HHsearch alignment for GI: 254780945 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.78  E-value=0.0089  Score=41.36  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             HHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEE
Q ss_conf             43054588612799999999862110145786589962464225667687762134754864111201334554444178
Q gi|254780945|r  319 EAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILV  398 (700)
Q Consensus       319 ~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLv  398 (700)
T Consensus       254 ~~~~k~iIF~nt~~~~~----~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTD-vaaRGLDi~~V~~V  328 (423)
T PRK04837        254 EWPDRAIIFANTKHRCE----EIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATD-VAARGLHIPDVTHV  328 (423)
T ss_pred             HCCCCEEEECCHHHHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCCCCCCEE
T ss_conf             08874688616288899----99999976598178722545799999999999769998998700-43277772679889


Q ss_pred             EE
Q ss_conf             85
Q gi|254780945|r  399 IV  400 (700)
Q Consensus       399 Vi  400 (700)
T Consensus       329 In  330 (423)
T PRK04837        329 FN  330 (423)
T ss_pred             EE
T ss_conf             99