HHsearch alignment for GI: 254780945 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.59 E-value=0.019 Score=38.72 Aligned_cols=81 Identities=14% Similarity=0.306 Sum_probs=63.2
Q ss_pred HHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCC
Q ss_conf 73344430545886127999999998621101457865899624642256676877621347548641112013345544
Q gi|254780945|r 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY 393 (700)
Q Consensus 314 ~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~ 393 (700)
T Consensus 440 I~~R~~~~ERvLVTTLTKkMAE----dLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGIN-LLREGLDlP 514 (667)
T TIGR00631 440 IRQRVARNERVLVTTLTKKMAE----DLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-LLREGLDLP 514 (667)
T ss_pred HHHHHHCCCCEEEEEHHHHHHH----HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHCCCCCH
T ss_conf 9999972894899820167788----99999705883798714557899999999984478840886000-200246511
Q ss_pred CCCEEE
Q ss_conf 441788
Q gi|254780945|r 394 KLILVI 399 (700)
Q Consensus 394 ~LgLvV 399 (700)
T Consensus 515 EVSLVA 520 (667)
T TIGR00631 515 EVSLVA 520 (667)
T ss_pred HHHHHH
T ss_conf 488997