677)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 101354879999999999985154303347788986306854999998655999777899---99876789999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 77655554320357678775789999863024679889999999998410013430788621442236999999733444
Q gi|254780945|r 240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE 319 (700)
Q Consensus 240 l~~~r~~~~~~~~~~~~~~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~ 319 (700)
T Consensus 230 l~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~ 309 (677)
T COG1200 230 LLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE 309 (677)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999987522688888647999999985899767899999999986644866667875267677789999999999987
Q ss_pred HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf 30545886127999999998621101457865899624642256676877621347548641112013345544441788
Q gi|254780945|r 320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 (700)
Q Consensus 320 ~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV 399 (700)
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEEEE
T ss_conf 28816886637999999999999876651974898644665067999999874799897997221220450442023899
Q ss_pred ECCCCCCCHHHHHHHHHCCC-CCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 52101335688998740256-77610101013227899997520101111023557666207999702002689999763
Q gi|254780945|r 400 VDEQHRFGVQQRLKLTQKAT-APHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVV 478 (700)
Q Consensus 400 iDEQHRFGV~QR~~L~~Kg~-~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~ 478 (700)
T Consensus 390 iDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~e 469 (677)
T COG1200 390 IDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREE 469 (677)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 72521022999999997378999679995798507889888614630111257989974089996444479999999999
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
Q ss_conf 10387389997120122111210146666666866371-03120146998999999999755986999980034104688
Q gi|254780945|r 479 LSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 (700)
Q Consensus 479 l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdv 557 (700)
T Consensus 470 i~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdV 549 (677)
T COG1200 470 IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDV 549 (677)
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
T ss_conf 97499799995253543311365499999999987054636777568986779999999980887689981389952357
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 87658998585254746887730116678983599997088899879999999984142589999998520630002600
Q gi|254780945|r 558 VDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIK 637 (700)
Q Consensus 558 pna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~ 637 (700)
T Consensus 550 PnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRGpGe~lG~r 629 (677)
T COG1200 550 PNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRGPGELLGTR 629 (677)
T ss_pred CCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCC
T ss_conf 88707999654330378888752655788754489999679877568999998874487601046567413886546875
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0698744000388759999999999999998484
Q gi|254780945|r 638 QSGMPKFLIAQPELHDSLLEIARKDAKHILTQDP 671 (700)
Q Consensus 638 QsG~~~~~~~d~~~d~~ll~~a~~~a~~~~~~d~ 671 (700)
T Consensus 630 QSG~~~f~~Adl~~D~~ile~ar~~a~~~~~~~~ 663 (677)
T COG1200 630 QSGLPEFRVADLVRDYDILEEARKDAAKLLSRDP 663 (677)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5688654773087569999999999999976184