HHsearch alignment for GI: 254780945 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=93.97 E-value=0.26 Score=29.91 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=84.5
Q ss_pred CEEE-EEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf 4588-61279999999986211014578658996246422566--76877621347548641112013345544441788
Q gi|254780945|r 323 QAVI-MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR--RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI 399 (700)
Q Consensus 323 Q~al-MaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er--~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV 399 (700)
T Consensus 273 ~~~~~~~~~g~G~~~~~~~l~~~~p~~--~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gtq~~-~kG~~fp~~~l~g 349 (524)
T TIGR00595 273 GSEDTLKYKGLGTEKVEEELAKLFPGA--RIARLDSDTTSRKGAHEALLNQFANGKADILIGTQMI-AKGHDFPNVTLVG 349 (524)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCC--CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHH-HCCCCCCCEEEEE
T ss_conf 664301203542789999999855887--3676412212351468999999750784067500344-3157744203677
Q ss_pred ECCCC------CCCHHHHH-HHHHC--------CCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 52101------33568899-87402--------5677610101013227899997520101111023
Q gi|254780945|r 400 VDEQH------RFGVQQRL-KLTQK--------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK 451 (700)
Q Consensus 400 iDEQH------RFGV~QR~-~L~~K--------g~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~ 451 (700)
T Consensus 350 ~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~~~~~~~~~~~f~~~~~ 416 (524)
T TIGR00595 350 VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAIQAALTGDYEAFYEQEL 416 (524)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 8731200255421346778888887641002346887479973077516889876068167899988