HHsearch alignment for GI: 254780945 and conserved domain: KOG1000

>KOG1000 consensus.
Probab=95.86  E-value=0.054  Score=35.22  Aligned_cols=326  Identities=20%  Similarity=0.295  Sum_probs=174.1

Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf             63024679889999999998410013430788621442236999999733444305458861279999999986211014
Q gi|254780945|r  267 RNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ  346 (700)
Q Consensus       267 ~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~  346 (700)
T Consensus       198 ~LlPFQre--------Gv~faL~RgGR~--llADeMGLGKTiQAl-aIA~yyraEwplliVcPAsv-rftWa~al~r~lp  265 (689)
T KOG1000         198 RLLPFQRE--------GVIFALERGGRI--LLADEMGLGKTIQAL-AIARYYRAEWPLLIVCPASV-RFTWAKALNRFLP  265 (689)
T ss_pred             HHCCHHHH--------HHHHHHHCCCEE--EEECCCCCCHHHHHH-HHHHHHHHCCCEEEEECHHH-HHHHHHHHHHHCC
T ss_conf             61703565--------478898538739--984124541688999-99999860486799922788-6899999998531


Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHH-CCCCCEEEEECH-HHCCCCCCCCCCCEEEECCCCCCCHHHHHH------HHHCC
Q ss_conf             5786589962464225667687762-134754864111-201334554444178852101335688998------74025
Q gi|254780945|r  347 NTQIIVEIITGNMPQAHRRKALERI-AHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQRLK------LTQKA  418 (700)
Q Consensus       347 ~~~i~v~lLtg~~~~~er~~i~~~i-~~G~~~iiIGTH-AL~q~~v~F~~LgLvViDEQHRFGV~QR~~------L~~Kg  418 (700)
T Consensus       266 s~~-pi~vv~~~~D------~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk--  336 (689)
T KOG1000         266 SIH-PIFVVDKSSD------PLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLK--  336 (689)
T ss_pred             CCC-CEEEEECCCC------CCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCHHHHHHHHHHHH--
T ss_conf             026-0478852667------7654566772789878999999998736541189971256541011223666656998--


Q ss_pred             CCCCCEEECHHHH-HHHHHH---------HHHHC-----------------------------------------CCHHH
Q ss_conf             6776101010132-278999---------97520-----------------------------------------10111
Q gi|254780945|r  419 TAPHVLLMTATPI-PRTLVL---------TSLGD-----------------------------------------IDISK  447 (700)
Q Consensus       419 ~~ph~L~MtATPI-PRTLal---------~~ygd-----------------------------------------ldvS~  447 (700)
T Consensus       337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv  416 (689)
T KOG1000         337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV  416 (689)
T ss_pred             HHHHEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76444772388556781442135554121004228998777537641102450377877899999999999999999988


Q ss_pred             HCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEE----------------------EEEECCCCC--------CCC
Q ss_conf             10235576662079997020026899997631038738----------------------999712012--------211
Q gi|254780945|r  448 ITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKA----------------------YWICPQIEE--------KKE  497 (700)
Q Consensus       448 i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l~~g~q~----------------------y~VcPlIee--------se~  497 (700)
T Consensus       417 L~qLPpKrr~V-v~~~~gr~da~~~~lv~~a~-~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~K  494 (689)
T KOG1000         417 LKQLPPKRREV-VYVSGGRIDARMDDLVKAAA-DYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRK  494 (689)
T ss_pred             HHHCCCCCEEE-EEECCCCCCHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE
T ss_conf             75388010489-99747862267899998753-20012366665677887898751102088999997474445688735


Q ss_pred             CC-CCHHHHHHHHHHHHCCC-CEEC--CCCCCCHHHHHHHHHHHHCCC-EE-EEEECHHHHCCCCCCCCCEEEEECHHH-
Q ss_conf             12-10146666666866371-0312--014699899999999975598-69-999800341046888765899858525-
Q gi|254780945|r  498 SN-FRSVVERFNSLHEHFTS-SIAI--IHGRMSDIDKESVMDSFKNGT-CK-LLIATTVIEVGIDVVDASIIIIENAEH-  570 (700)
Q Consensus       498 ~~-~~~~~~~~~~l~~~~~~-~v~~--lHGkm~~~ek~~~m~~F~~g~-~~-iLvaTtviEVGvdvpna~~mvI~~aer-  570 (700)
T Consensus       495 flVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF--aEL~  572 (689)
T KOG1000         495 FLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF--AELH  572 (689)
T ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCEEEE--EEEC
T ss_conf             99994148799999999987479758856989843478999873146314799999863144414651325899--9823


Q ss_pred             CCHHHHHHHHHCCCCCCCCEE---EEEEECCCCCH----HHHHHHHHHHHHCHH
Q ss_conf             474688773011667898359---99970888998----799999999841425
Q gi|254780945|r  571 FGLAQLHQLRGRVGRGEEISS---CILLYHPPLSK----NSYTRLSVLKNTEDG  617 (700)
Q Consensus       571 fGLsqLHQLRGRVGRg~~~s~---c~l~~~~~~~~----~~~~Rl~~l~~~~dG  617 (700)
T Consensus       573 wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~  626 (689)
T KOG1000         573 WNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLS  626 (689)
T ss_pred             CCCCEEEECHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             787547751465664056651138999954845777789999998788662567