HHsearch alignment for GI: 254780945 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=99.53 E-value=6.8e-12 Score=112.85 Aligned_cols=305 Identities=21% Similarity=0.391 Sum_probs=217.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf 246798899999999984100134307886214422369999997334443-0545886127999999998621101457
Q gi|254780945|r 270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNT 348 (700)
Q Consensus 270 PF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~~~~~~~~~~ 348 (700)
T Consensus 7 ~f~P~GDQP~AI~~L~~~l~~G~~~Q-tLLGvTGsGKTFT----~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeN 81 (667)
T TIGR00631 7 PFQPAGDQPKAIAKLVEGLEAGEKEQ-TLLGVTGSGKTFT----MANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPEN 81 (667)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHH----HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 88567881899999999985688714-7853214862788----989999847984998577767999999998638677
Q ss_pred C-----------------------------------------------------------------------CEEEEEEC
Q ss_conf 8-----------------------------------------------------------------------65899624
Q gi|254780945|r 349 Q-----------------------------------------------------------------------IIVEIITG 357 (700)
Q Consensus 349 ~-----------------------------------------------------------------------i~v~lLtg 357 (700)
T Consensus 82 AVEYFvSYYDYYQPEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~~~~l~vG 161 (667)
T TIGR00631 82 AVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVG 161 (667)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCCEEEEEEC
T ss_conf 24525520323787321479884130455300467677889888642378789998755206888825564227865407
Q ss_pred CCCHHHHHHHHHHH------------------------------------------------------------------
Q ss_conf 64225667687762------------------------------------------------------------------
Q gi|254780945|r 358 NMPQAHRRKALERI------------------------------------------------------------------ 371 (700)
Q Consensus 358 ~~~~~er~~i~~~i------------------------------------------------------------------ 371 (700)
T Consensus 162 ~~--~~~~~ll~~LV~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~ 239 (667)
T TIGR00631 162 KE--IDRRELLRRLVELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSF 239 (667)
T ss_pred CC--CCHHHHHHHHHHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCE
T ss_conf 85--5889999886340305712340577125763189863477677724899852554320212051105111005615
Q ss_pred ---------------------------------------------------------CCCCC-------EEEE----EC-
Q ss_conf ---------------------------------------------------------13475-------4864----11-
Q gi|254780945|r 372 ---------------------------------------------------------AHGQA-------HIII----GT- 382 (700)
Q Consensus 372 ---------------------------------------------------------~~G~~-------~iiI----GT- 382 (700)
T Consensus 240 ~ifPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEp 319 (667)
T TIGR00631 240 TIFPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEP 319 (667)
T ss_pred EEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 86054000258047999999999999999999987795178888988688778887506733770000002167776315
Q ss_pred -HHHCCCCC-CCCCCCEEEECCCCCCCHHH-----H------HHHHHCC-------------------CCCCCEEECHHH
Q ss_conf -12013345-54444178852101335688-----9------9874025-------------------677610101013
Q gi|254780945|r 383 -HALFQDSI-QYYKLILVIVDEQHRFGVQQ-----R------LKLTQKA-------------------TAPHVLLMTATP 430 (700)
Q Consensus 383 -HAL~q~~v-~F~~LgLvViDEQHRFGV~Q-----R------~~L~~Kg-------------------~~ph~L~MtATP 430 (700)
T Consensus 320 P~tLl-DYF~gfP~DfLlviDESH-VT~PQ~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q~vyVSATP 397 (667)
T TIGR00631 320 PYTLL-DYFIGFPEDFLLVIDESH-VTLPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERINQVVYVSATP 397 (667)
T ss_pred CCCHH-HHCCCCCCCEEEEEEECC-CCHHHHHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHCCCEEEEECCC
T ss_conf 96477-650468865089884025-7502213441304676543320277530013587898799998559889996388
Q ss_pred HHHHHHHHHHHCCCHHHHCC--CCCCCCCCEEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 22789999752010111102--35576662079997-0200268999976310387389997120122111210146666
Q gi|254780945|r 431 IPRTLVLTSLGDIDISKITE--KPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF 507 (700)
Q Consensus 431 IPRTLal~~ygdldvS~i~e--~P~gR~~I~T~~~~-~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~ 507 (700)
T Consensus 398 G~~E~e~S~~-----~vvEQiiRPTGLlDP~i~VRP~~gQvdDL~~EI~~R~~~~ERvLVT--------TLTKkMA---- 460 (667)
T TIGR00631 398 GDYELEQSGG-----NVVEQIIRPTGLLDPEIEVRPTDGQVDDLLSEIRQRVARNERVLVT--------TLTKKMA---- 460 (667)
T ss_pred CHHHHHHHCC-----CEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE--------EHHHHHH----
T ss_conf 5899973269-----1589987377864883688358515888899999999728948998--------2016778----
Q ss_pred HHHHHHCC---CCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHH
Q ss_conf 66686637---1031201469989999999997559869999800341046888765899858525474----6887730
Q gi|254780945|r 508 NSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLR 580 (700)
Q Consensus 508 ~~l~~~~~---~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLR 580 (700)
T Consensus 461 EdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTI 540 (667)
T TIGR00631 461 EDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 540 (667)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 89999970588379871455789999999998447884088600020024651148899763278889986630278898
Q ss_pred HCCCCCCCCEEEEEEECCCCCH
Q ss_conf 1166789835999970888998
Q gi|254780945|r 581 GRVGRGEEISSCILLYHPPLSK 602 (700)
Q Consensus 581 GRVGRg~~~s~c~l~~~~~~~~ 602 (700)
T Consensus 541 GRAARN~-~G~Vil-YAD~iT~ 560 (667)
T TIGR00631 541 GRAARNV-NGKVIL-YADKITD 560 (667)
T ss_pred HHHHHCC-CCEEEE-ECCCCCH
T ss_conf 8875257-965999-7287007