HHsearch alignment for GI: 254780945 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=92.42 E-value=0.99 Score=25.31 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEC-CCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 268999976310-387389997120122111210146666666866371-0312-0146998999999999755986999
Q gi|254780945|r 469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI-IHGRMSDIDKESVMDSFKNGTCKLL 545 (700)
Q Consensus 469 ~~~~~~i~~~l~-~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~-~v~~-lHGkm~~~ek~~~m~~F~~g~~~iL 545 (700)
T Consensus 742 ~~la~~i~~l~~~~~G~~LVLFtS~--------~~L~~v~~~l~~~~~~~~~~ll~Qg-~~~~sr~~ll~~F~~~~~svL 812 (932)
T PRK08074 742 EEVAAYIAKIAKATKGRMLVLFTSY--------EMLKKTYYNLKNEEELEGYVLLAQG-VTGGSRARLMKKFQQFDKAIL 812 (932)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCH--------HHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEE
T ss_conf 9999999999987299999992659--------9999999998643335795599878-987509999999984798499
Q ss_pred EECHHHHCCCCCCCCCE
Q ss_conf 98003410468887658
Q gi|254780945|r 546 IATTVIEVGIDVVDASI 562 (700)
Q Consensus 546 vaTtviEVGvdvpna~~ 562 (700)
T Consensus 813 lGt~SFwEGVDlpGd~L 829 (932)
T PRK08074 813 LGTSSFWEGIDIPGDEL 829 (932)
T ss_pred EECCCCCCCCCCCCCCE
T ss_conf 96566435622799886