HHsearch alignment for GI: 254780945 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=99.53  E-value=6.8e-12  Score=112.85  Aligned_cols=305  Identities=21%  Similarity=0.391  Sum_probs=217.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf             246798899999999984100134307886214422369999997334443-0545886127999999998621101457
Q gi|254780945|r  270 PFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQNT  348 (700)
Q Consensus       270 PF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~~~~~~~~~~  348 (700)
T Consensus         7 ~f~P~GDQP~AI~~L~~~l~~G~~~Q-tLLGvTGsGKTFT----~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeN   81 (667)
T TIGR00631         7 PFQPAGDQPKAIAKLVEGLEAGEKEQ-TLLGVTGSGKTFT----MANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPEN   81 (667)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHH----HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf             88567881899999999985688714-7853214862788----989999847984998577767999999998638677


Q ss_pred             C-----------------------------------------------------------------------CEEEEEEC
Q ss_conf             8-----------------------------------------------------------------------65899624
Q gi|254780945|r  349 Q-----------------------------------------------------------------------IIVEIITG  357 (700)
Q Consensus       349 ~-----------------------------------------------------------------------i~v~lLtg  357 (700)
T Consensus        82 AVEYFvSYYDYYQPEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~~~~l~vG  161 (667)
T TIGR00631        82 AVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVG  161 (667)
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCCEEEEEEC
T ss_conf             24525520323787321479884130455300467677889888642378789998755206888825564227865407


Q ss_pred             CCCHHHHHHHHHHH------------------------------------------------------------------
Q ss_conf             64225667687762------------------------------------------------------------------
Q gi|254780945|r  358 NMPQAHRRKALERI------------------------------------------------------------------  371 (700)
Q Consensus       358 ~~~~~er~~i~~~i------------------------------------------------------------------  371 (700)
T Consensus       162 ~~--~~~~~ll~~LV~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~  239 (667)
T TIGR00631       162 KE--IDRRELLRRLVELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSF  239 (667)
T ss_pred             CC--CCHHHHHHHHHHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCE
T ss_conf             85--5889999886340305712340577125763189863477677724899852554320212051105111005615


Q ss_pred             ---------------------------------------------------------CCCCC-------EEEE----EC-
Q ss_conf             ---------------------------------------------------------13475-------4864----11-
Q gi|254780945|r  372 ---------------------------------------------------------AHGQA-------HIII----GT-  382 (700)
Q Consensus       372 ---------------------------------------------------------~~G~~-------~iiI----GT-  382 (700)
T Consensus       240 ~ifPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEp  319 (667)
T TIGR00631       240 TIFPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEP  319 (667)
T ss_pred             EEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC
T ss_conf             86054000258047999999999999999999987795178888988688778887506733770000002167776315


Q ss_pred             -HHHCCCCC-CCCCCCEEEECCCCCCCHHH-----H------HHHHHCC-------------------CCCCCEEECHHH
Q ss_conf             -12013345-54444178852101335688-----9------9874025-------------------677610101013
Q gi|254780945|r  383 -HALFQDSI-QYYKLILVIVDEQHRFGVQQ-----R------LKLTQKA-------------------TAPHVLLMTATP  430 (700)
Q Consensus       383 -HAL~q~~v-~F~~LgLvViDEQHRFGV~Q-----R------~~L~~Kg-------------------~~ph~L~MtATP  430 (700)
T Consensus       320 P~tLl-DYF~gfP~DfLlviDESH-VT~PQ~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q~vyVSATP  397 (667)
T TIGR00631       320 PYTLL-DYFIGFPEDFLLVIDESH-VTLPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERINQVVYVSATP  397 (667)
T ss_pred             CCCHH-HHCCCCCCCEEEEEEECC-CCHHHHHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHCCCEEEEECCC
T ss_conf             96477-650468865089884025-7502213441304676543320277530013587898799998559889996388


Q ss_pred             HHHHHHHHHHHCCCHHHHCC--CCCCCCCCEEEEEE-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             22789999752010111102--35576662079997-0200268999976310387389997120122111210146666
Q gi|254780945|r  431 IPRTLVLTSLGDIDISKITE--KPAGRKPIKTVIIP-INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERF  507 (700)
Q Consensus       431 IPRTLal~~ygdldvS~i~e--~P~gR~~I~T~~~~-~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~  507 (700)
T Consensus       398 G~~E~e~S~~-----~vvEQiiRPTGLlDP~i~VRP~~gQvdDL~~EI~~R~~~~ERvLVT--------TLTKkMA----  460 (667)
T TIGR00631       398 GDYELEQSGG-----NVVEQIIRPTGLLDPEIEVRPTDGQVDDLLSEIRQRVARNERVLVT--------TLTKKMA----  460 (667)
T ss_pred             CHHHHHHHCC-----CEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE--------EHHHHHH----
T ss_conf             5899973269-----1589987377864883688358515888899999999728948998--------2016778----


Q ss_pred             HHHHHHCC---CCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHH
Q ss_conf             66686637---1031201469989999999997559869999800341046888765899858525474----6887730
Q gi|254780945|r  508 NSLHEHFT---SSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLR  580 (700)
Q Consensus       508 ~~l~~~~~---~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLR  580 (700)
T Consensus       461 EdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTI  540 (667)
T TIGR00631       461 EDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI  540 (667)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             89999970588379871455789999999998447884088600020024651148899763278889986630278898


Q ss_pred             HCCCCCCCCEEEEEEECCCCCH
Q ss_conf             1166789835999970888998
Q gi|254780945|r  581 GRVGRGEEISSCILLYHPPLSK  602 (700)
Q Consensus       581 GRVGRg~~~s~c~l~~~~~~~~  602 (700)
T Consensus       541 GRAARN~-~G~Vil-YAD~iT~  560 (667)
T TIGR00631       541 GRAARNV-NGKVIL-YADKITD  560 (667)
T ss_pred             HHHHHCC-CCEEEE-ECCCCCH
T ss_conf             8875257-965999-7287007