HHsearch alignment for GI: 254780945 and conserved domain: COG1205
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only].
Probab=99.82 E-value=1.3e-16 Score=149.76 Aligned_cols=326 Identities=18% Similarity=0.217 Sum_probs=249.6
Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCE--EEEEHHHHH
Q ss_conf 877578999986302467988999999999841001343078862144223699999973344430545--886127999
Q gi|254780945|r 256 NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQA--VIMAPIGIL 333 (700)
Q Consensus 256 ~~~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~--alMaPTEIL 333 (700)
T Consensus 54 ~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G------~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnAL 127 (851)
T COG1205 54 LRDESLKSALVKAGIERLYSHQVDALRLIREG------RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNAL 127 (851)
T ss_pred HCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHH
T ss_conf 20037889999743442007799999999779------988997899885458989999999830866508998043776
Q ss_pred HHHHHHHHHHHCCCCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC----HH-HC----CCCCCCCCCCEEEECC
Q ss_conf 9999986211014578--658996246422566768776213475486411----12-01----3345544441788521
Q gi|254780945|r 334 AQQHYEFIKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HA-LF----QDSIQYYKLILVIVDE 402 (700)
Q Consensus 334 A~QH~~~~~~~~~~~~--i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT----HA-L~----q~~v~F~~LgLvViDE 402 (700)
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR----NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH----CCCCEEEECHHHHHHHHHCCCCCHHHHHHCCCEEEEEC
T ss_conf 76699999999984787513544348896788899873----89978983889998986368822788873275899844
Q ss_pred CC----CCCHHH-----HHHHHH--CCCCCCCEEECHHH-HHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEC-----
Q ss_conf 01----335688-----998740--25677610101013-22789999752010111102355766620799970-----
Q gi|254780945|r 403 QH----RFGVQQ-----RLKLTQ--KATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----- 465 (700)
Q Consensus 403 QH----RFGV~Q-----R~~L~~--Kg~~ph~L~MtATP-IPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~----- 465 (700)
T Consensus 204 lHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 204 LHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIREL 283 (851)
T ss_pred CEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCHHH
T ss_conf 41215603788999999999997245899628998312468288999862872146314788887874899856851133
Q ss_pred ------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH-------HCCCCEECCCCCCCHHHHHH
Q ss_conf ------20026899997631038738999712012211121014666666686-------63710312014699899999
Q gi|254780945|r 466 ------NRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHE-------HFTSSIAIIHGRMSDIDKES 532 (700)
Q Consensus 466 ------~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~-------~~~~~v~~lHGkm~~~ek~~ 532 (700)
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~s----r----~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ 355 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRS----R----KQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRR 355 (851)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEH----H----HHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHH
T ss_conf 22112345779999999998769659999835----7----567887541578875406010331342336699999999
Q ss_pred HHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 9999755986999980034104688876589985852547468877301166789835999970888
Q gi|254780945|r 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 (700)
Q Consensus 533 ~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~ 599 (700)
T Consensus 356 ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 356 IEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHHHHCCCCCEEEECHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 9999746884178612101226567021145304889702888988611035887875379983788