HHsearch alignment for GI: 254780945 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.89 E-value=4.4e-20 Score=177.10 Aligned_cols=299 Identities=24% Similarity=0.394 Sum_probs=228.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 46798899999999984100134307886214422369999997334443054588612799999999862110145786
Q gi|254780945|r 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 (700)
Q Consensus 271 F~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i 350 (700)
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~--lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDT--LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCC--C
T ss_conf 532724789999999998715768--999742798510169999999965986998468610117778999976214--9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHCCCCCCCCCCCEEEECCCCCCCHH--HHHHHHHC-C--CCCCCE
Q ss_conf 58996246422566768776213475486411-120133455444417885210133568--89987402-5--677610
Q gi|254780945|r 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSIQYYKLILVIVDEQHRFGVQ--QRLKLTQK-A--TAPHVL 424 (700)
Q Consensus 351 ~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~q~~v~F~~LgLvViDEQHRFGV~--QR~~L~~K-g--~~ph~L 424 (700)
T Consensus 172 ~I~~Lyg~S~~~f-----------r~plvVaTtHQLlrFk~aF---D~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF-----------RAPLVVATTHQLLRFKQAF---DLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CEEEEECCCCHHC-----------CCCEEEEEHHHHHHHHHHC---CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 8666725871313-----------3447997668888888643---3899830245656678889999997512367369
Q ss_pred EECHHHHHHHHH-HHHHHCCCHHHHCCCCCCCC-CC-EEEEEECCC-------H-HHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 101013227899-99752010111102355766-62-079997020-------0-2689999763103873899971201
Q gi|254780945|r 425 LMTATPIPRTLV-LTSLGDIDISKITEKPAGRK-PI-KTVIIPINR-------I-DEVIERLKVVLSEGKKAYWICPQIE 493 (700)
Q Consensus 425 ~MtATPIPRTLa-l~~ygdldvS~i~e~P~gR~-~I-~T~~~~~~~-------~-~~~~~~i~~~l~~g~q~y~VcPlIe 493 (700)
T Consensus 238 ylTATp-~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 238 YLTATP-TKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred EEECCC-HHHHHHHHHHCCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 996488-0788887540775676344654389989874288644777766444778999999998743882899925058
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHH-C
Q ss_conf 22111210146666666866371-031201469989999999997559869999800341046888765899858525-4
Q gi|254780945|r 494 EKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEH-F 571 (700)
Q Consensus 494 ese~~~~~~~~~~~~~l~~~~~~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aer-f 571 (700)
T Consensus 317 --------~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 317 --------TMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred --------HHHHHHHHHHHHCCCCCEEEEECC--CCCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCCCC
T ss_conf --------899999999861886421565336--7017899999875863899984403326643562399954776420
Q ss_pred CHHHHHHHHHCCCCCCCC---EEEEEEECC
Q ss_conf 746887730116678983---599997088
Q gi|254780945|r 572 GLAQLHQLRGRVGRGEEI---SSCILLYHP 598 (700)
Q Consensus 572 GLsqLHQLRGRVGRg~~~---s~c~l~~~~ 598 (700)
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 188999975231678768987589996463