HHsearch alignment for GI: 254780945 and conserved domain: PRK11773
>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=95.08 E-value=0.099 Score=33.16 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCC--CCCCCHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999984142589999998520630--00260006987440003887599999999
Q gi|254780945|r 605 YTRLSVLKNTEDGFLIAEEDLKQRKEG--EILGIKQSGMPKFLIAQPELHDSLLEIAR 660 (700)
Q Consensus 605 ~~Rl~~l~~~~dGf~iAe~Dl~lRG~G--~~~G~~QsG~~~~~~~d~~~d~~ll~~a~ 660 (700)
T Consensus 595 ERRLfYV-----aiTRAk~~L~ls~~~~r~~~g~~~~~~pSRFl~ei--p~~~~~~~~ 645 (722)
T PRK11773 595 ERRLAYV-----GITRAMQKLTLTYAESRRLYGKEVYHRPSRFIREI--PEECVEEVR 645 (722)
T ss_pred HHHHHHH-----HHHHHHHHEEEEECCHHHHCCCCCCCCCCCCHHHC--CHHHHHHHH
T ss_conf 9999999-----89887452488551254546777678898146657--899998763