HHsearch alignment for GI: 254780945 and conserved domain: PRK13342

Probab=94.92  E-value=0.13  Score=32.15  Aligned_cols=108  Identities=23%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             HHHHHHHH---HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             89999999---998410013430788621442236999999733444305458861279999999986211014578658
Q gi|254780945|r  276 SQESAIKD---ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV  352 (700)
Q Consensus       276 ~Q~~ai~e---I~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v  352 (700)
T Consensus        17 GQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~i--------------------iA~~----~~~~f~~l--n-   69 (417)
T PRK13342         17 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARI--------------------IAGA----TDAEFEAL--S-   69 (417)
T ss_pred             CCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--------------------HHHH----HCCCEEEE--E-
T ss_conf             9877608971999999769997599889699989999999--------------------9998----68988996--1-


Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEEECHH
Q ss_conf             99624642256676877621347548641112013345544441788521013356889987402567761010101
Q gi|254780945|r  353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT  429 (700)
Q Consensus       353 ~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~Kg~~ph~L~MtAT  429 (700)
T Consensus        70 ---A~~~gv~dir~ii~~a~~~~----~~-----------~~-tilfiDEIHRfnK~QQD~LLp~vE~g~iiLIgAT  127 (417)
T PRK13342         70 ---AVTSGVKDLREVIEEAKQSR----LG-----------RR-TILFIDEIHRFNKAQQDALLPHVEDGTITLIGAT  127 (417)
T ss_pred             ---CCCCCHHHHHHHHHHHHHHH----CC-----------CC-EEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             ---41038899999999988631----48-----------96-5999978200588999999875112656999741