HHsearch alignment for GI: 254780945 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.24 E-value=2.9e-09 Score=92.26 Aligned_cols=299 Identities=20% Similarity=0.244 Sum_probs=180.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCEEEEEHHHHHHHHHHHHHHHHCCC
Q ss_conf 2467988999999999841001343078862144223699999973344430--54588612799999999862110145
Q gi|254780945|r 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYTQN 347 (700)
Q Consensus 270 PF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G--~Q~alMaPTEILA~QH~~~~~~~~~~ 347 (700)
T Consensus 414 ~i~lR~YQ~~AI~~v~~a~~~~~r-raLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~ 492 (1126)
T PRK11448 414 ELGLRYYQEDAIQAVEKALANGQR-EILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIE 492 (1126)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 777868899999999999980985-4688724888589899999999996587672579856589999999987543454
Q ss_pred CCC------EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHC----CCC----CCCCCCCEEEECCCCC-CCH---
Q ss_conf 786------58996246422566768776213475486411-1201----334----5544441788521013-356---
Q gi|254780945|r 348 TQI------IVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALF----QDS----IQYYKLILVIVDEQHR-FGV--- 408 (700)
Q Consensus 348 ~~i------~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~----q~~----v~F~~LgLvViDEQHR-FGV--- 408 (700)
T Consensus 493 ~~~~~~~~~~v~~l~~~------------~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~e 560 (1126)
T PRK11448 493 GNQTFASIYDIKGLTDK------------FPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKE 560 (1126)
T ss_pred CCCCCCHHHHHHHCCCC------------CCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 56664002200102567------------878777199973078998752357677999985137989778788743323
Q ss_pred ---------H-------HHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCH--H----H-----HCCCCCCCCCCEEE
Q ss_conf ---------8-------899874025677610101013227899997520101--1----1-----10235576662079
Q gi|254780945|r 409 ---------Q-------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDI--S----K-----ITEKPAGRKPIKTV 461 (700)
Q Consensus 409 ---------~-------QR~~L~~Kg~~ph~L~MtATPIPRTLal~~ygdldv--S----~-----i~e~P~gR~~I~T~ 461 (700)
T Consensus 561 m~e~e~~~rd~~s~~skyr~Ild--YFDA~~iGLTATP~~~T~~--~Fg~P~~~Ys~~eAV~DG~LVd~~~P~--~i~T~ 634 (1126)
T PRK11448 561 MTEGELQFRDQLDYVSKYRRVLD--YFDAVKIGLTATPALHTTE--IFGEPVYTYSYREAVIDGYLIDHEPPI--RIETK 634 (1126)
T ss_pred CCCCHHCCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCHHH--HHCCCCEEECHHHHHCCCCCCCCCCCE--EEEEE
T ss_conf 11000102320247778999987--6215540476799955567--709973000588873047556886887--99756
Q ss_pred EEECC----C---------------------------------------HHHHHHHHHHHHCCCC--EEEEEECCCCCCC
Q ss_conf 99702----0---------------------------------------0268999976310387--3899971201221
Q gi|254780945|r 462 IIPIN----R---------------------------------------IDEVIERLKVVLSEGK--KAYWICPQIEEKK 496 (700)
Q Consensus 462 ~~~~~----~---------------------------------------~~~~~~~i~~~l~~g~--q~y~VcPlIeese 496 (700)
T Consensus 635 l~~~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~------ 708 (1126)
T PRK11448 635 LAKEGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCV------ 708 (1126)
T ss_pred EECCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC------
T ss_conf 51046035876434420300000202558731337888827320383479999999998458899987699927------
Q ss_pred CCCCCHHHHHHHHHHHHC----CC----CEECCCCCCCHHHHHHHHHHHHCCCE-EEEEECHHHHCCCCCCCCCEEEEEC
Q ss_conf 112101466666668663----71----03120146998999999999755986-9999800341046888765899858
Q gi|254780945|r 497 ESNFRSVVERFNSLHEHF----TS----SIAIIHGRMSDIDKESVMDSFKNGTC-KLLIATTVIEVGIDVVDASIIIIEN 567 (700)
Q Consensus 497 ~~~~~~~~~~~~~l~~~~----~~----~v~~lHGkm~~~ek~~~m~~F~~g~~-~iLvaTtviEVGvdvpna~~mvI~~ 567 (700)
T Consensus 709 --~~~HAd~Iv~~l~e~F~~~y~~~~~~~~~~It~~~~~--~~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R 784 (1126)
T PRK11448 709 --TDAHADMVVRLLKEAFKKKYGQVEDDAIIKITGDADK--VQQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLR 784 (1126)
T ss_pred --CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf --8699999999999998864787678448997088844--789999725789983899856210476664201688766
Q ss_pred HHHCCHHHHHHHHHCCCCCCC--CEEEEEEECC
Q ss_conf 525474688773011667898--3599997088
Q gi|254780945|r 568 AEHFGLAQLHQLRGRVGRGEE--ISSCILLYHP 598 (700)
Q Consensus 568 aerfGLsqLHQLRGRVGRg~~--~s~c~l~~~~ 598 (700)
T Consensus 785 ~V~-S~i~F~QMiGRGTRlc~~i~K~~F~I~Da 816 (1126)
T PRK11448 785 RVK-SRILYEQMKGRATRLCPDIGKTVFRIFDA 816 (1126)
T ss_pred ECC-CHHHHHHHHCCCCCCCCCCCCCEEEEEEC
T ss_conf 756-67786654167554376668766999601