HHsearch alignment for GI: 254780945 and conserved domain: TIGR00595

>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=93.97  E-value=0.26  Score=29.91  Aligned_cols=126  Identities=18%  Similarity=0.216  Sum_probs=84.5

Q ss_pred             CEEE-EEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH--HHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf             4588-61279999999986211014578658996246422566--76877621347548641112013345544441788
Q gi|254780945|r  323 QAVI-MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHR--RKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI  399 (700)
Q Consensus       323 Q~al-MaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er--~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV  399 (700)
T Consensus       273 ~~~~~~~~~g~G~~~~~~~l~~~~p~~--~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gtq~~-~kG~~fp~~~l~g  349 (524)
T TIGR00595       273 GSEDTLKYKGLGTEKVEEELAKLFPGA--RIARLDSDTTSRKGAHEALLNQFANGKADILIGTQMI-AKGHDFPNVTLVG  349 (524)
T ss_pred             CCCCCEEECCCCHHHHHHHHHHHCCCC--CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHH-HCCCCCCCEEEEE
T ss_conf             664301203542789999999855887--3676412212351468999999750784067500344-3157744203677


Q ss_pred             ECCCC------CCCHHHHH-HHHHC--------CCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             52101------33568899-87402--------5677610101013227899997520101111023
Q gi|254780945|r  400 VDEQH------RFGVQQRL-KLTQK--------ATAPHVLLMTATPIPRTLVLTSLGDIDISKITEK  451 (700)
Q Consensus       400 iDEQH------RFGV~QR~-~L~~K--------g~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~  451 (700)
T Consensus       350 ~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~~~~~~~~~~~f~~~~~  416 (524)
T TIGR00595       350 VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAIQAALTGDYEAFYEQEL  416 (524)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHH
T ss_conf             8731200255421346778888887641002346887479973077516889876068167899988