HHsearch alignment for GI: 254780945 and conserved domain: COG4085

>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only].
Probab=94.95  E-value=0.29  Score=29.44  Aligned_cols=73  Identities=26%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHHHH-----HHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf             99878999999989754215898338999981893699999518878998-----7328988899998997318779997
Q gi|254780945|r   65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK-----NVFFEGRKITVTGKIKKLKNRIIMV  139 (700)
Q Consensus        65 ~~g~~vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~~yl~-----k~lk~G~~v~vsGKv~~~~~~~qi~  139 (700)
T Consensus        49 ~l~e~v~vkg~V~~~~n~--~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~~eVk  126 (204)
T COG4085          49 RLNEEVTVKGEVTADQNA--IGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGSSEVK  126 (204)
T ss_pred             EEECCCEEEEEEEEEECC--CCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEE
T ss_conf             120253221489753101--236659999977987489999067367686447887322675899988887717973031