HHsearch alignment for GI: 254780945 and conserved domain: PRK10689

>PRK10689 transcription-repair coupling factor; Provisional.
Probab=97.95  E-value=0.00012  Score=56.12  Aligned_cols=107  Identities=12%  Similarity=0.342  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC---CCCEECCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             002689999763103873899971201221112101466666668663---71031201469989999999997559869
Q gi|254780945|r  467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCK  543 (700)
Q Consensus       467 ~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~---~~~v~~lHGkm~~~ek~~~m~~F~~g~~~  543 (700)
T Consensus       634 KTEVA~RAAFkav~~gkQVavlvPTT--------iLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~~~l~~G~id  705 (1148)
T PRK10689        634 KTEVAMRAAFLAVENHKQVAVLVPTT--------LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID  705 (1148)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCC--------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf             79999999999996398089983662--------2379999999987641573377503888899999999998669987


Q ss_pred             EEEECH-HHHCCCCCCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf             999800-34104688876589985852547468877301
Q gi|254780945|r  544 LLIATT-VIEVGIDVVDASIIIIENAEHFGLAQLHQLRG  581 (700)
Q Consensus       544 iLvaTt-viEVGvdvpna~~mvI~~aerfGLsqLHQLRG  581 (700)
T Consensus       706 IvIGTH~ll~~dv~f~~LGLlIiDEEqrFGV~~KE~lk~  744 (1148)
T PRK10689        706 ILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKA  744 (1148)
T ss_pred             EEEHHHHHHCCCCCCCCCCEEEECCCHHCCHHHHHHHHH
T ss_conf             762048886698654666437860102137999999972