HHsearch alignment for GI: 254780945 and conserved domain: COG4085
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only].
Probab=94.95 E-value=0.29 Score=29.44 Aligned_cols=73 Identities=26% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHHHH-----HHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 99878999999989754215898338999981893699999518878998-----7328988899998997318779997
Q gi|254780945|r 65 SEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLK-----NVFFEGRKITVTGKIKKLKNRIIMV 139 (700)
Q Consensus 65 ~~g~~vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~~yl~-----k~lk~G~~v~vsGKv~~~~~~~qi~ 139 (700)
T Consensus 49 ~l~e~v~vkg~V~~~~n~--~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~~eVk 126 (204)
T COG4085 49 RLNEEVTVKGEVTADQNA--IGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGSSEVK 126 (204)
T ss_pred EEECCCEEEEEEEEEECC--CCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEE
T ss_conf 120253221489753101--236659999977987489999067367686447887322675899988887717973031