HHsearch alignment for GI: 254780945 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=95.47 E-value=0.27 Score=29.80 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCHHHCCCCCE-EEEEEEEEEEEEECCC-CCCEEEEEEECCCCEEEEEEECCC--HHHHHHHCCCCCEEE
Q ss_conf 974013444464788899878-9999999897542158-983389999818936999995188--789987328988899
Q gi|254780945|r 49 PSSFIDRHYRPKISEISEERI-VTITGYISQHSSFQLQ-KRRPYKILLNDGTGEITLLFFYRK--TEMLKNVFFEGRKIT 124 (700)
Q Consensus 49 PrrYeDr~~~~~I~~l~~g~~-vti~g~V~~~~~~~~~-~r~~~~v~v~D~tg~i~lvfFn~~--~~yl~k~lk~G~~v~ 124 (700)
T Consensus 220 ~~~i~~~~~i~~~~~i~~~~~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~ed~~~~~~ik~g~wvk 299 (1444)
T COG2176 220 GRKIKSTEEIKPLIKINEEETRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDEEDEKKFDGIKKGMWVK 299 (1444)
T ss_pred CEECCCCCCEEEHHHCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCHHEEEHHHCCCCCCHHHHHHCCCCCEEE
T ss_conf 33235766501546403311105899999887643224686799999862710032021226663188886233384799
Q ss_pred EEEEEEEC--CCEEEEECCE
Q ss_conf 99899731--8779997786
Q gi|254780945|r 125 VTGKIKKL--KNRIIMVHPH 142 (700)
Q Consensus 125 vsGKv~~~--~~~~qi~hPe 142 (700)
T Consensus 300 ~~g~v~~d~f~~~l~m~i~~ 319 (1444)
T COG2176 300 ARGNVQLDTFTRDLTMIIND 319 (1444)
T ss_pred EEEEEEECCCCCCEEEEHHH
T ss_conf 99788733555551787533