HHsearch alignment for GI: 254780945 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=98.54 E-value=2.2e-05 Score=61.83 Aligned_cols=352 Identities=22% Similarity=0.360 Sum_probs=196.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCC-
Q ss_conf 0246798899999999984100134307886214422369999997334443054588612799999999862110145-
Q gi|254780945|r 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQN- 347 (700)
Q Consensus 269 LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~- 347 (700)
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RG-kLIM-AcGTGKTfTsLkisEala~--~~iL~LvPSIsLLsQ---Tlrew~~~~ 230 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRG-KLIM-ACGTGKTFTSLKISEALAA--ARILFLVPSISLLSQ---TLREWTAQK 230 (1518)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCC-CEEE-ECCCCCCCHHHHHHHHHHH--HHEEEECCHHHHHHH---HHHHHHHCC
T ss_conf 87899836789999998625516677-5898-3378862137889999864--023654351899999---999885346
Q ss_pred -CCCEEEEEECCCCHHH-----------------HHHHHHHH----CCCCCEEEEEC-HHHCC----CCCCCCCCCEEEE
Q ss_conf -7865899624642256-----------------67687762----13475486411-12013----3455444417885
Q gi|254780945|r 348 -TQIIVEIITGNMPQAH-----------------RRKALERI----AHGQAHIIIGT-HALFQ----DSIQYYKLILVIV 400 (700)
Q Consensus 348 -~~i~v~lLtg~~~~~e-----------------r~~i~~~i----~~G~~~iiIGT-HAL~q----~~v~F~~LgLvVi 400 (700)
T Consensus 231 ~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 231 ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 65512578863652344412321204788875749999999987533378389997021148789999749997537974
Q ss_pred CCCCCC-CHHHHHHHHHCCC-------------CCCCEEECHHHHHHHHHHH---HHHCCCHHHHC-CCCCCC-------
Q ss_conf 210133-5688998740256-------------7761010101322789999---75201011110-235576-------
Q gi|254780945|r 401 DEQHRF-GVQQRLKLTQKAT-------------APHVLLMTATPIPRTLVLT---SLGDIDISKIT-EKPAGR------- 455 (700)
Q Consensus 401 DEQHRF-GV~QR~~L~~Kg~-------------~ph~L~MtATPIPRTLal~---~ygdldvS~i~-e~P~gR------- 455 (700)
T Consensus 311 DEAHRTtGa----~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~F 386 (1518)
T COG4889 311 DEAHRTTGA----TLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGF 386 (1518)
T ss_pred CCHHCCCCC----EECCCCCCCCEEECCCCCHHHHHHHHCCCCCHHHCHHHHHHHHHCCCEEECCCHHHHHCHHHHCCCH
T ss_conf 400014462----3225772010453376415888766600686021225453032114301125526554546621226
Q ss_pred -----CCC----EEEEEECCC--H-----------------H------HHHHHHHHHHC-----CC--------CEEEEE
Q ss_conf -----662----079997020--0-----------------2------68999976310-----38--------738999
Q gi|254780945|r 456 -----KPI----KTVIIPINR--I-----------------D------EVIERLKVVLS-----EG--------KKAYWI 488 (700)
Q Consensus 456 -----~~I----~T~~~~~~~--~-----------------~------~~~~~i~~~l~-----~g--------~q~y~V 488 (700)
T Consensus 387 geAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF 466 (1518)
T COG4889 387 GEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAF 466 (1518)
T ss_pred HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77876401005258999831766524565630686434243445677777665665325536543676775078899999
Q ss_pred ECCCCCCCCC--CCCHHHHHHH-HHHHHCCC-CEE--CCCCCCCHHHHHHHHH---HHHCCCEEEEEECHHHHCCCCCCC
Q ss_conf 7120122111--2101466666-66866371-031--2014699899999999---975598699998003410468887
Q gi|254780945|r 489 CPQIEEKKES--NFRSVVERFN-SLHEHFTS-SIA--IIHGRMSDIDKESVMD---SFKNGTCKLLIATTVIEVGIDVVD 559 (700)
Q Consensus 489 cPlIeese~~--~~~~~~~~~~-~l~~~~~~-~v~--~lHGkm~~~ek~~~m~---~F~~g~~~iLvaTtviEVGvdvpn 559 (700)
T Consensus 467 ~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPa 546 (1518)
T COG4889 467 AKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPA 546 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHEEECCCHHHHCCCCCCC
T ss_conf 87667788788888999999999997326683688751467300888877886158899421011013315423788534
Q ss_pred CCEEEEECHHHCCHHHHHHHHHCCCC---CCCCEEEEEEECCCCC-------------HHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 65899858525474688773011667---8983599997088899-------------8799999999841425899999
Q gi|254780945|r 560 ASIIIIENAEHFGLAQLHQLRGRVGR---GEEISSCILLYHPPLS-------------KNSYTRLSVLKNTEDGFLIAEE 623 (700)
Q Consensus 560 a~~mvI~~aerfGLsqLHQLRGRVGR---g~~~s~c~l~~~~~~~-------------~~~~~Rl~~l~~~~dGf~iAe~ 623 (700)
T Consensus 547 LDsViFf~p-r~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~----amv 621 (1518)
T COG4889 547 LDSVIFFDP-RSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDE----AMV 621 (1518)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCH----HHH
T ss_conf 123798668-512889999999998727687665699873158777846777347318999999998873377----764
Q ss_pred HH--HHCCCCCCCCC
Q ss_conf 98--52063000260
Q gi|254780945|r 624 DL--KQRKEGEILGI 636 (700)
Q Consensus 624 Dl--~lRG~G~~~G~ 636 (700)
T Consensus 622 ~~k~k~Ki~g~d~a~ 636 (1518)
T COG4889 622 DFKEKIKIFGSDDAS 636 (1518)
T ss_pred HHHHHHHCCCCCCCC
T ss_conf 149875023667788