HHsearch alignment for GI: 254780945 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.97 E-value=4.6e-06 Score=67.16 Aligned_cols=134 Identities=23% Similarity=0.324 Sum_probs=101.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH-HHHHHHCCEEEEEHHHHHHHHHHHH----HHHH
Q ss_conf 2467988999999999841001343078862144223699999973-3444305458861279999999986----2110
Q gi|254780945|r 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMA-AAVEAGGQAVIMAPIGILAQQHYEF----IKKY 344 (700)
Q Consensus 270 PF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l-~~~~~G~Q~alMaPTEILA~QH~~~----~~~~ 344 (700)
T Consensus 256 ~ye~R~~Q~~ma~~V~~al~~~~~l--~iEApTGtGKTlaYLlPai~~A~~~~~~vvIST~T~~LQ~QL~~kdlp~L~~~ 333 (932)
T PRK08074 256 GYEKREGQQEMMKEVYTALRDSRHA--LIEAGTGTGKTLAYLLPAAYFAKKKEEPVIISTYTVQLQQQLLEKDIPLLQKI 333 (932)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCE--EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 8875878999999999998538847--99868888713687999999999759909999162889999998689999997
Q ss_pred CCCCCCEEEEEECCCC-----------------------------------HHHH---------HHHHHHHCC-------
Q ss_conf 1457865899624642-----------------------------------2566---------768776213-------
Q gi|254780945|r 345 TQNTQIIVEIITGNMP-----------------------------------QAHR---------RKALERIAH------- 373 (700)
Q Consensus 345 ~~~~~i~v~lLtg~~~-----------------------------------~~er---------~~i~~~i~~------- 373 (700)
T Consensus 334 l-~~~~~~~llKGr~nYlCl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~del~~~~~~~~~w~~i~~~~~~~~~ 412 (932)
T PRK08074 334 F-PFPVKAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGHSPGG 412 (932)
T ss_pred H-CCCCCEEEEECCHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 1-998608999661412776889998535454155788899999987268886887636996348899884557532023
Q ss_pred ------------------CCCEEEEECHHHCCCC-----CCCCCCCEEEECCCCCC
Q ss_conf ------------------4754864111201334-----55444417885210133
Q gi|254780945|r 374 ------------------GQAHIIIGTHALFQDS-----IQYYKLILVIVDEQHRF 406 (700)
Q Consensus 374 ------------------G~~~iiIGTHAL~q~~-----v~F~~LgLvViDEQHRF 406 (700)
T Consensus 413 ~~c~~~~~Cf~~~ar~~a~~AdvvI~NHalL~~d~~~~~~ilp~~~~lViDEAH~L 468 (932)
T PRK08074 413 KQSPWFSRCFYQRAKNKAKFADIVITNHALLLTDFTSEEPLLPSYEHIIIDEAHHF 468 (932)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHH
T ss_conf 55887577989999997642999998889985656414776887676997313231