HHsearch alignment for GI: 254780945 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.59  E-value=0.019  Score=38.72  Aligned_cols=81  Identities=14%  Similarity=0.306  Sum_probs=63.2

Q ss_pred             HHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCC
Q ss_conf             73344430545886127999999998621101457865899624642256676877621347548641112013345544
Q gi|254780945|r  314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYY  393 (700)
Q Consensus       314 ~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~  393 (700)
T Consensus       440 I~~R~~~~ERvLVTTLTKkMAE----dLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGIN-LLREGLDlP  514 (667)
T TIGR00631       440 IRQRVARNERVLVTTLTKKMAE----DLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-LLREGLDLP  514 (667)
T ss_pred             HHHHHHCCCCEEEEEHHHHHHH----HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHCCCCCH
T ss_conf             9999972894899820167788----99999705883798714557899999999984478840886000-200246511


Q ss_pred             CCCEEE
Q ss_conf             441788
Q gi|254780945|r  394 KLILVI  399 (700)
Q Consensus       394 ~LgLvV  399 (700)
T Consensus       515 EVSLVA  520 (667)
T TIGR00631       515 EVSLVA  520 (667)
T ss_pred             HHHHHH
T ss_conf             488997