HHsearch alignment for GI: 254780945 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=91.48 E-value=1.2 Score=24.54 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 89999988740124688554898787089740134444647888998789999999897542158983389999818936
Q gi|254780945|r 21 KKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEERIVTITGYISQHSSFQLQKRRPYKILLNDGTGE 100 (700)
Q Consensus 21 pk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr~~~~~I~~l~~g~~vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~ 100 (700)
T Consensus 618 eq~rvr~~k~~~l~~~g~-------~pypv~~~RTHT~~e~~~~~~G~~VtvaGwV~r~RD----hGgl~FidLRD~~G~ 686 (1099)
T PRK02983 618 EQVRVRLAKLDALRESGV-------DAYPVGRPPSHTVAQALAAPDGEEVSVSGRVLRIRD----YGGVLFAQLRDWSGE 686 (1099)
T ss_pred HHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEEEEC----CCCEEEEEEEECCCC
T ss_conf 999999999999997599-------999999999741666424799998999987999843----788699997418876
Q ss_pred EEEEEECCC-----HHHHHHHCCCCCEEEEEEEEEE-CCCEEEEECCEEEECCC
Q ss_conf 999995188-----7899873289888999989973-18779997786896264
Q gi|254780945|r 101 ITLLFFYRK-----TEMLKNVFFEGRKITVTGKIKK-LKNRIIMVHPHYIFHNS 148 (700)
Q Consensus 101 i~lvfFn~~-----~~yl~k~lk~G~~v~vsGKv~~-~~~~~qi~hPe~~~~~~ 148 (700)
T Consensus 687 iQvv~~~d~~g~~~~~~~~~~vdlGDvI~V~G~V~~t~tGEisV~a~~~~vlsK 740 (1099)
T PRK02983 687 LQVLLDNSRLGQGRLADFTAAVDLGDLIEATGTMGASRNGTPSLLVTSWRLIGK 740 (1099)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEEC
T ss_conf 799997775676899998762577887999858862789845799748998404