HHsearch alignment for GI: 254780945 and conserved domain: PRK00484
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=93.30 E-value=0.77 Score=26.18 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=60.1
Q ss_pred HHCCCCCCCCCCCCCHH---------HCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCC-----HH
Q ss_conf 70897401344446478---------88998789999999897542158983389999818936999995188-----78
Q gi|254780945|r 46 FYHPSSFIDRHYRPKIS---------EISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRK-----TE 111 (700)
Q Consensus 46 ~~~PrrYeDr~~~~~I~---------~l~~g~~vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~-----~~ 111 (700)
T Consensus 23 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~---~G-k~~F~~lrD~~g~iQ~~~~~~~~~~~~~~ 98 (491)
T PRK00484 23 NPYPNDFERTHTSAELQAKYADLEKEELEALIEVSVAGRVMLKRV---MG-KASFATIQDGSGRIQLYVSKDDVGEEAYE 98 (491)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEC---CC-CEEEEEEEECCCCEEEEEECCCCCHHHHH
T ss_conf 999997858666999999875138533467988999987840505---69-81999999699458999966758999999
Q ss_pred HHHHHCCCCCEEEEEEEEEEC-CCEEEEECCEEEECC
Q ss_conf 998732898889999899731-877999778689626
Q gi|254780945|r 112 MLKNVFFEGRKITVTGKIKKL-KNRIIMVHPHYIFHN 147 (700)
Q Consensus 112 yl~k~lk~G~~v~vsGKv~~~-~~~~qi~hPe~~~~~ 147 (700)
T Consensus 99 ~~-~~l~~gd~i~v~G~v~~t~~Gel~v~~~~~~iLs 134 (491)
T PRK00484 99 AF-KKLDLGDIIGVEGTLFKTKTGELSVKVTELTLLT 134 (491)
T ss_pred HH-HCCCCCCEEEEEEEEEECCCCEEEEECCEEEEEC
T ss_conf 99-6068666898787998658851664033179931