HHsearch alignment for GI: 254780945 and conserved domain: COG3973
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=94.44 E-value=0.085 Score=33.69 Aligned_cols=368 Identities=16% Similarity=0.152 Sum_probs=180.6
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH------HHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCE-EEE
Q ss_conf 999984100134307886214422369999997334------4430545886127999999998621101457865-899
Q gi|254780945|r 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAA------VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII-VEI 354 (700)
Q Consensus 282 ~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~------~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~-v~l 354 (700)
T Consensus 218 neIIR~e-k~~il--VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFle----Yis~VLPeLGe~~V~q 290 (747)
T COG3973 218 NEIIRFE-KNKIL--VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLE----YISRVLPELGEEGVVQ 290 (747)
T ss_pred HHHHHCC-CCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHH----HHHHHCHHHCCCCEEE
T ss_conf 7787555-78748--995588887135889999999853566246686599828389999----9987554416686365
Q ss_pred EE---------C-CCCHHHHHHHHHHHCCCCCEEEEECH-----HHCCCCCCCCCCCEEEECCCCCCCH---HHHHHHHH
Q ss_conf 62---------4-64225667687762134754864111-----2013345544441788521013356---88998740
Q gi|254780945|r 355 IT---------G-NMPQAHRRKALERIAHGQAHIIIGTH-----ALFQDSIQYYKLILVIVDEQHRFGV---QQRLKLTQ 416 (700)
Q Consensus 355 Lt---------g-~~~~~er~~i~~~i~~G~~~iiIGTH-----AL~q~~v~F~~LgLvViDEQHRFGV---~QR~~L~~ 416 (700)
T Consensus 291 ~Tf~e~a~~iLg~~s~d~~lt~~~~e~~~~d~~~~~a~~a~k~~~~~~~---~i~~~v~~is~e~~v~k~i~~~~~~~~s 367 (747)
T COG3973 291 ETFEEWALAILGLKSEDLELTRRTLEKLLMDTDLGIAALAWKRSLLFGD---AIDLDVVRISLEKKVGKDITGAGLQLNS 367 (747)
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0499988876188971157899987654145077787777630257899---9987765455532267776643477764
Q ss_pred CCCCC--CCEEECHHHHHHHHHHH---HHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 25677--61010101322789999---75201011110235576662079997020026899997631038738999712
Q gi|254780945|r 417 KATAP--HVLLMTATPIPRTLVLT---SLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQ 491 (700)
Q Consensus 417 Kg~~p--h~L~MtATPIPRTLal~---~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPl 491 (700)
T Consensus 368 k~eir~lF~e~l~~~~l~~r~~~i~~~~~~~ln~l~~~~----~dk~-~~~~~~~~~q~~~ed~v~rlr~~----~~l~e 438 (747)
T COG3973 368 KVEIRGLFTESLSESPLADRLHDIFAQDLLKLNDLSAAI----RDKL-DDLLDIAFRQKVYEDAVKRLRPQ----DVLPE 438 (747)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHCCC----CCCCH
T ss_conf 788899999876329577788888631542012456666----5434-46777998888899999863210----35767
Q ss_pred CCCCCCCCCCHHHHHH---------HHHHHHCCCC---EECCCCCCCHHHHHHHHHHHHCCCEE-EEEE---------CH
Q ss_conf 0122111210146666---------6668663710---31201469989999999997559869-9998---------00
Q gi|254780945|r 492 IEEKKESNFRSVVERF---------NSLHEHFTSS---IAIIHGRMSDIDKESVMDSFKNGTCK-LLIA---------TT 549 (700)
Q Consensus 492 Ieese~~~~~~~~~~~---------~~l~~~~~~~---v~~lHGkm~~~ek~~~m~~F~~g~~~-iLva---------Tt 549 (700)
T Consensus 439 e~~n~~~~~vaa~~y~e~~k~~~l~~~L~r~~~s~~~~~el~~g~~~~e~~r~~ge~~~~~~~d~~l~~dD~a~~lyikd 518 (747)
T COG3973 439 EEENSVRINVAAANYDEAQKSLKLRVLLDRFFASTTPLTELRRGLADAEALRAIGEAKWREQIDKALLSDDVAPRLYIKD 518 (747)
T ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 66655312255534677740400889988653123167898647878899987303544432100000211435665013
Q ss_pred HHHCCCCCCCCCEEEEECHHH---CCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 341046888765899858525---47468877301166789835999970888998799999999841425899999985
Q gi|254780945|r 550 VIEVGIDVVDASIIIIENAEH---FGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLK 626 (700)
Q Consensus 550 viEVGvdvpna~~mvI~~aer---fGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl~ 626 (700)
T Consensus 519 ~ldG~k~~~~~kh~vIDeaqdys~~q~~~~r~l~~~as~tivgd~gq~i~~~~~e~~~~e~~~~~fed~~-~e~v~l~~s 597 (747)
T COG3973 519 PLDGIKTERRLKHTVIDEAQDYSRFQFTDNRTLAERASMTIVGDYGQVIYDEAQELSPMERMDVFFEDPS-FEYVGLIAS 597 (747)
T ss_pred CCCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHHCCCEEECCCCCEEHHHHCCCCHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 2346655420332255134433402458876443203644762478553220122687999888872897-054324565
Q ss_pred HCCCCCCCCCHHCCCC-CCCCCCHHH------------HHHHHHHHHHHHHHHHHH
Q ss_conf 2063000260006987-440003887------------599999999999999984
Q gi|254780945|r 627 QRKEGEILGIKQSGMP-KFLIAQPEL------------HDSLLEIARKDAKHILTQ 669 (700)
Q Consensus 627 lRG~G~~~G~~QsG~~-~~~~~d~~~------------d~~ll~~a~~~a~~~~~~ 669 (700)
T Consensus 598 yrSt~eI~efan~~l~d~~~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~ 653 (747)
T COG3973 598 YRSTAEIDEFANSLLPDRFRIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKR 653 (747)
T ss_pred HCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 25858899999986327776661211788762211113398987507788888752