HHsearch alignment for GI: 254780945 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=99.30 E-value=5.6e-09 Score=89.98 Aligned_cols=288 Identities=19% Similarity=0.290 Sum_probs=176.3
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEE--EEHHHHHHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 999984100134307886214422369999997334443054588--61279999999986211014-578658996246
Q gi|254780945|r 282 KDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVI--MAPIGILAQQHYEFIKKYTQ-NTQIIVEIITGN 358 (700)
Q Consensus 282 ~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~al--MaPTEILA~QH~~~~~~~~~-~~~i~v~lLtg~ 358 (700)
T Consensus 80 ~~i~~~i~~nqVv--ii~GeTGsGKTTQiPq~~le-~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VR- 155 (1295)
T PRK11131 80 QDILEAIRDHQVV--IVAGETGSGKTTQLPKICLE-LGRGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR- 155 (1295)
T ss_pred HHHHHHHHHCCEE--EEECCCCCCHHHHHHHHHHH-CCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-
T ss_conf 9999999979969--99768999878899999996-2799999899779659999999999999819998998888945-
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECHHH----CCCCCCCCCCCEEEECCCCCCCHHHHH------HHHHCCCCCCCEEECH
Q ss_conf 422566768776213475486411120----133455444417885210133568899------8740256776101010
Q gi|254780945|r 359 MPQAHRRKALERIAHGQAHIIIGTHAL----FQDSIQYYKLILVIVDEQHRFGVQQRL------KLTQKATAPHVLLMTA 428 (700)
Q Consensus 359 ~~~~er~~i~~~i~~G~~~iiIGTHAL----~q~~v~F~~LgLvViDEQHRFGV~QR~------~L~~Kg~~ph~L~MtA 428 (700)
T Consensus 156 ---------f~~~~s~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSA 226 (1295)
T PRK11131 156 ---------FNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1295)
T ss_pred ---------CCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf ---------69887999779997656999986209987887779986855688019999999999983399988999558
Q ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEEEEC---------CCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCC
Q ss_conf 1322789999752010111102355766-620799970---------20026899997631038-738999712012211
Q gi|254780945|r 429 TPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPI---------NRIDEVIERLKVVLSEG-KKAYWICPQIEEKKE 497 (700)
Q Consensus 429 TPIPRTLal~~ygdldvS~i~e~P~gR~-~I~T~~~~~---------~~~~~~~~~i~~~l~~g-~q~y~VcPlIeese~ 497 (700)
T Consensus 227 Tid~e~fs~-yF~~apvi~---v~-Gr~~PVev~y~p~~~~~~~~~~d~~~~i~~~v~~~~~~~~GdILVFLpG~~---- 297 (1295)
T PRK11131 227 TIDPERFSR-HFNNAPIIE---VS-GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGER---- 297 (1295)
T ss_pred CCCHHHHHH-HCCCCCEEE---EC-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH----
T ss_conf 689799996-579999898---78-917886757636866544215899999999999985489987798669799----
Q ss_pred CCCCHHHHHHHHHHHH-CCC-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEEC--------
Q ss_conf 1210146666666866-371-031201469989999999997559869999800341046888765899858--------
Q gi|254780945|r 498 SNFRSVVERFNSLHEH-FTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIEN-------- 567 (700)
Q Consensus 498 ~~~~~~~~~~~~l~~~-~~~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~-------- 567 (700)
T Consensus 298 ----EI~~~~~~L~~~~~~~~~ilPL~s~ls~~eQ~~vF~--p~~~RkIVlaTNIAETSlTIp~I~yVIDsG~~k~~~y~ 371 (1295)
T PRK11131 298 ----EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQ--SHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1295)
T ss_pred ----HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHC--CCCCCEEEEECCCCCCCCEECCEEEEEECCCEEEEEEC
T ss_conf ----999999998614898876986557899999999848--89973389840520001000564899937840100475
Q ss_pred H---------HHCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 5---------254746887730116678983599997088
Q gi|254780945|r 568 A---------EHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 (700)
Q Consensus 568 a---------erfGLsqLHQLRGRVGRg~~~s~c~l~~~~ 598 (700)
T Consensus 372 ~~~~~~~L~~~~iSqAsA~QR~GRaGR~-~~G~C~RLyse 410 (1295)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSE 410 (1295)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHCCC-CCCEEEEEECH
T ss_conf 7778664667870165698750540788-99539998359