HHsearch alignment for GI: 254780945 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=96.87 E-value=0.0041 Score=44.02 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 86205699988999862045896565667999999987666666677776--55--554320357678775789999863
Q gi|254780945|r 193 LLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLL--MR--KQFKKEIGIPINVEGKIAQKILRN 268 (700)
Q Consensus 193 ll~k~~L~s~~eAL~~IH~P~~~~dle~~~~ArkRLafeELl~~QL~l~~--~r--~~~~~~~~~~~~~~~~~~~~f~~~ 268 (700)
T Consensus 11 ~l~~LkL~~m~~~~~~~--------~--~~a~~~~~s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp~~k-tle~fDf~ 79 (258)
T PRK09183 11 LCGQLQLESLISAAPAL--------A--QQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVK-TFEEYDFT 79 (258)
T ss_pred HHHHCCCHHHHHHHHHH--------H--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHCCCC
T ss_conf 99987831899999999--------9--9887639999999999999999999999999999977999987-77555654
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHH
Q ss_conf 0246798899999999984100134307886214422369999997334443054588612799999
Q gi|254780945|r 269 IPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 (700)
Q Consensus 269 LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~ 335 (700)
T Consensus 80 ~~~~l~~~~i~~La~~-~f--i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~ 143 (258)
T PRK09183 80 FATGAPQKQLQSLRSL-SF--IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 143 (258)
T ss_pred CCCCCCHHHHHHHHCC-CH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 6886238999988258-16--6558867998999986899999999999987993999789999999