HHsearch alignment for GI: 254780945 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=99.93 E-value=6e-23 Score=199.54 Aligned_cols=322 Identities=21% Similarity=0.315 Sum_probs=231.2
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH-HHHHHCCEEEEEHHHHHHHHH
Q ss_conf 789999863024-679889999999998410013430788621442236999999733-444305458861279999999
Q gi|254780945|r 260 KIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAA-AVEAGGQAVIMAPIGILAQQH 337 (700)
Q Consensus 260 ~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~-~~~~G~Q~alMaPTEILA~QH 337 (700)
T Consensus 10 ~~~~~~~~~~gI~~l~p~Q~e~l~~---g~~~g~--NllvsaPT~sGKTlvAElail~~~l~~~~k~iyi~P~kALa~EK 84 (717)
T PRK00254 10 ERIKEILKERGIEELYPPQAEALTS---GVLEGK--NLLIAIPTASGKTLIAEIAMVNKLLREGGKAVYLVPLKALAEEK 84 (717)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH---HHCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf 8999999976987268999999874---233698--18998998874899999999999985299299992679999999
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC----HHHCCCCC-CCCCCCEEEECCCCCCCHHHHH
Q ss_conf 986211014578658996246422566768776213475486411----12013345-5444417885210133568899
Q gi|254780945|r 338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDSI-QYYKLILVIVDEQHRFGVQQRL 412 (700)
Q Consensus 338 ~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT----HAL~q~~v-~F~~LgLvViDEQHRFGV~QR~ 412 (700)
T Consensus 85 ~~~f~~-~~~~g~~V~~~tGd~~~~~~-------~l~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH~igD~~RG 156 (717)
T PRK00254 85 FREFKD-WEVLGLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIHLIGSRDRG 156 (717)
T ss_pred HHHHHH-HHHCCCEEEEEECCCCCCCC-------CCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEEECCCCCCH
T ss_conf 999987-77449889897489888701-------0468999998889999999716256532698999760788898740
Q ss_pred HHHH----C-CCCCCCEEECHH-HHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEC----------CCHHHHHHHHH
Q ss_conf 8740----2-567761010101-322789999752010111102355766620799970----------20026899997
Q gi|254780945|r 413 KLTQ----K-ATAPHVLLMTAT-PIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI----------NRIDEVIERLK 476 (700)
Q Consensus 413 ~L~~----K-g~~ph~L~MtAT-PIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~----------~~~~~~~~~i~ 476 (700)
T Consensus 157 ~~lE~~l~~l~~~~qiIgLSATi~N~~~la~WL~a~~--~~~~~RP---VpL~~~v~~~~~~~~~~~~~~~~~~~~~l~~ 231 (717)
T PRK00254 157 ATLEFILTHMLGRAQIIGLSATIGNPEELAEWLNAEL--IVSDWRP---VKLRKGVFYQGFVFWEDGKIDRYNSWEELVY 231 (717)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCC--CCCCCCC---CCEEEEEEECCEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999951003669999633499899999828852--1568857---7527644206601104562054430789999
Q ss_pred HHHCCCCEEEEEECCCCCCCCC--CCC-------------HHHHH---------HHHHHHHCCCCEECCCCCCCHHHHHH
Q ss_conf 6310387389997120122111--210-------------14666---------66668663710312014699899999
Q gi|254780945|r 477 VVLSEGKKAYWICPQIEEKKES--NFR-------------SVVER---------FNSLHEHFTSSIAIIHGRMSDIDKES 532 (700)
Q Consensus 477 ~~l~~g~q~y~VcPlIeese~~--~~~-------------~~~~~---------~~~l~~~~~~~v~~lHGkm~~~ek~~ 532 (700)
T Consensus 232 ~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAGL~~~~R~l 311 (717)
T PRK00254 232 DAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAGLGRDERVL 311 (717)
T ss_pred HHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCCCCHHHHHH
T ss_conf 99974998189995579999999999998876307688999999999987376518999999708312158999889999
Q ss_pred HHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE-------CHHHCCHHHHHHHHHCCCCC--CCCEEEEEEECCC
Q ss_conf 9999755986999980034104688876589985-------85254746887730116678--9835999970888
Q gi|254780945|r 533 VMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE-------NAEHFGLAQLHQLRGRVGRG--EEISSCILLYHPP 599 (700)
Q Consensus 533 ~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~-------~aerfGLsqLHQLRGRVGRg--~~~s~c~l~~~~~ 599 (700)
T Consensus 312 VE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~iii~~~~ 387 (717)
T PRK00254 312 VEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAIIVSTTE 387 (717)
T ss_pred HHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 9999987995899816446504577605999926567079972378753688862506999878885089995485