HHsearch alignment for GI: 254780945 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=99.54 E-value=1.6e-12 Score=117.77 Aligned_cols=318 Identities=21% Similarity=0.304 Sum_probs=209.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHH
Q ss_conf 99998630246798899999999984100134307886214422369999997334443054588612799999999862
Q gi|254780945|r 262 AQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFI 341 (700)
Q Consensus 262 ~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~ 341 (700)
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~e------sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGE------SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHCCC------CEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 683787489896789999999984799------57997337898555999999999871894486163066420679999
Q ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHC-----CCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 110145786589962464225667687762134754864111201-----334554444178852101335688998740
Q gi|254780945|r 342 KKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHRFGVQQRLKLTQ 416 (700)
Q Consensus 342 ~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~-----q~~v~F~~LgLvViDEQHRFGV~QR~~L~~ 416 (700)
T Consensus 183 ~~~fgdv~~~vGL~TGDv~I-----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 183 LAKFGDVADMVGLMTGDVSI-----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHHHHCCCEECCEEE-----------CCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHH
T ss_conf 99860056540401054342-----------7999668860999999862586101353068887666504632212578
Q ss_pred C-----CCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCC------CCC-CCEEEEEECCC--------HH---H---
Q ss_conf 2-----567761010101322789999752010111102355------766-62079997020--------02---6---
Q gi|254780945|r 417 K-----ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA------GRK-PIKTVIIPINR--------ID---E--- 470 (700)
Q Consensus 417 K-----g~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~------gR~-~I~T~~~~~~~--------~~---~--- 470 (700)
T Consensus 252 E~Ii~lP~~v~~v~LSAT-v~N~~EF~~W----i~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 252 EVIILLPDHVRFVFLSAT-VPNAEEFAEW----IQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred HHHHHCCCCCCEEEEECC-CCCHHHHHHH----HHHCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCHHHCCH
T ss_conf 999866777768999678-8987999999----97403787489950688897179886587514535456530111343
Q ss_pred -HHHHHH------HHHCCCCEEEE------------E----------------ECCCCCC-------------CCCCCCH
Q ss_conf -899997------63103873899------------9----------------7120122-------------1112101
Q gi|254780945|r 471 -VIERLK------VVLSEGKKAYW------------I----------------CPQIEEK-------------KESNFRS 502 (700)
Q Consensus 471 -~~~~i~------~~l~~g~q~y~------------V----------------cPlIees-------------e~~~~~~ 502 (700)
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred HHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCC
T ss_conf 34334302200013567654321233334567766565530577766544037852899973651899998750364215
Q ss_pred HHH-------------------------HHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
Q ss_conf 466-------------------------6666686637103120146998999999999755986999980034104688
Q gi|254780945|r 503 VVE-------------------------RFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 (700)
Q Consensus 503 ~~~-------------------------~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdv 557 (700)
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCC
T ss_conf 88278889999999985347202127500999999876034540245036899999999860430577533346401578
Q ss_pred CCCCEEEE----EC--HHHC-CHHHHHHHHHCCCCCCC--CEEEEEEECCCCC
Q ss_conf 87658998----58--5254-74688773011667898--3599997088899
Q gi|254780945|r 558 VDASIIII----EN--AEHF-GLAQLHQLRGRVGRGEE--ISSCILLYHPPLS 601 (700)
Q Consensus 558 pna~~mvI----~~--aerf-GLsqLHQLRGRVGRg~~--~s~c~l~~~~~~~ 601 (700)
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred CCCCEEEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 40013546557754885356581577775444301556546549995578878