HHsearch alignment for GI: 254780945 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=96.87  E-value=0.0041  Score=44.02  Aligned_cols=129  Identities=16%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             86205699988999862045896565667999999987666666677776--55--554320357678775789999863
Q gi|254780945|r  193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL--MR--KQFKKEIGIPINVEGKIAQKILRN  268 (700)
Q Consensus       193 ll~k~~L~s~~eAL~~IH~P~~~~dle~~~~ArkRLafeELl~~QL~l~~--~r--~~~~~~~~~~~~~~~~~~~~f~~~  268 (700)
T Consensus        11 ~l~~LkL~~m~~~~~~~--------~--~~a~~~~~s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp~~k-tle~fDf~   79 (258)
T PRK09183         11 LCGQLQLESLISAAPAL--------A--QQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVK-TFEEYDFT   79 (258)
T ss_pred             HHHHCCCHHHHHHHHHH--------H--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHCCCC
T ss_conf             99987831899999999--------9--9887639999999999999999999999999999977999987-77555654


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHH
Q ss_conf             0246798899999999984100134307886214422369999997334443054588612799999
Q gi|254780945|r  269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ  335 (700)
Q Consensus       269 LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~  335 (700)
T Consensus        80 ~~~~l~~~~i~~La~~-~f--i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~  143 (258)
T PRK09183         80 FATGAPQKQLQSLRSL-SF--IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ  143 (258)
T ss_pred             CCCCCCHHHHHHHHCC-CH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf             6886238999988258-16--6558867998999986899999999999987993999789999999