HHsearch alignment for GI: 254780945 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.90  E-value=0.025  Score=37.88  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             HCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEE
Q ss_conf             05458861279999999986211014578658996246422566768776213475486411120133455444417885
Q gi|254780945|r  321 GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIV  400 (700)
Q Consensus       321 G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvVi  400 (700)
T Consensus       332 ~~k~IIF~nt~~~~~~----l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTD-vaaRGLDi~~V~~VIn  406 (472)
T PRK01297        332 WERVMVFANRKDEVRR----IEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-VAGRGIHIDGISHVIN  406 (472)
T ss_pred             CCCEEEECCCHHHHHH----HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-HHHCCCCCCCCCEEEE
T ss_conf             8736896174999999----9987654496168643778999999999999769996998866-1336677578888999