HHsearch alignment for GI: 254780945 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.93 E-value=4e-22 Score=193.12 Aligned_cols=318 Identities=19% Similarity=0.207 Sum_probs=224.0
Q ss_pred CCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----------HCCEEE
Q ss_conf 75789999863024-6798899999999984100134307886214422369999997334443----------054588
Q gi|254780945|r 258 EGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------GGQAVI 326 (700)
Q Consensus 258 ~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~----------G~Q~al 326 (700)
T Consensus 92 ~~~ll~-aL~~~Gf~~PTpIQ~~aIP~iL~G----k--Dvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLI 164 (472)
T PRK01297 92 APELMH-AIHDLGFPYCTPIQAQVLGYTLAG----H--DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 164 (472)
T ss_pred CHHHHH-HHHHCCCCCCCHHHHHHHHHHHCC----C--CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEE
T ss_conf 999999-999779999999999999999769----9--889989998679999999999999717751011368952999
Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEEC
Q ss_conf 6127999999998621101457865899624642256676877621347548641112-----01334554444178852
Q gi|254780945|r 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVD 401 (700)
Q Consensus 327 MaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViD 401 (700)
T Consensus 165 L~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~---~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlD 241 (472)
T PRK01297 165 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFD---KQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 241 (472)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH---HHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEE
T ss_conf 879999999999999997462797699997898879---99999855899889979799998743482542552299998
Q ss_pred CCCCC-----CHHHHHHHHH--CCCCCCCEEECHHHHHHHHHHH--HHHCCCHHHHCCCCCCC--CCCEEEEEECCC---
Q ss_conf 10133-----5688998740--2567761010101322789999--75201011110235576--662079997020---
Q gi|254780945|r 402 EQHRF-----GVQQRLKLTQ--KATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGR--KPIKTVIIPINR--- 467 (700)
Q Consensus 402 EQHRF-----GV~QR~~L~~--Kg~~ph~L~MtATPIPRTLal~--~ygdldvS~i~e~P~gR--~~I~T~~~~~~~--- 467 (700)
T Consensus 242 EAD~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~--p~~v~i~~~~~~~~~v~q~~~~~~~~dk 319 (472)
T PRK01297 242 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTD--PAIVEIEPENVASDTVEQHVYAVAGSDK 319 (472)
T ss_pred CHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCC--CEEEEECCCCCCCCCEEEEEEECCHHHH
T ss_conf 73121025759999999996898557169998525778999999997799--8899965776677760289998188899
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 02689999763103873899971201221112101466666668663710312014699899999999975598699998
Q gi|254780945|r 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 (700)
Q Consensus 468 ~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLva 547 (700)
T Consensus 320 ~~~L~~ll~~~--~~~k~IIF~nt~~--------~~~~l~~~L~~-~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVa 388 (472)
T PRK01297 320 YKLLYNLVTQN--PWERVMVFANRKD--------EVRRIEERLVK-DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVA 388 (472)
T ss_pred HHHHHHHHHHC--CCCCEEEECCCHH--------HHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999847--9873689617499--------99999987654-4961686437789999999999997699969988
Q ss_pred CHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 0034104688876589985852547468877301166789835999970888
Q gi|254780945|r 548 TTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 (700)
Q Consensus 548 TtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~ 599 (700)
T Consensus 389 TDvaaRGLDi~~V~~VInyD~P~~~~~YIHR-iGRTGRaG~~G~aisfv~~~ 439 (472)
T PRK01297 389 TDVAGRGIHIDGISHVINFTLPEDPDDYVHR-IGRTGRAGASGVSISFAGED 439 (472)
T ss_pred CCHHHCCCCCCCCCEEEEECCCCCHHHHHHC-CCHHHCCCCCEEEEEEECHH
T ss_conf 6613366775788889996898976760102-65312689963799986388