HHsearch alignment for GI: 254780945 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=94.98 E-value=0.11 Score=32.67 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=48.9
Q ss_pred CCHHHHHHHH---HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHH
Q ss_conf 7988999999---99984100134307886214422369999997334443054588612799999
Q gi|254780945|r 273 PTKSQESAIK---DILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQ 335 (700)
Q Consensus 273 LT~~Q~~ai~---eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~ 335 (700)
T Consensus 79 ~~~~~~~a~~~a~~~~~~F~~-~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~ 143 (248)
T PRK12377 79 QNDGQRYALSQAKSIADELMT-GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 787899999999999998731-88608998999987889999999999987996999889999999