HHsearch alignment for GI: 254780945 and conserved domain: PRK05898
>PRK05898 dnaE DNA polymerase III DnaE; Validated.
Probab=92.09 E-value=1.1 Score=25.02 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHCCCC--EECCCCCCCHHHH-HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE--CHHHCCHHHHHHHH--
Q ss_conf 6668663710--3120146998999-999999755986999980034104688876589985--85254746887730--
Q gi|254780945|r 508 NSLHEHFTSS--IAIIHGRMSDIDK-ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE--NAEHFGLAQLHQLR-- 580 (700)
Q Consensus 508 ~~l~~~~~~~--v~~lHGkm~~~ek-~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~--~aerfGLsqLHQLR-- 580 (700)
T Consensus 690 AyLKahyP~eF~aalL~~~~~~~~k~~~~i~ea~~~gi~vl------pPdIN~S~~~f~~~~~~~~Ir~GL~aIKgvG~~ 763 (971)
T PRK05898 690 AYLKHYYPLEFLSILLSHTSASKDKLLSYLNEAKEFNISIK------KPDINYSSNSFVLDTQKQIIRFGFNTIKGFGDE 763 (971)
T ss_pred HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEC------CCCCCCCCCCEEEECCCCEEEEEHHHHCCCCHH
T ss_conf 99985478999999846899997579999999998699273------882257778527857998699764760785599
Q ss_pred -------HCCCCCCCCEEEEEEE
Q ss_conf -------1166789835999970
Q gi|254780945|r 581 -------GRVGRGEEISSCILLY 596 (700)
Q Consensus 581 -------GRVGRg~~~s~c~l~~ 596 (700)
T Consensus 764 ~~~~Iv~~R-~~g~f~~~~df~~ 785 (971)
T PRK05898 764 LLKKIKSAL-QNKTFSDFISYID 785 (971)
T ss_pred HHHHHHHHH-CCCCCCCHHHHHH
T ss_conf 999999986-6899999999998