HHsearch alignment for GI: 254780945 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.80 E-value=0.011 Score=40.51 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=67.0
Q ss_pred HHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCE
Q ss_conf 44305458861279999999986211014578658996246422566768776213475486411120133455444417
Q gi|254780945|r 318 VEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL 397 (700)
Q Consensus 318 ~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgL 397 (700)
T Consensus 254 ~~~~~k~IIF~nT~~~ve~l~~~L~----~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTD-VAARGIDIp~V~~ 328 (574)
T PRK04537 254 RSEGARTMVFVNTKAFVERVARTLE----RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-VAARGLHIDGVKY 328 (574)
T ss_pred HCCCCCCEEECCHHHHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCCCCCE
T ss_conf 2677651153341899999999999----7799689970999999999999999769997997735-0023357146997
Q ss_pred EEE
Q ss_conf 885
Q gi|254780945|r 398 VIV 400 (700)
Q Consensus 398 vVi 400 (700)
T Consensus 329 VIN 331 (574)
T PRK04537 329 VYN 331 (574)
T ss_pred EEE
T ss_conf 999