HHsearch alignment for GI: 254780945 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.78 E-value=0.0089 Score=41.36 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=64.1
Q ss_pred HHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEE
Q ss_conf 43054588612799999999862110145786589962464225667687762134754864111201334554444178
Q gi|254780945|r 319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV 398 (700)
Q Consensus 319 ~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLv 398 (700)
T Consensus 254 ~~~~k~iIF~nt~~~~~----~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTD-vaaRGLDi~~V~~V 328 (423)
T PRK04837 254 EWPDRAIIFANTKHRCE----EIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATD-VAARGLHIPDVTHV 328 (423)
T ss_pred HCCCCEEEECCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCCCCCCEE
T ss_conf 08874688616288899----99999976598178722545799999999999769998998700-43277772679889
Q ss_pred EE
Q ss_conf 85
Q gi|254780945|r 399 IV 400 (700)
Q Consensus 399 Vi 400 (700)
T Consensus 329 In 330 (423)
T PRK04837 329 FN 330 (423)
T ss_pred EE
T ss_conf 99