HHsearch alignment for GI: 254780945 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=97.95 E-value=0.00012 Score=56.12 Aligned_cols=107 Identities=12% Similarity=0.342 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC---CCCEECCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 002689999763103873899971201221112101466666668663---71031201469989999999997559869
Q gi|254780945|r 467 RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHF---TSSIAIIHGRMSDIDKESVMDSFKNGTCK 543 (700)
Q Consensus 467 ~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~---~~~v~~lHGkm~~~ek~~~m~~F~~g~~~ 543 (700)
T Consensus 634 KTEVA~RAAFkav~~gkQVavlvPTT--------iLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~~~l~~G~id 705 (1148)
T PRK10689 634 KTEVAMRAAFLAVENHKQVAVLVPTT--------LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID 705 (1148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC--------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 79999999999996398089983662--------2379999999987641573377503888899999999998669987
Q ss_pred EEEECH-HHHCCCCCCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf 999800-34104688876589985852547468877301
Q gi|254780945|r 544 LLIATT-VIEVGIDVVDASIIIIENAEHFGLAQLHQLRG 581 (700)
Q Consensus 544 iLvaTt-viEVGvdvpna~~mvI~~aerfGLsqLHQLRG 581 (700)
T Consensus 706 IvIGTH~ll~~dv~f~~LGLlIiDEEqrFGV~~KE~lk~ 744 (1148)
T PRK10689 706 ILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKA 744 (1148)
T ss_pred EEEHHHHHHCCCCCCCCCCEEEECCCHHCCHHHHHHHHH
T ss_conf 762048886698654666437860102137999999972