HHsearch alignment for GI: 254780945 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.97  E-value=4.6e-06  Score=67.16  Aligned_cols=134  Identities=23%  Similarity=0.324  Sum_probs=101.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH-HHHHHHCCEEEEEHHHHHHHHHHHH----HHHH
Q ss_conf             2467988999999999841001343078862144223699999973-3444305458861279999999986----2110
Q gi|254780945|r  270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQAVIMAPIGILAQQHYEF----IKKY  344 (700)
Q Consensus       270 PF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l-~~~~~G~Q~alMaPTEILA~QH~~~----~~~~  344 (700)
T Consensus       256 ~ye~R~~Q~~ma~~V~~al~~~~~l--~iEApTGtGKTlaYLlPai~~A~~~~~~vvIST~T~~LQ~QL~~kdlp~L~~~  333 (932)
T PRK08074        256 GYEKREGQQEMMKEVYTALRDSRHA--LIEAGTGTGKTLAYLLPAAYFAKKKEEPVIISTYTVQLQQQLLEKDIPLLQKI  333 (932)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCE--EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             8875878999999999998538847--99868888713687999999999759909999162889999998689999997


Q ss_pred             CCCCCCEEEEEECCCC-----------------------------------HHHH---------HHHHHHHCC-------
Q ss_conf             1457865899624642-----------------------------------2566---------768776213-------
Q gi|254780945|r  345 TQNTQIIVEIITGNMP-----------------------------------QAHR---------RKALERIAH-------  373 (700)
Q Consensus       345 ~~~~~i~v~lLtg~~~-----------------------------------~~er---------~~i~~~i~~-------  373 (700)
T Consensus       334 l-~~~~~~~llKGr~nYlCl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~del~~~~~~~~~w~~i~~~~~~~~~  412 (932)
T PRK08074        334 F-PFPVKAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGHSPGG  412 (932)
T ss_pred             H-CCCCCEEEEECCHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             1-998608999661412776889998535454155788899999987268886887636996348899884557532023


Q ss_pred             ------------------CCCEEEEECHHHCCCC-----CCCCCCCEEEECCCCCC
Q ss_conf             ------------------4754864111201334-----55444417885210133
Q gi|254780945|r  374 ------------------GQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRF  406 (700)
Q Consensus       374 ------------------G~~~iiIGTHAL~q~~-----v~F~~LgLvViDEQHRF  406 (700)
T Consensus       413 ~~c~~~~~Cf~~~ar~~a~~AdvvI~NHalL~~d~~~~~~ilp~~~~lViDEAH~L  468 (932)
T PRK08074        413 KQSPWFSRCFYQRAKNKAKFADIVITNHALLLTDFTSEEPLLPSYEHIIIDEAHHF  468 (932)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHH
T ss_conf             55887577989999997642999998889985656414776887676997313231