HHsearch alignment for GI: 254780945 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.80  E-value=0.011  Score=40.51  Aligned_cols=78  Identities=17%  Similarity=0.327  Sum_probs=67.0

Q ss_pred             HHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCE
Q ss_conf             44305458861279999999986211014578658996246422566768776213475486411120133455444417
Q gi|254780945|r  318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL  397 (700)
Q Consensus       318 ~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgL  397 (700)
T Consensus       254 ~~~~~k~IIF~nT~~~ve~l~~~L~----~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTD-VAARGIDIp~V~~  328 (574)
T PRK04537        254 RSEGARTMVFVNTKAFVERVARTLE----RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-VAARGLHIDGVKY  328 (574)
T ss_pred             HCCCCCCEEECCHHHHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCCCCCE
T ss_conf             2677651153341899999999999----7799689970999999999999999769997997735-0023357146997


Q ss_pred             EEE
Q ss_conf             885
Q gi|254780945|r  398 VIV  400 (700)
Q Consensus       398 vVi  400 (700)
T Consensus       329 VIN  331 (574)
T PRK04537        329 VYN  331 (574)
T ss_pred             EEE
T ss_conf             999