HHsearch alignment for GI: 254780945 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.93  E-value=1e-21  Score=189.96  Aligned_cols=317  Identities=21%  Similarity=0.260  Sum_probs=223.4

Q ss_pred             CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH----------HHCCEE
Q ss_conf             775789999863024-679889999999998410013430788621442236999999733444----------305458
Q gi|254780945|r  257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----------AGGQAV  325 (700)
Q Consensus       257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~----------~G~Q~a  325 (700)
T Consensus        16 L~~~Ll~a-L~~~Gf~~PTpIQ~~aIP~iL~G----k--Dvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aL   88 (574)
T PRK04537         16 LHPALVAG-LESAGFTRCTPIQALTLPVALPG----G--DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL   88 (574)
T ss_pred             CCHHHHHH-HHHCCCCCCCHHHHHHHHHHHCC----C--CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf             89999999-99779998999999999999579----9--88998489888999999999999983744345778996199


Q ss_pred             EEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-HHC----CCC-CCCCCCCEEE
Q ss_conf             8612799999999862110145786589962464225667687762134754864111-201----334-5544441788
Q gi|254780945|r  326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF----QDS-IQYYKLILVI  399 (700)
Q Consensus       326 lMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-AL~----q~~-v~F~~LgLvV  399 (700)
T Consensus        89 ILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~---L~~-g~dIVVaTPGRLld~L~~~~~~~L~~vk~LV  164 (574)
T PRK04537         89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---LQQ-GVDVIIATPGRLIDYVKQHKVVSLHACEICV  164 (574)
T ss_pred             EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HCC-CCCEEEECHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             977989999999999999864589779999799668899998---735-9998998989999999817986533315899


Q ss_pred             ECCCCC-----CCHHHHHHHHHCC--CCCCCEEECHHHHHHHHHHH--HHHCCCHHHHC--CCCCCCCCCEEEEEE--CC
Q ss_conf             521013-----3568899874025--67761010101322789999--75201011110--235576662079997--02
Q gi|254780945|r  400 VDEQHR-----FGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT--SLGDIDISKIT--EKPAGRKPIKTVIIP--IN  466 (700)
Q Consensus       400 iDEQHR-----FGV~QR~~L~~Kg--~~ph~L~MtATPIPRTLal~--~ygdldvS~i~--e~P~gR~~I~T~~~~--~~  466 (700)
T Consensus       165 LDEAD~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~--~~I~Q~~~~~~~~  242 (574)
T PRK04537        165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITA--ARVRQRIYFPSDE  242 (574)
T ss_pred             ECCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCC--CCEEEEEEECCHH
T ss_conf             62732654287799999999966655685589998327779999999977998699965665457--7603899977778


Q ss_pred             -CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             -0026899997631038738999712012211121014666666686637103120146998999999999755986999
Q gi|254780945|r  467 -RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL  545 (700)
Q Consensus       467 -~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iL  545 (700)
T Consensus       243 ~K~~~L~~LL~~--~~~~k~IIF~nT~--------~~ve~l~~~L~~~-g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VL  311 (574)
T PRK04537        243 EKQTLLLGLLSR--SEGARTMVFVNTK--------AFVERVARTLERH-GYRVGVLSGDVPQKKRESLLNRFQKGQLEIL  311 (574)
T ss_pred             HHHHHHHHHHHH--CCCCCCEEECCHH--------HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             999999999972--6776511533418--------9999999999977-9968997099999999999999976999799


Q ss_pred             EECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf             98003410468887658998585254746887730116678983599997088
Q gi|254780945|r  546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP  598 (700)
Q Consensus       546 vaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~  598 (700)
T Consensus       312 VaTDVAARGIDIp~V~~VINYDlP~~~e~YVHR-IGRTGRaGr~G~AITfv~~  363 (574)
T PRK04537        312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHR-IGRTARLGEEGDAISFACE  363 (574)
T ss_pred             EECCCCCCCCCCCCCCEEEEECCCCCHHHHHCC-CCHHHCCCCCEEEEEEECH
T ss_conf             773500233571469979995796982141124-5350378993359998777