HHsearch alignment for GI: 254780945 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=92.42  E-value=0.99  Score=25.31  Aligned_cols=85  Identities=13%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC-CEEC-CCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             268999976310-387389997120122111210146666666866371-0312-0146998999999999755986999
Q gi|254780945|r  469 DEVIERLKVVLS-EGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAI-IHGRMSDIDKESVMDSFKNGTCKLL  545 (700)
Q Consensus       469 ~~~~~~i~~~l~-~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~-~v~~-lHGkm~~~ek~~~m~~F~~g~~~iL  545 (700)
T Consensus       742 ~~la~~i~~l~~~~~G~~LVLFtS~--------~~L~~v~~~l~~~~~~~~~~ll~Qg-~~~~sr~~ll~~F~~~~~svL  812 (932)
T PRK08074        742 EEVAAYIAKIAKATKGRMLVLFTSY--------EMLKKTYYNLKNEEELEGYVLLAQG-VTGGSRARLMKKFQQFDKAIL  812 (932)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCH--------HHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEE
T ss_conf             9999999999987299999992659--------9999999998643335795599878-987509999999984798499


Q ss_pred             EECHHHHCCCCCCCCCE
Q ss_conf             98003410468887658
Q gi|254780945|r  546 IATTVIEVGIDVVDASI  562 (700)
Q Consensus       546 vaTtviEVGvdvpna~~  562 (700)
T Consensus       813 lGt~SFwEGVDlpGd~L  829 (932)
T PRK08074        813 LGTSSFWEGIDIPGDEL  829 (932)
T ss_pred             EECCCCCCCCCCCCCCE
T ss_conf             96566435622799886