HHsearch alignment for GI: 254780945 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.90 E-value=0.025 Score=37.88 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=61.6
Q ss_pred HCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEE
Q ss_conf 05458861279999999986211014578658996246422566768776213475486411120133455444417885
Q gi|254780945|r 321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV 400 (700)
Q Consensus 321 G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvVi 400 (700)
T Consensus 332 ~~k~IIF~nt~~~~~~----l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTD-vaaRGLDi~~V~~VIn 406 (472)
T PRK01297 332 WERVMVFANRKDEVRR----IEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-VAGRGIHIDGISHVIN 406 (472)
T ss_pred CCCEEEECCCHHHHHH----HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-HHHCCCCCCCCCEEEE
T ss_conf 8736896174999999----9987654496168643778999999999999769996998866-1336677578888999