HHsearch alignment for GI: 254780945 and conserved domain: PRK12366
>PRK12366 replication factor A; Reviewed.
Probab=95.97 E-value=0.097 Score=33.24 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred CCCCHHHCCCCCEEEEEEEEEEEEEEC-CCC-----CCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 446478889987899999998975421-589-----83389999818936999995188789987328988899998997
Q gi|254780945|r 57 YRPKISEISEERIVTITGYISQHSSFQ-LQK-----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIK 130 (700)
Q Consensus 57 ~~~~I~~l~~g~~vti~g~V~~~~~~~-~~~-----r~~~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~vsGKv~ 130 (700)
T Consensus 174 ~~y~I~el~~~~~~ti~G~V~~~~~irtF~r~DGS~G~v~sl~l~DeTGsIRvTLWdd~ad~---~v~kGD~V~V~Gy~~ 250 (649)
T PRK12366 174 DNYKIPELMPNLLKTINGEITKAYPKKEFTKKDGTEGQLKSFIVKDETGSIRVTLWNELTDI---EVKKGDIVEVSGYVK 250 (649)
T ss_pred CCCCHHHHCCCCCCEEEEEEEECCCCEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCC---CCCCCCEEEEEEEEC
T ss_conf 77327782778752699999643686353247898646767899778885899985676654---335798999988872
Q ss_pred E-CCCEEEEECCEEEEC
Q ss_conf 3-187799977868962
Q gi|254780945|r 131 K-LKNRIIMVHPHYIFH 146 (700)
Q Consensus 131 ~-~~~~~qi~hPe~~~~ 146 (700)
T Consensus 251 egy~g~lel~~~n~~I~ 267 (649)
T PRK12366 251 QGYSGNTELSVDNIGIV 267 (649)
T ss_pred CCCCCCEEEEECCEEEC
T ss_conf 56324048887537850